@include "rna/_cr_vdj_stages.mro"

call COPY_VDJ_REFERENCE(
    vdj_reference_path = "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
    vdj_t_donor_ref_fa = "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/donor_ref.fa",
    vdj_b_donor_ref_fa = "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/donor_ref.fa",
)
