[stdout]

starting vdj_asm_asm, mem = 0.01
available mem = 833.23 GB
/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian assembly main /scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk105-ucc6a7a72ce /scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk105-ucc6a7a72ce/files /scratch/etanis/ST-118/multi/dimitri-multi/journal/SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ.fork0.chnk105.ucc6a7a72ce
n50_n50_rpu = 288

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.0 = TTCCCAGTCATCGATG-1

using 20717 reads

====================================================================================

graph has 9285 edges initially, 92 edges after simplification

total ucounts = 1135
nonsolo ucounts = 556[2^198, 3^114, 4^64, 5^43, 6^25, 7^15, 8^10, 9^4, 10^3, 11^4, 12^3, 13^2, 14^2, 20, 28, 64, 69, 85, 93, 115, 124, 132, 147, 154, 167, 185, 190, 196, 209, 212^2, 217, 220, 228, 229, 230, 231, 233, 236, 242, 244^4, 246^2, 247^2, 248, 250, 258^2, 266, 267^3, 271^3, 276, 279^2, 286, 289, 299, 301, 306, 310, 316, 320, 326, 328, 329, 369, 378, 381, 383, 420, 594, 725, 746, 830]
surviving nonsolo ucounts = 65[64, 85, 93, 124, 132, 147, 154, 167, 185, 190, 196, 209, 212^2, 217, 220, 228, 229, 230, 231, 233, 236, 242, 244^4, 246^2, 247^2, 248, 250, 258^2, 266, 267^3, 271^3, 276, 279^2, 286, 289, 299, 301, 306, 310, 316, 320, 326, 328, 329, 369, 378, 381, 383, 420, 594, 725, 746, 830]
ids = [47, 630, 606, 471, 1106, 81, 776, 935, 974, 1012, ...]

====================================================================================

UMI info for barcode TTCCCAGTCATCGATG-1 contig 1 = AGCTCTCAGA...
umi AATTTCGGAA = 68 reads: +318 -1XX +46 -1 +39 -1 +12 invalidated
umi ACGTCACAGG = 150 reads: +417 -1 non-validated
umi ATATTAGTTT = 195 reads: +418 validated
umi CAAGTTCTTC = 317 reads: +418 validated
umi CACTAGCGCT = 335 reads: +418 validated
umi CTGTGCCGTC = 248 reads: +418 validated
umi CTTAAGGGAC = 234 reads: +418 validated
umi CTTTAGGTTC = 232 reads: +418 validated
umi GACTATTCCT = 253 reads: +418 validated
umi GAGGCCCCTT = 277 reads: +202 -2XX +214 invalidated
umi GCACGGCTGG = 85 reads: +414 -4 non-validated
umi GCCGGGAGCC = 216 reads: +418 validated
umi GCGATGTTTT = 378 reads: +418 validated
umi GCGTAGGCTT = 230 reads: +418 validated
umi GGCACCGGGA = 503 reads: +418 validated
umi GTATCATTGC = 308 reads: +418 validated
umi TAATAGCGTG = 219 reads: +403 -15 non-validated
umi TGCATACAGC = 134 reads: +8 -1XX +6 -1XX +13 -1XX +6 -1XX +5 -2XX +13 -1XX +29 -1XX +4 -1XX +9 -1XX +50 -3XX +3 -1XX +22 -1XX +8 -1XX +8 -2XX +2 -3XX +2 -6XX +1 -12X +1 -1XX +15 -1XX +33 -1XX +8 -1XX +1 -1XX +3 -1XX +25 -1XX +1 -1XX +2 -1XX +4 -1XX +20 -1XX +1 -3X +2 -5X +1 -3X +2 -3XX +1 -2XX +2 -1XX +1 -1XX +38 invalidated
umi TGGTACTTTG = 370 reads: +418 validated
umi TGTAAGTTGG = 273 reads: +418 validated
umi TTGTTCCTTT = 107 reads: +8 -1XX +6 -1XX +13 -1XX +6 -1XX +5 -2XX +13 -1XX +29 -1XX +4 -1XX +9 -1XX +50 -3XX +3 -1XX +22 -1XX +8 -1XX +8 -2XX +2 -3XX +2 -6XX +1 -2XX +1 -1XX +1 -1XX +1 -1XX +2 -2XX +1 -1XX +15 -1XX +33 -1XX +8 -1XX +1 -1XX +3 -1XX +25 -1XX +1 -1XX +2 -1XX +4 -1XX +20 -1X +1 -65X invalidated

UMI info for barcode TTCCCAGTCATCGATG-1 contig 2 = GGGGTCACAA...
umi AAACATGCTC = 303 reads: +385 validated
umi AACCTTTCGG = 207 reads: +385 validated
umi ACACGGCCTC = 282 reads: +385 validated
umi AGATGCGGAC = 385 reads: +385 validated
umi ATCGATTGAC = 244 reads: +385 validated
umi CATGTTAAGG = 269 reads: +385 validated
umi CCGACTCCTT = 245 reads: +385 validated
umi CGCTGCGCTC = 233 reads: +385 validated
umi CTAAAAGGGA = 209 reads: +385 validated
umi CTACGGCATA = 260 reads: +385 validated
umi GAATAGATAC = 249 reads: +385 validated
umi GACTGGACTA = 269 reads: +385 validated
umi GAGATGCTGT = 245 reads: +385 validated
umi GAGTTGGCAG = 90 reads: +385 validated
umi GCTATCTTGT = 266 reads: +385 validated
umi GCTGTAGTCA = 198 reads: +385 validated
umi GCTGTCGGGT = 220 reads: +385 validated
umi GTCTTTTTTG = 154 reads: +385 validated
umi TACATTCTCA = 256 reads: +385 validated
umi TCGGGTCCTC = 305 reads: +385 validated
umi TCTAGGAGTC = 166 reads: +385 validated
umi TCTTGCGTGG = 244 reads: +385 validated
umi TGACTGACTC = 253 reads: +385 validated
umi TGGTGTGATA = 188 reads: +385 validated
umi TGTTGACCTG = 248 reads: +385 validated
umi TTAGCGTGCC = 280 reads: +385 validated
umi TTCACCAATA = 293 reads: +385 validated
umi TTGGGCTTCG = 754 reads: +192 -1XX +3 -1XX +2 -1XX +1 -3XX +1 -3XX +1 -3XX +1 -2XX +2 -168X invalidated
umi TTTTGCGAGA = 254 reads: +385 validated

GOOD CONTIGS

TIG 1[bases=568]
0-79 ==> 0-79 on |141|IGHV3-48|5'UTR| [len=79] (mis=0)
79-432 ==> 0-353 on |142|IGHV3-48|L-REGION+V-REGION| [len=353] (mis=11)
451-497 ==> 0-46 on |54|IGHJ4|J-REGION| [len=46] (mis=4)
497-568 ==> 0-71 on |60|IGHM|C-REGION| [len=1358] (mis=0)
junction support: 16 umis using 342 reads
cdr3 = CARGTGRDSGSLGYW at 421, score = 9 + 7
umis assigned: [47, 81, 149, 196, 217, 519, 523, 549, 591, 602] and 11 others
of which 21 are surviving nonsolos
reads assigned: 5010
start codons at 79, 235, 356, 382
confident = true

TIG 2[bases=634]
0-38 ==> 124-162 on |342|IGLV2-23|5'UTR| [len=162] (mis=0)
38-378 ==> 0-340 on |343|IGLV2-23|L-REGION+V-REGION| [len=340] (mis=5)
385-423 ==> 0-38 on |313|IGLJ3|J-REGION| [len=38] (mis=0)
423-634 ==> 0-211 on |306|IGLC2|C-REGION| [len=317] (mis=0)
junction support: 28 umis using 1177 reads
cdr3 = CCSYAGSLWVF at 362, score = 7 + 8
umis assigned: [2, 21, 53, 104, 154, 271, 332, 407, 446, 456] and 19 others
of which 29 are surviving nonsolos
reads assigned: 7425
start codons at 38, 177, 246, 372
confident = true

REJECT CONTIGS

TIG 1[bases=561]
5-80 ==> 5533-5608 on segment before IGKV2OR2-1 exon 1 [len=6000] (mis=2)
35-395 ==> 0-360 on |265|IGKV2-28|L-REGION+V-REGION| [len=360] (mis=5)
388-425 ==> 0-37 on |216|IGKJ4|J-REGION| [len=37] (mis=4)
425-561 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
cdr3 = CWGLFLHASSTNDF at 355, score = 4 + 7
umis assigned: [199, 277, 279, 450, 471, 588, 828, 832, 839, 960] and 2 others
of which 12 are surviving nonsolos
reads assigned: 3292
start codons at 35, 68, 104, 192, 354, 374, 467
confident = false
not full
frameshifted full length transcript of length 561
VJ delta = 29
not full
now this is a cell
paired!

GCCGAGGACACGGCTGTGTATTACTGTGCGAGAGGCACGGGCCGCGATAGTGGGTCTTTGGGCTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG <==> ATCTCTGGGCTCCAGGCTGCGGACGAGGCTGATTATTACTGCTGCTCATATGCAGGTAGTCTTTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.10 = TTCCCAGTCCACTCCA-1

using 99 reads

====================================================================================

graph has 44 edges initially, 2 edges after simplification

total ucounts = 8
nonsolo ucounts = 3[3, 6, 85]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.11 = TTCCCAGTCCAGATCA-1

using 604 reads

====================================================================================

graph has 236 edges initially, 6 edges after simplification

total ucounts = 4
nonsolo ucounts = 3[50, 179, 374]
surviving nonsolo ucounts = 3[50, 179, 374]
ids = [1, 3, 0]

====================================================================================

UMI info for barcode TTCCCAGTCCAGATCA-1 contig 1 = GTGGGTAGAG...
umi TGACCATGCC = 178 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=587]
0-37 ==> 77-114 on |322|IGLV1-44|5'UTR| [len=114] (mis=0)
37-390 ==> 0-353 on |323|IGLV1-44|L-REGION+V-REGION| [len=353] (mis=15)
387-425 ==> 0-38 on |313|IGLJ3|J-REGION| [len=38] (mis=3)
425-587 ==> 0-162 on |306|IGLC2|C-REGION| [len=317] (mis=0)
junction support: 1 umis using 38 reads
cdr3 = CASWDDSLRGRVF at 358, score = 8 + 8
umis assigned: [3]
of which 1 are surviving nonsolos
reads assigned: 176
start codons at 37, 191, 341, 366, 371
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.13 = TTCCCAGTCCATTCTA-1

using 206 reads

====================================================================================

graph has 100 edges initially, 2 edges after simplification

total ucounts = 6
nonsolo ucounts = 4[2^2, 5, 195]
surviving nonsolo ucounts = 1[195]
ids = [3]

====================================================================================

UMI info for barcode TTCCCAGTCCATTCTA-1 contig 1 = AGTGACTCCT...
umi TATACCCCGG = 187 reads: +418 validated

GOOD CONTIGS

TIG 1[bases=540]
0-20 ==> 0-20 on |97|IGHV2-5|5'UTR| [len=20] (mis=0)
20-371 ==> 0-351 on |98|IGHV2-5|L-REGION+V-REGION| [len=358] (mis=26)
390-438 ==> 0-48 on |55|IGHJ4|J-REGION| [len=48] (mis=4)
438-540 ==> 0-102 on |40|IGHG1|C-REGION| [len=884] (mis=1)
junction support: 1 umis using 28 reads
cdr3 = CAVSSRADGYFDSW at 365, score = 7 + 7
umis assigned: [3]
of which 1 are surviving nonsolos
reads assigned: 183
start codons at 20, 64, 246, 326, 335
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.21 = TTCCCAGTCCTATGTT-1

using 563 reads

====================================================================================

graph has 182 edges initially, 6 edges after simplification

total ucounts = 12
nonsolo ucounts = 6[2, 4^2, 5, 204, 338]
surviving nonsolo ucounts = 2[204, 338]
ids = [4, 8]

====================================================================================

UMI info for barcode TTCCCAGTCCTATGTT-1 contig 1 = GACTGATCAG...
umi CATTGTATTA = 203 reads: +394 validated
umi GTATCCTGCA = 335 reads: -15X +379 invalidated

GOOD CONTIGS

TIG 1[bases=564]
0-34 ==> 2-36 on |272|IGKV2D-28|5'UTR| [len=36] (mis=0)
34-394 ==> 0-360 on |273|IGKV2D-28|L-REGION+V-REGION| [len=360] (mis=1)
389-428 ==> 0-39 on |214|IGKJ2|J-REGION| [len=39] (mis=5)
428-564 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 2 umis using 85 reads
cdr3 = CMQALQTPTF at 370, score = 9 + 8
umis assigned: [4, 8]
of which 2 are surviving nonsolos
reads assigned: 534
start codons at 34, 67, 103, 191, 353, 373, 470
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.37 = TTCCCAGTCGGCTACG-1

using 319 reads

====================================================================================

graph has 144 edges initially, 2 edges after simplification

total ucounts = 8
nonsolo ucounts = 4[3, 4^2, 304]
surviving nonsolo ucounts = 1[304]
ids = [1]

====================================================================================

UMI info for barcode TTCCCAGTCGGCTACG-1 contig 1 = AGACCCAGTC...
umi AGTTCACAAC = 311 reads: +382 validated

GOOD CONTIGS

TIG 1[bases=538]
0-20 ==> 27-47 on |218|IGKV1-12|5'UTR| [len=47] (mis=0)
20-371 ==> 0-351 on |219|IGKV1-12|L-REGION+V-REGION| [len=351] (mis=10)
365-402 ==> 0-37 on |216|IGKJ4|J-REGION| [len=37] (mis=2)
402-538 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 48 reads
cdr3 = CQQAKSFSF at 347, score = 9 + 7
umis assigned: [1]
of which 1 are surviving nonsolos
reads assigned: 301
start codons at 20, 26, 82, 95, 231, 444
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.38 = TTCCCAGTCGGTCTAA-1

using 405 reads

====================================================================================

graph has 160 edges initially, 2 edges after simplification

total ucounts = 20
nonsolo ucounts = 6[2^2, 3^2, 24, 357]
surviving nonsolo ucounts = 2[24, 357]
ids = [8, 11]

====================================================================================

UMI info for barcode TTCCCAGTCGGTCTAA-1 contig 1 = GGGGAGGAAT...
umi CCGTAGATAC = 24 reads: +11 -19 +358 non-validated
umi CTACTTTTCT = 355 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=555]
31-382 ==> 0-351 on |223|IGKV1-17|L-REGION+V-REGION| [len=351] (mis=19)
381-419 ==> 0-38 on |213|IGKJ1|J-REGION| [len=38] (mis=1)
419-555 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 2 umis using 51 reads
cdr3 = CLQYSSSPWTF at 358, score = 9 + 8
umis assigned: [8, 11]
of which 2 are surviving nonsolos
reads assigned: 376
start codons at 31, 37, 106, 242, 461
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.43 = TTCCCAGTCGTTGACA-1

using 9940 reads

====================================================================================

graph has 5820 edges initially, 138 edges after simplification

total ucounts = 1600
nonsolo ucounts = 759[2^335, 3^149, 4^99, 5^68, 6^34, 7^19, 8^15, 9^12, 10, 11^3, 12, 14^2, 15, 16, 21, 119, 152, 154, 170, 175, 183, 186, 226, 231, 247, 256, 286, 292, 346, 518, 594, 637, 1773]
surviving nonsolo ucounts = 18[119, 152, 154, 170, 175, 183, 186, 226, 231, 247, 256, 286, 292, 346, 518, 594, 637, 1773]
ids = [662, 283, 1575, 338, 876, 1401, 956, 616, 751, 1465, ...]

====================================================================================

UMI info for barcode TTCCCAGTCGTTGACA-1 contig 1 = GGGGGCTGGG...
umi AAATGCCGCT = 256 reads: +391 validated
umi ACTTCCCCCC = 347 reads: +391 validated
umi ATCGTTGGTA = 169 reads: +391 validated
umi CATCTGCCGT = 283 reads: +391 validated
umi CCGTATGGGA = 230 reads: +391 validated
umi CTAATTTCCA = 230 reads: +391 validated
umi CTCAACCTAG = 1833 reads: -353X +1 -3XX +2 -1XX +5 -4XX +9 -1XX +1 -1XX +10 invalidated
umi GAATATTGCC = 175 reads: +391 validated
umi GAGACTGCAG = 596 reads: +391 validated
umi GCCTATTTCA = 185 reads: +391 validated
umi GTATAGGGTT = 290 reads: +391 validated
umi TGAGCGGTTA = 183 reads: +391 validated
umi TGTTCTGATC = 247 reads: +391 validated
umi TTTATTGTGT = 654 reads: -353X +1 -3XX +2 -1XX +5 -4XX +9 -1XX +1 -1XX +10 invalidated
umi TTTCACATTT = 155 reads: +391 validated

GOOD CONTIGS

TIG 1[bases=647]
45-397 ==> 0-352 on |339|IGLV2-14|L-REGION+V-REGION| [len=361] (mis=11)
398-436 ==> 0-38 on |309|IGLJ1|J-REGION| [len=38] (mis=0)
436-647 ==> 0-211 on |305|IGLC1|C-REGION| [len=317] (mis=1)
junction support: 13 umis using 560 reads
cdr3 = CTSYTSSSTPYVF at 369, score = 8 + 8
umis assigned: [28, 198, 338, 507, 616, 751, 776, 876, 892, 956] and 5 others
of which 15 are surviving nonsolos
reads assigned: 5634
start codons at 45, 202, 246, 253, 256, 400, 568
confident = true

REJECT CONTIGS

TIG 1[bases=361]
5-109 ==> 49-153 on rc of segment before IGHD3-9 exon 1 [len=153] (mis=0)
131-179 ==> 0-48 on |55|IGHJ4|J-REGION| [len=48] (mis=4)
179-361 ==> 0-182 on |45|IGHG3|C-REGION| [len=1130] (mis=1)
umis assigned: [283, 662, 914]
of which 3 are surviving nonsolos
reads assigned: 526
start codons at 17, 117
confident = false
did not find CDR3
now this is a cell
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.47 = TTCCCAGTCTACCAGA-1

using 51626 reads

====================================================================================

graph has 15798 edges initially, 132 edges after simplification

total ucounts = 1960
nonsolo ucounts = 1026[2^353, 3^204, 4^103, 5^86, 6^50, 7^31, 8^11, 9^12, 10^4, 11^4, 12, 13^3, 15^4, 16, 22, 26, 36, 44, 53, 57, 62, 79, 88, 95, 97, 103, 104, 122, 124, 135, 141, 147^2, 151, 154, 157, 164, 177, 178, 191, 213, 214, 215, 218, 219, 220, 223, 225, 228, 230, 232, 235, 236, 238, 240, 243, 244, 245^3, 247, 250, 253, 256^2, 259, 261, 265, 269, 270, 271^2, 272, 273^2, 276, 277, 278, 279, 281, 284^2, 285^2, 286, 289^3, 291, 294^2, 298, 300^2, 301, 302, 304^2, 305, 307, 309, 311, 315, 316^2, 317, 318, 319, 321, 322, 323, 324, 326, 327^2, 328, 331, 332^2, 333, 334, 336, 337^2, 338, 339^3, 340, 341^3, 342^2, 343^2, 346, 347, 348^2, 349, 353^2, 355, 356^2, 371^3, 372, 375^2, 377, 378, 386, 398, 407, 461, 470, 473, 494, 499^2, 501, 506, 531, 535, 556, 572, 684, 735, 894, 936]
surviving nonsolo ucounts = 143[97, 104, 135, 147, 151, 157, 164, 177, 178, 191, 213, 214, 215, 218, 219, 220, 223, 225, 228, 230, 232, 235, 236, 238, 240, 243, 244, 245^3, 247, 250, 253, 256^2, 259, 261, 265, 269, 270, 271^2, 272, 273^2, 276, 277, 278, 279, 281, 284^2, 285^2, 286, 289^3, 291, 294^2, 298, 300^2, 301, 302, 304^2, 305, 307, 309, 311, 315, 316^2, 317, 318, 319, 321, 322, 323, 324, 326, 327^2, 328, 331, 332^2, 333, 334, 336, 337^2, 338, 339^3, 340, 341^3, 342^2, 343^2, 346, 347, 348^2, 349, 353^2, 355, 356^2, 371^3, 372, 375^2, 377, 378, 386, 398, 407, 461, 470, 473, 494, 499^2, 501, 506, 531, 535, 556, 572, 684, 735, 894, 936]
ids = [1656, 1619, 1520, 332, 1042, 658, 963, 1039, 512, 200, ...]

====================================================================================

UMI info for barcode TTCCCAGTCTACCAGA-1 contig 1 = TGGGGGATCA...
umi AAAGATGTTC = 289 reads: +400 validated
umi ACATCGGTTT = 235 reads: +400 validated
umi ACATTCTCTT = 381 reads: +400 validated
umi ACCAAGCGCT = 748 reads: -235X +165 invalidated
umi ACCATCGCCA = 266 reads: +400 validated
umi ACGGCATTCT = 287 reads: +400 validated
umi ACTATCATGG = 279 reads: +400 validated
umi ACTTACGGCC = 309 reads: -14X +2 -1XX +1 -1XX +1 -1XX +2 -2XX +1 -2XX +1 -3XX +1 -15XX +352 invalidated
umi AGCAGGCTGT = 226 reads: +400 validated
umi AGCGCATTTC = 192 reads: +400 validated
umi AGGAATAAGG = 249 reads: +400 validated
umi AGGATTGTGA = 271 reads: +400 validated
umi AGGCCCCCCT = 252 reads: +400 validated
umi AGTACAGTCG = 307 reads: +400 validated
umi ATATGGCACT = 305 reads: +400 validated
umi ATCAAAGTAC = 275 reads: +400 validated
umi ATCTGTGCGG = 326 reads: +400 validated
umi ATCTTACCAT = 345 reads: +400 validated
umi ATGAGTTCCT = 334 reads: +400 validated
umi ATGCTACTCT = 354 reads: +400 validated
umi ATGGCAATGG = 368 reads: +400 validated
umi ATGGTGGTCA = 151 reads: +400 validated
umi ATTCTCTCTT = 854 reads: -357 +1 -5XX +1 -2XX +2 -1XX +7 -2XX +8 -1XX +5 -1XX +7 invalidated
umi ATTGCCCAAC = 289 reads: +400 validated
umi ATTGCTGCCT = 322 reads: +400 validated
umi CAACAGATCA = 345 reads: +400 validated
umi CACGGTGCGA = 464 reads: -363X +1 -2XX +2 -1XX +7 -2XX +8 -1XX +5 -1XX +7 invalidated
umi CACGTAGCGA = 338 reads: +400 validated
umi CACTCTCCTC = 463 reads: -78 +1 -4XX +317 invalidated
umi CAGACTCCCG = 343 reads: +400 validated
umi CAGGACTTTG = 275 reads: +400 validated
umi CAGTCTTTTC = 181 reads: +400 validated
umi CATAACTGAC = 306 reads: +400 validated
umi CATACTACTG = 350 reads: +400 validated
umi CATCAATCTT = 285 reads: +400 validated
umi CATCCACACA = 233 reads: +400 validated
umi CATCCGTTAT = 347 reads: +400 validated
umi CATTTGCGGT = 216 reads: +400 validated
umi CCACCCGTTT = 282 reads: +400 validated
umi CCATGACCTA = 329 reads: -54X +346 invalidated
umi CCCAGTTGGT = 343 reads: +400 validated
umi CCCCGTTGTG = 156 reads: +400 validated
umi CCCGAGAAGT = 539 reads: -363X +1 -2XX +2 -1XX +7 -2XX +8 -1XX +5 -1XX +7 invalidated
umi CCCTCGCCCC = 322 reads: +400 validated
umi CCCTGTTCCG = 405 reads: +400 validated
umi CCGATCCGAA = 343 reads: +400 validated
umi CCGGCATCTG = 312 reads: +400 validated
umi CCGGCTTATT = 376 reads: +400 validated
umi CCGGGGACGT = 320 reads: +400 validated
umi CCGGTGCGTA = 287 reads: +400 validated
umi CCGTAACCGG = 324 reads: +400 validated
umi CCTAAAGCTT = 337 reads: +400 validated
umi CCTTCCGCGC = 351 reads: +400 validated
umi CGAAACAGTT = 386 reads: +400 validated
umi CGACCTACGT = 531 reads: +400 validated
umi CGATGACGGT = 329 reads: +400 validated
umi CGCACACAGT = 242 reads: +400 validated
umi CGCTCAGCGA = 350 reads: +128 -1XX +271 invalidated
umi CGCTCGTGTG = 309 reads: +400 validated
umi CGGCACCGGA = 304 reads: +400 validated
umi CGGGGTTGCG = 220 reads: -367 +1 -1X +7 -2X +8 -1XX +5 -1XX +7 invalidated
umi CGTCGTCAAC = 243 reads: +400 validated
umi CGTCGTTCTG = 283 reads: +400 validated
umi CGTCTAGGGC = 261 reads: +400 validated
umi CGTGGAGTCT = 475 reads: +400 validated
umi CGTGGCACAA = 211 reads: +400 validated
umi CGTGTTTCTT = 245 reads: +400 validated
umi CTACGTTTCA = 248 reads: +400 validated
umi CTAGCTCGTA = 340 reads: +400 validated
umi CTATATTCGT = 166 reads: +400 validated
umi CTCAGAGGCC = 226 reads: +400 validated
umi CTGATATATG = 181 reads: +400 validated
umi CTGATTGTCG = 155 reads: +400 validated
umi CTGGCACCGT = 461 reads: +400 validated
umi CTTCTCTGCT = 332 reads: +400 validated
umi CTTTTATATT = 325 reads: +400 validated
umi CTTTTTTCCT = 331 reads: +400 validated
umi GACCGTCCAT = 288 reads: +400 validated
umi GACTTGATCG = 376 reads: +400 validated
umi GAGTCCCTAT = 236 reads: +400 validated
umi GATACTTCAC = 271 reads: +400 validated
umi GATCTAATTG = 302 reads: +400 validated
umi GCAACGCGGT = 397 reads: +400 validated
umi GCACCTATTC = 318 reads: +400 validated
umi GCAGCGTGCC = 248 reads: +400 validated
umi GCCAAACCCC = 287 reads: +400 validated
umi GCCTCCGCCA = 345 reads: +400 validated
umi GCGCATCAGT = 343 reads: +400 validated
umi GCGGCTACGG = 350 reads: +400 validated
umi GCTAGTAGCT = 320 reads: +400 validated
umi GCTAGTGTAT = 312 reads: +400 validated
umi GGCTTACTCC = 320 reads: +400 validated
umi GGGCTCGAAG = 279 reads: +400 validated
umi GGGCTGTAAT = 249 reads: +400 validated
umi GGTCTCTCCG = 314 reads: +400 validated
umi GTCACTTACC = 349 reads: +400 validated
umi GTTGTTTGGC = 253 reads: +400 validated
umi TACAATTGCT = 534 reads: -363X +1 -2XX +2 -1XX +7 -2XX +8 -1XX +5 -1XX +7 invalidated
umi TACCGCCCAC = 279 reads: +400 validated
umi TAGACCGTCT = 134 reads: +400 validated
umi TCCACTATTA = 238 reads: +400 validated
umi TCGTCGACGC = 274 reads: +237 -1XX +162 invalidated
umi TCGTTTCTCG = 263 reads: +315 -1XX +84 invalidated
umi TCTTATTGTC = 218 reads: +400 validated
umi TCTTTGTCCA = 481 reads: -363X +1 -2XX +2 -1XX +7 -2XX +8 -1XX +5 -1XX +7 invalidated
umi TGCACAACTA = 299 reads: +400 validated
umi TGCTGACCCA = 373 reads: +400 validated
umi TGCTTTCATG = 257 reads: +400 validated
umi TGGACCGAGA = 293 reads: +400 validated
umi TGGACGGCGG = 388 reads: +400 validated
umi TGTCTAGGGT = 326 reads: +400 validated
umi TGTTGGGGCG = 352 reads: +400 validated
umi TTAAGCTTTA = 220 reads: +400 validated
umi TTACAGTCAT = 323 reads: +400 validated
umi TTCAGTCACT = 273 reads: +400 validated
umi TTCGACGGGA = 306 reads: +400 validated
umi TTCGCACAGC = 296 reads: +400 validated
umi TTCGTACGTC = 516 reads: -363X +1 -2XX +2 -1XX +7 -2XX +8 -1XX +5 -1XX +7 invalidated
umi TTCTAGAGCC = 328 reads: +400 validated
umi TTTGTCATTC = 281 reads: +400 validated

GOOD CONTIGS

TIG 1[bases=571]
35-395 ==> 0-360 on |265|IGKV2-28|L-REGION+V-REGION| [len=360] (mis=2)
397-435 ==> 0-38 on |215|IGKJ3|J-REGION| [len=38] (mis=0)
435-571 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 112 umis using 5187 reads
cdr3 = CMQALQTPLFTF at 371, score = 8 + 8
umis assigned: [5, 64, 67, 73, 82, 120, 137, 159, 188, 200] and 110 others
of which 120 are surviving nonsolos
reads assigned: 37296
start codons at 35, 68, 104, 192, 354, 374, 477
confident = true

REJECT CONTIGS

TIG 1[bases=490]
4-120 ==> 232-348 on rc of segment before IGHJ5 exon 1 [len=348] (mis=0)
170-327 ==> 0-157 on rc of segment before IGHJ3P exon 1 [len=157] (mis=0)
325-388 ==> 0-63 on |59|IGHJ6|J-REGION| [len=63] (mis=0)
388-490 ==> 0-102 on |6|IGHD|C-REGION| [len=1289] (mis=0)
umis assigned: [250, 894, 1248]
of which 3 are surviving nonsolos
reads assigned: 532
start codons at 17, 177, 211, 250, 305, 345, 406, 467
confident = false
did not find CDR3
now this is a cell
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.49 = TTCCCAGTCTAGAGTC-1

using 91 reads

====================================================================================

graph has 108 edges initially, 2 edges after simplification

total ucounts = 2
nonsolo ucounts = 2[4, 87]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.51 = TTCCCAGTCTATCCTA-1

using 16 reads

====================================================================================

graph has 8 edges initially, 2 edges after simplification

total ucounts = 1
nonsolo ucounts = 1[16]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.59 = TTCCCAGTCTCTAAGG-1

using 16 reads

====================================================================================

graph has 24 edges initially, 2 edges after simplification

total ucounts = 1
nonsolo ucounts = 1[16]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.62 = TTCCCAGTCTCTGCTG-1

using 3250 reads

====================================================================================

graph has 4240 edges initially, 44 edges after simplification

total ucounts = 1366
nonsolo ucounts = 656[2^310, 3^132, 4^94, 5^49, 6^24, 7^16, 8^8, 9^9, 10^3, 11^2, 13^6, 15, 23, 334]
surviving nonsolo ucounts = 1[334]
ids = [1052]

====================================================================================

UMI info for barcode TTCCCAGTCTCTGCTG-1 contig 1 = CCAAACAGAG...
umi TATCCGTGTA = 338 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=638]
39-391 ==> 0-352 on |333|IGLV10-54|L-REGION+V-REGION| [len=352] (mis=5)
389-427 ==> 0-38 on |313|IGLJ3|J-REGION| [len=38] (mis=0)
427-638 ==> 0-211 on |307|IGLC3|C-REGION| [len=317] (mis=0)
junction support: 1 umis using 57 reads
cdr3 = CSAWDSSLSAWVF at 360, score = 8 + 8
umis assigned: [1052]
of which 1 are surviving nonsolos
reads assigned: 333
start codons at 39, 368
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.77 = TTCGAAGAGACCGGAT-1

using 308 reads

====================================================================================

graph has 64 edges initially, 2 edges after simplification

total ucounts = 5
nonsolo ucounts = 2[2, 303]
surviving nonsolo ucounts = 1[303]
ids = [0]

====================================================================================

UMI info for barcode TTCGAAGAGACCGGAT-1 contig 1 = TGGGAGACTC...
umi AGCGCGGTAG = 299 reads: +394 validated

GOOD CONTIGS

TIG 1[bases=554]
24-375 ==> 0-351 on |233|IGKV1-5|L-REGION+V-REGION| [len=351] (mis=12)
379-418 ==> 0-39 on |214|IGKJ2|J-REGION| [len=39] (mis=3)
418-554 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 47 reads
cdr3 = CQHFHSYSRMFTF at 351, score = 8 + 7
umis assigned: [0]
of which 1 are surviving nonsolos
reads assigned: 297
start codons at 24, 30, 86, 99, 235, 238, 331, 378, 460
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.81 = TTCGAAGAGAGTACAT-1

using 274 reads

====================================================================================

graph has 106 edges initially, 2 edges after simplification

total ucounts = 3
nonsolo ucounts = 1[272]
surviving nonsolo ucounts = 1[272]
ids = [1]

====================================================================================

UMI info for barcode TTCGAAGAGAGTACAT-1 contig 1 = GGGGAGGAAC...
umi GCAGTCCTGG = 274 reads: +379 validated

GOOD CONTIGS

TIG 1[bases=551]
0-36 ==> 61-97 on |280|IGKV3-15|5'UTR| [len=97] (mis=0)
36-381 ==> 0-345 on |281|IGKV3-15|L-REGION+V-REGION| [len=345] (mis=0)
378-415 ==> 0-37 on |216|IGKJ4|J-REGION| [len=37] (mis=4)
415-551 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 42 reads
cdr3 = CQQYNNWPLF at 357, score = 9 + 7
umis assigned: [1]
of which 1 are surviving nonsolos
reads assigned: 269
start codons at 36, 105, 241, 457
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.83 = TTCGAAGAGATACACA-1

using 165 reads

====================================================================================

graph has 68 edges initially, 2 edges after simplification

total ucounts = 6
nonsolo ucounts = 3[3, 5, 154]
surviving nonsolo ucounts = 1[154]
ids = [2]

====================================================================================

UMI info for barcode TTCGAAGAGATACACA-1 contig 1 = AGTCTGGGCC...
umi ACACGTTATA = 142 reads: +382 validated

GOOD CONTIGS

TIG 1[bases=589]
0-40 ==> 211-251 on |358|IGLV3-21|5'UTR| [len=251] (mis=0)
40-385 ==> 0-345 on |359|IGLV3-21|L-REGION+V-REGION| [len=351] (mis=1)
384-422 ==> 0-38 on |311|IGLJ2|J-REGION| [len=38] (mis=0)
422-589 ==> 0-167 on |306|IGLC2|C-REGION| [len=317] (mis=0)
junction support: 1 umis using 31 reads
cdr3 = CQVWDSSSDHVVF at 355, score = 8 + 8
umis assigned: [2]
of which 1 are surviving nonsolos
reads assigned: 139
start codons at 40, 101, 239, 242, 338, 383
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.84 = TTCGAAGAGATCCGAG-1

using 78 reads

====================================================================================

graph has 78 edges initially, 2 edges after simplification

total ucounts = 21
nonsolo ucounts = 12[2^3, 3, 4, 5, 6^2, 7, 10, 11^2]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.92 = TTCGAAGAGCCCGAAA-1

using 893 reads

====================================================================================

graph has 1014 edges initially, 6 edges after simplification

total ucounts = 292
nonsolo ucounts = 116[2^49, 3^25, 4^20, 5^9, 6^6, 7, 9, 12, 13^2, 64, 265]
surviving nonsolo ucounts = 2[64, 265]
ids = [263, 202]

====================================================================================

UMI info for barcode TTCGAAGAGCCCGAAA-1 contig 1 = AATTAGGACT...
umi GTAGGTCCCA = 268 reads: +397 validated
umi TCTCCCTCCA = 58 reads: -393X +4 invalidated

GOOD CONTIGS

TIG 1[bases=563]
0-30 ==> 0-30 on |262|IGKV2-24|5'UTR| [len=30] (mis=0)
30-390 ==> 0-360 on |263|IGKV2-24|L-REGION+V-REGION| [len=360] (mis=9)
389-427 ==> 0-38 on |213|IGKJ1|J-REGION| [len=38] (mis=2)
427-563 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 27 reads
cdr3 = CMQNTQFPRTF at 366, score = 9 + 8
umis assigned: [202, 263]
of which 2 are surviving nonsolos
reads assigned: 321
start codons at 30, 63, 99, 187, 349, 369, 469
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.106 = TTCGAAGAGGGATACC-1

using 25787 reads

====================================================================================

graph has 16593 edges initially, 362 edges after simplification

total ucounts = 3810
nonsolo ucounts = 2718[2^549, 3^361, 4^306, 5^225, 6^218, 7^186, 8^157, 9^125, 10^83, 11^111, 12^87, 13^65, 14^62, 15^42, 16^23, 17^25, 18^19, 19^11, 20^13, 21^6, 22^2, 23^2, 24^6, 25^3, 27^2, 28, 29, 30^2, 34, 37, 46, 57, 71, 109, 128, 170, 227, 261, 285, 313, 325, 331^2, 335, 343^2, 382, 397, 421, 436, 570, 705, 868]
surviving nonsolo ucounts = 23[20, 21, 71, 109, 128, 170, 227, 261, 285, 313, 325, 331^2, 335, 343^2, 382, 397, 421, 436, 570, 705, 868]
ids = [2527, 1523, 2175, 2521, 2618, 301, 1703, 2176, 711, 1235, ...]

====================================================================================

UMI info for barcode TTCGAAGAGGGATACC-1 contig 1 = TGGGGACTCC...
umi CAAGTGCCCT = 437 reads: +436 validated
umi CCTATTGCGC = 20 reads: +336 -100 non-validated
umi GGTTAATCTA = 107 reads: +436 validated
umi GGTTCCCTGT = 20 reads: -77 +291 -68 non-validated
umi GTCGGCTATA = 128 reads: +436 validated
umi GTTCGCCAGC = 331 reads: +436 validated
umi TCGTGTCAAA = 329 reads: +436 validated
umi TTTACTCAGC = 327 reads: +436 validated

UMI info for barcode TTCGAAGAGGGATACC-1 contig 2 = GTCAGTCTCA...
umi ACACCCATGG = 160 reads: -358X +2 -3XX +2 -3XX +1 -3XX +1 -1XX +1 -1XX +1 -3XX +1 -1XX +2 -4XX invalidated
umi ACTCTTCTAT = 315 reads: -358X +2 -3XX +2 -3XX +1 -3XX +1 -1XX +1 -1XX +1 -3XX +1 -1XX +2 -4XX invalidated
umi AGTAATCCCA = 283 reads: +388 validated
umi CAGTAGCTGA = 316 reads: +388 validated
umi CGGTACGAGC = 228 reads: +388 validated
umi GATGCGCGGG = 66 reads: -358 +2 -3XX +2 -3XX +1 -3XX +1 -1XX +1 -1XX +1 -3XX +1 -1XX +2 -4XX invalidated
umi GATGCGTATT = 261 reads: +388 validated
umi GCGCTAGCTT = 392 reads: -358X +2 -3XX +2 -3XX +1 -3XX +1 -1XX +1 -1XX +1 -3XX +1 -1XX +2 -4XX invalidated
umi GGACGACCTC = 676 reads: -358X +2 -3XX +2 -3XX +1 -3XX +1 -1XX +1 -1XX +1 -3XX +1 -1XX +2 -4XX invalidated
umi GTTAACCAGG = 366 reads: -358X +2 -3XX +2 -3XX +1 -3XX +1 -1XX +1 -1XX +1 -3XX +1 -1XX +2 -4XX invalidated
umi TGAAACAGTA = 373 reads: -358X +2 -3XX +2 -3XX +1 -3XX +1 -1XX +1 -1XX +1 -3XX +1 -1XX +2 -4XX invalidated
umi TTCTTCGTCG = 346 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=528]
21-379 ==> 0-358 on |98|IGHV2-5|L-REGION+V-REGION| [len=358] (mis=16)
437-457 ==> 32-52 on |49|IGHJ1|J-REGION| [len=52] (mis=1)
457-528 ==> 0-71 on |60|IGHM|C-REGION| [len=1358] (mis=0)
junction support: 6 umis using 141 reads
cdr3 = CAHISTLFRSAYYRPYLDFW at 366, score = 7 + 6
umis assigned: [1075, 1523, 2521, 2527, 2618, 2705, 3207, 3738]
of which 8 are surviving nonsolos
reads assigned: 1669
start codons at 21, 65, 244, 247, 327, 336
confident = true

TIG 2[bases=547]
0-23 ==> 0-23 on |252|IGKV1D-39|5'UTR| [len=23] (mis=0)
23-376 ==> 0-353 on |253|IGKV1D-39|L-REGION+V-REGION| [len=353] (mis=12)
374-411 ==> 0-37 on |216|IGKJ4|J-REGION| [len=37] (mis=1)
411-547 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 5 umis using 238 reads
cdr3 = CQQGYTTPLSF at 350, score = 9 + 8
umis assigned: [301, 520, 711, 1235, 1703, 2175, 2176, 2310, 2409, 2677] and 2 others
of which 12 are surviving nonsolos
reads assigned: 3724
start codons at 23, 29, 85, 98, 234, 453
confident = true

REJECT CONTIGS

TIG 1[bases=391]
0-21 ==> 327-348 on rc of segment before IGHJ5 exon 1 [len=348] (mis=0)
71-228 ==> 0-157 on rc of segment before IGHJ3P exon 1 [len=157] (mis=0)
226-289 ==> 0-63 on |737|IGHJ6|J-REGION| [len=63] (mis=0)
289-391 ==> 0-102 on |6|IGHD|C-REGION| [len=1289] (mis=0)
umis assigned: [675]
of which 1 are surviving nonsolos
reads assigned: 341
start codons at 78, 112, 151, 206, 246, 307, 368
confident = false
did not find CDR3
now this is a cell
paired!

ACATATTACTGTGCGCACATCTCCACTCTTTTCCGGAGTGCTTATTATCGGCCCTACTTAGATTTTTGGGGCCAGGGAGTCCTGGTCTCCGTCTCCTCAG <==> ATCAACTGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGGGTTACACTACCCCTCTCTCTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.114 = TTCGAAGAGTTGTAGA-1

using 1128 reads

====================================================================================

graph has 1682 edges initially, 14 edges after simplification

total ucounts = 514
nonsolo ucounts = 212[2^77, 3^49, 4^31, 5^20, 6^9, 7^7, 8^2, 9^5, 10^5, 11^2, 12^3, 13, 16]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.120 = TTCGAAGCAAGTTCTG-1

using 242 reads

====================================================================================

graph has 136 edges initially, 2 edges after simplification

total ucounts = 11
nonsolo ucounts = 5[2, 3^3, 225]
surviving nonsolo ucounts = 1[225]
ids = [8]

====================================================================================

UMI info for barcode TTCGAAGCAAGTTCTG-1 contig 1 = GGGAATCAGT...
umi GCAGTATGGG = 201 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=505]
0-27 ==> 0-27 on |222|IGKV1-17|5'UTR| [len=27] (mis=1)
27-378 ==> 0-351 on |223|IGKV1-17|L-REGION+V-REGION| [len=351] (mis=19)
377-415 ==> 0-38 on |213|IGKJ1|J-REGION| [len=38] (mis=1)
415-505 ==> 0-90 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 36 reads
cdr3 = CLQYSSSPWTF at 354, score = 9 + 8
umis assigned: [8]
of which 1 are surviving nonsolos
reads assigned: 200
start codons at 27, 33, 102, 238, 457
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.121 = TTCGAAGCAATGGAGC-1

using 61 reads

====================================================================================

graph has 60 edges initially, 4 edges after simplification

total ucounts = 22
nonsolo ucounts = 12[2^3, 3^3, 4, 5^3, 7, 10]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.123 = TTCGAAGCACAACGCC-1

using 353 reads

====================================================================================

graph has 162 edges initially, 2 edges after simplification

total ucounts = 8
nonsolo ucounts = 3[6, 11, 331]
surviving nonsolo ucounts = 1[331]
ids = [5]

====================================================================================

REJECT CONTIGS

TIG 1[bases=565]
0-75 ==> 5533-5608 on segment before IGKV2OR2-1 exon 1 [len=6000] (mis=2)
30-390 ==> 0-360 on |265|IGKV2-28|L-REGION+V-REGION| [len=360] (mis=3)
391-429 ==> 0-38 on |217|IGKJ5|J-REGION| [len=38] (mis=0)
429-565 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
cdr3 = CWDLLLHASSTNSSITF at 350, score = 4 + 8
umis assigned: [5]
of which 1 are surviving nonsolos
reads assigned: 324
start codons at 30, 63, 99, 187, 349, 369, 471
confident = false
not full
frameshifted full length transcript of length 565
VJ delta = 30
not full
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.128 = TTCGAAGCACGCTTTC-1

using 278 reads

====================================================================================

graph has 101 edges initially, 2 edges after simplification

total ucounts = 2
nonsolo ucounts = 1[277]
surviving nonsolo ucounts = 1[277]
ids = [1]

====================================================================================

UMI info for barcode TTCGAAGCACGCTTTC-1 contig 1 = GTGGGTCCAG...
umi GGTTTGAAGT = 260 reads: +373 validated

GOOD CONTIGS

TIG 1[bases=562]
0-35 ==> 8-43 on |362|IGLV3-25|5'UTR| [len=43] (mis=0)
35-372 ==> 0-337 on |363|IGLV3-25|L-REGION+V-REGION| [len=337] (mis=7)
370-408 ==> 0-38 on |313|IGLJ3|J-REGION| [len=38] (mis=3)
408-562 ==> 0-154 on |307|IGLC3|C-REGION| [len=317] (mis=0)
junction support: 1 umis using 46 reads
cdr3 = CQSPDSQGVF at 350, score = 8 + 8
umis assigned: [1]
of which 1 are surviving nonsolos
reads assigned: 255
start codons at 35, 96, 165, 183
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.130 = TTCGAAGCACTTCTGC-1

using 19961 reads

====================================================================================

graph has 6461 edges initially, 54 edges after simplification

total ucounts = 588
nonsolo ucounts = 271[2^79, 3^39, 4^29, 5^21, 6^10, 7^11, 8^2, 9^2, 10, 11^2, 13, 14, 15^2, 17, 27, 50, 67, 85, 111, 116, 120, 128, 131, 135, 149, 158, 167, 176, 180, 183, 187, 188, 207, 220, 223, 225, 232, 233, 238, 245, 246, 252, 257, 258, 259, 260, 261, 272, 274^2, 276, 283, 284, 286, 291, 294, 298, 299, 303^2, 306, 308^2, 310, 311, 312, 315, 322, 323^2, 327, 332, 334, 338^2, 360, 379, 411, 417, 423, 482, 493, 665, 723]
surviving nonsolo ucounts = 65[67, 116, 120, 128, 131, 135, 149, 158, 167, 176, 180, 183, 187, 188, 207, 220, 223, 225, 232, 233, 238, 245, 246, 252, 257, 258, 259, 260, 261, 272, 274^2, 276, 283, 284, 286, 291, 294, 298, 299, 303^2, 306, 308^2, 310, 311, 312, 315, 322, 323^2, 327, 332, 334, 338^2, 360, 379, 411, 417, 423, 482, 493, 723]
ids = [335, 31, 209, 33, 371, 47, 460, 14, 507, 538, ...]

====================================================================================

UMI info for barcode TTCGAAGCACTTCTGC-1 contig 1 = AGGAGTCAGA...
umi AAAAGGCTCC = 307 reads: +388 validated
umi AAATGTTCGC = 164 reads: +231 -1XX +148 -8 invalidated
umi ACAGGATCAC = 469 reads: -358X +2 -2XX +1 -12XX +2 -5XX +2 -2XX +1 -1XX invalidated
umi ACATACCCGC = 412 reads: +388 validated
umi ACGCATTCAA = 296 reads: -358X +2 -2X +1 -12X +2 -5XX +2 -2XX +1 -1XX invalidated
umi AGCGTCCACC = 305 reads: +388 validated
umi AGGGCGCTTA = 242 reads: +388 validated
umi ATCCATCGCG = 323 reads: +388 validated
umi ATCCCAATGC = 335 reads: +388 validated
umi ATCTCGCGCA = 295 reads: +388 validated
umi ATTTGGTAGC = 281 reads: +388 validated
umi CACTACGGCG = 256 reads: +388 validated
umi CATGCCAAGG = 325 reads: +388 validated
umi CCCTAGGGTA = 485 reads: +388 validated
umi CCTCCCTCCT = 259 reads: +388 validated
umi CGTGTGACAG = 303 reads: +388 validated
umi CTATGCCTCC = 401 reads: -358X +2 -2X +1 -12XX +2 -5XX +2 -2XX +1 -1XX invalidated
umi CTATGCGGCC = 341 reads: +388 validated
umi CTTCCATCGT = 260 reads: +388 validated
umi CTTGGGGCAC = 230 reads: +388 validated
umi GAGTGATCAG = 272 reads: +388 validated
umi GATGGTATTG = 248 reads: +388 validated
umi GCGAGACATA = 309 reads: +388 validated
umi GCGAGCCGGC = 298 reads: +388 validated
umi GCTGCCGTAA = 327 reads: -358X +2 -2X +1 -12XX +2 -5XX +2 -2XX +1 -1XX invalidated
umi GGCTTCATCT = 131 reads: +388 validated
umi GGGACATATA = 221 reads: +388 validated
umi GGTAAAGTCC = 309 reads: -358 +2 -2XX +1 -12XX +2 -5XX +2 -2XX +1 -1XX invalidated
umi GTCCCTACTT = 259 reads: +388 validated
umi GTTAACGACA = 241 reads: +388 validated
umi TAACTACACC = 355 reads: -358X +2 -2XX +1 -12XX +2 -5XX +2 -2XX +1 -1XX invalidated
umi TAAGGACATT = 323 reads: +388 validated
umi TACTTCCTCA = 277 reads: +388 validated
umi TAGGTCCTCT = 309 reads: +388 validated
umi TAGTTCCTGG = 314 reads: +388 validated
umi TCATGCACGC = 147 reads: +383 -1 +4 non-validated
umi TCCACTATCC = 386 reads: -358X +2 -2XX +1 -12XX +2 -5XX +2 -2XX +1 -1XX invalidated
umi TCCATCACTG = 336 reads: +388 validated
umi TGCCTTTTCC = 169 reads: +388 validated
umi TGTCTGCCTG = 315 reads: +388 validated
umi TTAGCAATTG = 172 reads: -358 +2 -2X +1 -12XX +2 -5XX +2 -2XX +1 -1XX invalidated
umi TTCCTTGGCC = 290 reads: +388 validated
umi TTCGTGCCTA = 730 reads: +388 validated
umi TTGTCCTATT = 303 reads: +388 validated

UMI info for barcode TTCGAAGCACTTCTGC-1 contig 2 = GGGGATCACT...
umi AAATAGGCGG = 287 reads: +415 validated
umi AACCAATCAG = 278 reads: +415 validated
umi AATAACATCC = 115 reads: +415 validated
umi AGACCAACTT = 208 reads: +415 validated
umi CAGGACAGCT = 262 reads: +415 validated
umi CCACCTCCTC = 285 reads: +415 validated
umi CCCGCACGCT = 118 reads: +415 validated
umi CGTCGCTTGT = 277 reads: +415 validated
umi CTCATCGCTC = 182 reads: +415 validated
umi CTTTTCTCAT = 225 reads: +415 validated
umi GAATTGCTTA = 311 reads: +415 validated
umi GCACCATCAG = 360 reads: +415 validated
umi GCACTTCGCC = 60 reads: -415 non-validated
umi GCCAAACTCT = 234 reads: +415 validated
umi GTTAGCATCA = 250 reads: +415 validated
umi GTTGGACCAG = 188 reads: +415 validated
umi TATGCGCTTT = 1127 reads: -379X +2 -1XX +1 -4XX +3 -7XX +2 -4XX +1 -6XX +1 -1XX +3 invalidated
umi TCCGCTCCAG = 179 reads: +415 validated
umi TCTACCGGGA = 231 reads: +415 validated
umi TCTGTGCGTT = 186 reads: +415 validated

GOOD CONTIGS

TIG 1[bases=551]
0-27 ==> 154-181 on |232|IGKV1-5|5'UTR| [len=181] (mis=0)
27-366 ==> 0-339 on |233|IGKV1-5|L-REGION+V-REGION| [len=351] (mis=20)
376-415 ==> 0-39 on |214|IGKJ2|J-REGION| [len=39] (mis=6)
415-551 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 34 umis using 1616 reads
cdr3 = CQQYDTFPYTF at 354, score = 8 + 8
umis assigned: [1, 14, 49, 51, 64, 91, 101, 128, 129, 134] and 34 others
of which 44 are surviving nonsolos
reads assigned: 13099
start codons at 27, 33, 102, 334, 364, 457
confident = true

TIG 2[bases=637]
62-415 ==> 0-353 on |736|IGHV1-8|L-REGION+V-REGION| [len=353] (mis=21)
437-477 ==> 6-46 on |54|IGHJ4|J-REGION| [len=46] (mis=1)
477-637 ==> 0-160 on |1|IGHA1|C-REGION| [len=1058] (mis=0)
junction support: 18 umis using 413 reads
cdr3 = CARGKDDSGRSDYW at 404, score = 9 + 6
umis assigned: [10, 16, 31, 80, 185, 196, 209, 266, 283, 306] and 10 others
of which 19 are surviving nonsolos
reads assigned: 4784
start codons at 62, 265, 269, 297, 326, 359, 420, 531
confident = true

REJECT CONTIGS

TIG 1[bases=651]
3-172 ==> 0-169 on rc of segment before IGKV3-11 exon 1 [len=169] (mis=8)
178-432 ==> 55-309 on |279|IGKV3-11|L-REGION+V-REGION| [len=345] (mis=31)
471-508 ==> 0-37 on |216|IGKJ4|J-REGION| [len=37] (mis=4)
508-625 ==> 0-117 on rc of segment before IGKJ4 exon 1 [len=280] (mis=16)
cdr3 = CQQRCNWPRGTF at 444, score = 6 + 7
umis assigned: [33, 47]
of which 2 are surviving nonsolos
reads assigned: 251
start codons at 14, 139, 455, 492, 573
confident = false
not full
VJ delta = 13
not full
now this is a cell
paired!

AGACCTGAGGACACGGCCGTCTATTACTGTGCGAGAGGCAAAGATGATAGTGGCCGAAGCGACTACTGGGGCCAGGGAACCCTGATCACCGTCTCCTCAG <==> ATCAGTAGCCTGCAGCCTGATGATTTCGCAACTTATTACTGCCAGCAGTATGACACTTTCCCCTACACTTTTGGCCAGGGGACCAAGCTGGACATCAGAC

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.137 = TTCGAAGCAGCTATTG-1

using 308 reads

====================================================================================

graph has 148 edges initially, 2 edges after simplification

total ucounts = 10
nonsolo ucounts = 4[6, 8, 10, 278]
surviving nonsolo ucounts = 1[278]
ids = [9]

====================================================================================

UMI info for barcode TTCGAAGCAGCTATTG-1 contig 1 = GCTCTCGGAA...
umi TTCTGTGGGT = 284 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=619]
20-374 ==> 0-354 on |341|IGLV2-18|L-REGION+V-REGION| [len=354] (mis=18)
370-408 ==> 0-38 on |311|IGLJ2|J-REGION| [len=38] (mis=3)
408-619 ==> 0-211 on |306|IGLC2|C-REGION| [len=317] (mis=1)
junction support: 1 umis using 48 reads
cdr3 = CSSYTSSNTLVF at 344, score = 7 + 9
umis assigned: [9]
of which 1 are surviving nonsolos
reads assigned: 276
start codons at 20, 237
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.138 = TTCGAAGCAGCTCCGA-1

using 441 reads

====================================================================================

graph has 232 edges initially, 2 edges after simplification

total ucounts = 9
nonsolo ucounts = 6[2, 7, 8, 10, 138, 273]
surviving nonsolo ucounts = 2[138, 273]
ids = [4, 2]

====================================================================================

UMI info for barcode TTCGAAGCAGCTCCGA-1 contig 1 = GAGAGAGGAG...
umi AATGAATATA = 259 reads: +424 validated
umi CACCTTGGGC = 137 reads: +424 validated

GOOD CONTIGS

TIG 1[bases=617]
0-73 ==> 6-79 on |119|IGHV3-21|5'UTR| [len=79] (mis=0)
73-426 ==> 0-353 on |120|IGHV3-21|L-REGION+V-REGION| [len=353] (mis=18)
450-497 ==> 16-63 on |737|IGHJ6|J-REGION| [len=63] (mis=1)
497-617 ==> 0-120 on |43|IGHG2|C-REGION| [len=977] (mis=0)
junction support: 2 umis using 43 reads
cdr3 = CARDRAATARLGGMDVW at 415, score = 9 + 7
umis assigned: [2, 4]
of which 2 are surviving nonsolos
reads assigned: 391
start codons at 73, 224, 229, 376, 454
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 105.142 = TTCGAAGCAGGTGGAT-1

using 176 reads

====================================================================================

graph has 72 edges initially, 2 edges after simplification

total ucounts = 4
nonsolo ucounts = 2[2, 172]
surviving nonsolo ucounts = 1[172]
ids = [0]

====================================================================================

UMI info for barcode TTCGAAGCAGGTGGAT-1 contig 1 = GCTCTGCTTC...
umi AATCTTATTG = 165 reads: +394 validated

GOOD CONTIGS

TIG 1[bases=505]
0-51 ==> 0-51 on |320|IGLV1-40|5'UTR| [len=51] (mis=0)
51-407 ==> 0-356 on |321|IGLV1-40|L-REGION+V-REGION| [len=356] (mis=12)
407-445 ==> 0-38 on |309|IGLJ1|J-REGION| [len=38] (mis=1)
445-505 ==> 0-60 on |305|IGLC1|C-REGION| [len=317] (mis=0)
junction support: 1 umis using 28 reads
cdr3 = CQSYDSSLSGLYVF at 375, score = 7 + 8
umis assigned: [0]
of which 1 are surviving nonsolos
reads assigned: 163
start codons at 51, 205, 208, 259, 358, 385, 409
confident = false
NOT paired!
sorting bam, mem = 0.11
running samtools sort -l 8G -o /scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk105-ucc6a7a72ce/files/contig_bam_sorted.bam /scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk105-ucc6a7a72ce/files/contig_bam.bam

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

24.947 seconds used processing barcodes, peak mem = 0.26
