@include "rna/_sc_vdj_clonotype_assigner.mro"

call SC_VDJ_CLONOTYPE_ASSIGNER as VDJ_B_CLONOTYPE_ASSIGNER(
    vdj_reference_path = "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
    contig_annotations = "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
    receptor           = "IG",
    has_no_vdj_ref     = false,
)
