[stdout]

starting vdj_asm_asm, mem = 0.01
available mem = 833.10 GB
/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian assembly main /scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk100-ucc6a7a72ce /scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk100-ucc6a7a72ce/files /scratch/etanis/ST-118/multi/dimitri-multi/journal/SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ.fork0.chnk100.ucc6a7a72ce
n50_n50_rpu = 288

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.0 = TGCCCTAGTGCCTGTG-1

using 12938 reads

====================================================================================

graph has 5214 edges initially, 64 edges after simplification

total ucounts = 774
nonsolo ucounts = 370[2^148, 3^75, 4^50, 5^21, 6^12, 7^9, 8^5, 12, 13^3, 14, 44, 45, 58, 61, 76, 83, 120, 127, 156, 161, 164, 168, 203, 206, 214, 217, 219, 223, 232, 234^2, 237, 243, 244, 254, 262, 269, 270, 272, 274, 278, 279, 286^2, 303, 310, 315, 340, 342, 350, 395, 484, 601, 657, 672]
surviving nonsolo ucounts = 42[58, 61, 76, 83, 127, 156, 161, 164, 168, 203, 206, 214, 217, 219, 223, 232, 234^2, 237, 243, 244, 254, 262, 269, 270, 272, 274, 278, 279, 286^2, 303, 310, 315, 340, 342, 350, 395, 484, 601, 657, 672]
ids = [173, 108, 367, 680, 721, 514, 224, 260, 629, 610, ...]

====================================================================================

UMI info for barcode TGCCCTAGTGCCTGTG-1 contig 1 = GGGAGCATCA...
umi AAATCTTTCG = 257 reads: +432 -4 non-validated
umi ACCTAGTTTT = 236 reads: +436 validated
umi ACGTACCGTT = 234 reads: +436 validated
umi AGTTATGGTC = 283 reads: +436 validated
umi ATTAATGGCG = 57 reads: +372 -1 +7 -1 +55 non-validated
umi ATTCAGCGTT = 289 reads: +436 validated
umi ATTCTTCGTC = 258 reads: +436 validated
umi CAATGTTTAT = 245 reads: +436 validated
umi CAGGTCACTG = 162 reads: +436 validated
umi CATCACGTGT = 308 reads: +436 validated
umi CATTACTCGG = 216 reads: +433 -3 non-validated
umi CGTGTGTGTG = 223 reads: +408 -1 +4 -1 +22 non-validated
umi GACTGATAGC = 284 reads: +436 validated
umi GATCGCGCTC = 218 reads: +436 validated
umi GCCCGATCCA = 316 reads: +436 validated
umi GTCCCAACGA = 158 reads: +436 validated
umi TCATAATTTC = 202 reads: +436 validated
umi TCCATTCGGT = 226 reads: +432 -4 non-validated
umi TCCTCAGAAG = 170 reads: +436 validated
umi TCTCTGTTCC = 202 reads: +436 validated
umi TCTGCGGTCC = 217 reads: +421 -15 non-validated
umi TGCCGATGTG = 79 reads: +366 -70 non-validated
umi TGTGTGTAGA = 252 reads: +436 validated
umi TTCAACGCGA = 125 reads: +285 -1 +148 -2 non-validated
umi TTGTTAGTCT = 268 reads: +436 validated
umi TTTGGTATCA = 271 reads: +436 validated

UMI info for barcode TGCCCTAGTGCCTGTG-1 contig 2 = GGAGTCAGTC...
umi AAATCGATCT = 351 reads: +388 validated
umi ACCTTGCCGC = 593 reads: -268 +2 -2X +116 invalidated
umi CAGGTTCGAT = 341 reads: +388 validated
umi CCACTTTCGA = 168 reads: +388 validated
umi CCCACTCCGT = 303 reads: +388 validated
umi CGACTTAGTC = 260 reads: +388 validated
umi CTCCGCCTGC = 76 reads: +32 -3X +1 -3X +349 invalidated
umi CTGATACGTC = 313 reads: +388 validated
umi CTTATAAGTG = 273 reads: +388 validated
umi GTGTTCTGTT = 396 reads: +388 validated
umi TGTTCGATCC = 484 reads: -352X +4 -1XX +6 -2XX +6 -5XX +7 -1XX +4 invalidated

GOOD CONTIGS

TIG 1[bases=571]
0-64 ==> 0-64 on |66|IGHV1-2|5'UTR| [len=64] (mis=1)
64-417 ==> 0-353 on |67|IGHV1-2|L-REGION+V-REGION| [len=353] (mis=0)
437-500 ==> 0-63 on |737|IGHJ6|J-REGION| [len=63] (mis=2)
500-571 ==> 0-71 on |60|IGHM|C-REGION| [len=1358] (mis=0)
junction support: 20 umis using 310 reads
cdr3 = CARESVYSSSPYYYYYGMDVW at 406, score = 8 + 7
umis assigned: [10, 80, 95, 141, 173, 176, 179, 203, 224, 236] and 16 others
of which 26 are surviving nonsolos
reads assigned: 5661
start codons at 64, 220, 262, 267, 299, 328, 361, 457
confident = true

TIG 2[bases=550]
0-26 ==> 32-58 on |238|IGKV1-9|5'UTR| [len=58] (mis=0)
26-377 ==> 0-351 on |239|IGKV1-9|L-REGION+V-REGION| [len=351] (mis=0)
377-414 ==> 0-37 on |216|IGKJ4|J-REGION| [len=37] (mis=0)
414-550 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 10 umis using 463 reads
cdr3 = CQQLNSYPLTF at 353, score = 9 + 9
umis assigned: [9, 86, 226, 260, 267, 314, 367, 380, 388, 537] and 1 others
of which 11 are surviving nonsolos
reads assigned: 3507
start codons at 26, 32, 88, 237, 456
confident = true

REJECT CONTIGS

TIG 1[bases=842]
2-303 ==> 1172-1473 on rc of segment before IGHD5-5 exon 1 [len=1829] (mis=6)
304-658 ==> 1475-1829 on rc of segment before IGHD5-5 exon 1 [len=1829] (mis=4)
689-740 ==> 0-51 on |57|IGHJ5|J-REGION| [len=51] (mis=0)
740-842 ==> 0-102 on |6|IGHD|C-REGION| [len=1289] (mis=0)
umis assigned: [136, 587]
of which 2 are surviving nonsolos
reads assigned: 430
start codons at 90, 196, 323, 343, 370, 385, 552, 758, 819
confident = false
did not find CDR3
now this is a cell
paired!

TATTACTGTGCGAGAGAGAGCGTGTATAGCAGCAGCCCATACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG <==> ATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTTACCCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.8 = TGCCCTAGTGTCTGAT-1

using 143 reads

====================================================================================

graph has 72 edges initially, 2 edges after simplification

total ucounts = 8
nonsolo ucounts = 3[2, 4, 132]
surviving nonsolo ucounts = 1[132]
ids = [3]

====================================================================================

UMI info for barcode TGCCCTAGTGTCTGAT-1 contig 1 = AGAGCTGCTC...
umi CGGCCCGGGG = 121 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=455]
0-31 ==> 21-52 on |282|IGKV3-20|5'UTR| [len=52] (mis=0)
31-379 ==> 0-348 on |283|IGKV3-20|L-REGION+V-REGION| [len=348] (mis=0)
380-419 ==> 0-39 on |214|IGKJ2|J-REGION| [len=39] (mis=4)
419-455 ==> 0-36 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 25 reads
cdr3 = CQQYGSSPRVTF at 355, score = 9 + 8
umis assigned: [3]
of which 1 are surviving nonsolos
reads assigned: 120
start codons at 31, 239, 365
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.16 = TGCCCTAGTTACGCGC-1

using 337 reads

====================================================================================

graph has 128 edges initially, 2 edges after simplification

total ucounts = 1
nonsolo ucounts = 1[337]
surviving nonsolo ucounts = 1[337]
ids = [0]

====================================================================================

UMI info for barcode TGCCCTAGTTACGCGC-1 contig 1 = TGGGGAGGAG...
umi AAAGGGCCAG = 307 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=497]
32-385 ==> 0-353 on |253|IGKV1D-39|L-REGION+V-REGION| [len=353] (mis=12)
383-420 ==> 0-37 on |216|IGKJ4|J-REGION| [len=37] (mis=1)
420-497 ==> 0-77 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 52 reads
cdr3 = CQQSYTTLLTF at 359, score = 9 + 9
umis assigned: [0]
of which 1 are surviving nonsolos
reads assigned: 305
start codons at 32, 38, 94, 107, 243, 462
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.24 = TGCCCTAGTTCGCTAA-1

using 16 reads

====================================================================================

graph has 10 edges initially, 2 edges after simplification

total ucounts = 5
nonsolo ucounts = 1[12]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.28 = TGCCCTAGTTTCGCTC-1

using 189 reads

====================================================================================

graph has 86 edges initially, 2 edges after simplification

total ucounts = 14
nonsolo ucounts = 3[3, 5, 170]
surviving nonsolo ucounts = 1[170]
ids = [7]

====================================================================================

UMI info for barcode TGCCCTAGTTTCGCTC-1 contig 1 = GAGCTACAAC...
umi GCATATAGGT = 155 reads: +400 validated

GOOD CONTIGS

TIG 1[bases=508]
0-30 ==> 145-175 on |295|IGKV4-1|5'UTR| [len=175] (mis=0)
30-393 ==> 0-363 on |296|IGKV4-1|L-REGION+V-REGION| [len=363] (mis=2)
393-430 ==> 0-37 on |216|IGKJ4|J-REGION| [len=37] (mis=1)
430-508 ==> 0-78 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 27 reads
cdr3 = CQQYYSTPRTF at 369, score = 9 + 8
umis assigned: [7]
of which 1 are surviving nonsolos
reads assigned: 154
start codons at 30, 99, 352, 472
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.34 = TGCCCTATCACATAGC-1

using 49 reads

====================================================================================

graph has 64 edges initially, 2 edges after simplification

total ucounts = 12
nonsolo ucounts = 10[2^4, 3, 4^2, 6, 10, 12]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.37 = TGCCCTATCACCGTAA-1

using 430 reads

====================================================================================

graph has 124 edges initially, 2 edges after simplification

total ucounts = 8
nonsolo ucounts = 3[2, 4, 419]
surviving nonsolo ucounts = 1[419]
ids = [2]

====================================================================================

UMI info for barcode TGCCCTATCACCGTAA-1 contig 1 = GAAGAGCTGC...
umi CGAAACCCGC = 414 reads: +385 validated

GOOD CONTIGS

TIG 1[bases=554]
0-33 ==> 19-52 on |282|IGKV3-20|5'UTR| [len=52] (mis=0)
33-381 ==> 0-348 on |283|IGKV3-20|L-REGION+V-REGION| [len=348] (mis=9)
379-418 ==> 0-39 on |214|IGKJ2|J-REGION| [len=39] (mis=5)
418-554 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 74 reads
cdr3 = CQQYGSSPGTF at 357, score = 9 + 8
umis assigned: [2]
of which 1 are surviving nonsolos
reads assigned: 410
start codons at 33, 241, 367, 460
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.40 = TGCCCTATCACTCCTG-1

using 358 reads

====================================================================================

graph has 176 edges initially, 2 edges after simplification

total ucounts = 18
nonsolo ucounts = 6[2^3, 3, 4, 333]
surviving nonsolo ucounts = 1[333]
ids = [6]

====================================================================================

UMI info for barcode TGCCCTATCACTCCTG-1 contig 1 = GGAGTCAGAC...
umi CCAACGTATT = 332 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=550]
0-26 ==> 155-181 on |232|IGKV1-5|5'UTR| [len=181] (mis=1)
26-377 ==> 0-351 on |233|IGKV1-5|L-REGION+V-REGION| [len=351] (mis=27)
376-414 ==> 0-38 on |213|IGKJ1|J-REGION| [len=38] (mis=6)
414-550 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 44 reads
cdr3 = CQQYNGQSRAF at 353, score = 8 + 7
umis assigned: [6]
of which 1 are surviving nonsolos
reads assigned: 326
start codons at 26, 32, 101, 237, 240, 333, 366, 456
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.43 = TGCCCTATCAGCGACC-1

using 265 reads

====================================================================================

graph has 114 edges initially, 2 edges after simplification

total ucounts = 14
nonsolo ucounts = 4[2^2, 5, 246]
surviving nonsolo ucounts = 1[246]
ids = [6]

====================================================================================

UMI info for barcode TGCCCTATCAGCGACC-1 contig 1 = AAGAGGCAGC...
umi GATACGACTT = 230 reads: +391 validated

GOOD CONTIGS

TIG 1[bases=587]
0-29 ==> 22-51 on |320|IGLV1-40|5'UTR| [len=51] (mis=0)
29-369 ==> 0-340 on |321|IGLV1-40|L-REGION+V-REGION| [len=356] (mis=25)
382-420 ==> 0-38 on |311|IGLJ2|J-REGION| [len=38] (mis=4)
420-587 ==> 0-167 on |306|IGLC2|C-REGION| [len=317] (mis=0)
junction support: 1 umis using 39 reads
cdr3 = CQSYDKSLRGAVF at 353, score = 7 + 8
umis assigned: [6]
of which 1 are surviving nonsolos
reads assigned: 225
start codons at 29, 113, 186, 336, 363
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.46 = TGCCCTATCATCGCTC-1

using 286 reads

====================================================================================

graph has 72 edges initially, 2 edges after simplification

total ucounts = 8
nonsolo ucounts = 4[2^2, 3, 275]
surviving nonsolo ucounts = 1[275]
ids = [2]

====================================================================================

UMI info for barcode TGCCCTATCATCGCTC-1 contig 1 = GGCTTTCTGA...
umi ACGTGCTTCT = 264 reads: +460 validated

GOOD CONTIGS

TIG 1[bases=502]
15-386 ==> 0-371 on |186|IGHV4-34|L-REGION+V-REGION| [len=371] (mis=3)
424-475 ==> 0-51 on |57|IGHJ5|J-REGION| [len=51] (mis=4)
475-502 ==> 0-27 on |40|IGHG1|C-REGION| [len=884] (mis=0)
junction support: 1 umis using 30 reads
cdr3 = CARGHFYFASGSRIPGGVWFDPW at 375, score = 9 + 7
umis assigned: [2]
of which 1 are surviving nonsolos
reads assigned: 262
start codons at 15, 36, 80, 166
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.48 = TGCCCTATCCAAACAC-1

using 370 reads

====================================================================================

graph has 230 edges initially, 2 edges after simplification

total ucounts = 12
nonsolo ucounts = 6[2^3, 3, 27, 328]
surviving nonsolo ucounts = 1[328]
ids = [1]

====================================================================================

UMI info for barcode TGCCCTATCCAAACAC-1 contig 1 = GAGCTGCTCA...
umi AGATCCAAGA = 315 reads: +382 validated

GOOD CONTIGS

TIG 1[bases=501]
0-30 ==> 22-52 on |282|IGKV3-20|5'UTR| [len=52] (mis=0)
30-378 ==> 0-348 on |283|IGKV3-20|L-REGION+V-REGION| [len=348] (mis=4)
374-412 ==> 0-38 on |215|IGKJ3|J-REGION| [len=38] (mis=0)
412-501 ==> 0-89 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 44 reads
cdr3 = CQQYGSLFTF at 354, score = 9 + 8
umis assigned: [1]
of which 1 are surviving nonsolos
reads assigned: 312
start codons at 30, 238, 364, 454
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.49 = TGCCCTATCCACGAAT-1

using 112 reads

====================================================================================

graph has 124 edges initially, 4 edges after simplification

total ucounts = 25
nonsolo ucounts = 15[2^5, 3^4, 4, 5, 7, 12, 17, 35]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.50 = TGCCCTATCCACTGGG-1

using 553 reads

====================================================================================

graph has 212 edges initially, 4 edges after simplification

total ucounts = 14
nonsolo ucounts = 7[2^2, 3, 5, 9, 250, 275]
surviving nonsolo ucounts = 2[250, 275]
ids = [9, 13]

====================================================================================

UMI info for barcode TGCCCTATCCACTGGG-1 contig 1 = AGAGCTGCTC...
umi TTGGCCGTGT = 248 reads: +385 validated

GOOD CONTIGS

TIG 1[bases=468]
0-31 ==> 21-52 on |282|IGKV3-20|5'UTR| [len=52] (mis=0)
31-346 ==> 0-315 on |283|IGKV3-20|L-REGION+V-REGION| [len=348] (mis=26)
378-416 ==> 0-38 on |213|IGKJ1|J-REGION| [len=38] (mis=2)
416-468 ==> 0-52 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 38 reads
cdr3 = CQYYGGSYWTF at 355, score = 9 + 8
umis assigned: [13]
of which 1 are surviving nonsolos
reads assigned: 244
start codons at 31, 156, 365, 458
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.66 = TGCCCTATCTAACGGT-1

using 11425 reads

====================================================================================

graph has 6021 edges initially, 130 edges after simplification

total ucounts = 1405
nonsolo ucounts = 691[2^273, 3^164, 4^91, 5^44, 6^39, 7^13, 8^10, 9^10, 10^4, 13, 14, 20, 57, 73, 98, 100, 110, 158, 159, 162, 166, 169, 170, 173^2, 181, 184, 198, 199^2, 204, 205, 207, 211, 219^2, 226, 228^2, 235, 238, 245, 248, 255, 258, 262, 268, 282, 286, 290, 351, 613]
surviving nonsolo ucounts = 38[73, 98, 100, 110, 158, 159, 162, 166, 169, 170, 173, 181, 184, 198, 199^2, 204, 205, 207, 211, 219^2, 226, 228^2, 235, 238, 245, 248, 255, 258, 262, 268, 282, 286, 290, 351, 613]
ids = [269, 1049, 1225, 655, 200, 380, 67, 343, 1012, 1245, ...]

====================================================================================

UMI info for barcode TGCCCTATCTAACGGT-1 contig 1 = CTGGGCCTCA...
umi AAGGTCGGCT = 162 reads: +376 validated
umi AGAGATCATC = 162 reads: +376 validated
umi AGGTCCTGGT = 193 reads: +376 validated
umi ATACACGTGA = 209 reads: +376 validated
umi ATTACGCGGT = 167 reads: +376 validated
umi GCAACTTGCC = 284 reads: +376 validated
umi GGTCTTGTCT = 268 reads: +376 validated
umi GTAGCCACAA = 239 reads: +376 validated
umi TAACACCTTC = 228 reads: +376 validated
umi TACGTGTTGT = 261 reads: +376 validated
umi TACTAAGTGG = 96 reads: +376 validated
umi TATTACCTCG = 230 reads: +376 validated
umi TGCGCGTACA = 104 reads: +112 -1XX +263 invalidated
umi TGGCGTCCGA = 170 reads: +376 validated
umi TGTATAGGTT = 202 reads: +376 validated
umi TTAGCAGAGC = 236 reads: +376 validated
umi TTGTACATCA = 178 reads: +363 -3 +10 non-validated

UMI info for barcode TGCCCTATCTAACGGT-1 contig 2 = GGGACTCAAC...
umi AAACTGTATG = 203 reads: +415 validated
umi AACATTCGTA = 199 reads: +415 validated
umi AGCTAAGTTC = 354 reads: +415 validated
umi CCCGTATCAG = 241 reads: +406 -5 +4 non-validated
umi GAGCAGTCCA = 183 reads: +415 validated
umi TAACGGTCTT = 83 reads: -373X +1 -1X +3 -2XX +9 -1XX +2 -1XX +3 -2XX +17 invalidated

GOOD CONTIGS

TIG 1[bases=624]
0-37 ==> 15-52 on |348|IGLV3-1|5'UTR| [len=52] (mis=0)
37-377 ==> 0-340 on |349|IGLV3-1|L-REGION+V-REGION| [len=346] (mis=0)
375-413 ==> 0-38 on |311|IGLJ2|J-REGION| [len=38] (mis=0)
413-624 ==> 0-211 on |306|IGLC2|C-REGION| [len=317] (mis=0)
junction support: 16 umis using 535 reads
cdr3 = CQAWDSSTVVF at 352, score = 6 + 8
umis assigned: [67, 200, 235, 266, 343, 812, 936, 958, 1010, 1048] and 7 others
of which 17 are surviving nonsolos
reads assigned: 3333
start codons at 37, 42, 98, 185, 331, 335
confident = true

TIG 2[bases=544]
58-411 ==> 0-353 on |736|IGHV1-8|L-REGION+V-REGION| [len=353] (mis=1)
412-430 ==> 0-18 on |35|IGHD6-6|D-REGION| [len=18] (mis=2)
425-473 ==> 0-48 on |55|IGHJ4|J-REGION| [len=48] (mis=3)
473-544 ==> 0-71 on |60|IGHM|C-REGION| [len=1358] (mis=0)
junction support: 4 umis using 68 reads
cdr3 = CARAEYSSSDFDYW at 400, score = 9 + 7
umis assigned: [15, 37, 223, 517, 789, 1012]
of which 6 are surviving nonsolos
reads assigned: 1243
start codons at 58, 209, 256, 261, 265, 293, 322, 355
confident = true

REJECT CONTIGS

TIG 1[bases=636]
0-36 ==> 0-36 on |330|IGLV1-51|5'UTR| [len=36] (mis=0)
36-389 ==> 0-353 on |331|IGLV1-51|L-REGION+V-REGION| [len=353] (mis=2)
387-425 ==> 0-38 on |311|IGLJ2|J-REGION| [len=38] (mis=3)
425-636 ==> 0-211 on |307|IGLC3|C-REGION| [len=317] (mis=0)
umis assigned: [84, 269, 320, 380, 383, 522, 554, 556, 583, 652] and 4 others
of which 14 are surviving nonsolos
reads assigned: 2811
start codons at 36, 190, 241, 365
confident = false
did not find CDR3

TIG 2[bases=466]
1-273 ==> 2164-2436 on rc of segment before IGHD2-2 exon 1 [len=2436] (mis=0)
308-364 ==> 7-63 on |737|IGHJ6|J-REGION| [len=63] (mis=0)
364-466 ==> 0-102 on |6|IGHD|C-REGION| [len=1289] (mis=0)
umis assigned: [1210]
of which 1 are surviving nonsolos
reads assigned: 602
start codons at 28, 34, 75, 321, 382, 443
confident = false
did not find CDR3
now this is a cell
paired!

AGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGCAGAGTATAGCAGCTCGGACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG <==> ATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.75 = TGCCCTATCTTATCTG-1

using 503 reads

====================================================================================

graph has 473 edges initially, 8 edges after simplification

total ucounts = 252
nonsolo ucounts = 69[2^36, 3^14, 4^8, 5^2, 6, 7^2, 8, 10^2, 11, 12, 93]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.83 = TGCGCAGAGACCTAGG-1

using 629 reads

====================================================================================

graph has 150 edges initially, 2 edges after simplification

total ucounts = 6
nonsolo ucounts = 2[3, 622]
surviving nonsolo ucounts = 1[622]
ids = [2]

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.86 = TGCGCAGAGAGCAATT-1

using 280 reads

====================================================================================

graph has 106 edges initially, 2 edges after simplification

total ucounts = 5
nonsolo ucounts = 2[2, 275]
surviving nonsolo ucounts = 1[275]
ids = [3]

====================================================================================

UMI info for barcode TGCGCAGAGAGCAATT-1 contig 1 = GATGCTTTCT...
umi GACTTACCCG = 273 reads: +451 validated

GOOD CONTIGS

TIG 1[bases=561]
17-394 ==> 0-377 on |190|IGHV4-39|L-REGION+V-REGION| [len=377] (mis=3)
420-468 ==> 0-48 on |55|IGHJ4|J-REGION| [len=48] (mis=0)
468-561 ==> 0-93 on |40|IGHG1|C-REGION| [len=884] (mis=1)
junction support: 1 umis using 42 reads
cdr3 = CARHMGRYGDFLYYFDYW at 383, score = 9 + 7
umis assigned: [3]
of which 1 are surviving nonsolos
reads assigned: 266
start codons at 1, 17, 26, 38, 82, 395
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.100 = TGCGCAGAGCTTCGCG-1

using 189 reads

====================================================================================

graph has 94 edges initially, 2 edges after simplification

total ucounts = 7
nonsolo ucounts = 4[2, 3, 5, 176]
surviving nonsolo ucounts = 1[176]
ids = [5]

====================================================================================

UMI info for barcode TGCGCAGAGCTTCGCG-1 contig 1 = GGGAGTCAGT...
umi TATGATCGGC = 177 reads: +391 validated

GOOD CONTIGS

TIG 1[bases=554]
27-380 ==> 0-353 on |253|IGKV1D-39|L-REGION+V-REGION| [len=353] (mis=0)
380-418 ==> 0-38 on |215|IGKJ3|J-REGION| [len=38] (mis=0)
418-554 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 28 reads
cdr3 = CQQSYSTPPFTF at 354, score = 9 + 8
umis assigned: [5]
of which 1 are surviving nonsolos
reads assigned: 174
start codons at 27, 33, 89, 102, 238, 460
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.103 = TGCGCAGAGGCCCTTG-1

using 1318 reads

====================================================================================

graph has 488 edges initially, 4 edges after simplification

total ucounts = 6
nonsolo ucounts = 3[276, 377, 662]
surviving nonsolo ucounts = 3[276, 377, 662]
ids = [0, 4, 5]

====================================================================================

UMI info for barcode TGCGCAGAGGCCCTTG-1 contig 1 = AGTCTCAGTC...
umi AACTTGACCT = 3 reads: -330X +1 -1 +1 -1X +1 -7X +1 -1X +1 -1X +2 -2X +2 -1XX +31 -1XX invalidated
umi CTCAATATTA = 378 reads: +385 validated
umi GAGGTATCTG = 666 reads: +385 validated

GOOD CONTIGS

TIG 1[bases=541]
0-20 ==> 3-23 on |252|IGKV1D-39|5'UTR| [len=23] (mis=0)
20-373 ==> 0-353 on |253|IGKV1D-39|L-REGION+V-REGION| [len=353] (mis=18)
366-405 ==> 0-39 on |214|IGKJ2|J-REGION| [len=39] (mis=5)
405-541 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 2 umis using 180 reads
cdr3 = CQQSYSTPSF at 347, score = 9 + 7
umis assigned: [0, 4, 5]
of which 3 are surviving nonsolos
reads assigned: 1027
start codons at 20, 26, 82, 95, 231, 447
confident = true
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.113 = TGCGCAGAGTAGGCCA-1

using 267 reads

====================================================================================

graph has 140 edges initially, 2 edges after simplification

total ucounts = 4
nonsolo ucounts = 2[9, 256]
surviving nonsolo ucounts = 1[256]
ids = [2]

====================================================================================

UMI info for barcode TGCGCAGAGTAGGCCA-1 contig 1 = GGAATCAGTC...
umi GCACGCCAAG = 225 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=501]
0-26 ==> 1-27 on |222|IGKV1-17|5'UTR| [len=27] (mis=0)
26-377 ==> 0-351 on |223|IGKV1-17|L-REGION+V-REGION| [len=351] (mis=19)
376-414 ==> 0-38 on |213|IGKJ1|J-REGION| [len=38] (mis=1)
414-501 ==> 0-87 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 33 reads
cdr3 = CLQYSSSPWTF at 353, score = 9 + 8
umis assigned: [2]
of which 1 are surviving nonsolos
reads assigned: 220
start codons at 26, 32, 101, 237, 456
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.116 = TGCGCAGAGTGCAAGC-1

using 45 reads

====================================================================================

graph has 48 edges initially, 2 edges after simplification

total ucounts = 11
nonsolo ucounts = 7[2, 3, 4, 5^2, 11^2]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.125 = TGCGCAGCAAGCGAGT-1

using 300 reads

====================================================================================

graph has 128 edges initially, 2 edges after simplification

total ucounts = 6
nonsolo ucounts = 3[4, 19, 274]
surviving nonsolo ucounts = 1[274]
ids = [3]

====================================================================================

UMI info for barcode TGCGCAGCAAGCGAGT-1 contig 1 = ACCCAGAGGG...
umi GTCCTGTCTG = 270 reads: +385 validated
umi TACGAGGCAG = 4 reads: -385 non-validated

GOOD CONTIGS

TIG 1[bases=535]
14-362 ==> 0-348 on |283|IGKV3-20|L-REGION+V-REGION| [len=348] (mis=3)
361-399 ==> 0-38 on |217|IGKJ5|J-REGION| [len=38] (mis=0)
399-535 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=1)
junction support: 1 umis using 49 reads
cdr3 = CQQYGSSQITF at 338, score = 9 + 8
umis assigned: [3, 4]
of which 1 are surviving nonsolos
reads assigned: 273
start codons at 14, 222, 348, 441, 471
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.127 = TGCGCAGCAATGACCT-1

using 216 reads

====================================================================================

graph has 84 edges initially, 10 edges after simplification

total ucounts = 9
nonsolo ucounts = 4[2^2, 14, 193]
surviving nonsolo ucounts = 1[193]
ids = [4]

====================================================================================

UMI info for barcode TGCGCAGCAATGACCT-1 contig 1 = GGGGTCTCAG...
umi GCAGCCAGAA = 6 reads: -22 +2 -1 +1 -1 +11 -2XX +1 -2XX +21 -2XX +11 -2X +4 -129 +1 -3X +1 -1X +1 -1X +1 -1X +14 -2XX +2 -1XX +1 -1XX +2 -1XX +22 -1XX +1 -1XX +1 -1XX +9 -1XX +5 -2X +3 -98 invalidated
umi GCTGCACTAA = 194 reads: +391 validated

GOOD CONTIGS

TIG 1[bases=640]
0-38 ==> 3-41 on |338|IGLV2-14|5'UTR| [len=41] (mis=0)
38-392 ==> 0-354 on |339|IGLV2-14|L-REGION+V-REGION| [len=361] (mis=0)
391-429 ==> 0-38 on |311|IGLJ2|J-REGION| [len=38] (mis=1)
429-640 ==> 0-211 on |306|IGLC2|C-REGION| [len=317] (mis=0)
junction support: 1 umis using 23 reads
cdr3 = CSSYTSSSTLVVF at 362, score = 8 + 8
umis assigned: [3, 4]
of which 1 are surviving nonsolos
reads assigned: 198
start codons at 38, 195, 239, 246
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.128 = TGCGCAGCAATGGACG-1

using 456 reads

====================================================================================

graph has 162 edges initially, 2 edges after simplification

total ucounts = 6
nonsolo ucounts = 1[451]
surviving nonsolo ucounts = 1[451]
ids = [4]

====================================================================================

UMI info for barcode TGCGCAGCAATGGACG-1 contig 1 = GAGTCAGACC...
umi GTGACCCTGC = 446 reads: +382 validated

GOOD CONTIGS

TIG 1[bases=543]
0-25 ==> 22-47 on |218|IGKV1-12|5'UTR| [len=47] (mis=0)
25-376 ==> 0-351 on |219|IGKV1-12|L-REGION+V-REGION| [len=351] (mis=10)
370-407 ==> 0-37 on |216|IGKJ4|J-REGION| [len=37] (mis=2)
407-543 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 75 reads
cdr3 = CQQAKSFSF at 352, score = 9 + 7
umis assigned: [4]
of which 1 are surviving nonsolos
reads assigned: 444
start codons at 25, 31, 87, 100, 236, 449
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.131 = TGCGCAGCACATCCAA-1

using 1001 reads

====================================================================================

graph has 1428 edges initially, 10 edges after simplification

total ucounts = 529
nonsolo ucounts = 185[2^90, 3^36, 4^20, 5^15, 6^5, 7^6, 8^5, 9^3, 10, 11^2, 13, 30]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.140 = TGCGCAGCAGGCGATA-1

using 20 reads

====================================================================================

graph has 33 edges initially, 2 edges after simplification

total ucounts = 9
nonsolo ucounts = 3[3, 4, 7]
surviving nonsolo ucounts = 2[4, 7]
ids = [1, 0]

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.144 = TGCGCAGCATCAGTAC-1

using 612 reads

====================================================================================

graph has 344 edges initially, 10 edges after simplification

total ucounts = 9
nonsolo ucounts = 5[2, 118, 140, 142, 206]
surviving nonsolo ucounts = 4[118, 140, 142, 206]
ids = [4, 7, 0, 1]

====================================================================================

UMI info for barcode TGCGCAGCATCAGTAC-1 contig 1 = GAAGTGCTTT...
umi GATTCGTGTA = 109 reads: +436 validated

UMI info for barcode TGCGCAGCATCAGTAC-1 contig 2 = GATCAGGACT...
umi GTCTTTGCAT = 124 reads: +397 validated

UMI info for barcode TGCGCAGCATCAGTAC-1 contig 3 = GGTAGAGAAG...
umi ACACTGCGCC = 120 reads: +388 validated

UMI info for barcode TGCGCAGCATCAGTAC-1 contig 4 = GAGAGAGGAG...
umi ATCCCCGTAC = 194 reads: +424 validated

GOOD CONTIGS

TIG 1[bases=532]
0-19 ==> 12-31 on |185|IGHV4-34|5'UTR| [len=31] (mis=0)
19-390 ==> 0-371 on |186|IGHV4-34|L-REGION+V-REGION| [len=371] (mis=40)
407-455 ==> 0-48 on |55|IGHJ4|J-REGION| [len=48] (mis=2)
455-532 ==> 0-77 on |43|IGHG2|C-REGION| [len=977] (mis=0)
junction support: 1 umis using 16 reads
cdr3 = CARYFAFVNYYFDKW at 379, score = 9 + 7
umis assigned: [4]
of which 1 are surviving nonsolos
reads assigned: 107
start codons at 19, 40, 84
confident = false

TIG 2[bases=446]
0-30 ==> 0-30 on |264|IGKV2-28|5'UTR| [len=30] (mis=0)
30-390 ==> 0-360 on |265|IGKV2-28|L-REGION+V-REGION| [len=360] (mis=2)
389-427 ==> 0-38 on |217|IGKJ5|J-REGION| [len=38] (mis=3)
427-446 ==> 0-19 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 28 reads
cdr3 = CMQALQTRETF at 366, score = 9 + 8
umis assigned: [7]
of which 1 are surviving nonsolos
reads assigned: 122
start codons at 30, 63, 99, 187, 349, 369
confident = false

TIG 3[bases=535]
0-34 ==> 80-114 on |322|IGLV1-44|5'UTR| [len=114] (mis=0)
34-387 ==> 0-353 on |323|IGLV1-44|L-REGION+V-REGION| [len=353] (mis=15)
384-422 ==> 0-38 on |313|IGLJ3|J-REGION| [len=38] (mis=3)
422-535 ==> 0-113 on |306|IGLC2|C-REGION| [len=317] (mis=0)
junction support: 1 umis using 19 reads
cdr3 = CASWDDSLRGRVF at 355, score = 8 + 8
umis assigned: [0]
of which 1 are surviving nonsolos
reads assigned: 114
start codons at 34, 188, 338, 363, 368
confident = false

TIG 4[bases=574]
0-73 ==> 6-79 on |119|IGHV3-21|5'UTR| [len=79] (mis=0)
73-426 ==> 0-353 on |120|IGHV3-21|L-REGION+V-REGION| [len=353] (mis=18)
450-497 ==> 16-63 on |737|IGHJ6|J-REGION| [len=63] (mis=1)
497-574 ==> 0-77 on |43|IGHG2|C-REGION| [len=977] (mis=0)
junction support: 1 umis using 26 reads
cdr3 = CARDRAATARLGGMDVW at 415, score = 9 + 7
umis assigned: [1]
of which 1 are surviving nonsolos
reads assigned: 191
start codons at 73, 224, 229, 376, 454
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.149 = TGCGCAGCATTTCACT-1

using 18 reads

====================================================================================

graph has 14 edges initially, 2 edges after simplification

total ucounts = 1
nonsolo ucounts = 1[18]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.166 = TGCGCAGTCCGGCACA-1

using 305 reads

====================================================================================

graph has 99 edges initially, 2 edges after simplification

total ucounts = 5
nonsolo ucounts = 2[5, 297]
surviving nonsolo ucounts = 1[297]
ids = [4]

====================================================================================

UMI info for barcode TGCGCAGTCCGGCACA-1 contig 1 = GAGTCAGACC...
umi GCGTACGGGG = 255 reads: +382 validated

GOOD CONTIGS

TIG 1[bases=492]
0-31 ==> 22-53 on |236|IGKV1-8|5'UTR| [len=53] (mis=0)
31-376 ==> 0-345 on |237|IGKV1-8|L-REGION+V-REGION| [len=345] (mis=0)
375-413 ==> 0-38 on |213|IGKJ1|J-REGION| [len=38] (mis=3)
413-492 ==> 0-79 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 53 reads
cdr3 = CQQYYSYPPTF at 352, score = 9 + 8
umis assigned: [4]
of which 1 are surviving nonsolos
reads assigned: 252
start codons at 31, 87, 100, 236, 455
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.167 = TGCGCAGTCCTCATTA-1

using 394 reads

====================================================================================

graph has 124 edges initially, 2 edges after simplification

total ucounts = 4
nonsolo ucounts = 3[2^2, 389]
surviving nonsolo ucounts = 1[389]
ids = [2]

====================================================================================

UMI info for barcode TGCGCAGTCCTCATTA-1 contig 1 = GGAGTCAGAC...
umi CCTTAATCCG = 385 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=550]
0-26 ==> 155-181 on |232|IGKV1-5|5'UTR| [len=181] (mis=0)
26-365 ==> 0-339 on |233|IGKV1-5|L-REGION+V-REGION| [len=351] (mis=12)
376-414 ==> 0-38 on |217|IGKJ5|J-REGION| [len=38] (mis=3)
414-550 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 57 reads
cdr3 = CQQYYRSPITF at 353, score = 8 + 6
umis assigned: [2]
of which 1 are surviving nonsolos
reads assigned: 382
start codons at 26, 32, 88, 101, 237, 258, 333, 456
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.169 = TGCGCAGTCGAGAGCA-1

using 42 reads

====================================================================================

graph has 38 edges initially, 2 edges after simplification

total ucounts = 6
nonsolo ucounts = 4[3, 5, 12, 20]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.203 = TGCGGGTAGCGAAGGG-1

using 237 reads

====================================================================================

graph has 126 edges initially, 2 edges after simplification

total ucounts = 6
nonsolo ucounts = 3[3, 11, 220]
surviving nonsolo ucounts = 1[220]
ids = [4]

====================================================================================

UMI info for barcode TGCGGGTAGCGAAGGG-1 contig 1 = ACAACAGGCA...
umi ACCTAAGGCT = 1 reads: -60 +1 -1X +45 -1X +8 -284 invalidated
umi CGCTTTATGC = 194 reads: +400 validated

GOOD CONTIGS

TIG 1[bases=520]
0-25 ==> 150-175 on |295|IGKV4-1|5'UTR| [len=175] (mis=0)
25-388 ==> 0-363 on |296|IGKV4-1|L-REGION+V-REGION| [len=363] (mis=11)
386-425 ==> 0-39 on |214|IGKJ2|J-REGION| [len=39] (mis=6)
425-520 ==> 0-95 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 32 reads
cdr3 = CQHYYSIPPTF at 364, score = 9 + 8
umis assigned: [0, 4]
of which 1 are surviving nonsolos
reads assigned: 193
start codons at 25, 94, 347, 467
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.211 = TGCGGGTAGGAGTTTA-1

using 9 reads

====================================================================================

graph has 8 edges initially, 2 edges after simplification

total ucounts = 1
nonsolo ucounts = 1[9]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.220 = TGCGGGTAGTGACTCT-1

using 448 reads

====================================================================================

graph has 192 edges initially, 6 edges after simplification

total ucounts = 12
nonsolo ucounts = 5[3^2, 96, 129, 210]
surviving nonsolo ucounts = 3[96, 129, 210]
ids = [2, 6, 0]

====================================================================================

UMI info for barcode TGCGGGTAGTGACTCT-1 contig 1 = AGAGCTCTGG...
umi ACATTCAATA = 193 reads: +385 validated

GOOD CONTIGS

TIG 1[bases=508]
0-44 ==> 8-52 on |282|IGKV3-20|5'UTR| [len=52] (mis=0)
44-376 ==> 0-332 on |283|IGKV3-20|L-REGION+V-REGION| [len=348] (mis=18)
390-429 ==> 0-39 on |214|IGKJ2|J-REGION| [len=39] (mis=3)
429-508 ==> 0-79 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 35 reads
cdr3 = CQQYSDPTRSF at 368, score = 8 + 7
umis assigned: [0]
of which 1 are surviving nonsolos
reads assigned: 191
start codons at 44, 252, 471
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.223 = TGCGGGTAGTTAGCGG-1

using 203 reads

====================================================================================

graph has 100 edges initially, 2 edges after simplification

total ucounts = 2
nonsolo ucounts = 1[202]
surviving nonsolo ucounts = 1[202]
ids = [1]

====================================================================================

REJECT CONTIGS

TIG 1[bases=468]
0-360 ==> 17-377 on |190|IGHV4-39|L-REGION+V-REGION| [len=377] (mis=0)
363-394 ==> 0-31 on |13|IGHD2-15|D-REGION| [len=31] (mis=7)
400-461 ==> 0-61 on |58|IGHJ6|J-REGION| [len=61] (mis=4)
cdr3 = CARHKRDCSGGSCSNVRGSYYYYMDVW at 349, score = 9 + 7
umis assigned: [1]
of which 1 are surviving nonsolos
reads assigned: 173
start codons at 4, 48, 418
confident = false
VJ delta = 21
not full
not full
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.233 = TGCGGGTCAAGGACAC-1

using 248 reads

====================================================================================

graph has 148 edges initially, 2 edges after simplification

total ucounts = 4
nonsolo ucounts = 2[5, 241]
surviving nonsolo ucounts = 1[241]
ids = [2]

====================================================================================

UMI info for barcode TGCGGGTCAAGGACAC-1 contig 1 = GCTGTGCTGT...
umi CTGCACTTGC = 218 reads: +382 validated

GOOD CONTIGS

TIG 1[bases=588]
0-43 ==> 0-43 on |362|IGLV3-25|5'UTR| [len=43] (mis=0)
43-380 ==> 0-337 on |363|IGLV3-25|L-REGION+V-REGION| [len=337] (mis=1)
387-425 ==> 0-38 on |313|IGLJ3|J-REGION| [len=38] (mis=1)
425-588 ==> 0-163 on |306|IGLC2|C-REGION| [len=317] (mis=0)
junction support: 1 umis using 28 reads
cdr3 = CQSADSSGTYGVF at 358, score = 8 + 8
umis assigned: [2]
of which 1 are surviving nonsolos
reads assigned: 213
start codons at 43, 104, 173, 191, 386
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.248 = TGCGGGTCACTTACGA-1

using 238 reads

====================================================================================

graph has 136 edges initially, 2 edges after simplification

total ucounts = 5
nonsolo ucounts = 2[5, 230]
surviving nonsolo ucounts = 1[230]
ids = [1]

====================================================================================

UMI info for barcode TGCGGGTCACTTACGA-1 contig 1 = AAAAACCACA...
umi CAACCTTCAA = 206 reads: +436 validated

GOOD CONTIGS

TIG 1[bases=530]
0-50 ==> 9-59 on |64|IGHV1-18|5'UTR| [len=59] (mis=1)
50-403 ==> 0-353 on |65|IGHV1-18|L-REGION+V-REGION| [len=353] (mis=22)
452-486 ==> 12-46 on |54|IGHJ4|J-REGION| [len=46] (mis=0)
486-530 ==> 0-44 on |1|IGHA1|C-REGION| [len=1058] (mis=0)
junction support: 1 umis using 18 reads
cdr3 = CARDKHFRDPYYHYSGALDHW at 392, score = 7 + 7
umis assigned: [1]
of which 1 are surviving nonsolos
reads assigned: 199
start codons at 50, 248, 253, 270, 314, 347
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.256 = TGCGGGTCATACGCCG-1

using 919 reads

====================================================================================

graph has 979 edges initially, 8 edges after simplification

total ucounts = 340
nonsolo ucounts = 119[2^74, 3^23, 4^7, 5^6, 6^3, 7^2, 8, 10, 149, 224]
surviving nonsolo ucounts = 2[149, 224]
ids = [204, 129]

====================================================================================

UMI info for barcode TGCGGGTCATACGCCG-1 contig 1 = GCTGTGCTGT...
umi CCCATACCTT = 224 reads: +382 validated

GOOD CONTIGS

TIG 1[bases=636]
0-43 ==> 0-43 on |362|IGLV3-25|5'UTR| [len=43] (mis=0)
43-380 ==> 0-337 on |363|IGLV3-25|L-REGION+V-REGION| [len=337] (mis=0)
387-425 ==> 0-38 on |311|IGLJ2|J-REGION| [len=38] (mis=0)
425-636 ==> 0-211 on |306|IGLC2|C-REGION| [len=317] (mis=0)
junction support: 1 umis using 35 reads
cdr3 = CQSADSSGTYVVF at 358, score = 8 + 8
umis assigned: [129]
of which 1 are surviving nonsolos
reads assigned: 223
start codons at 43, 104, 173, 191, 386
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.257 = TGCGGGTCATAGAAAC-1

using 318 reads

====================================================================================

graph has 140 edges initially, 2 edges after simplification

total ucounts = 12
nonsolo ucounts = 5[2, 3^2, 4, 299]
surviving nonsolo ucounts = 1[299]
ids = [1]

====================================================================================

UMI info for barcode TGCGGGTCATAGAAAC-1 contig 1 = GAGTGCTCTC...
umi ACCCAACTCT = 220 reads: +439 validated

GOOD CONTIGS

TIG 1[bases=468]
18-389 ==> 0-371 on |186|IGHV4-34|L-REGION+V-REGION| [len=371] (mis=11)
411-457 ==> 0-46 on |54|IGHJ4|J-REGION| [len=46] (mis=4)
junction support: 1 umis using 25 reads
cdr3 = CARGAARSGTVTLDYW at 378, score = 9 + 7
umis assigned: [1]
of which 1 are surviving nonsolos
reads assigned: 217
start codons at 18, 39, 83, 169, 274
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.266 = TGCGGGTCATGGGAAC-1

using 179 reads

====================================================================================

graph has 94 edges initially, 2 edges after simplification

total ucounts = 5
nonsolo ucounts = 2[2, 174]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.270 = TGCGGGTGTAAGAGGA-1

using 68 reads

====================================================================================

graph has 60 edges initially, 2 edges after simplification

total ucounts = 23
nonsolo ucounts = 14[2^4, 3, 4^3, 5^2, 6^3, 8]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.275 = TGCGGGTGTAGAGGAA-1

using 136 reads

====================================================================================

graph has 40 edges initially, 2 edges after simplification

total ucounts = 2
nonsolo ucounts = 1[135]
surviving nonsolo ucounts = 1[135]
ids = [0]

====================================================================================

UMI info for barcode TGCGGGTGTAGAGGAA-1 contig 1 = GGGGTCTCAG...
umi CGCTGTGCGC = 129 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=558]
0-38 ==> 4-42 on |336|IGLV2-11|5'UTR| [len=42] (mis=0)
38-366 ==> 0-328 on |337|IGLV2-11|L-REGION+V-REGION| [len=358] (mis=16)
388-426 ==> 0-38 on |311|IGLJ2|J-REGION| [len=38] (mis=3)
426-558 ==> 0-132 on |306|IGLC2|C-REGION| [len=317] (mis=0)
junction support: 1 umis using 21 reads
cdr3 = CSSVAGSYSLVF at 362, score = 8 + 9
umis assigned: [0]
of which 1 are surviving nonsolos
reads assigned: 127
start codons at 38, 177, 195, 246, 249, 345
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.278 = TGCGGGTGTCAAACTC-1

using 597 reads

====================================================================================

graph has 232 edges initially, 6 edges after simplification

total ucounts = 4
nonsolo ucounts = 2[286, 309]
surviving nonsolo ucounts = 2[286, 309]
ids = [0, 2]

====================================================================================

REJECT CONTIGS

TIG 1[bases=556]
0-36 ==> 16-52 on |282|IGKV3-20|5'UTR| [len=52] (mis=0)
0-36 ==> 5964-6000 on rc of segment after IGKV3-20 exon 1 [len=6000] (mis=0)
36-384 ==> 0-348 on |283|IGKV3-20|L-REGION+V-REGION| [len=348] (mis=0)
383-420 ==> 0-37 on |216|IGKJ4|J-REGION| [len=37] (mis=5)
420-556 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
umis assigned: [0]
of which 1 are surviving nonsolos
reads assigned: 282
start codons at 36, 244, 370, 462
confident = false
did not find CDR3

TIG 2[bases=571]
3-84 ==> 5529-5610 on segment before IGKV2OR2-1 exon 1 [len=6000] (mis=2)
37-397 ==> 0-360 on |267|IGKV2-30|L-REGION+V-REGION| [len=360] (mis=0)
397-435 ==> 0-38 on |217|IGKJ5|J-REGION| [len=38] (mis=1)
435-571 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
umis assigned: [2]
of which 1 are surviving nonsolos
reads assigned: 304
start codons at 37, 70, 98, 106, 194, 356, 376, 477
confident = false
did not find CDR3
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.280 = TGCGGGTGTCAATGTC-1

using 297 reads

====================================================================================

graph has 130 edges initially, 2 edges after simplification

total ucounts = 3
nonsolo ucounts = 1[295]
surviving nonsolo ucounts = 1[295]
ids = [1]

====================================================================================

UMI info for barcode TGCGGGTGTCAATGTC-1 contig 1 = AGGAGTCAGA...
umi TCCATGAATC = 290 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=551]
0-27 ==> 20-47 on |218|IGKV1-12|5'UTR| [len=47] (mis=0)
27-378 ==> 0-351 on |219|IGKV1-12|L-REGION+V-REGION| [len=351] (mis=25)
376-415 ==> 0-39 on |214|IGKJ2|J-REGION| [len=39] (mis=5)
415-551 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 46 reads
cdr3 = CQQGNSFPYTF at 354, score = 9 + 8
umis assigned: [1]
of which 1 are surviving nonsolos
reads assigned: 287
start codons at 27, 33, 89, 102, 457
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.283 = TGCGGGTGTCATCGGC-1

using 8 reads

====================================================================================

graph has 6 edges initially, 2 edges after simplification

total ucounts = 1
nonsolo ucounts = 1[8]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.287 = TGCGGGTGTCCGTCAG-1

using 495 reads

====================================================================================

graph has 674 edges initially, 4 edges after simplification

total ucounts = 245
nonsolo ucounts = 95[2^42, 3^23, 4^8, 5^10, 6^4, 7, 8^2, 9, 11^2, 15, 17]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.313 = TGCGGGTGTTCCCTTG-1

using 29 reads

====================================================================================

graph has 16 edges initially, 2 edges after simplification

total ucounts = 1
nonsolo ucounts = 1[29]
surviving nonsolo ucounts = 1[29]
ids = [0]

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.314 = TGCGGGTGTTCCGTCT-1

using 92 reads

====================================================================================

graph has 28 edges initially, 2 edges after simplification

total ucounts = 6
nonsolo ucounts = 1[87]
surviving nonsolo ucounts = 1[87]
ids = [3]

====================================================================================

UMI info for barcode TGCGGGTGTTCCGTCT-1 contig 1 = GAATCAGTCC...
umi TCAATAGCAG = 70 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=490]
0-25 ==> 2-27 on |222|IGKV1-17|5'UTR| [len=27] (mis=0)
25-376 ==> 0-351 on |223|IGKV1-17|L-REGION+V-REGION| [len=351] (mis=19)
375-413 ==> 0-38 on |213|IGKJ1|J-REGION| [len=38] (mis=1)
413-490 ==> 0-77 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 10 reads
cdr3 = CLQYSSSPWTF at 352, score = 9 + 8
umis assigned: [3]
of which 1 are surviving nonsolos
reads assigned: 70
start codons at 25, 31, 100, 236, 455
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.316 = TGCGGGTGTTCGTTGA-1

using 186 reads

====================================================================================

graph has 90 edges initially, 2 edges after simplification

total ucounts = 2
nonsolo ucounts = 1[185]
surviving nonsolo ucounts = 1[185]
ids = [0]

====================================================================================

UMI info for barcode TGCGGGTGTTCGTTGA-1 contig 1 = CTCAGGAAGC...
umi AAGTCCAGGA = 178 reads: +376 validated

GOOD CONTIGS

TIG 1[bases=508]
0-31 ==> 21-52 on |348|IGLV3-1|5'UTR| [len=52] (mis=0)
31-377 ==> 0-346 on |349|IGLV3-1|L-REGION+V-REGION| [len=346] (mis=5)
369-407 ==> 0-38 on |309|IGLJ1|J-REGION| [len=38] (mis=3)
407-508 ==> 0-101 on |305|IGLC1|C-REGION| [len=317] (mis=0)
junction support: 1 umis using 24 reads
cdr3 = CQAWDSSTGVF at 346, score = 6 + 8
umis assigned: [0]
of which 1 are surviving nonsolos
reads assigned: 176
start codons at 31, 36, 92, 179, 325, 329
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.318 = TGCGGGTGTTGCGTTA-1

using 527 reads

====================================================================================

graph has 202 edges initially, 4 edges after simplification

total ucounts = 5
nonsolo ucounts = 3[2, 110, 413]
surviving nonsolo ucounts = 2[110, 413]
ids = [0, 2]

====================================================================================

UMI info for barcode TGCGGGTGTTGCGTTA-1 contig 1 = GAAATTCAGG...
umi CCCGCGTATT = 416 reads: +424 validated

GOOD CONTIGS

TIG 1[bases=591]
65-413 ==> 0-348 on |740|IGHV4-30-4|L-REGION+V-REGION| [len=348] (mis=5)
443-489 ==> 0-46 on |54|IGHJ4|J-REGION| [len=46] (mis=4)
489-591 ==> 0-102 on |6|IGHD|C-REGION| [len=1289] (mis=0)
junction support: 1 umis using 33 reads
cdr3 = CARGDQGFGEPTIDYW at 410, score = 9 + 7
umis assigned: [2]
of which 1 are surviving nonsolos
reads assigned: 409
start codons at 21, 65, 109, 507, 568
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.321 = TGCGGGTGTTTAGGAA-1

using 208 reads

====================================================================================

graph has 66 edges initially, 2 edges after simplification

total ucounts = 1
nonsolo ucounts = 1[208]
surviving nonsolo ucounts = 1[208]
ids = [0]

====================================================================================

UMI info for barcode TGCGGGTGTTTAGGAA-1 contig 1 = AGTGCTGGGG...
umi GTTCATTCCA = 197 reads: +385 validated

GOOD CONTIGS

TIG 1[bases=572]
0-44 ==> 118-162 on |342|IGLV2-23|5'UTR| [len=162] (mis=0)
44-384 ==> 0-340 on |343|IGLV2-23|L-REGION+V-REGION| [len=340] (mis=24)
401-429 ==> 10-38 on |311|IGLJ2|J-REGION| [len=38] (mis=2)
429-572 ==> 0-143 on |306|IGLC2|C-REGION| [len=317] (mis=1)
junction support: 1 umis using 32 reads
cdr3 = CFSYGTSGRTF at 368, score = 8 + 8
umis assigned: [0]
of which 1 are surviving nonsolos
reads assigned: 195
start codons at 44, 252, 378
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.324 = TGCGGGTTCAACGGCC-1

using 366 reads

====================================================================================

graph has 158 edges initially, 2 edges after simplification

total ucounts = 11
nonsolo ucounts = 3[3, 9, 346]
surviving nonsolo ucounts = 1[346]
ids = [0]

====================================================================================

UMI info for barcode TGCGGGTTCAACGGCC-1 contig 1 = GGGGAGGAAC...
umi ACTAACACCG = 347 reads: +373 validated

GOOD CONTIGS

TIG 1[bases=545]
0-36 ==> 11-47 on |278|IGKV3-11|5'UTR| [len=47] (mis=0)
36-368 ==> 0-332 on |279|IGKV3-11|L-REGION+V-REGION| [len=345] (mis=0)
370-409 ==> 0-39 on |214|IGKJ2|J-REGION| [len=39] (mis=4)
409-545 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 55 reads
cdr3 = CQQRARTF at 357, score = 9 + 8
umis assigned: [0]
of which 1 are surviving nonsolos
reads assigned: 341
start codons at 36, 241, 244, 451
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.328 = TGCGGGTTCACAACGT-1

using 14806 reads

====================================================================================

graph has 5309 edges initially, 68 edges after simplification

total ucounts = 587
nonsolo ucounts = 262[2^100, 3^55, 4^19, 5^8, 6^6, 7^4, 8^5, 9^6, 10, 11, 12^2, 15, 16, 33, 44, 53, 61, 82^2, 93, 97, 105, 125, 133, 151, 167, 172, 176, 186, 209, 215, 226, 228, 229, 230, 231, 232, 241^2, 244, 245, 260, 270, 272, 275, 284, 288, 289, 290, 295, 300, 305, 309, 311, 312^2, 331, 335, 345, 360, 379, 399, 506, 564, 658, 986]
surviving nonsolo ucounts = 48[82, 93, 97, 105, 125, 133, 151, 167, 172, 176, 186, 209, 215, 226, 228, 229, 230, 231, 232, 241^2, 244, 245, 260, 270, 272, 275, 284, 288, 289, 290, 295, 300, 305, 309, 311, 312^2, 331, 335, 345, 360, 379, 399, 506, 564, 658, 986]
ids = [131, 199, 440, 259, 552, 175, 335, 152, 525, 274, ...]

====================================================================================

UMI info for barcode TGCGGGTTCACAACGT-1 contig 1 = ACATGGGAAG...
umi ACGCCTTAAC = 230 reads: +439 validated
umi ACTGGCAAGA = 248 reads: +439 validated
umi ATTACCAGTA = 84 reads: +397 -42 non-validated
umi CCAGTTATCG = 95 reads: -16 +423 non-validated
umi CTAATATCAT = 173 reads: +439 validated
umi CTCATTTCCA = 290 reads: +439 validated
umi CTCCCGTTGG = 232 reads: +439 validated
umi GAGTGTCACA = 151 reads: +439 validated
umi GCACGTCACC = 185 reads: +439 validated
umi GGACCTTCGT = 285 reads: +439 validated
umi TACCGCCGGG = 100 reads: +234 -1XX +204 invalidated
umi TCTAGTATTC = 242 reads: +439 validated
umi TGCTCTCTCC = 172 reads: +439 validated

UMI info for barcode TGCGGGTTCACAACGT-1 contig 2 = TGGGGGAGTC...
umi AAACCACGAC = 215 reads: +388 validated
umi AAAGTTTGCG = 227 reads: +388 validated
umi AAGTCCCGGG = 405 reads: +388 validated
umi AGGTGCCGCC = 353 reads: +388 validated
umi AGTATAGTCA = 380 reads: +388 validated
umi ATACGAGTGC = 291 reads: +388 validated
umi ATAGGTGTCG = 9 reads: -354X +2 -1XX +6 -2XX +8 -1XX +6 -1XX +5 -1XX +1 invalidated
umi CAAAGCGGGC = 292 reads: +388 validated
umi CACAACCTCA = 166 reads: +388 validated
umi CACTGCGTCT = 236 reads: +388 validated
umi CACTTACGGT = 300 reads: +388 validated
umi CATACGTGCT = 136 reads: +388 validated
umi CCATTACTGT = 243 reads: -21 +367 non-validated
umi CCTTCCTCCC = 275 reads: +388 validated
umi CGACCCGCCA = 209 reads: +388 validated
umi CGCTCTAGGC = 109 reads: +388 validated
umi CTGACAGTTA = 517 reads: +388 validated
umi CTTTTCGCGT = 262 reads: +388 validated
umi GACAATGCCC = 272 reads: +388 validated
umi GCGTGCACCG = 301 reads: +388 validated
umi GGGTTTTCAG = 301 reads: +388 validated
umi GTTCTGTACA = 310 reads: +388 validated
umi TAGCCCAGGC = 359 reads: +388 validated
umi TATCATTCCT = 334 reads: +388 validated
umi TATCTGTGGC = 307 reads: +388 validated
umi TATTTGCCAA = 246 reads: +388 validated
umi TCCCACCGCA = 332 reads: +388 validated
umi TCCTTATTGG = 229 reads: +388 validated
umi TTCCCACTTA = 126 reads: +388 validated
umi TTCGCATCCC = 566 reads: +388 validated
umi TTCTCAGGAC = 232 reads: +388 validated
umi TTTGCCGCCT = 316 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=535]
0-25 ==> 6-31 on |185|IGHV4-34|5'UTR| [len=31] (mis=0)
25-396 ==> 0-371 on |186|IGHV4-34|L-REGION+V-REGION| [len=371] (mis=15)
436-464 ==> 18-46 on |54|IGHJ4|J-REGION| [len=46] (mis=0)
464-535 ==> 0-71 on |60|IGHM|C-REGION| [len=1358] (mis=0)
junction support: 11 umis using 174 reads
cdr3 = CARGAVRSATVVIDSW at 385, score = 9 + 6
umis assigned: [71, 77, 131, 199, 274, 286, 287, 335, 343, 370] and 3 others
of which 13 are surviving nonsolos
reads assigned: 2441
start codons at 2, 25, 46, 90, 176
confident = true

TIG 2[bases=554]
30-383 ==> 0-353 on |253|IGKV1D-39|L-REGION+V-REGION| [len=353] (mis=19)
380-418 ==> 0-38 on |213|IGKJ1|J-REGION| [len=38] (mis=5)
418-554 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 31 umis using 1363 reads
cdr3 = CQKSDSSPRTF at 357, score = 9 + 8
umis assigned: [4, 12, 42, 101, 106, 110, 113, 142, 152, 163] and 22 others
of which 32 are surviving nonsolos
reads assigned: 8699
start codons at 30, 36, 92, 105, 241, 460
confident = true
now this is a cell
paired!

GCGGACACGGCGGTGTATTACTGTGCGAGGGGGGCTGTCCGGTCCGCTACGGTTGTTATTGACTCCTGGAGTCAGGGAACCCTGGTCACCGTCTCCTCAG <==> ATCAGCACTCTACAGCCTGAAGATTTTGCAACTTACTTCTGTCAAAAGAGTGACAGTTCCCCCCGAACGTTCGGCCAAGGGACCAGGGTGGAAATCAAGC

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.334 = TGCGGGTTCAGATAAG-1

using 381 reads

====================================================================================

graph has 136 edges initially, 2 edges after simplification

total ucounts = 11
nonsolo ucounts = 2[2, 370]
surviving nonsolo ucounts = 1[370]
ids = [5]

====================================================================================

UMI info for barcode TGCGGGTTCAGATAAG-1 contig 1 = GAAGAGCTGC...
umi CGCCCCGCCC = 372 reads: +385 validated

GOOD CONTIGS

TIG 1[bases=554]
0-33 ==> 19-52 on |282|IGKV3-20|5'UTR| [len=52] (mis=0)
33-381 ==> 0-348 on |283|IGKV3-20|L-REGION+V-REGION| [len=348] (mis=6)
381-418 ==> 0-37 on |216|IGKJ4|J-REGION| [len=37] (mis=1)
418-554 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 50 reads
cdr3 = CQQHATSPFTF at 357, score = 9 + 8
umis assigned: [5]
of which 1 are surviving nonsolos
reads assigned: 366
start codons at 33, 241, 367, 460
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.337 = TGCGGGTTCAGCCTAA-1

using 29091 reads

====================================================================================

graph has 8523 edges initially, 88 edges after simplification

total ucounts = 1051
nonsolo ucounts = 477[2^173, 3^91, 4^51, 5^24, 6^17, 7^8, 8, 9^3, 10, 12^2, 13^2, 14, 17, 55, 63, 71, 75, 81, 98, 123, 125, 140, 147, 150, 156, 171, 175, 177, 186, 188, 191, 194, 197, 199, 203, 208, 210, 214, 215, 217, 219, 221, 227^2, 231^2, 234, 236, 239, 240, 243, 244, 249, 252^2, 253, 256, 257^2, 258^2, 262, 264, 266^2, 267^2, 269, 271^2, 272, 274, 277, 278, 281, 282, 285^2, 287, 291, 292, 293, 294^2, 295, 296, 298^2, 299, 304, 317, 318, 322^2, 324^2, 325, 327, 330, 332, 339, 341, 348, 351, 362, 366, 367, 385, 388, 401, 455, 517, 545, 546, 846]
surviving nonsolo ucounts = 93[81, 123, 147, 150, 156, 171, 175, 177, 186, 188, 191, 194, 197, 199, 203, 208, 210, 214, 215, 217, 219, 221, 227^2, 231^2, 234, 236, 239, 240, 243, 244, 249, 252, 253, 256, 257^2, 258^2, 262, 264, 266^2, 267^2, 269, 271^2, 272, 274, 277, 278, 281, 282, 285^2, 287, 291, 292, 293, 294^2, 295, 296, 298^2, 299, 304, 317, 318, 322^2, 324^2, 325, 327, 330, 332, 339, 341, 348, 351, 362, 366, 367, 385, 388, 401, 517, 545, 546, 846]
ids = [797, 243, 809, 996, 217, 1012, 610, 441, 366, 523, ...]

====================================================================================

UMI info for barcode TGCGGGTTCAGCCTAA-1 contig 1 = AGGAGTCAGA...
umi AAAAATTGCG = 292 reads: +388 validated
umi AAACCGCGGG = 298 reads: +388 validated
umi AACAATCAGT = 546 reads: +388 validated
umi AACATGTACG = 252 reads: +388 validated
umi AACTTTTACA = 208 reads: +388 validated
umi AAGGATAGCG = 313 reads: +388 validated
umi AATAATCTCT = 232 reads: +388 validated
umi ACAAGCGCTG = 297 reads: +388 validated
umi ACATATCAAT = 200 reads: +388 validated
umi ACCCTGTGTA = 305 reads: +293 -2XX +93 invalidated
umi ACCGGGTCTA = 268 reads: +388 validated
umi ACTAGTTAAC = 233 reads: +388 validated
umi ACTTTTTCCC = 198 reads: +388 validated
umi AGACTTACGT = 353 reads: +388 validated
umi AGATGTCTTC = 349 reads: +388 validated
umi AGCGGCGGCC = 201 reads: +388 validated
umi AGGACACTAC = 520 reads: +388 validated
umi AGGGGACCAA = 289 reads: +388 validated
umi ATAGTTACCA = 223 reads: +388 validated
umi ATATCTCCGT = 157 reads: +388 validated
umi ATTCCACAGG = 303 reads: +388 validated
umi CAATAGCTGG = 215 reads: +388 validated
umi CACCTCTACA = 236 reads: +388 validated
umi CAGATGAAGT = 273 reads: +388 validated
umi CAGTGTGTAT = 259 reads: +388 validated
umi CATAAATCTT = 267 reads: +388 validated
umi CCACTGTGCC = 188 reads: +388 validated
umi CCCAACCTCG = 279 reads: +388 validated
umi CCCCGTTCTC = 279 reads: -354X +2 -1X +6 -2XX +15 -1XX +7 invalidated
umi CCCTGGACGG = 391 reads: +388 validated
umi CCGGTTCAGT = 323 reads: +388 validated
umi CCTACCGTCT = 272 reads: +388 validated
umi CGAGCTCCTC = 179 reads: +388 validated
umi CGCAGGGGCT = 292 reads: +388 validated
umi CGCGCGCCGA = 300 reads: +388 validated
umi CGCTACGTGA = 274 reads: +388 validated
umi CGTGACCTCT = 397 reads: +388 validated
umi CTCCCAATGC = 188 reads: +388 validated
umi CTCCCGTCCC = 307 reads: +388 validated
umi CTCCGTGTCA = 286 reads: +388 validated
umi CTGCGTCTCT = 288 reads: +388 validated
umi CTTCATGTCA = 241 reads: +388 validated
umi CTTCTGGGGG = 211 reads: +388 validated
umi CTTGTTGACT = 541 reads: -251X +137 invalidated
umi CTTGTTTCCT = 218 reads: +388 validated
umi CTTTATTCGT = 293 reads: +388 validated
umi GACTACCCAT = 674 reads: -340 +2 -2XX +2 -6XX +1 -1XX +5 -1XX +3 -3XX +9 -1XX +12 invalidated
umi GACTATCCTC = 241 reads: +388 validated
umi GAGTCTACCG = 169 reads: +388 validated
umi GATTTGTCAC = 333 reads: +388 validated
umi GCACACATTT = 232 reads: +388 validated
umi GCACCACCAT = 371 reads: +388 validated
umi GCACGTACCC = 273 reads: +388 validated
umi GCCACTCCTA = 260 reads: +388 validated
umi GCCCCCTGCA = 266 reads: +388 validated
umi GCGGAGTGTT = 254 reads: +388 validated
umi GGAGCTTTCC = 324 reads: +388 validated
umi GGGATGTTGT = 190 reads: +388 validated
umi GGGGTCCCAT = 257 reads: +388 validated
umi GTAGATGAAG = 267 reads: +388 validated
umi GTATGTCCCT = 366 reads: -346X +1 -7X +2 -1XX +6 -2XX +15 -1XX +7 invalidated
umi GTCACAGGGC = 235 reads: +388 validated
umi GTCCTGGTCA = 327 reads: +388 validated
umi GTGACCGTTA = 257 reads: +388 validated
umi GTGGGTCTCC = 363 reads: +388 validated
umi GTTACCTCTT = 318 reads: +388 validated
umi GTTATTTCAC = 366 reads: +388 validated
umi TACAAGTACG = 301 reads: +388 validated
umi TACATGTGGG = 255 reads: +388 validated
umi TACGTTCCTT = 250 reads: +388 validated
umi TAGCCCGTAT = 148 reads: +388 validated
umi TATTCAAGCC = 339 reads: +388 validated
umi TATTTTCTAT = 256 reads: +388 validated
umi TCAAGCGCGA = 207 reads: +388 validated
umi TCACGTACAC = 287 reads: +388 validated
umi TCAGGTTCTT = 266 reads: +388 validated
umi TCAGTTATGA = 327 reads: +388 validated
umi TCCGGACCAG = 220 reads: +388 validated
umi TCGATACATG = 236 reads: +388 validated
umi TCGTATAGTG = 96 reads: -354X +2 -1XX +6 -2XX +15 -1XX +7 invalidated
umi TCGTTATCGC = 337 reads: +388 validated
umi TCTACCTTTG = 229 reads: +388 validated
umi TCTCCCGTAG = 337 reads: +388 validated
umi TGCCGACGTA = 321 reads: +388 validated
umi TGCTGGACGG = 332 reads: +388 validated
umi TTACTAAATA = 278 reads: +388 validated
umi TTACTACGCA = 215 reads: -346 +1 -7X +2 -1XX +6 -2XX +15 -1XX +7 invalidated
umi TTCGCCGGGA = 148 reads: -346 +1 -7X +2 -1XX +6 -2XX +15 -1XX +7 invalidated
umi TTGAACCTCA = 171 reads: +388 validated

UMI info for barcode TGCGGGTTCAGCCTAA-1 contig 2 = AAAAACCACA...
umi CAATTACTGA = 218 reads: +436 validated

UMI info for barcode TGCGGGTTCAGCCTAA-1 contig 3 = ATACTTTCTG...
umi ACCGCTTGTC = 8 reads: -356X +1 -7X +2 -11XX +2 -2XX +1 -1XX +44 invalidated
umi ATGACGGCGA = 127 reads: +427 validated
umi TACCTGGACC = 73 reads: +373 -1 +4 -1 +1 -1 +29 -17 non-validated
umi TCCGGTGGCT = 288 reads: +427 validated
umi TTTTTGTACT = 23 reads: -427 non-validated

GOOD CONTIGS

TIG 1[bases=551]
0-27 ==> 20-47 on |218|IGKV1-12|5'UTR| [len=47] (mis=0)
27-378 ==> 0-351 on |219|IGKV1-12|L-REGION+V-REGION| [len=351] (mis=0)
378-415 ==> 0-37 on |216|IGKJ4|J-REGION| [len=37] (mis=2)
415-551 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 82 umis using 3359 reads
cdr3 = CQQANSFPQTF at 354, score = 9 + 8
umis assigned: [0, 7, 18, 23, 41, 53, 59, 76, 88, 103] and 79 others
of which 87 are surviving nonsolos
reads assigned: 24411
start codons at 27, 33, 89, 102, 238, 457
confident = true

TIG 2[bases=545]
0-50 ==> 9-59 on |64|IGHV1-18|5'UTR| [len=59] (mis=1)
50-403 ==> 0-353 on |65|IGHV1-18|L-REGION+V-REGION| [len=353] (mis=22)
452-486 ==> 12-46 on |54|IGHJ4|J-REGION| [len=46] (mis=0)
486-545 ==> 0-59 on |1|IGHA1|C-REGION| [len=1058] (mis=0)
junction support: 1 umis using 20 reads
cdr3 = CARDKHFRDPYYHYSGALDHW at 392, score = 7 + 7
umis assigned: [288]
of which 1 are surviving nonsolos
reads assigned: 216
start codons at 50, 248, 253, 270, 314, 347, 540
confident = true

TIG 3[bases=535]
0-37 ==> 108-145 on |193|IGHV4-59|5'UTR| [len=145] (mis=0)
37-387 ==> 0-350 on |194|IGHV4-59|L-REGION+V-REGION| [len=350] (mis=2)
393-417 ==> 0-24 on |13|IGHD2-15|D-REGION| [len=31] (mis=0)
420-464 ==> 19-63 on |737|IGHJ6|J-REGION| [len=63] (mis=0)
464-535 ==> 0-71 on |60|IGHM|C-REGION| [len=1358] (mis=0)
junction support: 2 umis using 29 reads
cdr3 = CARAPIGYCSGGSCDMDVW at 376, score = 9 + 7
umis assigned: [106, 243, 797, 868, 1051]
of which 5 are surviving nonsolos
reads assigned: 510
start codons at 37, 81, 421
confident = true
now this is a cell
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.343 = TGCGGGTTCCAGTATG-1

using 323 reads

====================================================================================

graph has 140 edges initially, 4 edges after simplification

total ucounts = 7
nonsolo ucounts = 5[2^2, 5, 61, 251]
surviving nonsolo ucounts = 2[61, 251]
ids = [3, 5]

====================================================================================

UMI info for barcode TGCGGGTTCCAGTATG-1 contig 1 = GGAGAAGAGC...
umi TTCGACGGCT = 233 reads: +391 validated

GOOD CONTIGS

TIG 1[bases=520]
0-36 ==> 16-52 on |282|IGKV3-20|5'UTR| [len=52] (mis=0)
36-384 ==> 0-348 on |283|IGKV3-20|L-REGION+V-REGION| [len=348] (mis=13)
389-427 ==> 0-38 on |213|IGKJ1|J-REGION| [len=38] (mis=1)
427-520 ==> 0-93 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 47 reads
cdr3 = CQQYGDSPPTWTF at 360, score = 9 + 7
umis assigned: [5]
of which 1 are surviving nonsolos
reads assigned: 227
start codons at 36, 244, 370, 469
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.350 = TGCGGGTTCGACGGAA-1

using 13 reads

====================================================================================

graph has 10 edges initially, 2 edges after simplification

total ucounts = 1
nonsolo ucounts = 1[13]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.352 = TGCGGGTTCGCTAGCG-1

using 5161 reads

====================================================================================

graph has 2462 edges initially, 22 edges after simplification

total ucounts = 376
nonsolo ucounts = 159[2^68, 3^22, 4^20, 5^10, 6^5, 7^6, 8, 9^4, 12, 13, 15, 52, 73, 74, 119, 138, 145, 170, 183, 187, 202, 230, 269, 278, 293, 304, 308, 319, 355, 366, 391]
surviving nonsolo ucounts = 17[52, 119, 145, 170, 183, 187, 202, 230, 269, 278, 293, 304, 308, 319, 355, 366, 391]
ids = [352, 255, 240, 148, 91, 36, 113, 323, 232, 38, ...]

====================================================================================

UMI info for barcode TGCGGGTTCGCTAGCG-1 contig 1 = GATCAGGACT...
umi AAACCTTCAC = 396 reads: +397 validated
umi CCACCCGGGT = 360 reads: +397 validated
umi CGTAACCTCA = 174 reads: +397 validated
umi GAAACCACGT = 354 reads: +397 validated
umi GCTTACCCCC = 268 reads: +397 validated

UMI info for barcode TGCGGGTTCGCTAGCG-1 contig 2 = AGCTCTGGGA...
umi ACGGCATCGA = 192 reads: +418 validated
umi ACTAAGTACA = 275 reads: +418 validated
umi ATCAATCGGC = 312 reads: +418 validated
umi CATAGCTAAG = 188 reads: +418 validated
umi CCCGTAAGGC = 308 reads: +418 validated
umi CCCTAAAGTC = 175 reads: +418 validated
umi GCTGCATTAT = 272 reads: +418 validated
umi GGGCACCTCC = 147 reads: +351 -1 +66 non-validated
umi GTTAACCCTC = 120 reads: +418 validated
umi GTTCCTAGCG = 296 reads: +418 validated
umi TCTTTCCTGT = 232 reads: +418 validated
umi TTAATTTTAG = 47 reads: +311 -1 +13 -6 +87 non-validated

GOOD CONTIGS

TIG 1[bases=563]
0-30 ==> 0-30 on |264|IGKV2-28|5'UTR| [len=30] (mis=0)
30-390 ==> 0-360 on |265|IGKV2-28|L-REGION+V-REGION| [len=360] (mis=2)
388-427 ==> 0-39 on |214|IGKJ2|J-REGION| [len=39] (mis=3)
427-563 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 5 umis using 246 reads
cdr3 = CMQALQTRYTF at 366, score = 9 + 8
umis assigned: [1, 100, 148, 191, 232]
of which 5 are surviving nonsolos
reads assigned: 1524
start codons at 30, 63, 99, 187, 349, 369, 469
confident = true

TIG 2[bases=569]
0-80 ==> 40-120 on |105|IGHV3-11|5'UTR| [len=120] (mis=0)
80-433 ==> 0-353 on |106|IGHV3-11|L-REGION+V-REGION| [len=353] (mis=8)
450-498 ==> 0-48 on |55|IGHJ4|J-REGION| [len=48] (mis=4)
498-569 ==> 0-71 on |60|IGHM|C-REGION| [len=1358] (mis=0)
junction support: 11 umis using 168 reads
cdr3 = CARASKWELHRYDYW at 422, score = 9 + 7
umis assigned: [36, 38, 58, 91, 112, 113, 231, 240, 255, 259] and 2 others
of which 12 are surviving nonsolos
reads assigned: 2514
start codons at 80, 236, 383, 456
confident = true
now this is a cell
paired!

GCCGAGGACACGGCCGTGTATTACTGTGCGAGAGCTTCGAAGTGGGAGCTACACCGATATGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG <==> ATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACTCGGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.367 = TGCGGGTTCTGTACGA-1

using 384 reads

====================================================================================

graph has 202 edges initially, 14 edges after simplification

total ucounts = 11
nonsolo ucounts = 5[3^2, 4, 127, 241]
surviving nonsolo ucounts = 2[127, 241]
ids = [8, 7]

====================================================================================

UMI info for barcode TGCGGGTTCTGTACGA-1 contig 1 = GAGTCTCAGT...
umi TAACTTTGCC = 125 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=545]
21-353 ==> 0-332 on |239|IGKV1-9|L-REGION+V-REGION| [len=351] (mis=24)
371-409 ==> 0-38 on |217|IGKJ5|J-REGION| [len=38] (mis=1)
409-545 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 24 reads
cdr3 = CQHLVTHPISF at 348, score = 9 + 7
umis assigned: [8]
of which 1 are surviving nonsolos
reads assigned: 123
start codons at 21, 27, 232, 235, 451
confident = false

REJECT CONTIGS

TIG 1[bases=545]
0-20 ==> 3-23 on |252|IGKV1D-39|5'UTR| [len=23] (mis=0)
0-20 ==> 789-809 on rc of segment before IGKV2-23 exon 2 [len=809] (mis=0)
0-20 ==> 9990-10010 on rc of segment before IGKV2-40 exon 1 [len=10010] (mis=0)
0-20 ==> 793-813 on segment before IGKV1D-22 exon 1 [len=813] (mis=0)
5-77 ==> 5674-5746 on segment before IGKV1OR2-6 exon 1 [len=5879] (mis=2)
20-373 ==> 0-353 on |253|IGKV1D-39|L-REGION+V-REGION| [len=353] (mis=1)
370-409 ==> 0-39 on |214|IGKJ2|J-REGION| [len=39] (mis=3)
409-545 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
umis assigned: [7]
of which 1 are surviving nonsolos
reads assigned: 235
start codons at 20, 26, 82, 95, 231, 451
confident = false
did not find CDR3
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.373 = TGCGTGGAGAAGGGTA-1

using 8070 reads

====================================================================================

graph has 4514 edges initially, 108 edges after simplification

total ucounts = 971
nonsolo ucounts = 393[2^162, 3^101, 4^40, 5^16, 6^14, 7^9, 8^5, 9^4, 10^3, 11, 12, 14, 15, 23, 29, 33, 49, 70, 89, 91, 132, 143, 149, 157, 166^2, 167, 171, 176, 180^3, 187, 188, 191, 202^3, 204, 208^2, 222, 225, 234, 265, 295, 464, 472]
surviving nonsolo ucounts = 33[23, 49, 70, 89, 91, 132, 143, 149, 157, 166^2, 167, 171, 176, 180^3, 187, 188, 191, 202^3, 204, 208^2, 222, 225, 234, 265, 295, 464, 472]
ids = [671, 412, 966, 395, 657, 562, 348, 620, 364, 0, ...]

====================================================================================

UMI info for barcode TGCGTGGAGAAGGGTA-1 contig 1 = ACTTTCTGAG...
umi CACTATGGGC = 178 reads: +436 validated
umi CCTTAAGTGA = 40 reads: +2 -1 +356 -12 +5 -1 +2 -1 +2 -1 +10 -1 +33 -9 non-validated
umi GATTATACAG = 131 reads: -414 +3 -2X +6 -1X +10 invalidated
umi GTTCTATATT = 192 reads: +436 validated
umi TAAATATCTT = 20 reads: -30 +220 -45 +17 -1 +38 -7 +9 -2 +45 -22 non-validated
umi TAATTATAGT = 203 reads: +436 validated
umi TCTCATATGG = 262 reads: -393X +2 -6XX +8 -2XX +2 -1XX +11 -1XX +10 invalidated
umi TTACAGCTCT = 142 reads: +414 -22 non-validated
umi TTTTCCATCG = 55 reads: +412 -24 non-validated

UMI info for barcode TGCGTGGAGAAGGGTA-1 contig 2 = AGCTTCAGCT...
umi AGTGCTCCTA = 191 reads: +385 validated
umi ATACCTCTGA = 200 reads: +385 validated
umi CACACGCACA = 295 reads: -2 +383 non-validated
umi CATCCTCCTA = 483 reads: +11 -1XX +373 invalidated
umi CCACTTCTCA = 144 reads: +385 validated
umi CCATCCACGG = 182 reads: +385 validated
umi CCCAGCTGAG = 160 reads: +385 validated
umi CGCAATGGTT = 266 reads: +385 validated
umi CGCATCTTGT = 208 reads: +385 validated
umi GAACCCCGTG = 173 reads: +385 validated
umi GATACAGTTG = 211 reads: +385 validated
umi GCAAAGTCTG = 195 reads: +385 validated
umi GGTAATTGGC = 152 reads: +385 validated
umi GTATCTTCGC = 184 reads: +385 validated
umi GTTATTCCTG = 88 reads: +385 validated
umi TCACCACCGT = 165 reads: +385 validated
umi TCCCTAGAGC = 201 reads: +385 validated

GOOD CONTIGS

TIG 1[bases=573]
0-35 ==> 66-101 on |195|IGHV4-61|5'UTR| [len=101] (mis=0)
35-391 ==> 0-356 on |196|IGHV4-61|L-REGION+V-REGION| [len=356] (mis=14)
390-417 ==> 0-27 on |18|IGHD3-10|D-REGION| [len=27] (mis=5)
418-471 ==> 0-53 on |51|IGHJ2|J-REGION| [len=53] (mis=3)
471-573 ==> 0-102 on |6|IGHD|C-REGION| [len=1289] (mis=0)
junction support: 3 umis using 59 reads
cdr3 = CARENTMVRGVILLWYFDLW at 380, score = 9 + 7
umis assigned: [289, 412, 562, 659, 671, 683, 811, 889, 966]
of which 9 are surviving nonsolos
reads assigned: 1208
start codons at 35, 79, 398, 489, 550
confident = true

TIG 2[bases=643]
0-47 ==> 67-114 on |322|IGLV1-44|5'UTR| [len=114] (mis=0)
47-400 ==> 0-353 on |323|IGLV1-44|L-REGION+V-REGION| [len=353] (mis=5)
394-432 ==> 0-38 on |313|IGLJ3|J-REGION| [len=38] (mis=2)
432-643 ==> 0-211 on |306|IGLC2|C-REGION| [len=317] (mis=0)
junction support: 17 umis using 529 reads
cdr3 = CAAWDDSLKGVF at 368, score = 8 + 8
umis assigned: [179, 196, 276, 323, 348, 355, 364, 430, 433, 527] and 7 others
of which 17 are surviving nonsolos
reads assigned: 3429
start codons at 47, 351, 376, 381
confident = true

REJECT CONTIGS

TIG 1[bases=636]
0-38 ==> 124-162 on |342|IGLV2-23|5'UTR| [len=162] (mis=0)
10-65 ==> 5937-5992 on segment before IGLV2-5 exon 1 [len=6137] (mis=2)
19-85 ==> 5809-5875 on segment before IGLV2-34 exon 1 [len=6000] (mis=3)
38-378 ==> 0-340 on |343|IGLV2-23|L-REGION+V-REGION| [len=340] (mis=5)
387-425 ==> 0-38 on |309|IGLJ1|J-REGION| [len=38] (mis=0)
425-636 ==> 0-211 on |305|IGLC1|C-REGION| [len=317] (mis=3)
cdr3 = CCSYAGTNFMSSELGP at 362, score = 8 + 4
umis assigned: [0, 8, 189, 242, 370, 395]
of which 6 are surviving nonsolos
reads assigned: 1033
start codons at 38, 177, 239, 246, 372, 389
confident = false
not full
frameshifted full length transcript of length 636
VJ delta = 19
not full
now this is a cell
paired!

GTATATTACTGTGCGAGAGAGAATACTATGGTTCGGGGAGTTATCCTCCTGTGGTACTTCGATCTCTGGGGCCGTGGCACCCTGGTCACTGTCTCCTCAG <==> AGTGGGCTCCAGTCTGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAAGGGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.381 = TGCGTGGAGCAGACTG-1

using 458 reads

====================================================================================

graph has 214 edges initially, 2 edges after simplification

total ucounts = 12
nonsolo ucounts = 7[2^3, 4, 7, 117, 319]
surviving nonsolo ucounts = 2[117, 319]
ids = [10, 4]

====================================================================================

UMI info for barcode TGCGTGGAGCAGACTG-1 contig 1 = GAATCAGTCC...
umi CAAGTGTTAT = 318 reads: +388 validated
umi TTTCCCCCTG = 120 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=549]
0-25 ==> 2-27 on |222|IGKV1-17|5'UTR| [len=27] (mis=0)
25-376 ==> 0-351 on |223|IGKV1-17|L-REGION+V-REGION| [len=351] (mis=19)
375-413 ==> 0-38 on |213|IGKJ1|J-REGION| [len=38] (mis=1)
413-549 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 2 umis using 68 reads
cdr3 = CLQYSSSPWTF at 352, score = 9 + 8
umis assigned: [4, 10]
of which 2 are surviving nonsolos
reads assigned: 432
start codons at 25, 31, 100, 236, 455
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.385 = TGCGTGGAGCGTTCCG-1

using 85 reads

====================================================================================

graph has 30 edges initially, 2 edges after simplification

total ucounts = 4
nonsolo ucounts = 2[2, 81]
surviving nonsolo ucounts = 1[81]
ids = [0]

====================================================================================

UMI info for barcode TGCGTGGAGCGTTCCG-1 contig 1 = CAGGACACAG...
umi ATAACGTCGC = 74 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=482]
11-362 ==> 0-351 on |246|IGKV1D-16|L-REGION+V-REGION| [len=351] (mis=1)
361-399 ==> 0-38 on |215|IGKJ3|J-REGION| [len=38] (mis=0)
399-482 ==> 0-83 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 19 reads
cdr3 = CQQYNSYPFTF at 338, score = 9 + 8
umis assigned: [0]
of which 1 are surviving nonsolos
reads assigned: 73
start codons at 11, 17, 73, 86, 222, 441
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 100.392 = TGCGTGGAGGCACATG-1

using 301 reads

====================================================================================

graph has 216 edges initially, 2 edges after simplification

total ucounts = 142
nonsolo ucounts = 62[2^25, 3^17, 4^6, 5^7, 6^2, 7, 8^2, 12, 14]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!
sorting bam, mem = 0.07
running samtools sort -l 8G -o /scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk100-ucc6a7a72ce/files/contig_bam_sorted.bam /scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk100-ucc6a7a72ce/files/contig_bam.bam

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

20.095 seconds used processing barcodes, peak mem = 0.23
