@include "rna/_cr_vdj_stages.mro"

call HANDLE_NO_VDJ_REF(
    asm_contig_json       = "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
    clonotype_contig_json = "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0/chnk0-ucc6a7a7cd5/files/all_contig_annotations.json",
    has_no_vdj_ref        = false,
)
