[stdout]

starting vdj_asm_asm, mem = 0.01
available mem = 833.51 GB
/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian assembly main /scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk092-ucc6a7a72ce /scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk092-ucc6a7a72ce/files /scratch/etanis/ST-118/multi/dimitri-multi/journal/SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ.fork0.chnk092.ucc6a7a72ce
n50_n50_rpu = 288

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BARCODE 92.0 = TATCTCATCAACGGGA-1

using 1086 reads

====================================================================================

graph has 1452 edges initially, 26 edges after simplification

total ucounts = 455
nonsolo ucounts = 201[2^67, 3^48, 4^25, 5^16, 6^12, 7^10, 8^7, 9^7, 10, 11^3, 12^2, 13^2, 20]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 92.21 = TATCTCATCCGAGCCA-1

using 492 reads

====================================================================================

graph has 186 edges initially, 2 edges after simplification

total ucounts = 3
nonsolo ucounts = 1[490]
surviving nonsolo ucounts = 1[490]
ids = [0]

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 92.24 = TATCTCATCCGCTGTT-1

using 404 reads

====================================================================================

graph has 120 edges initially, 2 edges after simplification

total ucounts = 5
nonsolo ucounts = 3[2, 8, 392]
surviving nonsolo ucounts = 1[392]
ids = [1]

====================================================================================

UMI info for barcode TATCTCATCCGCTGTT-1 contig 1 = GAGTCAGACC...
umi CTTGAAGTCG = 393 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=549]
0-25 ==> 156-181 on |232|IGKV1-5|5'UTR| [len=181] (mis=0)
25-376 ==> 0-351 on |233|IGKV1-5|L-REGION+V-REGION| [len=351] (mis=1)
375-413 ==> 0-38 on |217|IGKJ5|J-REGION| [len=38] (mis=0)
413-549 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 60 reads
cdr3 = CQQYNSYSITF at 352, score = 8 + 8
umis assigned: [1]
of which 1 are surviving nonsolos
reads assigned: 389
start codons at 25, 31, 87, 100, 332, 455
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 92.34 = TATCTCATCGCTTAGA-1

using 138 reads

====================================================================================

graph has 42 edges initially, 2 edges after simplification

total ucounts = 4
nonsolo ucounts = 2[2, 134]
surviving nonsolo ucounts = 1[134]
ids = [1]

====================================================================================

UMI info for barcode TATCTCATCGCTTAGA-1 contig 1 = AGAAGCAGAG...
umi ATCAGATCCG = 126 reads: +379 validated

GOOD CONTIGS

TIG 1[bases=487]
0-28 ==> 12-40 on |356|IGLV3-19|5'UTR| [len=40] (mis=0)
28-365 ==> 0-337 on |357|IGLV3-19|L-REGION+V-REGION| [len=337] (mis=0)
369-407 ==> 0-38 on |311|IGLJ2|J-REGION| [len=38] (mis=0)
407-487 ==> 0-80 on |306|IGLC2|C-REGION| [len=317] (mis=0)
junction support: 1 umis using 23 reads
cdr3 = CNSRDSSGNVVF at 343, score = 8 + 8
umis assigned: [1]
of which 1 are surviving nonsolos
reads assigned: 124
start codons at 28, 147, 176, 227, 326, 368
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 92.42 = TATCTCATCTATGTGG-1

using 39296 reads

====================================================================================

graph has 12246 edges initially, 114 edges after simplification

total ucounts = 1704
nonsolo ucounts = 907[2^279, 3^153, 4^115, 5^76, 6^46, 7^22, 8^21, 9^17, 10^10, 11^10, 12^4, 13^3, 14, 15^2, 16, 17, 18, 19^2, 20, 24, 25, 26, 30^2, 36^2, 38, 40, 41, 43^2, 51, 57, 63, 67, 69, 81, 91, 98, 107, 114, 116, 121^2, 129, 130^2, 139^2, 153, 164, 166^2, 168, 170, 179, 180, 186, 189, 196^2, 205, 207, 210, 211, 212^2, 218, 221, 225, 227, 229^2, 233, 234, 236, 239, 243, 246, 248, 250, 254^2, 255, 256, 258, 259^2, 261, 262, 263, 268, 269^2, 271^2, 272, 274, 275, 279^2, 282, 283, 286^2, 287^2, 289, 291, 295, 299, 302^2, 305, 307^3, 308, 309, 310, 313, 314, 315, 316, 317, 319^2, 320, 321^2, 323, 324, 325, 327^2, 328, 332, 333, 334, 340, 341, 343, 347, 358, 359, 360, 362, 363, 367, 369, 373, 376, 379, 385, 398, 410, 414, 538, 597, 638, 1062]
surviving nonsolo ucounts = 126[41, 63, 67, 69, 91, 98, 107, 114, 116, 121^2, 129, 130, 139^2, 153, 164, 166^2, 168, 170, 179, 180, 186, 189, 196^2, 205, 207, 210, 211, 212^2, 218, 221, 225, 227, 229^2, 233, 234, 236, 239, 243, 246, 248, 250, 254^2, 255, 256, 258, 259^2, 261, 262, 263, 268, 269^2, 271^2, 272, 274, 275, 279^2, 282, 283, 286^2, 287^2, 289, 291, 295, 299, 302^2, 305, 307^3, 308, 309, 310, 313, 314, 315, 316, 317, 319^2, 320, 321^2, 323, 324, 325, 327^2, 328, 332, 333, 334, 340, 341, 343, 347, 358, 359, 360, 362, 363, 367, 369, 373, 376, 379, 385, 398, 410, 414, 538, 638, 1062]
ids = [1448, 1097, 754, 1639, 149, 417, 1292, 1081, 516, 1212, ...]

====================================================================================

UMI info for barcode TATCTCATCTATGTGG-1 contig 1 = ATACTTTCTG...
umi ACTAGTCATC = 140 reads: +373 -1XX +59 invalidated
umi AGATGGCATG = 344 reads: +433 validated
umi ATACTCCTTT = 290 reads: +433 validated
umi ATTGGACGCT = 282 reads: +433 validated
umi CATTTAACTC = 96 reads: -253 +180 non-validated
umi CCCGTTCGTT = 313 reads: +433 validated
umi CTTTTGTGCA = 67 reads: +393 -40 non-validated
umi GCCTCAAGCA = 376 reads: +433 validated
umi GGTCTAATCT = 258 reads: +433 validated
umi GTATGAGAGT = 230 reads: +433 validated
umi GTTATACCGA = 114 reads: +426 -7 non-validated
umi TAGCGGTGTG = 113 reads: -389X +2 -1X +1 -5X +8 -1XX +9 -1XX +16 invalidated
umi TATGAATCAC = 236 reads: +433 validated
umi TATTCCTCGA = 254 reads: +433 validated
umi TCATTGTTGT = 120 reads: +411 -1 +20 -1X invalidated
umi TCTTTGTTGG = 327 reads: +433 validated
umi TGCCTCTGCT = 37 reads: +268 -10 +80 -15 +4 -1 +2 -1 +52 non-validated
umi TGTCAGTAGG = 168 reads: +424 -9 non-validated
umi TTAACCTTTC = 382 reads: +433 validated
umi TTATACTCCT = 301 reads: +433 validated
umi TTGGCTTCTA = 66 reads: +431 -2 non-validated
umi TTTATCACCT = 296 reads: +433 validated

UMI info for barcode TATCTCATCTATGTGG-1 contig 2 = GAGCTACAAC...
umi AACTGTATCT = 61 reads: +68 -1XX +5 -1XX +3 -1XX +1 -1XX +2 -1XX +13 -1XX +14 -1XX +26 -1XX +2 -1XX +1 -1XX +6 -1XX +2 -1XX +6 -8XX +1 -1XX +2 -1XX +1 -1XX +2 -10XX +5 -1XX +21 -1XX +1 -1XX +5 -1XX +6 -1XX +9 -1XX +1 -1XX +6 -151 invalidated
umi AAGACCTTGC = 48 reads: +68 -1XX +5 -1XX +3 -1XX +1 -1XX +2 -1XX +13 -1XX +14 -1XX +26 -1XX +2 -1XX +1 -1XX +6 -1XX +2 -1XX +5 -9X +1 -1XX +2 -1XX +1 -1XX +2 -10XX +5 -1XX +21 -1XX +1 -1XX +5 -1XX +6 -1XX +9 -1XX +1 -1XX +6 -151X invalidated
umi AATGTTCATT = 130 reads: +400 validated
umi ACAATCCTGC = 290 reads: +400 validated
umi ACAATCTCCC = 359 reads: +400 validated
umi ACCGAGGAAC = 320 reads: +400 validated
umi ACGGCGAGCG = 265 reads: +400 validated
umi AGAAAGCTGT = 275 reads: +400 validated
umi AGAAATGCGT = 211 reads: +400 validated
umi AGCGCTCGGC = 374 reads: +400 validated
umi AGCGTGGCTT = 39 reads: +68 -1XX +5 -1XX +3 -1XX +1 -1XX +2 -1XX +13 -1XX +14 -1XX +26 -1XX +2 -1XX +1 -1XX +6 -1XX +2 -1XX +6 -1XX +1 -6XX +1 -1XX +2 -1XX +1 -1XX +2 -10XX +5 -1XX +21 -1XX +1 -1XX +5 -1XX +6 -1XX +9 -1XX +1 -1XX +6 -151 invalidated
umi ATATTCGAAT = 194 reads: +400 validated
umi ATATTGCGGG = 295 reads: +400 validated
umi ATCTGTGTGC = 64 reads: +68 -1XX +5 -1XX +3 -1XX +1 -1XX +2 -1XX +13 -1XX +14 -1XX +26 -1XX +2 -1XX +1 -1XX +6 -1XX +2 -1XX +6 -1XX +1 -1XX +3 -2XX +1 -1XX +2 -1XX +1 -1XX +2 -10XX +5 -1XX +21 -1XX +1 -1XX +5 -1XX +6 -1XX +9 -1XX +1 -1XX +6 -151X invalidated
umi ATTATGTCAT = 269 reads: +400 validated
umi ATTGCCATCC = 334 reads: +400 validated
umi ATTTTAATAT = 319 reads: +400 validated
umi CAAACGTACC = 322 reads: +400 validated
umi CAACCCTGCA = 259 reads: +400 validated
umi CAAGACAGCC = 307 reads: +400 validated
umi CACAGTTCTA = 165 reads: +400 validated
umi CACCGCCATG = 371 reads: +400 validated
umi CACCTCTTAG = 120 reads: +68 -1XX +5 -1XX +3 -1XX +1 -1XX +2 -1XX +13 -1XX +14 -1XX +26 -1XX +2 -1XX +1 -1XX +6 -1XX +2 -1XX +6 -1XX +1 -1XX +3 -2X +1 -1XX +2 -1XX +1 -1XX +2 -10XX +5 -1XX +21 -1XX +1 -1XX +5 -1XX +6 -1XX +9 -1XX +1 -1XX +6 -116XX +1 -17X +1 -4XX +1 -4XX +2 -2XX +1 -2XX invalidated
umi CAGAAATTCT = 278 reads: +400 validated
umi CAGTGCCTCC = 315 reads: +400 validated
umi CATCTAGACC = 107 reads: +68 -1XX +5 -1XX +3 -1XX +1 -1XX +2 -1XX +13 -1XX +14 -1XX +26 -1XX +2 -1XX +1 -1XX +6 -1XX +2 -1XX +6 -1X +1 -1XX +1 -4X +1 -1XX +2 -1XX +1 -1XX +2 -10XX +5 -1XX +21 -1XX +1 -1XX +5 -1XX +6 -1XX +9 -1XX +1 -1XX +6 -134X +1 -4X +1 -4XX +2 -2XX +1 -2XX invalidated
umi CCACGGATCT = 227 reads: +400 validated
umi CCATGTCTCT = 196 reads: +400 validated
umi CCCATTTTAC = 111 reads: +68 -1XX +5 -1XX +3 -1XX +1 -1XX +2 -1XX +13 -1XX +14 -1XX +26 -1XX +2 -1XX +1 -1XX +6 -1XX +2 -1XX +6 -1XX +1 -6XX +1 -1XX +2 -1XX +1 -1XX +2 -10XX +5 -1XX +21 -1XX +1 -1XX +5 -1XX +6 -1XX +9 -1XX +1 -1XX +6 -134XX +1 -4XX +1 -4XX +2 -2XX +1 -2XX invalidated
umi CCCGAGTGCA = 346 reads: +400 validated
umi CCCGTACTGA = 311 reads: +400 validated
umi CCGTCTGGGA = 206 reads: +400 validated
umi CCTAGGTTTT = 246 reads: +400 validated
umi CCTATATGCC = 307 reads: +400 validated
umi CCTGGGGATA = 107 reads: +1 -1 +6 -1 +391 non-validated
umi CCTTCACCTT = 363 reads: +400 validated
umi CGGTCATGTT = 313 reads: +400 validated
umi CGTATATCCT = 242 reads: +400 validated
umi CGTCTGGCCT = 332 reads: +400 validated
umi CGTGTATTCG = 287 reads: +400 validated
umi CTAGAAGGGT = 317 reads: +400 validated
umi CTCGCAATCC = 359 reads: +400 validated
umi CTCTATCCTG = 91 reads: +68 -1XX +5 -1XX +3 -1XX +1 -1XX +2 -1XX +13 -1XX +14 -1XX +26 -1XX +2 -1XX +1 -1XX +6 -1XX +2 -1XX +6 -1XX +1 -3XX +1 -2X +1 -1XX +2 -1XX +1 -1XX +2 -10XX +5 -1XX +21 -1XX +1 -1XX +5 -1XX +6 -1XX +9 -1XX +1 -1XX +6 -134X +1 -4XX +1 -4XX +2 -2XX +1 -2XX invalidated
umi CTGCATGCTA = 281 reads: +400 validated
umi CTTGCACCGT = 319 reads: +400 validated
umi CTTTCACTAA = 364 reads: +400 validated
umi GAACAGGCAG = 115 reads: +68 -1XX +5 -1XX +3 -1XX +1 -1XX +2 -1XX +13 -1XX +14 -1XX +26 -1XX +2 -1XX +1 -1XX +6 -1XX +2 -1XX +6 -1XX +1 -1XX +2 -3XX +1 -1XX +2 -1XX +1 -1XX +2 -10XX +5 -1XX +21 -1XX +1 -1XX +5 -1XX +6 -1XX +9 -1XX +1 -1XX +6 -151XX invalidated
umi GAAGCCCTTC = 414 reads: +400 validated
umi GACCATGGGG = 289 reads: +400 validated
umi GATGTGTATC = 317 reads: +400 validated
umi GATTCTGGGT = 211 reads: +343 -1X +56 invalidated
umi GCAAGAACTC = 77 reads: +68 -1XX +5 -1XX +3 -1XX +1 -1XX +2 -1XX +13 -1XX +14 -1XX +26 -1XX +2 -1XX +1 -1XX +6 -1XX +2 -1XX +6 -1XX +1 -1XX +6 -1XX +2 -1XX +1 -1XX +2 -10XX +5 -1XX +21 -1XX +1 -1XX +5 -1XX +6 -1XX +9 -1XX +1 -1XX +6 -151X invalidated
umi GCAGTCGTGA = 179 reads: +400 validated
umi GCAGTTAACC = 164 reads: +400 validated
umi GCATTTAGGG = 365 reads: +400 validated
umi GCCCCCCTGT = 300 reads: +400 validated
umi GCCCTCACTC = 326 reads: +400 validated
umi GCGACGTCCT = 270 reads: +400 validated
umi GCGGCTCCGC = 237 reads: +400 validated
umi GCGTCGTCTT = 270 reads: -167X +233 invalidated
umi GGATGCGGGC = 260 reads: +400 validated
umi GGCCATGGCT = 152 reads: +400 validated
umi GGGACATTTA = 230 reads: +400 validated
umi GGTAACAGGC = 222 reads: +400 validated
umi GTAATTCTCC = 258 reads: +400 validated
umi GTCATGCCAT = 257 reads: +400 validated
umi GTCCAGGGTA = 317 reads: +400 validated
umi GTCGGCATAA = 85 reads: +68 -1XX +5 -1XX +3 -1XX +1 -1XX +2 -1XX +13 -1XX +14 -1XX +26 -1XX +2 -1XX +1 -1XX +6 -1XX +2 -1XX +6 -1XX +1 -1XX +4 -1X +1 -1XX +2 -1XX +1 -1XX +2 -10XX +5 -1XX +21 -1XX +1 -1XX +5 -1XX +6 -1XX +9 -1XX +1 -1XX +6 -151 invalidated
umi GTTACCCCCA = 326 reads: +400 validated
umi GTTGCTCGAC = 29 reads: +68 -1XX +5 -1XX +3 -1XX +1 -1XX +2 -1XX +13 -1XX +5 -1XX +8 -1XX +26 -1XX +2 -1XX +1 -1XX +6 -1XX +2 -1XX +6 -8X +1 -1XX +2 -1XX +1 -1XX +2 -10XX +5 -1XX +21 -1XX +1 -1XX +5 -1XX +6 -1XX +9 -1XX +1 -1XX +5 -152 invalidated
umi TAATCCGATA = 335 reads: +400 validated
umi TACACCATCC = 309 reads: +400 validated
umi TACAGCGTTT = 256 reads: +400 validated
umi TACCTCTCTA = 329 reads: +400 validated
umi TACTCACCAT = 403 reads: +400 validated
umi TAGGTAACAT = 287 reads: +400 validated
umi TATGCATCAT = 265 reads: +400 validated
umi TATGTAAGCG = 218 reads: +400 validated
umi TCAGATCATA = 80 reads: +68 -1XX +5 -1XX +3 -1XX +1 -1XX +2 -1XX +13 -1XX +14 -1XX +26 -1XX +2 -1XX +1 -1XX +6 -1XX +2 -1XX +6 -1XX +1 -1XX +6 -1X +2 -1XX +1 -1XX +2 -10XX +5 -1XX +21 -1XX +1 -1XX +5 -1XX +6 -1XX +9 -1XX +1 -1XX +6 -151XX invalidated
umi TCATTAGCGC = 379 reads: +400 validated
umi TCGCCAATAC = 121 reads: +68 -1XX +5 -1XX +3 -1XX +1 -1XX +2 -1XX +13 -1XX +14 -1XX +26 -1XX +2 -1XX +1 -1XX +6 -1XX +2 -1XX +6 -8XX +1 -1XX +2 -1XX +1 -1XX +2 -10XX +5 -1XX +21 -1XX +1 -1XX +5 -1XX +6 -1XX +9 -1XX +1 -1XX +6 -134XX +1 -4X +1 -4XX +2 -2XX +1 -2XX invalidated
umi TCTCCTAGAA = 270 reads: +400 validated
umi TGAATCCGTA = 304 reads: +400 validated
umi TGACTACTTT = 416 reads: +400 validated
umi TGCAGAAAGG = 329 reads: +400 validated
umi TGCATATAGC = 342 reads: +400 validated
umi TGCTTGTGGT = 323 reads: +400 validated
umi TGGCCCAGTA = 190 reads: +400 validated
umi TGTTATTCGT = 634 reads: -279 +121 non-validated
umi TGTTTGGTCC = 231 reads: +400 validated
umi TTAGCTGCCC = 240 reads: +400 validated
umi TTATATGCGA = 301 reads: +400 validated
umi TTCCGGCGGT = 254 reads: +400 validated
umi TTTCTCTCCG = 343 reads: +400 validated
umi TTTTAAGGCG = 82 reads: +68 -1XX +5 -1XX +3 -1XX +1 -1XX +2 -1XX +13 -1XX +14 -1XX +26 -1XX +2 -1XX +1 -1XX +6 -1XX +2 -1XX +6 -1XX +1 -6XX +1 -1XX +2 -1XX +1 -1XX +2 -10XX +5 -1XX +21 -1XX +1 -1XX +5 -1XX +6 -1XX +9 -1XX +1 -1XX +6 -116X +1 -17X +1 -4XX +1 -4XX +2 -2XX +1 -2XX invalidated
umi TTTTCCCGCT = 253 reads: +400 validated
umi TTTTTCGCCG = 262 reads: +400 validated
umi TTTTTTATCG = 303 reads: +400 validated

GOOD CONTIGS

TIG 1[bases=541]
0-37 ==> 27-64 on |191|IGHV4-4|5'UTR| [len=64] (mis=2)
37-390 ==> 0-353 on |192|IGHV4-4|L-REGION+V-REGION| [len=353] (mis=22)
435-470 ==> 11-46 on |54|IGHJ4|J-REGION| [len=46] (mis=2)
470-541 ==> 0-71 on |60|IGHM|C-REGION| [len=1358] (mis=0)
junction support: 14 umis using 300 reads
cdr3 = CAKDIPGPQALCGADCYTIW at 379, score = 9 + 8
umis assigned: [109, 138, 194, 296, 417, 458, 754, 856, 978, 1023] and 12 others
of which 22 are surviving nonsolos
reads assigned: 4744
start codons at 16, 37, 81
confident = true

TIG 2[bases=566]
0-30 ==> 145-175 on |295|IGKV4-1|5'UTR| [len=175] (mis=0)
30-393 ==> 0-363 on |296|IGKV4-1|L-REGION+V-REGION| [len=363] (mis=17)
393-430 ==> 0-37 on |216|IGKJ4|J-REGION| [len=37] (mis=2)
430-566 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 83 umis using 3240 reads
cdr3 = CQQYYSTPLTF at 369, score = 10 + 9
umis assigned: [27, 32, 46, 53, 54, 76, 97, 130, 131, 148] and 88 others
of which 98 are surviving nonsolos
reads assigned: 24826
start codons at 30, 99, 352, 472
confident = true
now this is a cell
paired!

ACTTATTACTGTGCGAAAGATATACCGGGGCCTCAAGCACTTTGTGGTGCTGACTGCTATACAATCTGGGGCCGGGGAACCCTAGTCACCGTCTCCTCAG <==> ATCAGCAGCCTGCAGGCTGAAGATGCGGCAGTTTATTACTGTCAACAGTATTATAGCACTCCGCTCACCTTCGGCGGAGGGACCAAGGTGGAGATCATAC

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 92.48 = TATCTCATCTGCAAGT-1

using 295 reads

====================================================================================

graph has 66 edges initially, 2 edges after simplification

total ucounts = 3
nonsolo ucounts = 1[293]
surviving nonsolo ucounts = 1[293]
ids = [1]

====================================================================================

UMI info for barcode TATCTCATCTGCAAGT-1 contig 1 = GAGTCAGACT...
umi CCTCTTTGCA = 295 reads: +385 validated

GOOD CONTIGS

TIG 1[bases=546]
0-25 ==> 156-181 on |232|IGKV1-5|5'UTR| [len=181] (mis=1)
25-376 ==> 0-351 on |233|IGKV1-5|L-REGION+V-REGION| [len=351] (mis=25)
373-410 ==> 0-37 on |216|IGKJ4|J-REGION| [len=37] (mis=5)
410-546 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 48 reads
cdr3 = CHQYNSYSTF at 352, score = 8 + 7
umis assigned: [1]
of which 1 are surviving nonsolos
reads assigned: 291
start codons at 25, 31, 87, 100, 236, 239, 332, 452
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 92.58 = TATCTCATCTTTAGGG-1

using 42 reads

====================================================================================

graph has 18 edges initially, 2 edges after simplification

total ucounts = 5
nonsolo ucounts = 1[38]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 92.61 = TATGCCCAGACAATAC-1

using 18 reads

====================================================================================

graph has 22 edges initially, 2 edges after simplification

total ucounts = 1
nonsolo ucounts = 1[18]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 92.69 = TATGCCCAGATAGCAT-1

using 12529 reads

====================================================================================

graph has 6556 edges initially, 82 edges after simplification

total ucounts = 1029
nonsolo ucounts = 499[2^183, 3^91, 4^65, 5^48, 6^26, 7^16, 8^7, 9^8, 10^4, 11^6, 12^2, 13^2, 16^3, 18, 19, 21, 76, 94, 102, 111, 146, 162, 173, 188, 211, 213^2, 231, 234, 235^2, 241, 263, 266, 286, 289, 291, 292, 306, 308, 309, 310, 316, 345, 348, 365, 409, 410, 487, 509, 1227]
surviving nonsolo ucounts = 32[76, 94, 102, 111, 162, 173, 188, 211, 213, 231, 234, 235^2, 241, 263, 286, 289, 291, 292, 306, 308, 309, 310, 316, 345, 348, 365, 409, 410, 487, 509, 1227]
ids = [71, 716, 727, 362, 454, 597, 687, 45, 289, 642, ...]

====================================================================================

UMI info for barcode TATGCCCAGATAGCAT-1 contig 1 = GGGAGCATCA...
umi AATGAAGGTC = 77 reads: +372 -8XX +3 -1X +1 -2X +2 -1X +1 -1 +20 invalidated
umi AGTTCGTGTA = 309 reads: +412 validated
umi ATGTTAGTCA = 237 reads: +412 validated
umi CACCGCCCTA = 290 reads: -269 +143 non-validated
umi CCATTAATAT = 111 reads: +412 validated
umi GCCCAACAAC = 128 reads: +412 validated
umi GGATTGGCCG = 294 reads: +412 validated
umi GTCGGGAGGG = 17 reads: -289X +2 -3X +2 -2X +2 -1X +1 -3X +2 -1XX +3 -1XX +4 -1XX +1 -1XX +1 -1XX +2 -1XX +23 -1XX +2 -5XX +1 -4XX +1 -1XX +1 -9XX +1 -1XX +38 invalidated
umi GTCTTCGCCA = 234 reads: +195 -1XX +216 invalidated
umi GTTCGCCATA = 77 reads: +412 validated
umi TCCGTAGGAT = 197 reads: +412 validated
umi TGGCACATTG = 410 reads: +412 validated

UMI info for barcode TATGCCCAGATAGCAT-1 contig 2 = TCTGAGGATA...
umi AAACTACCTC = 238 reads: +391 validated
umi AAGACTCATT = 215 reads: +391 validated
umi CAATTCCATA = 216 reads: +391 validated
umi CAGTGTAGCT = 495 reads: -356 +3 -1XX +31 invalidated
umi CATTAAGCCA = 270 reads: +391 validated
umi CCAGTGCAAC = 221 reads: -353X +2 -2X +2 -1XX +5 -4XX +9 -1XX +1 -1XX +10 invalidated
umi CTGAGACATC = 338 reads: +391 validated
umi GGAAATGCGG = 1237 reads: +190 -1XX +4 -6XX +1 -3XX +1 -2XX +1 -2XX +1 -2XX +1 -176XX invalidated
umi GGATTTGGTG = 231 reads: +391 validated
umi GTCAAAAATA = 128 reads: +37 -1 +3 -1 +349 non-validated
umi TAAGACACGG = 100 reads: +391 validated
umi TATCACGACA = 233 reads: +391 validated
umi TGATTGAGTT = 506 reads: -369 +22 non-validated
umi TGGATTTCCT = 292 reads: +391 validated
umi TGGGAACTTA = 299 reads: +391 validated
umi TTCTCGGTAC = 306 reads: +391 validated

GOOD CONTIGS

TIG 1[bases=578]
0-64 ==> 0-64 on |66|IGHV1-2|5'UTR| [len=64] (mis=1)
64-417 ==> 0-353 on |67|IGHV1-2|L-REGION+V-REGION| [len=353] (mis=3)
428-476 ==> 0-48 on |55|IGHJ4|J-REGION| [len=48] (mis=2)
476-578 ==> 0-102 on |6|IGHD|C-REGION| [len=1289] (mis=0)
junction support: 11 umis using 219 reads
cdr3 = CARIVGATYFDYW at 406, score = 8 + 7
umis assigned: [71, 217, 241, 300, 362, 597, 640, 691, 692, 716] and 2 others
of which 11 are surviving nonsolos
reads assigned: 2331
start codons at 64, 220, 262, 267, 299, 328, 361, 494, 555
confident = true

TIG 2[bases=688]
0-86 ==> 0-86 on |732|IGLV6-57|5'UTR| [len=86] (mis=0)
86-439 ==> 0-353 on |384|IGLV6-57|L-REGION+V-REGION| [len=353] (mis=3)
439-477 ==> 0-38 on |313|IGLJ3|J-REGION| [len=38] (mis=0)
477-688 ==> 0-211 on |306|IGLC2|C-REGION| [len=317] (mis=0)
junction support: 12 umis using 470 reads
cdr3 = CQSYDSSNLWVF at 413, score = 6 + 8
umis assigned: [9, 45, 289, 320, 341, 356, 507, 628, 642, 687] and 6 others
of which 15 are surviving nonsolos
reads assigned: 5205
start codons at 86, 149, 240, 291, 423
confident = true

REJECT CONTIGS

TIG 1[bases=561]
4-80 ==> 3258-3334 on rc of segment before IGKV2-24 exon 2 [len=3774] (mis=7)
4-80 ==> 3255-3331 on segment before IGKV2D-23 exon 1 [len=3772] (mis=7)
30-390 ==> 0-360 on |269|IGKV2D-24|L-REGION+V-REGION| [len=360] (mis=0)
387-425 ==> 0-38 on |215|IGKJ3|J-REGION| [len=38] (mis=4)
425-561 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
umis assigned: [228, 282, 296, 435, 454, 923]
of which 6 are surviving nonsolos
reads assigned: 1854
start codons at 30, 63, 99, 187, 349, 467
confident = false
did not find CDR3
now this is a cell
paired!

CTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGGATAGTGGGAGCTACCTATTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG <==> TCTGGACTGAAGACTGAGGACGAGGCTGACTACTACTGTCAGTCTTATGATAGCAGCAATCTTTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 92.84 = TATGCCCAGGACATTA-1

using 1362 reads

====================================================================================

graph has 1479 edges initially, 28 edges after simplification

total ucounts = 546
nonsolo ucounts = 209[2^91, 3^49, 4^35, 5^12, 6^5, 7^8, 8^5, 12, 15^2, 328]
surviving nonsolo ucounts = 1[328]
ids = [115]

====================================================================================

UMI info for barcode TATGCCCAGGACATTA-1 contig 1 = AGTCAGACTC...
umi ATTATTACCT = 333 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=548]
0-24 ==> 157-181 on |232|IGKV1-5|5'UTR| [len=181] (mis=1)
24-375 ==> 0-351 on |233|IGKV1-5|L-REGION+V-REGION| [len=351] (mis=10)
374-412 ==> 0-38 on |213|IGKJ1|J-REGION| [len=38] (mis=2)
412-548 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 53 reads
cdr3 = CQQYDSFSWTF at 351, score = 8 + 8
umis assigned: [115]
of which 1 are surviving nonsolos
reads assigned: 323
start codons at 24, 30, 86, 99, 235, 238, 331, 361, 454
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 92.86 = TATGCCCAGGAGTTTA-1

using 329 reads

====================================================================================

graph has 136 edges initially, 2 edges after simplification

total ucounts = 17
nonsolo ucounts = 13[2^5, 3, 4^2, 7, 10, 13, 17, 257]
surviving nonsolo ucounts = 1[257]
ids = [14]

====================================================================================

UMI info for barcode TATGCCCAGGAGTTTA-1 contig 1 = AGTCTGGGCC...
umi TCATTAGCCC = 245 reads: +382 validated

GOOD CONTIGS

TIG 1[bases=572]
0-40 ==> 211-251 on |358|IGLV3-21|5'UTR| [len=251] (mis=0)
40-391 ==> 0-351 on |359|IGLV3-21|L-REGION+V-REGION| [len=351] (mis=12)
384-422 ==> 0-38 on |313|IGLJ3|J-REGION| [len=38] (mis=0)
422-572 ==> 0-150 on |307|IGLC3|C-REGION| [len=317] (mis=0)
junction support: 1 umis using 48 reads
cdr3 = CQVWDSSSDHWVF at 355, score = 8 + 8
umis assigned: [14]
of which 1 are surviving nonsolos
reads assigned: 243
start codons at 40, 101, 239, 242, 338
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 92.93 = TATGCCCAGGCTCATT-1

using 381 reads

====================================================================================

graph has 144 edges initially, 2 edges after simplification

total ucounts = 2
nonsolo ucounts = 1[380]
surviving nonsolo ucounts = 1[380]
ids = [1]

====================================================================================

UMI info for barcode TATGCCCAGGCTCATT-1 contig 1 = ATCAGTCCCA...
umi GCGTAACCAC = 386 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=547]
0-23 ==> 4-27 on |222|IGKV1-17|5'UTR| [len=27] (mis=0)
23-374 ==> 0-351 on |223|IGKV1-17|L-REGION+V-REGION| [len=351] (mis=6)
373-411 ==> 0-38 on |215|IGKJ3|J-REGION| [len=38] (mis=0)
411-547 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 72 reads
cdr3 = CLQHKSYPFTF at 350, score = 9 + 8
umis assigned: [1]
of which 1 are surviving nonsolos
reads assigned: 378
start codons at 23, 29, 98, 234, 453
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 92.101 = TATGCCCAGTAGGTGC-1

using 79 reads

====================================================================================

graph has 86 edges initially, 2 edges after simplification

total ucounts = 25
nonsolo ucounts = 16[2^5, 3, 4, 5^5, 6, 7^2, 8]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 92.104 = TATGCCCAGTGCCAGA-1

using 494 reads

====================================================================================

graph has 206 edges initially, 2 edges after simplification

total ucounts = 15
nonsolo ucounts = 5[4, 5, 9^2, 457]
surviving nonsolo ucounts = 1[457]
ids = [2]

====================================================================================

UMI info for barcode TATGCCCAGTGCCAGA-1 contig 1 = GAAGAGCTGC...
umi AGTACAGCTC = 456 reads: +391 validated

GOOD CONTIGS

TIG 1[bases=560]
0-33 ==> 19-52 on |282|IGKV3-20|5'UTR| [len=52] (mis=0)
33-79 ==> 0-46 on |283|IGKV3-20|L-REGION+V-REGION| [len=348] (mis=0)
85-387 ==> 46-348 on |283|IGKV3-20|L-REGION+V-REGION| [len=348] (mis=10)
386-424 ==> 0-38 on |213|IGKJ1|J-REGION| [len=38] (mis=5)
424-560 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 51 reads
cdr3 = CQQYCSSPLTF at 363, score = 9 + 9
umis assigned: [2]
of which 1 are surviving nonsolos
reads assigned: 453
start codons at 33, 247, 466
confident = false
see insertion of CAGTCT at pos 46 on |283|IGKV3-20|L-REGION+V-REGION|
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 92.119 = TATGCCCCAAGGACAC-1

using 9232 reads

====================================================================================

graph has 4534 edges initially, 92 edges after simplification

total ucounts = 795
nonsolo ucounts = 347[2^137, 3^70, 4^41, 5^27, 6^19, 7^9, 8^4, 9^8, 10^2, 11^3, 12^2, 30, 75, 105, 142, 149, 219, 227, 232, 236, 246^2, 248, 256, 261, 264, 277, 281, 296, 302, 330, 409, 413, 526, 758, 1115]
surviving nonsolo ucounts = 25[30, 75, 105, 142, 149, 219, 227, 232, 236, 246^2, 248, 256, 261, 264, 277, 281, 296, 302, 330, 409, 413, 526, 758, 1115]
ids = [248, 38, 312, 194, 76, 494, 540, 592, 605, 14, ...]

====================================================================================

UMI info for barcode TATGCCCCAAGGACAC-1 contig 1 = TGATCAGCAC...
umi AACACCATCC = 256 reads: -389X +1 -2XX +1 -2XX +2 -2XX +1 -4XX +1 -6XX +1 -4XX +2 -2XX +1 invalidated
umi AATAGTTTGT = 78 reads: +421 validated
umi ATGAAATCTG = 174 reads: -397X +1 -15XX +1 -2XX +1 -3XX +1 invalidated
umi CACGTGTTCA = 30 reads: +288 -17 +116 non-validated
umi CCTTTCTTGG = 103 reads: +421 validated
umi GTACCGGTGA = 617 reads: -388X +1 -8XX +1 -15XX +1 -2XX +1 -3XX +1 invalidated
umi TATCCCCGAG = 38 reads: -389X +2 -1X +2 -8XX +1 -2XX +1 -9XX +1 -2XX +1 -1XX +1 invalidated

UMI info for barcode TATGCCCCAAGGACAC-1 contig 2 = AGTCTGGGCC...
umi AAATGAATGG = 244 reads: +382 validated
umi AGTCTCTTGT = 247 reads: +382 validated
umi CATCAGGTTT = 283 reads: +382 validated
umi CCCAGTACCC = 303 reads: +382 validated
umi CCCGTTAACC = 329 reads: +382 validated
umi GCATCCGCGA = 275 reads: +229 -1XX +152 invalidated
umi TATTTTAATG = 235 reads: +382 validated
umi TCACTTTTCA = 255 reads: +382 validated
umi TTGGCGGACC = 272 reads: +382 validated

GOOD CONTIGS

TIG 1[bases=632]
0-29 ==> 50-79 on |141|IGHV3-48|5'UTR| [len=79] (mis=0)
29-382 ==> 0-353 on |142|IGHV3-48|L-REGION+V-REGION| [len=353] (mis=28)
404-450 ==> 0-46 on |54|IGHJ4|J-REGION| [len=46] (mis=11)
450-632 ==> 0-182 on |40|IGHG1|C-REGION| [len=884] (mis=1)
junction support: 3 umis using 33 reads
cdr3 = CARVQGSSPWTASDFW at 371, score = 9 + 6
umis assigned: [18, 38, 194, 248, 312, 502, 592]
of which 7 are surviving nonsolos
reads assigned: 1009
start codons at 29, 180, 185, 264, 332, 437
confident = true

TIG 2[bases=633]
0-40 ==> 211-251 on |358|IGLV3-21|5'UTR| [len=251] (mis=0)
40-382 ==> 0-342 on |359|IGLV3-21|L-REGION+V-REGION| [len=351] (mis=19)
384-422 ==> 0-38 on |311|IGLJ2|J-REGION| [len=38] (mis=3)
422-633 ==> 0-211 on |306|IGLC2|C-REGION| [len=317] (mis=0)
junction support: 9 umis using 436 reads
cdr3 = CQVWDSSSDSVLF at 355, score = 7 + 8
umis assigned: [14, 149, 266, 286, 293, 436, 605, 612, 768]
of which 9 are surviving nonsolos
reads assigned: 2379
start codons at 40, 101, 239, 242, 338
confident = true

REJECT CONTIGS

TIG 1[bases=541]
1-28 ==> 5785-5812 on segment before IGLV2-34 exon 1 [len=6000] (mis=1)
23-89 ==> 5809-5875 on segment before IGLV2-34 exon 1 [len=6000] (mis=2)
42-177 ==> 0-135 on |337|IGLV2-11|L-REGION+V-REGION| [len=358] (mis=2)
177-298 ==> 219-340 on |337|IGLV2-11|L-REGION+V-REGION| [len=358] (mis=5)
330-541 ==> 0-211 on |306|IGLC2|C-REGION| [len=317] (mis=0)
cdr3 = CCSYADSPVII at 282, score = 7 + 6
umis assigned: [20, 76, 349, 406, 494, 540, 583, 625, 760]
of which 9 are surviving nonsolos
reads assigned: 3795
start codons at 42, 265, 292
confident = false
not full
not full
now this is a cell
paired!

GAGGACGCGGCTGTGTATTACTGTGCGAGAGTACAGGGGAGTAGTCCCTGGACGGCGAGTGACTTCTGGGGCCGGGGATCCCTGGTCATGGTCTCCTCGG <==> AGGGTCGAAGCCGACGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATTCCGTGCTATTCGGCGGCGGGACCAAGCTGACCGTCCTAG

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 92.122 = TATGCCCCAATAAGCA-1

using 3151 reads

====================================================================================

graph has 2777 edges initially, 92 edges after simplification

total ucounts = 1048
nonsolo ucounts = 472[2^229, 3^107, 4^53, 5^30, 6^21, 7^11, 8^7, 9^2, 10^5, 11, 12^2, 16, 313, 360, 383]
surviving nonsolo ucounts = 3[313, 360, 383]
ids = [1045, 1002, 977]

====================================================================================

UMI info for barcode TATGCCCCAATAAGCA-1 contig 1 = GGGAATCAGT...
umi TTATGGCGGA = 386 reads: +388 validated
umi TTCTCTATCC = 362 reads: +388 validated
umi TTTTGTCATA = 316 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=551]
0-27 ==> 0-27 on |222|IGKV1-17|5'UTR| [len=27] (mis=1)
27-378 ==> 0-351 on |223|IGKV1-17|L-REGION+V-REGION| [len=351] (mis=19)
377-415 ==> 0-38 on |213|IGKJ1|J-REGION| [len=38] (mis=1)
415-551 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 3 umis using 177 reads
cdr3 = CLQYSSSPWTF at 354, score = 9 + 8
umis assigned: [977, 1002, 1045]
of which 3 are surviving nonsolos
reads assigned: 1045
start codons at 27, 33, 102, 238, 457
confident = true
now this is a cell
NOT paired!
sorting bam, mem = 0.07
running samtools sort -l 8G -o /scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk092-ucc6a7a72ce/files/contig_bam_sorted.bam /scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk092-ucc6a7a72ce/files/contig_bam.bam

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

13.239 seconds used processing barcodes, peak mem = 0.24
