@include "rna/_cr_lib_stages.mro"

call CHECK_BARCODES_COMPATIBILITY_VDJ(
    vdj_chemistry_name          = "SCVDJ-R2",
    vdj_sample_def              = [
        {
            "fastq_id": "dimitri_TCR",
            "fastq_mode": "ILMN_BCL2FASTQ",
            "gem_group": 1,
            "lanes": null,
            "library_type": "VDJ",
            "read_path": "/scratch/etanis/ST-118/FASTQ/",
            "sample_indices": null,
            "sample_names": ["dimitri_TCR"],
            "subsample_rate": null,
            "target_set": null,
            "target_set_name": null,
        },
    ],
    gex_chemistry_name          = "SC5P-R2",
    gex_sample_def              = [
        {
            "fastq_id": "dimitri_RNA",
            "fastq_mode": "ILMN_BCL2FASTQ",
            "gem_group": 1,
            "lanes": null,
            "library_type": "Gene Expression",
            "read_path": "/scratch/etanis/ST-118/FASTQ/",
            "sample_indices": null,
            "sample_names": ["dimitri_RNA"],
            "subsample_rate": null,
            "target_set": null,
            "target_set_name": null,
        },
    ],
    gex_custom_chemistry_def    = null,
    vdj_custom_chemistry_def    = null,
    enforce_library_concordance = true,
)
