[stdout]

starting vdj_asm_asm, mem = 0.01
available mem = 844.20 GB
/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian assembly main /scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk053-ucc6a7a72ce /scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk053-ucc6a7a72ce/files /scratch/etanis/ST-118/multi/dimitri-multi/journal/SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ.fork0.chnk053.ucc6a7a72ce
n50_n50_rpu = 288

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.0 = CTGTGCTTCTTTAGTC-1

using 267 reads

====================================================================================

graph has 68 edges initially, 2 edges after simplification

total ucounts = 5
nonsolo ucounts = 2[3, 261]
surviving nonsolo ucounts = 1[261]
ids = [0]

====================================================================================

UMI info for barcode CTGTGCTTCTTTAGTC-1 contig 1 = GATCAGGACT...
umi ACTACGGTTG = 258 reads: +400 validated

GOOD CONTIGS

TIG 1[bases=523]
0-30 ==> 0-30 on |264|IGKV2-28|5'UTR| [len=30] (mis=0)
30-390 ==> 0-360 on |265|IGKV2-28|L-REGION+V-REGION| [len=360] (mis=8)
392-430 ==> 0-38 on |215|IGKJ3|J-REGION| [len=38] (mis=1)
430-523 ==> 0-93 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 57 reads
cdr3 = CMQALQIPPFTF at 366, score = 9 + 8
umis assigned: [0]
of which 1 are surviving nonsolos
reads assigned: 254
start codons at 30, 63, 99, 181, 187, 349, 369, 472
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.16 = CTGTTTAAGCTGCAAG-1

using 256 reads

====================================================================================

graph has 112 edges initially, 2 edges after simplification

total ucounts = 6
nonsolo ucounts = 3[2, 3, 248]
surviving nonsolo ucounts = 1[248]
ids = [1]

====================================================================================

UMI info for barcode CTGTTTAAGCTGCAAG-1 contig 1 = GCTACAACAG...
umi AGAGGGCCGG = 241 reads: +400 validated

GOOD CONTIGS

TIG 1[bases=477]
0-28 ==> 147-175 on |295|IGKV4-1|5'UTR| [len=175] (mis=0)
28-391 ==> 0-363 on |296|IGKV4-1|L-REGION+V-REGION| [len=363] (mis=0)
390-428 ==> 0-38 on |213|IGKJ1|J-REGION| [len=38] (mis=3)
428-477 ==> 0-49 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 40 reads
cdr3 = CQQYYSTPRTF at 367, score = 9 + 8
umis assigned: [1]
of which 1 are surviving nonsolos
reads assigned: 237
start codons at 28, 97, 350, 470
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.22 = CTGTTTAAGGTAGCTG-1

using 306 reads

====================================================================================

graph has 148 edges initially, 2 edges after simplification

total ucounts = 9
nonsolo ucounts = 2[2, 297]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================

UMI info for barcode CTGTTTAAGGTAGCTG-1 contig 1 = GGGGAACCAC...
umi CAGCTTCTTC = 273 reads: +418 validated

GOOD CONTIGS

TIG 1[bases=491]
52-405 ==> 0-353 on |736|IGHV1-8|L-REGION+V-REGION| [len=353] (mis=1)
411-433 ==> 9-31 on |21|IGHD3-3|D-REGION| [len=31] (mis=2)
422-470 ==> 0-48 on |55|IGHJ4|J-REGION| [len=48] (mis=5)
470-491 ==> 0-21 on |6|IGHD|C-REGION| [len=1289] (mis=0)
junction support: 1 umis using 22 reads
cdr3 = CARVLRFWSGYYGYW at 394, score = 9 + 7
umis assigned: [1]
of which 0 are surviving nonsolos
reads assigned: 267
start codons at 52, 203, 250, 255, 259, 287, 316, 349, 428
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.24 = CTGTTTAAGTACGTTC-1

using 14088 reads

====================================================================================

graph has 4991 edges initially, 50 edges after simplification

total ucounts = 726
nonsolo ucounts = 354[2^130, 3^61, 4^40, 5^18, 6^19, 7^9, 8^10, 9^5, 10^2, 11^2, 13, 14, 15^2, 32, 33, 35, 49, 80, 88, 98, 109, 113, 117, 157, 164, 165, 166, 168, 199^2, 202^2, 209, 210^2, 215, 232, 233, 236, 242, 252, 255, 256, 258, 262, 274, 276, 279, 282, 285, 296, 299^2, 300, 308, 315^2, 316, 317, 319, 331^2, 338, 361, 372, 404, 559]
surviving nonsolo ucounts = 49[80, 88, 98, 109, 113, 117, 157, 164, 165, 166, 168, 199^2, 202^2, 209, 210^2, 215, 232, 233, 236, 242, 255, 256, 258, 262, 274, 276, 279, 282, 285, 296, 299^2, 300, 308, 315^2, 316, 317, 319, 331^2, 338, 361, 372, 404, 559]
ids = [433, 599, 609, 673, 262, 672, 434, 685, 231, 651, ...]

====================================================================================

UMI info for barcode CTGTTTAAGTACGTTC-1 contig 1 = GAGCTACAAC...
umi AAAGAAGGTG = 214 reads: +400 validated
umi AACCATTTCA = 280 reads: +400 validated
umi AATTCGTGTA = 258 reads: +400 validated
umi ACAAATTATA = 296 reads: +400 validated
umi AGCTTCACTA = 282 reads: +400 validated
umi AGTCTACACG = 361 reads: +400 validated
umi ATAAAGCTTA = 307 reads: +400 validated
umi ATAGGGGCCG = 298 reads: +400 validated
umi ATCAACATCG = 237 reads: +400 validated
umi ATCATTACCA = 340 reads: +400 validated
umi ATCCCTTCCC = 405 reads: +400 validated
umi ATTGGCCAAG = 557 reads: -270 +130 non-validated
umi CAGAAACCTC = 169 reads: +400 validated
umi CAGCTGGGTT = 327 reads: +400 validated
umi CAGGACACTG = 254 reads: +400 validated
umi CCAATTTCGT = 115 reads: +400 validated
umi CCGTTCACGT = 299 reads: +400 validated
umi CCTATACGCT = 212 reads: +400 validated
umi CCTATCCGGG = 1 reads: -347X +2 -2X +2 -3X +1 -1X +1 -2X +2 -2X +10 -1 +22 -2 invalidated
umi CTACCGGTAG = 207 reads: +400 validated
umi CTAGGGCCGG = 262 reads: +400 validated
umi CTATCATCAC = 195 reads: +400 validated
umi CTATCCACCT = 8 reads: -335X +1 -3XX +1 -1XX +1 -5XX +2 -2XX +2 -3XX +1 -1XX +1 -2XX +2 -2XX +35 invalidated
umi CTCGTAGGCT = 258 reads: +400 validated
umi CTCTTGTATG = 315 reads: +400 validated
umi CTTTGATGGC = 319 reads: +400 validated
umi CTTTTGTGGC = 312 reads: +400 validated
umi GATGTGTGTA = 313 reads: +400 validated
umi GCGGCCGTGT = 81 reads: +400 validated
umi GCGGCCGTTT = 158 reads: +400 validated
umi GGTTTACCAT = 168 reads: +400 validated
umi GTAATCCTGC = 200 reads: +400 validated
umi GTTGTCACGC = 234 reads: +400 validated
umi TACTCGGGGC = 297 reads: +400 validated
umi TCAATTGCGC = 315 reads: +400 validated
umi TCCTGTCGGA = 228 reads: +400 validated
umi TCTACTGGTC = 89 reads: +400 validated
umi TCTGCACTGC = 98 reads: +400 validated
umi TGCCATGAAG = 352 reads: -366X +2 -1XX +2 -1XX +5 -1XX +9 -1XX +4 -1XX +7 invalidated
umi TGCCGTAGAA = 281 reads: +400 validated
umi TGTTGGTCAA = 168 reads: +400 validated
umi TTAATACAAC = 227 reads: +400 validated
umi TTACCCTATC = 272 reads: +400 validated
umi TTATATGTGG = 109 reads: +400 validated
umi TTCGGCGGGG = 166 reads: +400 validated
umi TTGTTGTGCG = 88 reads: -359X +1 -6XX +2 -1XX +2 -1XX +5 -1XX +9 -1XX +4 -1XX +7 invalidated
umi TTTACTCGCC = 206 reads: +400 validated

UMI info for barcode CTGTTTAAGTACGTTC-1 contig 2 = AGAGCCTGCT...
umi AGTTAATTTG = 220 reads: +34 -1XX +401 invalidated
umi CTTGGTGCTC = 278 reads: +436 validated
umi TTATAGCTCC = 110 reads: +344 -7 +3 -1 +1 -2 +8 -2 +1 -1 +41 -2 +6 -2X +15 invalidated

GOOD CONTIGS

TIG 1[bases=566]
0-30 ==> 145-175 on |295|IGKV4-1|5'UTR| [len=175] (mis=0)
30-393 ==> 0-363 on |296|IGKV4-1|L-REGION+V-REGION| [len=363] (mis=0)
392-430 ==> 0-38 on |213|IGKJ1|J-REGION| [len=38] (mis=3)
430-566 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 43 umis using 1385 reads
cdr3 = CQQYYSTPPTF at 369, score = 9 + 8
umis assigned: [7, 14, 48, 52, 129, 143, 149, 158, 165, 171] and 37 others
of which 46 are surviving nonsolos
reads assigned: 10991
start codons at 30, 99, 352, 472
confident = true

TIG 2[bases=557]
0-50 ==> 2-52 on |206|IGHV6-1|5'UTR| [len=52] (mis=0)
50-415 ==> 0-365 on |207|IGHV6-1|L-REGION+V-REGION| [len=365] (mis=0)
436-486 ==> 0-50 on |53|IGHJ3|J-REGION| [len=50] (mis=1)
486-557 ==> 0-71 on |60|IGHM|C-REGION| [len=1358] (mis=0)
junction support: 2 umis using 39 reads
cdr3 = CARDPGSSGWFDAFDIW at 404, score = 10 + 8
umis assigned: [144, 377, 672]
of which 3 are surviving nonsolos
reads assigned: 592
start codons at 50, 94, 291, 297, 438, 467
confident = true
now this is a cell
paired!

GACACGGCTGTGTATTACTGTGCAAGAGATCCAGGTAGCAGTGGCTGGTTCGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG <==> ATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTCCGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.28 = CTGTTTAAGTCACGCC-1

using 303 reads

====================================================================================

graph has 172 edges initially, 4 edges after simplification

total ucounts = 16
nonsolo ucounts = 9[4, 6^3, 7, 9, 15, 19, 224]
surviving nonsolo ucounts = 1[224]
ids = [6]

====================================================================================

UMI info for barcode CTGTTTAAGTCACGCC-1 contig 1 = GGGGTCTCAG...
umi ATATTGCTTG = 218 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=531]
0-38 ==> 125-163 on |346|IGLV2-8|5'UTR| [len=163] (mis=0)
38-392 ==> 0-354 on |347|IGLV2-8|L-REGION+V-REGION| [len=354] (mis=13)
388-426 ==> 0-38 on |311|IGLJ2|J-REGION| [len=38] (mis=5)
426-531 ==> 0-105 on |306|IGLC2|C-REGION| [len=317] (mis=0)
junction support: 1 umis using 31 reads
cdr3 = CSSHAGSTRVLF at 362, score = 8 + 8
umis assigned: [6]
of which 1 are surviving nonsolos
reads assigned: 213
start codons at 38, 195, 246, 345, 372
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.29 = CTGTTTAAGTCTTGCA-1

using 48 reads

====================================================================================

graph has 20 edges initially, 2 edges after simplification

total ucounts = 3
nonsolo ucounts = 2[5, 42]
surviving nonsolo ucounts = 1[42]
ids = [1]

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.32 = CTGTTTACAAACTGCT-1

using 912 reads

====================================================================================

graph has 394 edges initially, 4 edges after simplification

total ucounts = 7
nonsolo ucounts = 3[238, 284, 386]
surviving nonsolo ucounts = 3[238, 284, 386]
ids = [3, 2, 1]

====================================================================================

UMI info for barcode CTGTTTACAAACTGCT-1 contig 1 = AGTCAGACTC...
umi CACCTCGCAT = 290 reads: +388 validated
umi GTTAATACTA = 248 reads: +188 -1XX +199 invalidated

UMI info for barcode CTGTTTACAAACTGCT-1 contig 2 = AGCACTGAAC...
umi ATGGTATAGA = 328 reads: +424 validated

GOOD CONTIGS

TIG 1[bases=548]
0-24 ==> 157-181 on |232|IGKV1-5|5'UTR| [len=181] (mis=1)
24-375 ==> 0-351 on |233|IGKV1-5|L-REGION+V-REGION| [len=351] (mis=8)
375-412 ==> 0-37 on |216|IGKJ4|J-REGION| [len=37] (mis=1)
412-548 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 2 umis using 70 reads
cdr3 = CQQYNSYPLTF at 351, score = 8 + 9
umis assigned: [2, 3]
of which 2 are surviving nonsolos
reads assigned: 515
start codons at 24, 30, 86, 99, 235, 238, 331, 454
confident = true

TIG 2[bases=504]
0-24 ==> 56-80 on |125|IGHV3-33|5'UTR| [len=80] (mis=0)
24-375 ==> 0-351 on |126|IGHV3-33|L-REGION+V-REGION| [len=351] (mis=5)
400-448 ==> 0-48 on |55|IGHJ4|J-REGION| [len=48] (mis=5)
448-504 ==> 0-56 on |6|IGHD|C-REGION| [len=1289] (mis=0)
junction support: 1 umis using 40 reads
cdr3 = CAKNLYGGSGSYSLDYW at 366, score = 9 + 7
umis assigned: [1]
of which 1 are surviving nonsolos
reads assigned: 322
start codons at 24, 175, 180, 238, 241, 259, 327, 382, 466
confident = true
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.33 = CTGTTTACAAAGTGCG-1

using 3152 reads

====================================================================================

graph has 2197 edges initially, 24 edges after simplification

total ucounts = 523
nonsolo ucounts = 196[2^81, 3^29, 4^27, 5^15, 6^13, 7^5, 8^4, 9^5, 10^3, 11^4, 12, 14, 102, 134, 194, 214, 230, 249, 372, 608]
surviving nonsolo ucounts = 7[102, 134, 214, 230, 249, 372, 608]
ids = [104, 346, 117, 27, 462, 277, 188]

====================================================================================

UMI info for barcode CTGTTTACAAAGTGCG-1 contig 1 = GAGAGACTGA...
umi AAGGTCATGG = 235 reads: +406 validated
umi ATTAATCGAA = 211 reads: +406 validated
umi CCCAAAAGCT = 610 reads: -169 +237 non-validated
umi TGCGGCTATG = 248 reads: +406 validated

UMI info for barcode CTGTTTACAAAGTGCG-1 contig 2 = TTTGTATTCA...
umi ATCGCGTGTG = 107 reads: +394 -2 +22 non-validated
umi GGGAGCCCCT = 128 reads: +418 validated
umi TGAGAAGGAG = 70 reads: +8 -1XX +5 -1XX +23 -2XX +2 -1XX +10 -1XX +4 -1XX +1 -1XX +1 -1XX +35 -1XX +3 -1XX +20 -1XX +19 -2XX +2 -2XX +3 -4XX +3 -259 invalidated

GOOD CONTIGS

TIG 1[bases=654]
0-37 ==> 0-37 on |391|IGLV9-49|5'UTR| [len=37] (mis=0)
37-406 ==> 0-369 on |392|IGLV9-49|L-REGION+V-REGION| [len=369] (mis=6)
405-443 ==> 0-38 on |313|IGLJ3|J-REGION| [len=38] (mis=4)
443-654 ==> 0-211 on |307|IGLC3|C-REGION| [len=317] (mis=0)
junction support: 4 umis using 256 reads
cdr3 = CGADHGSGSYFVWVF at 370, score = 5 + 8
umis assigned: [27, 117, 188, 462]
of which 4 are surviving nonsolos
reads assigned: 1287
start codons at 37, 235, 275, 353, 383
confident = true

TIG 2[bases=548]
0-40 ==> 40-80 on |107|IGHV3-13|5'UTR| [len=80] (mis=0)
40-390 ==> 0-350 on |108|IGHV3-13|L-REGION+V-REGION| [len=350] (mis=19)
410-458 ==> 0-48 on |55|IGHJ4|J-REGION| [len=48] (mis=5)
458-548 ==> 0-90 on |40|IGHG1|C-REGION| [len=884] (mis=1)
junction support: 1 umis using 23 reads
cdr3 = CARARWGAAGHVFDYW at 379, score = 9 + 5
umis assigned: [104, 346, 453]
of which 2 are surviving nonsolos
reads assigned: 293
start codons at 40, 196, 314, 340, 393
confident = true
now this is a cell
paired!

GGGGACACGGCTGTGTATTACTGTGCACGAGCCAGATGGGGGGCCGCTGGGCACGTCTTTGACTACTGGGGCCAGGGAATCCTGGTCGCCGTCACCTCAG <==> CAGGAAGAGGATGAGGGTGACTACCACTGTGGGGCAGACCATGGCAGTGGGAGCTATTTCGTGTGGGTGTTCGGCGGTGGGACGAAGCTGACCGTCCTGG

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.38 = CTGTTTACAATAGCGG-1

using 197 reads

====================================================================================

graph has 76 edges initially, 2 edges after simplification

total ucounts = 6
nonsolo ucounts = 2[2, 191]
surviving nonsolo ucounts = 1[191]
ids = [3]

====================================================================================

UMI info for barcode CTGTTTACAATAGCGG-1 contig 1 = AAAAACCACA...
umi TACATAGTTC = 181 reads: +436 validated

GOOD CONTIGS

TIG 1[bases=543]
0-50 ==> 9-59 on |64|IGHV1-18|5'UTR| [len=59] (mis=1)
50-403 ==> 0-353 on |65|IGHV1-18|L-REGION+V-REGION| [len=353] (mis=22)
452-486 ==> 12-46 on |54|IGHJ4|J-REGION| [len=46] (mis=0)
486-543 ==> 0-57 on |1|IGHA1|C-REGION| [len=1058] (mis=0)
junction support: 1 umis using 16 reads
cdr3 = CARDKHFRDPYYHYSGALDHW at 392, score = 7 + 7
umis assigned: [3]
of which 1 are surviving nonsolos
reads assigned: 178
start codons at 50, 248, 253, 270, 314, 347
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.43 = CTGTTTACAATTCCTT-1

using 355 reads

====================================================================================

graph has 138 edges initially, 2 edges after simplification

total ucounts = 11
nonsolo ucounts = 4[2, 4, 5, 337]
surviving nonsolo ucounts = 1[337]
ids = [2]

====================================================================================

UMI info for barcode CTGTTTACAATTCCTT-1 contig 1 = CAGAGCTCTG...
umi CAGTCTTTCA = 343 reads: +385 validated

GOOD CONTIGS

TIG 1[bases=566]
0-45 ==> 7-52 on |282|IGKV3-20|5'UTR| [len=52] (mis=0)
45-393 ==> 0-348 on |283|IGKV3-20|L-REGION+V-REGION| [len=348] (mis=1)
391-430 ==> 0-39 on |214|IGKJ2|J-REGION| [len=39] (mis=5)
430-566 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 46 reads
cdr3 = CQQYGSSPKTF at 369, score = 9 + 8
umis assigned: [2]
of which 1 are surviving nonsolos
reads assigned: 336
start codons at 45, 253, 379, 472
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.44 = CTGTTTACACACCGCA-1

using 626 reads

====================================================================================

graph has 256 edges initially, 4 edges after simplification

total ucounts = 7
nonsolo ucounts = 4[2^2, 234, 385]
surviving nonsolo ucounts = 2[234, 385]
ids = [6, 2]

====================================================================================

UMI info for barcode CTGTTTACACACCGCA-1 contig 1 = ACTGTGGGGG...
umi TCCACTGGAC = 229 reads: +403 validated

UMI info for barcode CTGTTTACACACCGCA-1 contig 2 = TGGGAGGAAT...
umi CTTTCATGGG = 390 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=533]
0-28 ==> 0-28 on |380|IGLV5-45|5'UTR| [len=28] (mis=1)
28-397 ==> 0-369 on |381|IGLV5-45|L-REGION+V-REGION| [len=369] (mis=12)
393-431 ==> 0-38 on |313|IGLJ3|J-REGION| [len=38] (mis=0)
431-533 ==> 0-102 on |306|IGLC2|C-REGION| [len=317] (mis=0)
junction support: 1 umis using 34 reads
cdr3 = CMIWHSSAWVF at 370, score = 8 + 8
umis assigned: [6]
of which 1 are surviving nonsolos
reads assigned: 223
start codons at 28, 170, 187, 302, 314, 353, 373
confident = false

TIG 2[bases=555]
31-382 ==> 0-351 on |223|IGKV1-17|L-REGION+V-REGION| [len=351] (mis=19)
381-419 ==> 0-38 on |213|IGKJ1|J-REGION| [len=38] (mis=1)
419-555 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 62 reads
cdr3 = CLQYSSSPWTF at 358, score = 9 + 8
umis assigned: [2]
of which 1 are surviving nonsolos
reads assigned: 380
start codons at 31, 37, 106, 242, 461
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.49 = CTGTTTACACGTGAGA-1

using 560 reads

====================================================================================

graph has 190 edges initially, 2 edges after simplification

total ucounts = 11
nonsolo ucounts = 4[2^2, 274, 275]
surviving nonsolo ucounts = 2[274, 275]
ids = [3, 5]

====================================================================================

UMI info for barcode CTGTTTACACGTGAGA-1 contig 1 = AGCTGTGGGC...
umi CCTTGGTTGT = 267 reads: +382 validated
umi CTCCTCGGTG = 268 reads: +382 validated

GOOD CONTIGS

TIG 1[bases=543]
0-40 ==> 0-40 on |356|IGLV3-19|5'UTR| [len=40] (mis=0)
40-377 ==> 0-337 on |357|IGLV3-19|L-REGION+V-REGION| [len=337] (mis=0)
384-422 ==> 0-38 on |313|IGLJ3|J-REGION| [len=38] (mis=0)
422-543 ==> 0-121 on |307|IGLC3|C-REGION| [len=317] (mis=0)
junction support: 2 umis using 76 reads
cdr3 = CNSRDSSGNHWVF at 355, score = 8 + 8
umis assigned: [3, 5]
of which 2 are surviving nonsolos
reads assigned: 529
start codons at 40, 159, 188, 239, 338
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.53 = CTGTTTACAGCGTAAG-1

using 324 reads

====================================================================================

graph has 108 edges initially, 2 edges after simplification

total ucounts = 6
nonsolo ucounts = 2[2, 318]
surviving nonsolo ucounts = 1[318]
ids = [5]

====================================================================================

UMI info for barcode CTGTTTACAGCGTAAG-1 contig 1 = GGGTCCAAAC...
umi TTCAGCTCAC = 316 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=642]
43-395 ==> 0-352 on |333|IGLV10-54|L-REGION+V-REGION| [len=352] (mis=18)
393-431 ==> 0-38 on |313|IGLJ3|J-REGION| [len=38] (mis=1)
431-642 ==> 0-211 on |307|IGLC3|C-REGION| [len=317] (mis=0)
junction support: 1 umis using 44 reads
cdr3 = CSAWDSSLNVWVF at 364, score = 7 + 8
umis assigned: [5]
of which 1 are surviving nonsolos
reads assigned: 313
start codons at 43, 182, 372, 389
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.55 = CTGTTTACAGCTGCAC-1

using 10571 reads

====================================================================================

graph has 5655 edges initially, 100 edges after simplification

total ucounts = 1090
nonsolo ucounts = 495[2^195, 3^99, 4^66, 5^35, 6^22, 7^15, 8^14, 9^5, 10^8, 11^5, 12, 15, 28, 112, 143, 169, 209, 210, 235, 238, 270, 271, 273, 276, 282, 283, 287, 289, 310, 311, 312, 313, 318, 323, 334, 340, 371, 381, 390, 419, 597]
surviving nonsolo ucounts = 28[112, 143, 169, 209, 210, 235, 238, 270, 271, 273, 276, 282, 283, 287, 289, 310, 311, 312, 313, 318, 323, 334, 340, 371, 381, 390, 419, 597]
ids = [290, 669, 42, 810, 61, 100, 997, 489, 922, 420, ...]

====================================================================================

UMI info for barcode CTGTTTACAGCTGCAC-1 contig 1 = GAGCTGCTCA...
umi AACTCCCCTC = 170 reads: +388 validated
umi AATAAACGCC = 337 reads: +388 validated
umi ACAGGAGGGT = 235 reads: +388 validated
umi AGTGTGTCTT = 307 reads: +388 validated
umi CACCAACCTG = 326 reads: +6 -1XX +7 -1XX +59 -1XX +10 -1XX +58 -1XX +3 -1XX +2 -3XX +1 -1XX +1 -5XX +11 -1XX +37 -1XX +8 -1XX +20 -1XX +51 -1XX +2 -1XX +20 -1XX +15 -2XX +1 -1XX +1 -1XX +1 -1XX +2 -2XX +2 -4XX +1 -1XX +2 -1XX +3 -1XX +4 -2XX +8 -2XX +4 -1XX +7 invalidated
umi CGATTGTGCA = 279 reads: +388 validated
umi CGTACTATAG = 311 reads: +388 validated
umi CTCTGCAATC = 423 reads: +388 validated
umi CTGGAGGCAA = 272 reads: +388 validated
umi GCCCGAAGAA = 314 reads: +388 validated
umi GCCTGGTCAT = 283 reads: +388 validated
umi TGCCAATGGA = 334 reads: +388 validated

UMI info for barcode CTGTTTACAGCTGCAC-1 contig 2 = ACTTTCTGAG...
umi AAGGTTACCT = 212 reads: +427 validated
umi ATTTAACTCT = 108 reads: -363 +1 -8X +1 -3X +1 -3X +1 -4X +5 -2X +35 invalidated
umi ATTTCACTCG = 576 reads: -357 +1 -4X +1 -9XX +1 -3XX +1 -3XX +1 -4XX +5 -2XX +35 invalidated
umi GAAACTATCT = 316 reads: -387X +14 -1XX +2 -1XX +3 -2XX +17 invalidated
umi TATGATTCAT = 205 reads: -387X +3 -2X +35 invalidated

GOOD CONTIGS

TIG 1[bases=554]
0-30 ==> 22-52 on |282|IGKV3-20|5'UTR| [len=52] (mis=0)
30-378 ==> 0-348 on |283|IGKV3-20|L-REGION+V-REGION| [len=348] (mis=9)
379-418 ==> 0-39 on |214|IGKJ2|J-REGION| [len=39] (mis=1)
418-554 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 11 umis using 516 reads
cdr3 = CQQYGTSPGCSF at 354, score = 9 + 7
umis assigned: [42, 65, 100, 214, 309, 420, 440, 482, 489, 594] and 2 others
of which 12 are surviving nonsolos
reads assigned: 3503
start codons at 30, 238, 364, 460
confident = true

TIG 2[bases=644]
0-35 ==> 66-101 on |195|IGHV4-61|5'UTR| [len=101] (mis=1)
35-391 ==> 0-356 on |196|IGHV4-61|L-REGION+V-REGION| [len=356] (mis=20)
414-462 ==> 0-48 on |55|IGHJ4|J-REGION| [len=48] (mis=4)
462-644 ==> 0-182 on |40|IGHG1|C-REGION| [len=884] (mis=1)
junction support: 1 umis using 15 reads
cdr3 = CARTPLYNWNPWYFDVW at 380, score = 9 + 7
umis assigned: [61, 290, 292, 523, 810]
of which 5 are surviving nonsolos
reads assigned: 1401
start codons at 35, 79
confident = true

REJECT CONTIGS

TIG 1[bases=564]
0-47 ==> 0-47 on |278|IGKV3-11|5'UTR| [len=47] (mis=2)
20-72 ==> 5709-5761 on segment before IGKV3OR2-5 exon 1 [len=6000] (mis=3)
47-359 ==> 0-312 on |279|IGKV3-11|L-REGION+V-REGION| [len=345] (mis=15)
390-428 ==> 0-38 on |217|IGKJ5|J-REGION| [len=38] (mis=8)
428-564 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
umis assigned: [198, 224, 313, 354, 432, 569, 656, 669, 897, 922] and 1 others
of which 11 are surviving nonsolos
reads assigned: 3184
start codons at 47, 255, 426, 470
confident = false
did not find CDR3
now this is a cell
paired!

GACACGGCCGTCTATTACTGTGCGAGAACCCCCCTTTATAACTGGAACCCGTGGTACTTTGACGTCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG <==> AGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTACCTCACCGGGGTGCAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.58 = CTGTTTACAGGGAGAG-1

using 491 reads

====================================================================================

graph has 176 edges initially, 6 edges after simplification

total ucounts = 3
nonsolo ucounts = 2[242, 248]
surviving nonsolo ucounts = 2[242, 248]
ids = [0, 2]

====================================================================================

UMI info for barcode CTGTTTACAGGGAGAG-1 contig 1 = AGTCAGACCC...
umi CAGAGCGGGT = 236 reads: +388 validated

UMI info for barcode CTGTTTACAGGGAGAG-1 contig 2 = TGATCAGGAC...
umi GAAGTTGGAA = 241 reads: +400 validated

GOOD CONTIGS

TIG 1[bases=496]
0-24 ==> 157-181 on |232|IGKV1-5|5'UTR| [len=181] (mis=0)
24-375 ==> 0-351 on |233|IGKV1-5|L-REGION+V-REGION| [len=351] (mis=1)
374-412 ==> 0-38 on |217|IGKJ5|J-REGION| [len=38] (mis=0)
412-496 ==> 0-84 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 55 reads
cdr3 = CQQYNSYSITF at 351, score = 8 + 8
umis assigned: [0]
of which 1 are surviving nonsolos
reads assigned: 231
start codons at 24, 30, 86, 99, 331, 454
confident = false

TIG 2[bases=515]
0-31 ==> 5-36 on |272|IGKV2D-28|5'UTR| [len=36] (mis=0)
31-391 ==> 0-360 on |273|IGKV2D-28|L-REGION+V-REGION| [len=360] (mis=1)
392-431 ==> 0-39 on |214|IGKJ2|J-REGION| [len=39] (mis=3)
431-515 ==> 0-84 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 31 reads
cdr3 = CMQALQTPGYTF at 367, score = 9 + 8
umis assigned: [2]
of which 1 are surviving nonsolos
reads assigned: 236
start codons at 31, 64, 100, 188, 350, 370, 473
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.59 = CTGTTTACAGTCACTA-1

using 177 reads

====================================================================================

graph has 48 edges initially, 2 edges after simplification

total ucounts = 1
nonsolo ucounts = 1[177]
surviving nonsolo ucounts = 1[177]
ids = [0]

====================================================================================

UMI info for barcode CTGTTTACAGTCACTA-1 contig 1 = TGAGCGCAGA...
umi GTCATTCCAT = 168 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=442]
0-36 ==> 0-36 on |330|IGLV1-51|5'UTR| [len=36] (mis=0)
36-389 ==> 0-353 on |331|IGLV1-51|L-REGION+V-REGION| [len=353] (mis=13)
386-424 ==> 0-38 on |313|IGLJ3|J-REGION| [len=38] (mis=1)
junction support: 1 umis using 22 reads
cdr3 = CGAWDTSLSAWVF at 357, score = 7 + 8
umis assigned: [0]
of which 1 are surviving nonsolos
reads assigned: 167
start codons at 36, 190, 241, 365
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.60 = CTGTTTACATAAAGGT-1

using 287 reads

====================================================================================

graph has 132 edges initially, 40 edges after simplification

total ucounts = 9
nonsolo ucounts = 3[2, 118, 161]
surviving nonsolo ucounts = 2[118, 161]
ids = [3, 0]

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.72 = CTGTTTACATTACCTT-1

using 33 reads

====================================================================================

graph has 42 edges initially, 4 edges after simplification

total ucounts = 1
nonsolo ucounts = 1[33]
surviving nonsolo ucounts = 0[]
ids = []

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.84 = CTGTTTAGTATATCCG-1

using 278 reads

====================================================================================

graph has 88 edges initially, 2 edges after simplification

total ucounts = 4
nonsolo ucounts = 4[2^2, 5, 269]
surviving nonsolo ucounts = 1[269]
ids = [3]

====================================================================================

UMI info for barcode CTGTTTAGTATATCCG-1 contig 1 = AGCTGTGGGC...
umi TGTGGAAGAC = 264 reads: +382 validated

GOOD CONTIGS

TIG 1[bases=551]
0-40 ==> 0-40 on |356|IGLV3-19|5'UTR| [len=40] (mis=0)
40-377 ==> 0-337 on |357|IGLV3-19|L-REGION+V-REGION| [len=337] (mis=8)
384-422 ==> 0-38 on |311|IGLJ2|J-REGION| [len=38] (mis=3)
422-551 ==> 0-129 on |306|IGLC2|C-REGION| [len=317] (mis=0)
junction support: 1 umis using 36 reads
cdr3 = CNSRDSSGNHVVF at 355, score = 8 + 8
umis assigned: [3]
of which 1 are surviving nonsolos
reads assigned: 261
start codons at 40, 159, 239, 338, 383
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.94 = CTGTTTAGTCTAAAGA-1

using 662 reads

====================================================================================

graph has 262 edges initially, 28 edges after simplification

total ucounts = 10
nonsolo ucounts = 4[28, 142, 227, 259]
surviving nonsolo ucounts = 3[142, 227, 259]
ids = [3, 2, 0]

====================================================================================

UMI info for barcode CTGTTTAGTCTAAAGA-1 contig 1 = AGCTTCAGCT...
umi ACCCTACTGC = 261 reads: +388 validated

UMI info for barcode CTGTTTAGTCTAAAGA-1 contig 2 = AGCTTCAGCT...
umi CCCTTTGTCC = 227 reads: +84 -1XX +4 -1XX +1 -1XX +296 invalidated

UMI info for barcode CTGTTTAGTCTAAAGA-1 contig 3 = TCAGCACTGA...
umi CCCTTTTGCT = 131 reads: +424 validated

GOOD CONTIGS

TIG 1[bases=548]
0-47 ==> 67-114 on |322|IGLV1-44|5'UTR| [len=114] (mis=0)
47-400 ==> 0-353 on |323|IGLV1-44|L-REGION+V-REGION| [len=353] (mis=15)
397-435 ==> 0-38 on |313|IGLJ3|J-REGION| [len=38] (mis=3)
435-548 ==> 0-113 on |306|IGLC2|C-REGION| [len=317] (mis=0)
junction support: 1 umis using 41 reads
cdr3 = CASWDDSLRGRVF at 368, score = 8 + 8
umis assigned: [0]
of which 1 are surviving nonsolos
reads assigned: 257
start codons at 47, 201, 351, 376, 381
confident = false

TIG 2[bases=548]
0-47 ==> 67-114 on |322|IGLV1-44|5'UTR| [len=114] (mis=0)
47-400 ==> 0-353 on |323|IGLV1-44|L-REGION+V-REGION| [len=353] (mis=17)
397-435 ==> 0-38 on |311|IGLJ2|J-REGION| [len=38] (mis=1)
435-548 ==> 0-113 on |306|IGLC2|C-REGION| [len=317] (mis=0)
junction support: 1 umis using 22 reads
cdr3 = CAAWDASLIGVVF at 368, score = 8 + 8
umis assigned: [2]
of which 1 are surviving nonsolos
reads assigned: 219
start codons at 47, 252, 333, 351, 376, 381
confident = false

TIG 3[bases=507]
0-26 ==> 53-79 on |119|IGHV3-21|5'UTR| [len=79] (mis=0)
26-379 ==> 0-353 on |120|IGHV3-21|L-REGION+V-REGION| [len=353] (mis=18)
403-450 ==> 16-63 on |737|IGHJ6|J-REGION| [len=63] (mis=1)
450-507 ==> 0-57 on |43|IGHG2|C-REGION| [len=977] (mis=0)
junction support: 1 umis using 20 reads
cdr3 = CARDRAATARLGGMDVW at 368, score = 9 + 7
umis assigned: [3]
of which 1 are surviving nonsolos
reads assigned: 129
start codons at 26, 177, 182, 329, 407
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.99 = CTGTTTAGTGACAAAT-1

using 457 reads

====================================================================================

graph has 246 edges initially, 4 edges after simplification

total ucounts = 5
nonsolo ucounts = 3[3, 208, 244]
surviving nonsolo ucounts = 2[208, 244]
ids = [0, 1]

====================================================================================

UMI info for barcode CTGTTTAGTGACAAAT-1 contig 1 = GGGGAGGAAC...
umi ACCCTCAGCG = 228 reads: +382 validated

GOOD CONTIGS

TIG 1[bases=491]
0-36 ==> 11-47 on |278|IGKV3-11|5'UTR| [len=47] (mis=0)
36-381 ==> 0-345 on |279|IGKV3-11|L-REGION+V-REGION| [len=345] (mis=3)
381-418 ==> 0-37 on |216|IGKJ4|J-REGION| [len=37] (mis=0)
418-491 ==> 0-73 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 32 reads
cdr3 = CQQRSNWPLTF at 357, score = 9 + 9
umis assigned: [1]
of which 1 are surviving nonsolos
reads assigned: 225
start codons at 36, 244, 460
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.101 = CTGTTTAGTGCACCAC-1

using 293 reads

====================================================================================

graph has 134 edges initially, 2 edges after simplification

total ucounts = 9
nonsolo ucounts = 7[2^3, 4, 6, 11, 264]
surviving nonsolo ucounts = 1[264]
ids = [0]

====================================================================================

UMI info for barcode CTGTTTAGTGCACCAC-1 contig 1 = GATCAGGACT...
umi AACTCTCGCC = 262 reads: +397 validated

GOOD CONTIGS

TIG 1[bases=563]
0-30 ==> 0-30 on |264|IGKV2-28|5'UTR| [len=30] (mis=0)
30-390 ==> 0-360 on |265|IGKV2-28|L-REGION+V-REGION| [len=360] (mis=6)
390-427 ==> 0-37 on |216|IGKJ4|J-REGION| [len=37] (mis=1)
427-563 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 41 reads
cdr3 = CMQALQTPLTF at 366, score = 9 + 9
umis assigned: [0]
of which 1 are surviving nonsolos
reads assigned: 259
start codons at 30, 63, 99, 187, 349, 369, 469
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.102 = CTGTTTAGTGCCTGGT-1

using 204 reads

====================================================================================

graph has 58 edges initially, 2 edges after simplification

total ucounts = 9
nonsolo ucounts = 3[2, 14, 182]
surviving nonsolo ucounts = 1[182]
ids = [2]

====================================================================================

UMI info for barcode CTGTTTAGTGCCTGGT-1 contig 1 = GGGGAGGAAC...
umi CCAGTAAGGT = 180 reads: +382 validated

GOOD CONTIGS

TIG 1[bases=554]
0-36 ==> 61-97 on |280|IGKV3-15|5'UTR| [len=97] (mis=1)
36-381 ==> 0-345 on |281|IGKV3-15|L-REGION+V-REGION| [len=345] (mis=0)
380-418 ==> 0-38 on |213|IGKJ1|J-REGION| [len=38] (mis=1)
418-554 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 31 reads
cdr3 = CQQYNNWPWTF at 357, score = 9 + 8
umis assigned: [2]
of which 1 are surviving nonsolos
reads assigned: 178
start codons at 36, 105, 241, 460
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.109 = CTGTTTAGTTAGATGA-1

using 246 reads

====================================================================================

graph has 84 edges initially, 2 edges after simplification

total ucounts = 6
nonsolo ucounts = 3[2, 6, 235]
surviving nonsolo ucounts = 1[235]
ids = [5]

====================================================================================

UMI info for barcode CTGTTTAGTTAGATGA-1 contig 1 = GGAGTCAGTC...
umi TAGCTCCTGT = 216 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=484]
0-26 ==> 21-47 on |230|IGKV1-39|5'UTR| [len=47] (mis=0)
26-377 ==> 0-351 on |231|IGKV1-39|L-REGION+V-REGION| [len=351] (mis=11)
376-414 ==> 0-38 on |217|IGKJ5|J-REGION| [len=38] (mis=0)
414-484 ==> 0-70 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 33 reads
cdr3 = CQQSYRRPITF at 353, score = 8 + 8
umis assigned: [5]
of which 1 are surviving nonsolos
reads assigned: 214
start codons at 26, 32, 88, 101, 237, 336, 456
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.116 = CTGTTTATCAAAGACA-1

using 309 reads

====================================================================================

graph has 122 edges initially, 2 edges after simplification

total ucounts = 3
nonsolo ucounts = 1[307]
surviving nonsolo ucounts = 1[307]
ids = [2]

====================================================================================

UMI info for barcode CTGTTTATCAAAGACA-1 contig 1 = GGAGTCAGTC...
umi CATTACAGCC = 279 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=499]
0-26 ==> 21-47 on |230|IGKV1-39|5'UTR| [len=47] (mis=0)
26-377 ==> 0-351 on |231|IGKV1-39|L-REGION+V-REGION| [len=351] (mis=11)
376-414 ==> 0-38 on |217|IGKJ5|J-REGION| [len=38] (mis=0)
414-499 ==> 0-85 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 43 reads
cdr3 = CQQSYRRPITF at 353, score = 8 + 8
umis assigned: [2]
of which 1 are surviving nonsolos
reads assigned: 273
start codons at 26, 32, 88, 101, 237, 336, 456
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.118 = CTGTTTATCAACGAAA-1

using 248 reads

====================================================================================

graph has 110 edges initially, 2 edges after simplification

total ucounts = 12
nonsolo ucounts = 3[3, 6, 230]
surviving nonsolo ucounts = 1[230]
ids = [11]

====================================================================================

UMI info for barcode CTGTTTATCAACGAAA-1 contig 1 = GCTGGGGTCT...
umi TTTCCTCTTA = 215 reads: +391 validated

GOOD CONTIGS

TIG 1[bases=568]
0-41 ==> 0-41 on |338|IGLV2-14|5'UTR| [len=41] (mis=0)
41-393 ==> 0-352 on |339|IGLV2-14|L-REGION+V-REGION| [len=361] (mis=0)
394-432 ==> 0-38 on |311|IGLJ2|J-REGION| [len=38] (mis=0)
432-568 ==> 0-136 on |306|IGLC2|C-REGION| [len=317] (mis=0)
junction support: 1 umis using 33 reads
cdr3 = CSSYTSSSTHVVF at 365, score = 8 + 8
umis assigned: [11]
of which 1 are surviving nonsolos
reads assigned: 214
start codons at 41, 198, 242, 249, 393
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.126 = CTGTTTATCAGCTCGG-1

using 202 reads

====================================================================================

graph has 88 edges initially, 2 edges after simplification

total ucounts = 6
nonsolo ucounts = 2[2, 196]
surviving nonsolo ucounts = 1[196]
ids = [2]

====================================================================================

UMI info for barcode CTGTTTATCAGCTCGG-1 contig 1 = ACCCAAAAAC...
umi CTATCCTCAT = 188 reads: +436 validated

GOOD CONTIGS

TIG 1[bases=496]
0-54 ==> 5-59 on |64|IGHV1-18|5'UTR| [len=59] (mis=1)
54-407 ==> 0-353 on |65|IGHV1-18|L-REGION+V-REGION| [len=353] (mis=22)
456-490 ==> 12-46 on |54|IGHJ4|J-REGION| [len=46] (mis=0)
junction support: 1 umis using 21 reads
cdr3 = CARDKHFRDPYYHYSGALDHW at 396, score = 7 + 7
umis assigned: [2]
of which 1 are surviving nonsolos
reads assigned: 186
start codons at 54, 252, 257, 274, 318, 351
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.127 = CTGTTTATCAGCTCTC-1

using 351 reads

====================================================================================

graph has 82 edges initially, 2 edges after simplification

total ucounts = 6
nonsolo ucounts = 3[2^2, 344]
surviving nonsolo ucounts = 1[344]
ids = [0]

====================================================================================

UMI info for barcode CTGTTTATCAGCTCTC-1 contig 1 = AGTCTCAGTC...
umi ACTCTATTAC = 312 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=480]
0-20 ==> 3-23 on |252|IGKV1D-39|5'UTR| [len=23] (mis=0)
20-373 ==> 0-353 on |253|IGKV1D-39|L-REGION+V-REGION| [len=353] (mis=9)
371-408 ==> 0-37 on |216|IGKJ4|J-REGION| [len=37] (mis=0)
408-480 ==> 0-72 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 48 reads
cdr3 = CQQSYTTLLTF at 347, score = 9 + 9
umis assigned: [0]
of which 1 are surviving nonsolos
reads assigned: 309
start codons at 20, 26, 82, 95, 231, 450
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.128 = CTGTTTATCATGTCTT-1

using 429 reads

====================================================================================

graph has 146 edges initially, 12 edges after simplification

total ucounts = 9
nonsolo ucounts = 3[5, 121, 297]
surviving nonsolo ucounts = 2[121, 297]
ids = [6, 0]

====================================================================================

UMI info for barcode CTGTTTATCATGTCTT-1 contig 1 = CATGGACATG...
umi TCCTACCGCC = 118 reads: +388 validated

UMI info for barcode CTGTTTATCATGTCTT-1 contig 2 = GGGAGGAACT...
umi AGCCGGTCCT = 295 reads: +385 validated

GOOD CONTIGS

TIG 1[bases=525]
1-352 ==> 0-351 on |231|IGKV1-39|L-REGION+V-REGION| [len=351] (mis=11)
351-389 ==> 0-38 on |217|IGKJ5|J-REGION| [len=38] (mis=0)
389-525 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 27 reads
cdr3 = CQQSYRRPITF at 328, score = 8 + 8
umis assigned: [6]
of which 1 are surviving nonsolos
reads assigned: 117
start codons at 1, 7, 63, 76, 212, 311, 431
confident = false

TIG 2[bases=556]
0-35 ==> 12-47 on |278|IGKV3-11|5'UTR| [len=47] (mis=0)
35-380 ==> 0-345 on |279|IGKV3-11|L-REGION+V-REGION| [len=345] (mis=0)
382-420 ==> 0-38 on |217|IGKJ5|J-REGION| [len=38] (mis=0)
420-556 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 37 reads
cdr3 = CQQRSNWPPITF at 356, score = 9 + 8
umis assigned: [0]
of which 1 are surviving nonsolos
reads assigned: 293
start codons at 35, 240, 243, 462
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.149 = CTGTTTATCGTATCAG-1

using 1714 reads

====================================================================================

graph has 2324 edges initially, 24 edges after simplification

total ucounts = 696
nonsolo ucounts = 316[2^127, 3^64, 4^38, 5^30, 6^21, 7^10, 8^9, 9^4, 10^2, 11^2, 13, 14^2, 15, 16, 17, 20, 25, 106]
surviving nonsolo ucounts = 1[106]
ids = [359]

====================================================================================

UMI info for barcode CTGTTTATCGTATCAG-1 contig 1 = GCTCTGCTTC...
umi GCAGTACCAT = 101 reads: +391 validated

GOOD CONTIGS

TIG 1[bases=524]
0-51 ==> 0-51 on |320|IGLV1-40|5'UTR| [len=51] (mis=0)
51-407 ==> 0-356 on |321|IGLV1-40|L-REGION+V-REGION| [len=356] (mis=1)
404-442 ==> 0-38 on |311|IGLJ2|J-REGION| [len=38] (mis=3)
442-524 ==> 0-82 on |306|IGLC2|C-REGION| [len=317] (mis=0)
junction support: 1 umis using 16 reads
cdr3 = CQSYDSSLSGPVF at 375, score = 8 + 8
umis assigned: [359]
of which 1 are surviving nonsolos
reads assigned: 100
start codons at 51, 205, 208, 259, 358, 385
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.158 = CTGTTTATCTCTAGGA-1

using 150 reads

====================================================================================

graph has 67 edges initially, 2 edges after simplification

total ucounts = 5
nonsolo ucounts = 3[2, 3, 143]
surviving nonsolo ucounts = 1[143]
ids = [2]

====================================================================================
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.160 = CTGTTTATCTGGCGTG-1

using 394 reads

====================================================================================

graph has 92 edges initially, 2 edges after simplification

total ucounts = 13
nonsolo ucounts = 5[2^2, 3, 16, 363]
surviving nonsolo ucounts = 1[363]
ids = [10]

====================================================================================

UMI info for barcode CTGTTTATCTGGCGTG-1 contig 1 = GGGAGTCTCA...
umi TACATACTTC = 327 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=504]
0-23 ==> 0-23 on |252|IGKV1D-39|5'UTR| [len=23] (mis=2)
23-376 ==> 0-353 on |253|IGKV1D-39|L-REGION+V-REGION| [len=353] (mis=10)
374-411 ==> 0-37 on |216|IGKJ4|J-REGION| [len=37] (mis=0)
411-504 ==> 0-93 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 51 reads
cdr3 = CQQSYTTLLTF at 350, score = 9 + 9
umis assigned: [10]
of which 1 are surviving nonsolos
reads assigned: 326
start codons at 23, 29, 85, 98, 234, 453
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.163 = CTGTTTATCTGTCAAG-1

using 389 reads

====================================================================================

graph has 148 edges initially, 2 edges after simplification

total ucounts = 16
nonsolo ucounts = 7[2^4, 3, 4, 365]
surviving nonsolo ucounts = 1[365]
ids = [13]

====================================================================================

UMI info for barcode CTGTTTATCTGTCAAG-1 contig 1 = GGAGAAGAGC...
umi TCATGCACCA = 352 reads: +385 validated

GOOD CONTIGS

TIG 1[bases=502]
0-36 ==> 16-52 on |282|IGKV3-20|5'UTR| [len=52] (mis=0)
36-384 ==> 0-348 on |283|IGKV3-20|L-REGION+V-REGION| [len=348] (mis=9)
382-421 ==> 0-39 on |214|IGKJ2|J-REGION| [len=39] (mis=5)
421-502 ==> 0-81 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 53 reads
cdr3 = CHQYGSSPGTF at 360, score = 9 + 8
umis assigned: [13]
of which 1 are surviving nonsolos
reads assigned: 346
start codons at 36, 244, 370, 463
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.166 = CTGTTTATCTTGTCAT-1

using 98 reads

====================================================================================

graph has 38 edges initially, 2 edges after simplification

total ucounts = 4
nonsolo ucounts = 1[95]
surviving nonsolo ucounts = 1[95]
ids = [1]

====================================================================================

UMI info for barcode CTGTTTATCTTGTCAT-1 contig 1 = CTGGGCCTAA...
umi GGTCAGCGGG = 89 reads: +382 validated

GOOD CONTIGS

TIG 1[bases=462]
0-37 ==> 214-251 on |358|IGLV3-21|5'UTR| [len=251] (mis=0)
37-369 ==> 0-332 on |359|IGLV3-21|L-REGION+V-REGION| [len=351] (mis=36)
381-419 ==> 0-38 on |311|IGLJ2|J-REGION| [len=38] (mis=2)
419-462 ==> 0-43 on |306|IGLC2|C-REGION| [len=317] (mis=0)
junction support: 1 umis using 11 reads
cdr3 = CQVWDRSRDHVVF at 352, score = 6 + 8
umis assigned: [1]
of which 1 are surviving nonsolos
reads assigned: 87
start codons at 37, 86, 98, 121, 335, 380
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.170 = CTTAACTAGAATTCCC-1

using 243 reads

====================================================================================

graph has 102 edges initially, 2 edges after simplification

total ucounts = 8
nonsolo ucounts = 3[2^2, 234]
surviving nonsolo ucounts = 1[234]
ids = [1]

====================================================================================

UMI info for barcode CTTAACTAGAATTCCC-1 contig 1 = AGTCTCAGTC...
umi AGTCTTCCTT = 220 reads: +388 validated

GOOD CONTIGS

TIG 1[bases=498]
0-20 ==> 3-23 on |252|IGKV1D-39|5'UTR| [len=23] (mis=0)
20-373 ==> 0-353 on |253|IGKV1D-39|L-REGION+V-REGION| [len=353] (mis=1)
370-408 ==> 0-38 on |213|IGKJ1|J-REGION| [len=38] (mis=3)
408-498 ==> 0-90 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 35 reads
cdr3 = CQQSYSTPLTF at 347, score = 9 + 9
umis assigned: [1]
of which 1 are surviving nonsolos
reads assigned: 217
start codons at 20, 26, 82, 95, 231, 450
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.178 = CTTAACTAGCGACGTA-1

using 204 reads

====================================================================================

graph has 56 edges initially, 2 edges after simplification

total ucounts = 5
nonsolo ucounts = 3[2^2, 198]
surviving nonsolo ucounts = 1[198]
ids = [0]

====================================================================================

UMI info for barcode CTTAACTAGCGACGTA-1 contig 1 = ACACCCCTCC...
umi ACGTACACTT = 189 reads: +436 validated

GOOD CONTIGS

TIG 1[bases=567]
0-43 ==> 16-59 on |64|IGHV1-18|5'UTR| [len=59] (mis=1)
43-396 ==> 0-353 on |65|IGHV1-18|L-REGION+V-REGION| [len=353] (mis=22)
445-479 ==> 12-46 on |54|IGHJ4|J-REGION| [len=46] (mis=0)
479-567 ==> 0-88 on |1|IGHA1|C-REGION| [len=1058] (mis=0)
junction support: 1 umis using 16 reads
cdr3 = CARDKHFRDPYYHYSGALDHW at 385, score = 7 + 7
umis assigned: [0]
of which 1 are surviving nonsolos
reads assigned: 186
start codons at 43, 241, 246, 263, 307, 340, 533
confident = false
NOT paired!

▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓

BARCODE 53.190 = CTTAACTAGGTAAACT-1

using 380 reads

====================================================================================

graph has 108 edges initially, 2 edges after simplification

total ucounts = 5
nonsolo ucounts = 2[2, 375]
surviving nonsolo ucounts = 1[375]
ids = [0]

====================================================================================

UMI info for barcode CTTAACTAGGTAAACT-1 contig 1 = GGGAGGAACT...
umi ATCCTGTATT = 374 reads: +379 validated

GOOD CONTIGS

TIG 1[bases=550]
0-35 ==> 62-97 on |280|IGKV3-15|5'UTR| [len=97] (mis=0)
35-380 ==> 0-345 on |281|IGKV3-15|L-REGION+V-REGION| [len=345] (mis=3)
376-414 ==> 0-38 on |213|IGKJ1|J-REGION| [len=38] (mis=0)
414-550 ==> 0-136 on |212|IGKC|C-REGION| [len=320] (mis=0)
junction support: 1 umis using 61 reads
cdr3 = CQQYNNWWTF at 356, score = 9 + 8
umis assigned: [0]
of which 1 are surviving nonsolos
reads assigned: 367
start codons at 35, 104, 240, 456
confident = false
NOT paired!
sorting bam, mem = 0.05
running samtools sort -l 8G -o /scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk053-ucc6a7a72ce/files/contig_bam_sorted.bam /scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk053-ucc6a7a72ce/files/contig_bam.bam

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8.365 seconds used processing barcodes, peak mem = 0.23
