@include "rna/_cr_lib_stages.mro"

call DETECT_VDJ_RECEPTOR(
    force_receptor     = "IG",
    vdj_reference_path = "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
    chemistry          = "SCVDJ-R2",
    sample_def         = [
        {
            "fastq_id": "dimitri_BCR",
            "fastq_mode": "ILMN_BCL2FASTQ",
            "gem_group": 1,
            "lanes": null,
            "library_type": "VDJ",
            "read_path": "/scratch/etanis/ST-118/FASTQ/",
            "sample_indices": null,
            "sample_names": ["dimitri_BCR"],
            "subsample_rate": null,
            "target_set": null,
            "target_set_name": null,
        },
    ],
)
