[
    {
        "name": "SC_MULTI_CS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "config",
                            "type": "FileOrBytes",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "bytes": null,
                                "file": "/scratch/etanis/ST-118/multi/220510_multi-config-template_2.csv"
                            },
                            "waiting": false
                        },
                        {
                            "id": "config_hash",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "441f739f093e36c43f57328492fe5aa9703c212f8c5a330ff0ef60c31a5f08c4",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "config",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG/fork0/chnk0-ucc6a7a7197/files/config.csv",
                            "waiting": false
                        },
                        {
                            "id": "vdj_reference",
                            "type": "VdjRefFolder",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "fasta": {
                                    "donor_regions": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COPY_VDJ_REFERENCE/fork0/chnk0-ucc6a7a7cd7/files/donor_regions.fa",
                                    "regions": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COPY_VDJ_REFERENCE/fork0/chnk0-ucc6a7a7cd7/files/regions.fa"
                                },
                                "reference": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COPY_VDJ_REFERENCE/fork0/chnk0-ucc6a7a7cd7/files/reference.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "multi",
                            "type": "MultiOutputsCS",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "count": {
                                    "feature_reference_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/feature_reference.csv",
                                    "raw_cloupe": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/CHOOSE_CLOUPE/fork0/chnk0-ucc6a7a7dbf/files/cloupe.cloupe",
                                    "raw_feature_bc_matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0-ucc6a7a7c4d/files/raw_feature_bc_matrix.h5",
                                    "raw_feature_bc_matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_MATRIX_MARKET/fork0/chnk0-ucc6a7a7c4d/files/raw_feature_bc_matrix",
                                    "raw_molecule_info_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ccd/files/molecule_info_non_multiplexed.h5",
                                    "unassigned_alignments": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_unassigned.bam",
                                    "unassigned_alignments_index": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_unassigned.bam.bai"
                                },
                                "multiplexing_analysis": {
                                    "assignment_confidence_table": null,
                                    "cells_per_tag": null,
                                    "tag_calls_per_cell": null,
                                    "tag_calls_summary": null
                                },
                                "vdj_b": {
                                    "all_contig_annotations_bed": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/annotations_bed.bed",
                                    "all_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd8/files/all_contig_annotations.csv",
                                    "all_contig_annotations_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd8/files/all_contig_annotations.json",
                                    "all_contig_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_bam.bam",
                                    "all_contig_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_bam.bam.bai",
                                    "all_contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fasta.fasta",
                                    "all_contig_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fasta.fasta.fai",
                                    "all_contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fastq.fastq"
                                },
                                "vdj_t": {
                                    "all_contig_annotations_bed": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/annotations_bed.bed",
                                    "all_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.csv",
                                    "all_contig_annotations_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.json",
                                    "all_contig_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_bam.bam",
                                    "all_contig_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_bam.bam.bai",
                                    "all_contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fasta.fasta",
                                    "all_contig_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fasta.fasta.fai",
                                    "all_contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fastq.fastq"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "per_sample_outs",
                            "type": "map\u003cSampleOutputsCS\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": {
                                    "count": {
                                        "analysis": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SANITIZE_MAP_CALLS/fork0/chnk0-ucc6a7a7dbf/files/dimitri-multi_analysis_csv",
                                        "antibody_analysis": null,
                                        "cloupe": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SANITIZE_MAP_CALLS/fork0/chnk0-ucc6a7a7dbf/files/dimitri-multi_output_for_cloupe.cloupe",
                                        "crispr_analysis": null,
                                        "feature_reference_csv": null,
                                        "sample_alignments": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_dimitri-multi.bam",
                                        "sample_alignments_index": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_dimitri-multi.bam.bai",
                                        "sample_barcodes_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_barcodes.csv",
                                        "sample_feature_bc_matrix": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                                        "sample_feature_bc_matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix",
                                        "sample_molecule_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/molecule_info_dimitri-multi.h5",
                                        "target_panel": null
                                    },
                                    "metrics_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_WEB_SUMMARY/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_metrics_summary.csv",
                                    "vdj_b": {
                                        "airr_rearrangement": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0-ucc6a7a7ce7/files/airr_annotations.tsv",
                                        "cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/cell_barcodes.json",
                                        "clonotypes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd7/files/clonotypes.csv",
                                        "concat_ref_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.bam",
                                        "concat_ref_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.bam.bai",
                                        "concat_ref_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta",
                                        "concat_ref_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta.fai",
                                        "consensus_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus_annotations.csv",
                                        "consensus_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd8/files/consensus.bam",
                                        "consensus_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd8/files/consensus.bam.bai",
                                        "consensus_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus.fasta",
                                        "consensus_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus.fasta.fai",
                                        "filtered_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_annotations.csv",
                                        "filtered_contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_fasta.fasta",
                                        "filtered_contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_fastq.fastq",
                                        "vdj_contig_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_PROTO/fork0/chnk0-ucc6a7a7cea/files/vdj_contig_info.pb",
                                        "vloupe": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/VLOUPE_PREPROCESS/fork0/chnk0-ucc6a7a7cd7/files/output_for_vloupe.vloupe"
                                    },
                                    "vdj_t": {
                                        "airr_rearrangement": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0-ucc6a7a7cdd/files/airr_annotations.tsv",
                                        "cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/cell_barcodes.json",
                                        "clonotypes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd5/files/clonotypes.csv",
                                        "concat_ref_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.bam",
                                        "concat_ref_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.bam.bai",
                                        "concat_ref_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.fasta",
                                        "concat_ref_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.fasta.fai",
                                        "consensus_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus_annotations.csv",
                                        "consensus_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd7/files/consensus.bam",
                                        "consensus_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd7/files/consensus.bam.bai",
                                        "consensus_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus.fasta",
                                        "consensus_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus.fasta.fai",
                                        "filtered_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_annotations.csv",
                                        "filtered_contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_fasta.fasta",
                                        "filtered_contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_fastq.fastq",
                                        "vdj_contig_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_PROTO/fork0/chnk0-ucc6a7a7ce7/files/vdj_contig_info.pb",
                                        "vloupe": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/VLOUPE_PREPROCESS/fork0/chnk0-ucc6a7a7cd5/files/output_for_vloupe.vloupe"
                                    },
                                    "web_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_WEB_SUMMARY/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_web_summary.html"
                                }
                            },
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.BUILD_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.BUILD_VDJ_OUTPUTS_CS",
                "to": "ID.dimitri-multi.SC_MULTI_CS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE",
                "to": "ID.dimitri-multi.SC_MULTI_CS"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "BUILD_SAMPLE_OUTS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.BUILD_SAMPLE_OUTS",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/BUILD_SAMPLE_OUTS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/BUILD_SAMPLE_OUTS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/BUILD_SAMPLE_OUTS/fork_dimitri-multi",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/BUILD_SAMPLE_OUTS/fork_dimitri-multi/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/BUILD_SAMPLE_OUTS/fork_dimitri-multi/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_slfe_outs",
                            "type": "SampleSlfeOuts",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": {
                                "feature_reference": null,
                                "target_panel": null,
                                "sample": "dimitri-multi",
                                "bam_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_dimitri-multi.bam",
                                "bam_index_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_dimitri-multi.bam.bai",
                                "molecule_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/molecule_info_dimitri-multi.h5",
                                "matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                                "all_genes_matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix.h5",
                                "filtered_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_barcodes.csv",
                                "matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix",
                                "all_genes_matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix",
                                "metrics_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_summary.json",
                                "per_barcode_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_per_barcode_metrics.csv"
                            },
                            "waiting": false
                        },
                        {
                            "id": "crispr_analysis",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SANITIZE_MAP_CALLS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "antibody_analysis",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SANITIZE_MAP_CALLS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "rna_analysis",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SANITIZE_MAP_CALLS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SANITIZE_MAP_CALLS/fork0/chnk0-ucc6a7a7dbf/files/dimitri-multi_analysis_csv",
                            "waiting": false
                        },
                        {
                            "id": "cloupe",
                            "type": "cloupe",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SANITIZE_MAP_CALLS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SANITIZE_MAP_CALLS/fork0/chnk0-ucc6a7a7dbf/files/dimitri-multi_output_for_cloupe.cloupe",
                            "waiting": false
                        },
                        {
                            "id": "web_summary",
                            "type": "html",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_WEB_SUMMARY/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_web_summary.html",
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary_csv",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_WEB_SUMMARY/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_metrics_summary.csv",
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_outs",
                            "type": "VdjOutputsCS",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "airr_rearrangement": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0-ucc6a7a7ce7/files/airr_annotations.tsv",
                                "all_contig_annotations_bed": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/annotations_bed.bed",
                                "all_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd8/files/all_contig_annotations.csv",
                                "all_contig_annotations_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd8/files/all_contig_annotations.json",
                                "all_contig_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_bam.bam",
                                "all_contig_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_bam.bam.bai",
                                "all_contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fasta.fasta",
                                "all_contig_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fasta.fasta.fai",
                                "all_contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fastq.fastq",
                                "cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/cell_barcodes.json",
                                "clonotypes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd7/files/clonotypes.csv",
                                "concat_ref_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.bam",
                                "concat_ref_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.bam.bai",
                                "concat_ref_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta",
                                "concat_ref_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta.fai",
                                "consensus_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus_annotations.csv",
                                "consensus_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd8/files/consensus.bam",
                                "consensus_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd8/files/consensus.bam.bai",
                                "consensus_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus.fasta",
                                "consensus_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus.fasta.fai",
                                "filtered_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_annotations.csv",
                                "filtered_contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_fasta.fasta",
                                "filtered_contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_fastq.fastq",
                                "metrics_summary_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/metrics_summary_csv.csv",
                                "vdj_contig_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_PROTO/fork0/chnk0-ucc6a7a7cea/files/vdj_contig_info.pb",
                                "vloupe": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/VLOUPE_PREPROCESS/fork0/chnk0-ucc6a7a7cd7/files/output_for_vloupe.vloupe"
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_t_outs",
                            "type": "VdjOutputsCS",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "airr_rearrangement": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0-ucc6a7a7cdd/files/airr_annotations.tsv",
                                "all_contig_annotations_bed": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/annotations_bed.bed",
                                "all_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.csv",
                                "all_contig_annotations_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.json",
                                "all_contig_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_bam.bam",
                                "all_contig_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_bam.bam.bai",
                                "all_contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fasta.fasta",
                                "all_contig_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fasta.fasta.fai",
                                "all_contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fastq.fastq",
                                "cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/cell_barcodes.json",
                                "clonotypes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd5/files/clonotypes.csv",
                                "concat_ref_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.bam",
                                "concat_ref_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.bam.bai",
                                "concat_ref_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.fasta",
                                "concat_ref_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.fasta.fai",
                                "consensus_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus_annotations.csv",
                                "consensus_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd7/files/consensus.bam",
                                "consensus_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd7/files/consensus.bam.bai",
                                "consensus_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus.fasta",
                                "consensus_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus.fasta.fai",
                                "filtered_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_annotations.csv",
                                "filtered_contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_fasta.fasta",
                                "filtered_contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_fastq.fastq",
                                "metrics_summary_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/metrics_summary_csv.csv",
                                "vdj_contig_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_PROTO/fork0/chnk0-ucc6a7a7ce7/files/vdj_contig_info.pb",
                                "vloupe": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/VLOUPE_PREPROCESS/fork0/chnk0-ucc6a7a7cd5/files/output_for_vloupe.vloupe"
                            },
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "sample_outs",
                            "type": "SampleOutputsCS",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "count": {
                                    "analysis": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SANITIZE_MAP_CALLS/fork0/chnk0-ucc6a7a7dbf/files/dimitri-multi_analysis_csv",
                                    "antibody_analysis": null,
                                    "cloupe": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SANITIZE_MAP_CALLS/fork0/chnk0-ucc6a7a7dbf/files/dimitri-multi_output_for_cloupe.cloupe",
                                    "crispr_analysis": null,
                                    "feature_reference_csv": null,
                                    "sample_alignments": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_dimitri-multi.bam",
                                    "sample_alignments_index": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_dimitri-multi.bam.bai",
                                    "sample_barcodes_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_barcodes.csv",
                                    "sample_feature_bc_matrix": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                                    "sample_feature_bc_matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix",
                                    "sample_molecule_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/molecule_info_dimitri-multi.h5",
                                    "target_panel": null
                                },
                                "metrics_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_WEB_SUMMARY/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_metrics_summary.csv",
                                "vdj_b": {
                                    "airr_rearrangement": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0-ucc6a7a7ce7/files/airr_annotations.tsv",
                                    "cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/cell_barcodes.json",
                                    "clonotypes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd7/files/clonotypes.csv",
                                    "concat_ref_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.bam",
                                    "concat_ref_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.bam.bai",
                                    "concat_ref_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta",
                                    "concat_ref_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta.fai",
                                    "consensus_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus_annotations.csv",
                                    "consensus_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd8/files/consensus.bam",
                                    "consensus_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd8/files/consensus.bam.bai",
                                    "consensus_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus.fasta",
                                    "consensus_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus.fasta.fai",
                                    "filtered_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_annotations.csv",
                                    "filtered_contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_fasta.fasta",
                                    "filtered_contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_fastq.fastq",
                                    "vdj_contig_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_PROTO/fork0/chnk0-ucc6a7a7cea/files/vdj_contig_info.pb",
                                    "vloupe": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/VLOUPE_PREPROCESS/fork0/chnk0-ucc6a7a7cd7/files/output_for_vloupe.vloupe"
                                },
                                "vdj_t": {
                                    "airr_rearrangement": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0-ucc6a7a7cdd/files/airr_annotations.tsv",
                                    "cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/cell_barcodes.json",
                                    "clonotypes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd5/files/clonotypes.csv",
                                    "concat_ref_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.bam",
                                    "concat_ref_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.bam.bai",
                                    "concat_ref_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.fasta",
                                    "concat_ref_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.fasta.fai",
                                    "consensus_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus_annotations.csv",
                                    "consensus_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd7/files/consensus.bam",
                                    "consensus_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd7/files/consensus.bam.bai",
                                    "consensus_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus.fasta",
                                    "consensus_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus.fasta.fai",
                                    "filtered_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_annotations.csv",
                                    "filtered_contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_fasta.fasta",
                                    "filtered_contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_fastq.fastq",
                                    "vdj_contig_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_PROTO/fork0/chnk0-ucc6a7a7ce7/files/vdj_contig_info.pb",
                                    "vloupe": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/VLOUPE_PREPROCESS/fork0/chnk0-ucc6a7a7cd5/files/output_for_vloupe.vloupe"
                                },
                                "web_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_WEB_SUMMARY/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_web_summary.html"
                            },
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.BUILD_VDJ_OUTPUTS_CS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.BUILD_SAMPLE_OUTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SANITIZE_MAP_CALLS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.BUILD_SAMPLE_OUTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.BUILD_SAMPLE_OUTS"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "BUILD_VDJ_OUTPUTS_CS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.BUILD_VDJ_OUTPUTS_CS",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/BUILD_VDJ_OUTPUTS_CS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/BUILD_VDJ_OUTPUTS_CS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/BUILD_VDJ_OUTPUTS_CS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/BUILD_VDJ_OUTPUTS_CS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/BUILD_VDJ_OUTPUTS_CS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "multi_core",
                            "type": "SC_MULTI_CORE",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "count_analyzer": {
                                    "antibody_analyzer": null,
                                    "crispr_analyzer": null,
                                    "rna_analyzer": null,
                                    "targeted_analyzer": null
                                },
                                "detect_count_chem": {
                                    "chemistry_type": "SC5P-R2",
                                    "is_antibody_only": false
                                },
                                "disable_feat": {
                                    "disable_antibody": true,
                                    "disable_crispr": true,
                                    "disable_legacy_stages": true,
                                    "disable_library_cloupe": true,
                                    "disable_multiplexing": true,
                                    "disable_targeted": true
                                },
                                "full_config": {
                                    "disable_count": false,
                                    "disable_multi": false,
                                    "disable_multi_count": false,
                                    "disable_vdj_b": false,
                                    "disable_vdj_t": false,
                                    "has_no_vdj_ref": false
                                },
                                "multi_gw": {
                                    "count": {
                                        "basic_counter_outs": {
                                            "aggregate_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/aggregate_barcodes.csv",
                                            "alignments": [
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/pos_sorted.asf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/pos_sorted.asf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/pos_sorted.asf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/pos_sorted.asf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/pos_sorted.asf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/pos_sorted.asf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/pos_sorted.asf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/pos_sorted.asf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/pos_sorted.asf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/pos_sorted.asf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/pos_sorted.asf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/pos_sorted.asf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/pos_sorted.asf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/pos_sorted.asf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/pos_sorted.asf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/pos_sorted.asf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/pos_sorted.asf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/pos_sorted.asf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/pos_sorted.asf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/pos_sorted.asf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/pos_sorted.asf"
                                            ],
                                            "annotation_files": null,
                                            "assign_tags": {
                                                "assignment_confidence_table": null,
                                                "cells_per_tag": null,
                                                "gem_well_inferred_throughputs": null,
                                                "gem_well_throughput": null,
                                                "jibes_model_summary": null,
                                                "jibes_parameters": null,
                                                "jibes_summary_data": null,
                                                "marginal_tag_frequencies": null,
                                                "non_tag_assignments": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/CALL_TAGS_JIBES/fork0/join-ucc6a7a7cdb/files/non_tag_assignments.json",
                                                "sample_assignment_metrics": {
                                                    "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/dimitri-multi_summary.json"
                                                },
                                                "sample_barcodes_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/sample_barcodes.json",
                                                "tag_assigner_pickle": null,
                                                "tag_call_metrics_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/MERGE_METRICS/fork0/chnk0-ucc6a7a7ce0/files/summary.json",
                                                "tag_calls_per_cell": null,
                                                "tag_calls_summary": null,
                                                "tag_contaminant_info": null,
                                                "tag_umi_thresholds_csv": null,
                                                "tag_umi_thresholds_json": null
                                            },
                                            "bam_header": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/join-ucc6a7a77c8/files/bam_header",
                                            "barcode_correction_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/join-ucc6a7a77c8/files/barcode_summary.csv",
                                            "barcode_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0/chnk0-ucc6a7a7c4d/files/barcode_summary.h5",
                                            "barcode_whitelist": "737K-august-2016",
                                            "bc_umi_info": [
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/bc_umi_info.bui",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/bc_umi_info.bui",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/bc_umi_info.bui",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/bc_umi_info.bui",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/bc_umi_info.bui",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/bc_umi_info.bui",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/bc_umi_info.bui",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/bc_umi_info.bui",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/bc_umi_info.bui",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/bc_umi_info.bui",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/bc_umi_info.bui",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/bc_umi_info.bui",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/bc_umi_info.bui",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/bc_umi_info.bui",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/bc_umi_info.bui",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/bc_umi_info.bui",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/bc_umi_info.bui",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/bc_umi_info.bui",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/bc_umi_info.bui",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/bc_umi_info.bui",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/bc_umi_info.bui"
                                            ],
                                            "filtered_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                                            "filtered_gene_bc_matrices_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                                            "filtered_gene_bc_matrices_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_mex",
                                            "gem_groups": [
                                                1
                                            ],
                                            "gem_well_alignment_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS/fork0/chnk0-ucc6a7a7c4d/files/summary.json",
                                            "merged_subsampling_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUBSAMPLE_READS/fork0/join-ucc6a7a7cd4/files/merged_metrics.pickle",
                                            "molecule_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ccd/files/molecule_info_non_multiplexed.h5",
                                            "multi_matrices": [
                                                {
                                                    "sample": "dimitri-multi",
                                                    "matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                                                    "matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_feature_barcode_matrix",
                                                    "all_genes_matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix.h5",
                                                    "all_genes_matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix",
                                                    "filtered_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_barcodes.csv"
                                                }
                                            ],
                                            "multi_metrics": [
                                                {
                                                    "per_barcode_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS/fork0/chnk0-ucc6a7a7cde/files/per_barcode_metrics.csv",
                                                    "per_lib_type_metrics": {},
                                                    "sample": "dimitri-multi",
                                                    "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS/fork0/chnk0-ucc6a7a7cde/files/summary.json"
                                                }
                                            ],
                                            "multi_molecule_info": [
                                                {
                                                    "h5_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ce2/files/molecule_info_dimitri-multi.h5",
                                                    "sample": "dimitri-multi",
                                                    "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ce2/files/dimitri-multi_summary.json"
                                                }
                                            ],
                                            "multi_pos_sorted_bam": [
                                                {
                                                    "bam_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_dimitri-multi.bam",
                                                    "bam_index_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_dimitri-multi.bam.bai",
                                                    "sample": "dimitri-multi"
                                                },
                                                {
                                                    "bam_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_unassigned.bam",
                                                    "bam_index_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_unassigned.bam.bai",
                                                    "sample": "unassigned"
                                                }
                                            ],
                                            "nonambient_cell_calls": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/nonambient_calls.csv",
                                            "per_barcode_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS/fork0/chnk0-ucc6a7a7c4d/files/per_barcode_metrics.csv",
                                            "per_barcode_metrics_shard": [
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/metrics_shard.bmsf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/metrics_shard.bmsf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/metrics_shard.bmsf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/metrics_shard.bmsf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/metrics_shard.bmsf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/metrics_shard.bmsf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/metrics_shard.bmsf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/metrics_shard.bmsf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/metrics_shard.bmsf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/metrics_shard.bmsf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/metrics_shard.bmsf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/metrics_shard.bmsf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/metrics_shard.bmsf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/metrics_shard.bmsf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/metrics_shard.bmsf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/metrics_shard.bmsf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/metrics_shard.bmsf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/metrics_shard.bmsf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/metrics_shard.bmsf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/metrics_shard.bmsf",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/metrics_shard.bmsf"
                                            ],
                                            "possorted_genome_bam": null,
                                            "possorted_genome_bam_index": null,
                                            "raw_gene_bc_matrices_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0-ucc6a7a7c4d/files/raw_feature_bc_matrix.h5",
                                            "raw_gene_bc_matrices_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_MATRIX_MARKET/fork0/chnk0-ucc6a7a7c4d/files/raw_feature_bc_matrix",
                                            "read_chunks": [
                                                {
                                                    "chemistry": {
                                                        "barcode": [
                                                            {
                                                                "kind": "gel_bead",
                                                                "length": 16,
                                                                "offset": 0,
                                                                "read_type": "R1",
                                                                "whitelist": "737K-august-2016"
                                                            }
                                                        ],
                                                        "description": "Single Cell 5' R2-only",
                                                        "endedness": "five_prime",
                                                        "name": "SC5P-R2",
                                                        "rna": {
                                                            "length": null,
                                                            "min_length": null,
                                                            "offset": 0,
                                                            "read_type": "R2"
                                                        },
                                                        "rna2": null,
                                                        "strandedness": "-",
                                                        "umi": {
                                                            "length": 10,
                                                            "min_length": null,
                                                            "offset": 16,
                                                            "read_type": "R1"
                                                        }
                                                    },
                                                    "chunk_id": 0,
                                                    "fastq_id": "dimitri_RNA",
                                                    "fastqs": {
                                                        "i1": null,
                                                        "i2": null,
                                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                                        "r1_interleaved": false,
                                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                                    },
                                                    "gem_group": 1,
                                                    "library_id": 0,
                                                    "library_type": "Gene Expression",
                                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                                    "read_lengths": {},
                                                    "subsample_rate": null
                                                }
                                            ],
                                            "read_shards": {
                                                "corrected_reads": [
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/valid_shard.shard"
                                                ],
                                                "invalid_reads": [
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/invalid_shard.shard"
                                                ],
                                                "valid_reads": [
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c6/files/valid.shard"
                                                ]
                                            },
                                            "sample_assignment_metrics": {
                                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/dimitri-multi_summary.json"
                                            },
                                            "sample_barcodes_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/sample_barcodes.json",
                                            "sequencing_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                                            "slfe_feature_reference": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/split-ucc6a7a71c0/files/feature_reference.frf.bincode",
                                            "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MERGE_METRICS/fork0/chnk0-ucc6a7a7d61/files/summary.json",
                                            "target_set_name": null
                                        },
                                        "setup_chunks_outs": {
                                            "barcode_whitelist": "737K-august-2016",
                                            "chemistry_def": {
                                                "barcode": [
                                                    {
                                                        "kind": "gel_bead",
                                                        "length": 16,
                                                        "offset": 0,
                                                        "read_type": "R1",
                                                        "whitelist": "737K-august-2016"
                                                    }
                                                ],
                                                "description": "Single Cell 5' R2-only",
                                                "endedness": "five_prime",
                                                "name": "SC5P-R2",
                                                "rna": {
                                                    "length": null,
                                                    "min_length": null,
                                                    "offset": 0,
                                                    "read_type": "R2"
                                                },
                                                "rna2": null,
                                                "strandedness": "-",
                                                "umi": {
                                                    "length": 10,
                                                    "min_length": null,
                                                    "offset": 16,
                                                    "read_type": "R1"
                                                }
                                            },
                                            "chunks": [
                                                {
                                                    "chemistry": {
                                                        "barcode": [
                                                            {
                                                                "kind": "gel_bead",
                                                                "length": 16,
                                                                "offset": 0,
                                                                "read_type": "R1",
                                                                "whitelist": "737K-august-2016"
                                                            }
                                                        ],
                                                        "description": "Single Cell 5' R2-only",
                                                        "endedness": "five_prime",
                                                        "name": "SC5P-R2",
                                                        "rna": {
                                                            "length": null,
                                                            "min_length": null,
                                                            "offset": 0,
                                                            "read_type": "R2"
                                                        },
                                                        "rna2": null,
                                                        "strandedness": "-",
                                                        "umi": {
                                                            "length": 10,
                                                            "min_length": null,
                                                            "offset": 16,
                                                            "read_type": "R1"
                                                        }
                                                    },
                                                    "chunk_id": 0,
                                                    "fastq_id": "dimitri_RNA",
                                                    "fastqs": {
                                                        "i1": null,
                                                        "i2": null,
                                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                                        "r1_interleaved": false,
                                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                                    },
                                                    "gem_group": 1,
                                                    "library_id": 0,
                                                    "library_type": "Gene Expression",
                                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                                    "read_lengths": {},
                                                    "subsample_rate": null
                                                }
                                            ]
                                        },
                                        "target_outs": {
                                            "bait_fasta": null,
                                            "disable_target_umi_filter": true,
                                            "disable_targeted": true,
                                            "probe_set": null,
                                            "rps_limit": null,
                                            "summary": null,
                                            "target_gene_indices": null,
                                            "target_panel": null,
                                            "target_panel_or_probe_set": null,
                                            "target_set_name": null,
                                            "targeting_method": null
                                        }
                                    },
                                    "vdj_b": {
                                        "assembler_outs": {
                                            "assemblable_reads_per_bc": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/assemblable_reads_per_bc.arp.bincode",
                                            "barcode_support": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/barcode_support.csv",
                                            "barcodes_in_chunks": [
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk000-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk001-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk002-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk003-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk004-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk005-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk006-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk007-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk008-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk009-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk010-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk011-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk012-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk013-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk014-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk015-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk016-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk017-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk018-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk019-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk020-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk021-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk022-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk023-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk024-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk025-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk026-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk027-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk028-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk029-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk030-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk031-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk032-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk033-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk034-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk035-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk036-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk037-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk038-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk039-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk040-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk041-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk042-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk043-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk044-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk045-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk046-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk047-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk048-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk049-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk050-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk051-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk052-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk053-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk054-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk055-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk056-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk057-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk058-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk059-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk060-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk061-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk062-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk063-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk064-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk065-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk066-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk067-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk068-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk069-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk070-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk071-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk072-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk073-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk074-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk075-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk076-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk077-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk078-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk079-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk080-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk081-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk082-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk083-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk084-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk085-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk086-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk087-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk088-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk089-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk090-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk091-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk092-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk093-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk094-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk095-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk096-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk097-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk098-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk099-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk100-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk101-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk102-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk103-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk104-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk105-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk106-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk107-ucc6a7a72ce/files/barcodes_in_chunk.json"
                                            ],
                                            "contig_annotations": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                                            "contig_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_bam.bam",
                                            "contig_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_bam.bam.bai",
                                            "corrected_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72b0/files/corrected_barcode_counts.json",
                                            "gem_groups": [
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1
                                            ],
                                            "n50_n50_rpu": 288,
                                            "processed_read_pairs": 20716612,
                                            "raw_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72b0/files/raw_barcode_counts.json",
                                            "read_shards": {
                                                "corrected_reads": [
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                                                ],
                                                "invalid_reads": [
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/invalid_shard.shard"
                                                ],
                                                "valid_reads": [
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard"
                                                ]
                                            },
                                            "report": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/report.txt",
                                            "sequencing_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                                            "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/chnk0-ucc6a7a73e1/files/summary.json",
                                            "summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/summary_tsv.tsv",
                                            "total_read_pairs": 56633794,
                                            "umi_summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/umi_summary_tsv.tsv",
                                            "unmapped_sample_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/unmapped_sample_fastq.fastq"
                                        },
                                        "setup_chunks_outs": {
                                            "barcode_whitelist": "737K-august-2016",
                                            "chemistry_def": {
                                                "barcode": [
                                                    {
                                                        "kind": "gel_bead",
                                                        "length": 16,
                                                        "offset": 0,
                                                        "read_type": "R1",
                                                        "whitelist": "737K-august-2016"
                                                    }
                                                ],
                                                "description": "Single Cell V(D)J R2-only",
                                                "endedness": "five_prime",
                                                "name": "SCVDJ-R2",
                                                "rna": {
                                                    "length": null,
                                                    "min_length": null,
                                                    "offset": 0,
                                                    "read_type": "R2"
                                                },
                                                "rna2": null,
                                                "strandedness": "-",
                                                "umi": {
                                                    "length": 10,
                                                    "min_length": null,
                                                    "offset": 16,
                                                    "read_type": "R1"
                                                }
                                            },
                                            "chunks": [
                                                {
                                                    "chemistry": {
                                                        "barcode": [
                                                            {
                                                                "kind": "gel_bead",
                                                                "length": 16,
                                                                "offset": 0,
                                                                "read_type": "R1",
                                                                "whitelist": "737K-august-2016"
                                                            }
                                                        ],
                                                        "description": "Single Cell V(D)J R2-only",
                                                        "endedness": "five_prime",
                                                        "name": "SCVDJ-R2",
                                                        "rna": {
                                                            "length": null,
                                                            "min_length": null,
                                                            "offset": 0,
                                                            "read_type": "R2"
                                                        },
                                                        "rna2": null,
                                                        "strandedness": "-",
                                                        "umi": {
                                                            "length": 10,
                                                            "min_length": null,
                                                            "offset": 16,
                                                            "read_type": "R1"
                                                        }
                                                    },
                                                    "chunk_id": 0,
                                                    "fastq_id": "dimitri_BCR",
                                                    "fastqs": {
                                                        "i1": null,
                                                        "i2": null,
                                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_BCR_S1_L001_R1_001.fastq.gz",
                                                        "r1_interleaved": false,
                                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_BCR_S1_L001_R2_001.fastq.gz"
                                                    },
                                                    "gem_group": 1,
                                                    "library_id": 0,
                                                    "library_type": "VDJ",
                                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                                    "read_lengths": {},
                                                    "subsample_rate": null
                                                }
                                            ]
                                        }
                                    },
                                    "vdj_t": {
                                        "assembler_outs": {
                                            "assemblable_reads_per_bc": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/assemblable_reads_per_bc.arp.bincode",
                                            "barcode_support": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/barcode_support.csv",
                                            "barcodes_in_chunks": [
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk00-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk01-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk02-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk03-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk04-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk05-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk06-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk07-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk08-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk09-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk10-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk11-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk12-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk13-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk14-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk15-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk16-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk17-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk18-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk19-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk20-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk21-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk22-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk23-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk24-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk25-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk26-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk27-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk28-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk29-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk30-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk31-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk32-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk33-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk34-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk35-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk36-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk37-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk38-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk39-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk40-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk41-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk42-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk43-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk44-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk45-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk46-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk47-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk48-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk49-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk50-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk51-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk52-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk53-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk54-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk55-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk56-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk57-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk58-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk59-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk60-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk61-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk62-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk63-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk64-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk65-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk66-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk67-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk68-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk69-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk70-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk71-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk72-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk73-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk74-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk75-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk76-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk77-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk78-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk79-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk80-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk81-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk82-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk83-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk84-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk85-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk86-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk87-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk88-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk89-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk90-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk91-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk92-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk93-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk94-ucc6a7a72e6/files/barcodes_in_chunk.json"
                                            ],
                                            "contig_annotations": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                                            "contig_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_bam.bam",
                                            "contig_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_bam.bam.bai",
                                            "corrected_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72c2/files/corrected_barcode_counts.json",
                                            "gem_groups": [
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1,
                                                1
                                            ],
                                            "n50_n50_rpu": 2159,
                                            "processed_read_pairs": 46574590,
                                            "raw_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72c2/files/raw_barcode_counts.json",
                                            "read_shards": {
                                                "corrected_reads": [
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                                                ],
                                                "invalid_reads": [
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/invalid_shard.shard",
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/invalid_shard.shard"
                                                ],
                                                "valid_reads": [
                                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard"
                                                ]
                                            },
                                            "report": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/report.txt",
                                            "sequencing_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                                            "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/chnk0-ucc6a7a7409/files/summary.json",
                                            "summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/summary_tsv.tsv",
                                            "total_read_pairs": 58185432,
                                            "umi_summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/umi_summary_tsv.tsv",
                                            "unmapped_sample_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/unmapped_sample_fastq.fastq"
                                        },
                                        "setup_chunks_outs": {
                                            "barcode_whitelist": "737K-august-2016",
                                            "chemistry_def": {
                                                "barcode": [
                                                    {
                                                        "kind": "gel_bead",
                                                        "length": 16,
                                                        "offset": 0,
                                                        "read_type": "R1",
                                                        "whitelist": "737K-august-2016"
                                                    }
                                                ],
                                                "description": "Single Cell V(D)J R2-only",
                                                "endedness": "five_prime",
                                                "name": "SCVDJ-R2",
                                                "rna": {
                                                    "length": null,
                                                    "min_length": null,
                                                    "offset": 0,
                                                    "read_type": "R2"
                                                },
                                                "rna2": null,
                                                "strandedness": "-",
                                                "umi": {
                                                    "length": 10,
                                                    "min_length": null,
                                                    "offset": 16,
                                                    "read_type": "R1"
                                                }
                                            },
                                            "chunks": [
                                                {
                                                    "chemistry": {
                                                        "barcode": [
                                                            {
                                                                "kind": "gel_bead",
                                                                "length": 16,
                                                                "offset": 0,
                                                                "read_type": "R1",
                                                                "whitelist": "737K-august-2016"
                                                            }
                                                        ],
                                                        "description": "Single Cell V(D)J R2-only",
                                                        "endedness": "five_prime",
                                                        "name": "SCVDJ-R2",
                                                        "rna": {
                                                            "length": null,
                                                            "min_length": null,
                                                            "offset": 0,
                                                            "read_type": "R2"
                                                        },
                                                        "rna2": null,
                                                        "strandedness": "-",
                                                        "umi": {
                                                            "length": 10,
                                                            "min_length": null,
                                                            "offset": 16,
                                                            "read_type": "R1"
                                                        }
                                                    },
                                                    "chunk_id": 0,
                                                    "fastq_id": "dimitri_TCR",
                                                    "fastqs": {
                                                        "i1": null,
                                                        "i2": null,
                                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_TCR_S1_L001_R1_001.fastq.gz",
                                                        "r1_interleaved": false,
                                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_TCR_S1_L001_R2_001.fastq.gz"
                                                    },
                                                    "gem_group": 1,
                                                    "library_id": 0,
                                                    "library_type": "VDJ",
                                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                                    "read_lengths": {},
                                                    "subsample_rate": null
                                                }
                                            ]
                                        }
                                    }
                                },
                                "multi_metrics_csvs": {
                                    "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_WEB_SUMMARY/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_metrics_summary.csv"
                                },
                                "multi_reporter": {
                                    "antibody_histograms": null,
                                    "barcode_rank_plots": {
                                        "Gene Expression": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/GENERATE_LIBRARY_PLOTS/fork0/chnk0-ucc6a7a7d79/files/Gene Expression_barcode_rank_plot.json"
                                    },
                                    "cloupe": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/CHOOSE_CLOUPE/fork0/chnk0-ucc6a7a7dbf/files/cloupe.cloupe",
                                    "cmo_tsne_plot": null,
                                    "count_summary": {
                                        "feature_reference": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/feature_reference.csv",
                                        "metrics_summary_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/metrics_summary_csv.csv",
                                        "metrics_summary_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/metrics_summary_json.json",
                                        "web_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/web_summary.html",
                                        "ws_data": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/ws_data.json"
                                    },
                                    "jibes_biplot_histogram": null,
                                    "vdj_b_report": {
                                        "annotations_bed": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/annotations_bed.bed",
                                        "cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/cell_barcodes.json",
                                        "contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fasta.fasta",
                                        "contig_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fasta.fasta.fai",
                                        "contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fastq.fastq",
                                        "filtered_contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_fasta.fasta",
                                        "filtered_contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_fastq.fastq",
                                        "metrics_summary_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/metrics_summary_csv.csv",
                                        "metrics_summary_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/metrics_summary_json.json",
                                        "productive_cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/paired_cell_barcodes.json",
                                        "receptor": "IG",
                                        "vdj_contig_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_PROTO/fork0/chnk0-ucc6a7a7cea/files/vdj_contig_info.pb",
                                        "vloupe": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/VLOUPE_PREPROCESS/fork0/chnk0-ucc6a7a7cd7/files/output_for_vloupe.vloupe",
                                        "web_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/web_summary.html",
                                        "web_summary_data": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/web_summary_data.json"
                                    },
                                    "vdj_t_report": {
                                        "annotations_bed": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/annotations_bed.bed",
                                        "cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/cell_barcodes.json",
                                        "contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fasta.fasta",
                                        "contig_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fasta.fasta.fai",
                                        "contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fastq.fastq",
                                        "filtered_contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_fasta.fasta",
                                        "filtered_contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_fastq.fastq",
                                        "metrics_summary_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/metrics_summary_csv.csv",
                                        "metrics_summary_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/metrics_summary_json.json",
                                        "productive_cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/paired_cell_barcodes.json",
                                        "receptor": "TR",
                                        "vdj_contig_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_PROTO/fork0/chnk0-ucc6a7a7ce7/files/vdj_contig_info.pb",
                                        "vloupe": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/VLOUPE_PREPROCESS/fork0/chnk0-ucc6a7a7cd5/files/output_for_vloupe.vloupe",
                                        "web_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/web_summary.html",
                                        "web_summary_data": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/web_summary_data.json"
                                    }
                                },
                                "multi_web_summaries": {
                                    "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_WEB_SUMMARY/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_web_summary.html"
                                },
                                "multi_web_summary_json": {
                                    "metrics_summary_csv": {
                                        "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/WRITE_MULTI_WEB_SUMMARY_JSON/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_metric_summary_csv.json.csv"
                                    },
                                    "web_summary_json": {
                                        "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/WRITE_MULTI_WEB_SUMMARY_JSON/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_web_summary_data.json"
                                    }
                                },
                                "sample_analyzer": {
                                    "dimitri-multi": {
                                        "antibody_analyzer": null,
                                        "crispr_analyzer": null,
                                        "rna_analyzer": {
                                            "analysis": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d8e/files/analysis",
                                            "analysis_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d8e/files/analysis_csv",
                                            "cloupe_matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork_dimitri-multi/join-ucc6a7a7d7a/files/cloupe_matrix_h5.h5",
                                            "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d8e/files/summary.json"
                                        },
                                        "targeted_analyzer": null
                                    }
                                },
                                "sample_outs": {
                                    "dimitri-multi": {
                                        "feature_reference": null,
                                        "target_panel": null,
                                        "sample": "dimitri-multi",
                                        "bam_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_dimitri-multi.bam",
                                        "bam_index_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_dimitri-multi.bam.bai",
                                        "molecule_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/molecule_info_dimitri-multi.h5",
                                        "matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                                        "all_genes_matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix.h5",
                                        "filtered_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_barcodes.csv",
                                        "matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix",
                                        "all_genes_matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix",
                                        "metrics_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_summary.json",
                                        "per_barcode_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_per_barcode_metrics.csv"
                                    }
                                },
                                "sample_reporter": {
                                    "dimitri-multi": {
                                        "cloupe": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/CLOUPE_PREPROCESS/fork_dimitri-multi/join-ucc6a7a7db5/files/output_for_cloupe.cloupe",
                                        "metrics_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS/fork_dimitri-multi/join-ucc6a7a7db3/files/summary.json",
                                        "sample_tsne_plots": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/GENERATE_SAMPLE_TSNE_PLOTS/fork_dimitri-multi/join-ucc6a7a7d8f/files/sample_tsne_plots.json",
                                        "vdj_b_report": null,
                                        "vdj_t_report": null
                                    }
                                },
                                "split_vdj": {
                                    "vdj_b_chemistry_type": "SCVDJ-R2",
                                    "vdj_b_input": {
                                        "chain_type": "IG",
                                        "chemistry": "SCVDJ_auto",
                                        "custom_chemistry_def": null,
                                        "denovo": false,
                                        "force_cells": null,
                                        "ground_truth_clonotype_path": null,
                                        "initial_reads": null,
                                        "inner_enrichment_primers": null,
                                        "physical_library_id": "VDJB_1",
                                        "primer_initial_reads": null,
                                        "primers": [
                                            {
                                                "name": "P5",
                                                "seq": "AATGATACGGCGACCACCGAGATCT"
                                            },
                                            {
                                                "name": "P7",
                                                "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                            },
                                            {
                                                "name": "R1",
                                                "seq": "ACACTCTTTCCCTACACGACGCTCTTCCGATCT"
                                            },
                                            {
                                                "name": "R2",
                                                "seq": "GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT"
                                            },
                                            {
                                                "name": "polyA",
                                                "seq": "AAAAAAAAAAAAAAAAAAAA"
                                            },
                                            {
                                                "name": "rt_primer",
                                                "seq": "AAGCAGTGGTATCAACGCAGAGTACAT"
                                            },
                                            {
                                                "name": "spacer",
                                                "seq": "TTTCTTATATGGG"
                                            }
                                        ],
                                        "r1_length": null,
                                        "r2_length": null,
                                        "sample_def": [
                                            {
                                                "fastq_id": "dimitri_BCR",
                                                "fastq_mode": "ILMN_BCL2FASTQ",
                                                "gem_group": 1,
                                                "lanes": null,
                                                "library_type": "VDJ",
                                                "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                                "sample_indices": null,
                                                "sample_names": [
                                                    "dimitri_BCR"
                                                ],
                                                "subsample_rate": null,
                                                "target_set": null,
                                                "target_set_name": null
                                            }
                                        ],
                                        "special_genomic_regions": null,
                                        "subsample_rate": null
                                    },
                                    "vdj_b_receptor": "IG",
                                    "vdj_t_chemistry_type": "SCVDJ-R2",
                                    "vdj_t_input": {
                                        "chain_type": "TR",
                                        "chemistry": "SCVDJ_auto",
                                        "custom_chemistry_def": null,
                                        "denovo": false,
                                        "force_cells": null,
                                        "ground_truth_clonotype_path": null,
                                        "initial_reads": null,
                                        "inner_enrichment_primers": null,
                                        "physical_library_id": "VDJT_1",
                                        "primer_initial_reads": null,
                                        "primers": [
                                            {
                                                "name": "P5",
                                                "seq": "AATGATACGGCGACCACCGAGATCT"
                                            },
                                            {
                                                "name": "P7",
                                                "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                            },
                                            {
                                                "name": "R1",
                                                "seq": "ACACTCTTTCCCTACACGACGCTCTTCCGATCT"
                                            },
                                            {
                                                "name": "R2",
                                                "seq": "GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT"
                                            },
                                            {
                                                "name": "polyA",
                                                "seq": "AAAAAAAAAAAAAAAAAAAA"
                                            },
                                            {
                                                "name": "rt_primer",
                                                "seq": "AAGCAGTGGTATCAACGCAGAGTACAT"
                                            },
                                            {
                                                "name": "spacer",
                                                "seq": "TTTCTTATATGGG"
                                            }
                                        ],
                                        "r1_length": null,
                                        "r2_length": null,
                                        "sample_def": [
                                            {
                                                "fastq_id": "dimitri_TCR",
                                                "fastq_mode": "ILMN_BCL2FASTQ",
                                                "gem_group": 1,
                                                "lanes": null,
                                                "library_type": "VDJ",
                                                "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                                "sample_indices": null,
                                                "sample_names": [
                                                    "dimitri_TCR"
                                                ],
                                                "subsample_rate": null,
                                                "target_set": null,
                                                "target_set_name": null
                                            }
                                        ],
                                        "special_genomic_regions": null,
                                        "subsample_rate": null
                                    },
                                    "vdj_t_receptor": "TR"
                                },
                                "unassigned_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_unassigned.bam.bai",
                                "unassigned_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_unassigned.bam",
                                "vdj_b_clonotype": {
                                    "airr_rearrangement": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0-ucc6a7a7ce7/files/airr_annotations.tsv",
                                    "all_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd8/files/all_contig_annotations.csv",
                                    "all_contig_annotations_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd8/files/all_contig_annotations.json",
                                    "clonotypes_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd7/files/clonotypes.csv",
                                    "concat_ref_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.bam",
                                    "concat_ref_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.bam.bai",
                                    "concat_ref_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta",
                                    "concat_ref_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta.fai",
                                    "consensus_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus_annotations.csv",
                                    "consensus_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd8/files/consensus.bam",
                                    "consensus_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd8/files/consensus.bam.bai",
                                    "consensus_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus.fasta",
                                    "consensus_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus.fasta.fai",
                                    "disable_vloupe": false,
                                    "donor_ref_fa": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/donor_ref.fa",
                                    "enclone_output": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/enclone_output.pb",
                                    "filtered_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_annotations.csv",
                                    "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/summary.json"
                                },
                                "vdj_ref_out": {
                                    "fasta": {
                                        "donor_regions": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COPY_VDJ_REFERENCE/fork0/chnk0-ucc6a7a7cd7/files/donor_regions.fa",
                                        "regions": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COPY_VDJ_REFERENCE/fork0/chnk0-ucc6a7a7cd7/files/regions.fa"
                                    },
                                    "reference": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COPY_VDJ_REFERENCE/fork0/chnk0-ucc6a7a7cd7/files/reference.json"
                                },
                                "vdj_t_clonotype": {
                                    "airr_rearrangement": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0-ucc6a7a7cdd/files/airr_annotations.tsv",
                                    "all_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.csv",
                                    "all_contig_annotations_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.json",
                                    "clonotypes_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd5/files/clonotypes.csv",
                                    "concat_ref_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.bam",
                                    "concat_ref_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.bam.bai",
                                    "concat_ref_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.fasta",
                                    "concat_ref_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.fasta.fai",
                                    "consensus_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus_annotations.csv",
                                    "consensus_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd7/files/consensus.bam",
                                    "consensus_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd7/files/consensus.bam.bai",
                                    "consensus_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus.fasta",
                                    "consensus_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus.fasta.fai",
                                    "disable_vloupe": false,
                                    "donor_ref_fa": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/donor_ref.fa",
                                    "enclone_output": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/enclone_output.pb",
                                    "filtered_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_annotations.csv",
                                    "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/summary.json"
                                }
                            },
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "vdj_t_outs_cs",
                            "type": "VdjOutputsCS",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "airr_rearrangement": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0-ucc6a7a7cdd/files/airr_annotations.tsv",
                                "all_contig_annotations_bed": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/annotations_bed.bed",
                                "all_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.csv",
                                "all_contig_annotations_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.json",
                                "all_contig_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_bam.bam",
                                "all_contig_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_bam.bam.bai",
                                "all_contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fasta.fasta",
                                "all_contig_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fasta.fasta.fai",
                                "all_contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fastq.fastq",
                                "cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/cell_barcodes.json",
                                "clonotypes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd5/files/clonotypes.csv",
                                "concat_ref_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.bam",
                                "concat_ref_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.bam.bai",
                                "concat_ref_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.fasta",
                                "concat_ref_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.fasta.fai",
                                "consensus_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus_annotations.csv",
                                "consensus_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd7/files/consensus.bam",
                                "consensus_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd7/files/consensus.bam.bai",
                                "consensus_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus.fasta",
                                "consensus_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus.fasta.fai",
                                "filtered_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_annotations.csv",
                                "filtered_contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_fasta.fasta",
                                "filtered_contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_fastq.fastq",
                                "metrics_summary_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/metrics_summary_csv.csv",
                                "vdj_contig_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_PROTO/fork0/chnk0-ucc6a7a7ce7/files/vdj_contig_info.pb",
                                "vloupe": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/VLOUPE_PREPROCESS/fork0/chnk0-ucc6a7a7cd5/files/output_for_vloupe.vloupe"
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_t_web_summary",
                            "type": "html",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/web_summary.html",
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_outs_cs",
                            "type": "VdjOutputsCS",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "airr_rearrangement": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0-ucc6a7a7ce7/files/airr_annotations.tsv",
                                "all_contig_annotations_bed": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/annotations_bed.bed",
                                "all_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd8/files/all_contig_annotations.csv",
                                "all_contig_annotations_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd8/files/all_contig_annotations.json",
                                "all_contig_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_bam.bam",
                                "all_contig_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_bam.bam.bai",
                                "all_contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fasta.fasta",
                                "all_contig_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fasta.fasta.fai",
                                "all_contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fastq.fastq",
                                "cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/cell_barcodes.json",
                                "clonotypes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd7/files/clonotypes.csv",
                                "concat_ref_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.bam",
                                "concat_ref_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.bam.bai",
                                "concat_ref_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta",
                                "concat_ref_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta.fai",
                                "consensus_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus_annotations.csv",
                                "consensus_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd8/files/consensus.bam",
                                "consensus_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd8/files/consensus.bam.bai",
                                "consensus_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus.fasta",
                                "consensus_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus.fasta.fai",
                                "filtered_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_annotations.csv",
                                "filtered_contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_fasta.fasta",
                                "filtered_contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_fastq.fastq",
                                "metrics_summary_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/metrics_summary_csv.csv",
                                "vdj_contig_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_PROTO/fork0/chnk0-ucc6a7a7cea/files/vdj_contig_info.pb",
                                "vloupe": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/VLOUPE_PREPROCESS/fork0/chnk0-ucc6a7a7cd7/files/output_for_vloupe.vloupe"
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_web_summary",
                            "type": "html",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/web_summary.html",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.BUILD_VDJ_OUTPUTS_CS"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "FULL_COUNT_INPUTS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_COUNT_INPUTS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_COUNT_INPUTS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_COUNT_INPUTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_COUNT_INPUTS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_COUNT_INPUTS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "cs_inputs",
                            "type": "CountInputsMinimal",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": {
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_RNA",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "Gene Expression",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_RNA"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "chemistry": "auto",
                                "reference_path": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                                "cell_calling_config": {
                                    "cell_barcodes": null,
                                    "disable_ab_aggregate_detection": false,
                                    "force_cells": null,
                                    "override_library_types": null,
                                    "override_mode": null,
                                    "recovered_cells": null
                                },
                                "r1_length": null,
                                "r2_length": null,
                                "no_bam": false,
                                "no_secondary_analysis": false,
                                "no_target_umi_filter": false,
                                "feature_reference": null,
                                "include_introns": false,
                                "targeting_method": null,
                                "force_sample_barcodes": null,
                                "tenx_cmos": null,
                                "min_assignment_confidence": null
                            },
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "sample_def",
                            "type": "map[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "fastq_id": "dimitri_RNA",
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": 1,
                                    "lanes": null,
                                    "library_type": "Gene Expression",
                                    "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                    "sample_indices": null,
                                    "sample_names": [
                                        "dimitri_RNA"
                                    ],
                                    "subsample_rate": null,
                                    "target_set": null,
                                    "target_set_name": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "auto",
                            "waiting": false
                        },
                        {
                            "id": "custom_chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        },
                        {
                            "id": "gene_index",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_COUNT_INPUTS/WRITE_GENE_INDEX/fork0/chnk0-ucc6a7a71a3/files/gene_index.json",
                            "waiting": false
                        },
                        {
                            "id": "primers",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": [
                                {
                                    "name": "P5",
                                    "seq": "AATGATACGGCGACCACCGAGATCT"
                                },
                                {
                                    "name": "P7",
                                    "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                },
                                {
                                    "name": "R1",
                                    "seq": "ACACTCTTTCCCTACACGACG"
                                },
                                {
                                    "name": "R2",
                                    "seq": "GTGACTGGAGTTCAGACGTGTG"
                                },
                                {
                                    "name": "switch_oligo",
                                    "seq": "AAGCAGTGGTATCAACGCAGAGTACATGGG"
                                },
                                {
                                    "name": "polyA",
                                    "seq": "AAAAAAAAAAAAAAAAAAAA"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "cell_calling_config",
                            "type": "CellCalling",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "cell_barcodes": null,
                                "disable_ab_aggregate_detection": false,
                                "force_cells": null,
                                "override_library_types": null,
                                "override_mode": null,
                                "recovered_cells": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "subsample_rate",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "initial_reads",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "primer_initial_reads",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "special_genomic_regions",
                            "type": "string[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "trim_polya_min_score",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": 20,
                            "waiting": false
                        },
                        {
                            "id": "trim_tso_min_score",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": 20,
                            "waiting": false
                        },
                        {
                            "id": "no_bam",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "no_secondary_analysis",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "no_target_umi_filter",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "include_introns",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "targeting_method",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "aligner",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "probe_barcodes_intended_pairing",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "genetic_demux_params",
                            "type": "map",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "enforce_library_concordance",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "count_allowed_chems",
                            "type": "string[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": [
                                "auto",
                                "custom",
                                "threeprime",
                                "fiveprime",
                                "SC3P_auto",
                                "SC5P_auto",
                                "SC3Pv1",
                                "SC3Pv2",
                                "SC3Pv3",
                                "SC3Pv3LT",
                                "SC3Pv3HT",
                                "SC5P-PE",
                                "SC5P-R1",
                                "SC5P-R2",
                                "SC5PHT",
                                "SC-FB",
                                "ARC-v1"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "throughput",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_sample_barcodes",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tenx_cmos",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "min_assignment_confidence",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS.WRITE_GENE_INDEX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "WRITE_GENE_INDEX",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS.WRITE_GENE_INDEX",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_COUNT_INPUTS/WRITE_GENE_INDEX",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_COUNT_INPUTS/WRITE_GENE_INDEX",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 6,
                    "__vmem_gb": 9
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_COUNT_INPUTS/WRITE_GENE_INDEX/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_COUNT_INPUTS/WRITE_GENE_INDEX/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_COUNT_INPUTS/WRITE_GENE_INDEX/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_COUNT_INPUTS/WRITE_GENE_INDEX/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "gene_index",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS.WRITE_GENE_INDEX",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_COUNT_INPUTS/WRITE_GENE_INDEX/fork0/chnk0-ucc6a7a71a3/files/gene_index.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS.WRITE_GENE_INDEX"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian write_gene_index"
    },
    {
        "name": "FULL_VDJ_INPUTS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.FULL_VDJ_INPUTS",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_VDJ_INPUTS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_VDJ_INPUTS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_VDJ_INPUTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_VDJ_INPUTS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_VDJ_INPUTS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "cs_inputs",
                            "type": "VdjInputsCS",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": {
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_BCR",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "VDJ",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_BCR"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "denovo": false,
                                "force_cells": null,
                                "inner_enrichment_primers": null,
                                "chain_type": "IG",
                                "physical_library_id": "VDJB_1",
                                "r1_length": null,
                                "r2_length": null
                            },
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "sample_def",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": [
                                {
                                    "fastq_id": "dimitri_BCR",
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": 1,
                                    "lanes": null,
                                    "library_type": "VDJ",
                                    "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                    "sample_indices": null,
                                    "sample_names": [
                                        "dimitri_BCR"
                                    ],
                                    "subsample_rate": null,
                                    "target_set": null,
                                    "target_set_name": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "SCVDJ_auto",
                            "waiting": false
                        },
                        {
                            "id": "custom_chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "primers",
                            "type": "map[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "name": "P5",
                                    "seq": "AATGATACGGCGACCACCGAGATCT"
                                },
                                {
                                    "name": "P7",
                                    "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                },
                                {
                                    "name": "R1",
                                    "seq": "ACACTCTTTCCCTACACGACGCTCTTCCGATCT"
                                },
                                {
                                    "name": "R2",
                                    "seq": "GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT"
                                },
                                {
                                    "name": "polyA",
                                    "seq": "AAAAAAAAAAAAAAAAAAAA"
                                },
                                {
                                    "name": "rt_primer",
                                    "seq": "AAGCAGTGGTATCAACGCAGAGTACAT"
                                },
                                {
                                    "name": "spacer",
                                    "seq": "TTTCTTATATGGG"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "subsample_rate",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "initial_reads",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "primer_initial_reads",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "special_genomic_regions",
                            "type": "string[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "denovo",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "ground_truth_clonotype_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "inner_enrichment_primers",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chain_type",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "IG",
                            "waiting": false
                        },
                        {
                            "id": "physical_library_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "VDJB_1",
                            "waiting": false
                        }
                    ]
                }
            },
            {
                "index": 1,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_VDJ_INPUTS/fork1",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_VDJ_INPUTS/fork1/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_VDJ_INPUTS/fork1/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "cs_inputs",
                            "type": "VdjInputsCS",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": {
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_TCR",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "VDJ",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_TCR"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "denovo": false,
                                "force_cells": null,
                                "inner_enrichment_primers": null,
                                "chain_type": "TR",
                                "physical_library_id": "VDJT_1",
                                "r1_length": null,
                                "r2_length": null
                            },
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "sample_def",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": [
                                {
                                    "fastq_id": "dimitri_TCR",
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": 1,
                                    "lanes": null,
                                    "library_type": "VDJ",
                                    "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                    "sample_indices": null,
                                    "sample_names": [
                                        "dimitri_TCR"
                                    ],
                                    "subsample_rate": null,
                                    "target_set": null,
                                    "target_set_name": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "SCVDJ_auto",
                            "waiting": false
                        },
                        {
                            "id": "custom_chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "primers",
                            "type": "map[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "name": "P5",
                                    "seq": "AATGATACGGCGACCACCGAGATCT"
                                },
                                {
                                    "name": "P7",
                                    "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                },
                                {
                                    "name": "R1",
                                    "seq": "ACACTCTTTCCCTACACGACGCTCTTCCGATCT"
                                },
                                {
                                    "name": "R2",
                                    "seq": "GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT"
                                },
                                {
                                    "name": "polyA",
                                    "seq": "AAAAAAAAAAAAAAAAAAAA"
                                },
                                {
                                    "name": "rt_primer",
                                    "seq": "AAGCAGTGGTATCAACGCAGAGTACAT"
                                },
                                {
                                    "name": "spacer",
                                    "seq": "TTTCTTATATGGG"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "subsample_rate",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "initial_reads",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "primer_initial_reads",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "special_genomic_regions",
                            "type": "string[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "denovo",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "ground_truth_clonotype_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "inner_enrichment_primers",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chain_type",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "TR",
                            "waiting": false
                        },
                        {
                            "id": "physical_library_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "VDJT_1",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.FULL_VDJ_INPUTS"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "MULTI_PREFLIGHT",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.MULTI_PREFLIGHT",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/MULTI_PREFLIGHT",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/MULTI_PREFLIGHT",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/MULTI_PREFLIGHT/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/MULTI_PREFLIGHT/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/MULTI_PREFLIGHT/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/MULTI_PREFLIGHT/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "config",
                            "type": "FileOrBytes",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "bytes": null,
                                "file": "/scratch/etanis/ST-118/multi/220510_multi-config-template_2.csv"
                            },
                            "waiting": false
                        },
                        {
                            "id": "is_pd",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": null
                }
            }
        ],
        "edges": [],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian multi_preflight"
    },
    {
        "name": "MULTI_PREFLIGHT_LOCAL",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.MULTI_PREFLIGHT_LOCAL",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/MULTI_PREFLIGHT_LOCAL",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/MULTI_PREFLIGHT_LOCAL",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/MULTI_PREFLIGHT_LOCAL/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/MULTI_PREFLIGHT_LOCAL/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/MULTI_PREFLIGHT_LOCAL/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/MULTI_PREFLIGHT_LOCAL/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "config",
                            "type": "FileOrBytes",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "bytes": null,
                                "file": "/scratch/etanis/ST-118/multi/220510_multi-config-template_2.csv"
                            },
                            "waiting": false
                        },
                        {
                            "id": "is_pd",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": null
                }
            }
        ],
        "edges": [],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian multi_preflight"
    },
    {
        "name": "PARSE_MULTI_CONFIG",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 6,
                    "__vmem_gb": 9
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "config",
                            "type": "FileOrBytes",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "bytes": null,
                                "file": "/scratch/etanis/ST-118/multi/220510_multi-config-template_2.csv"
                            },
                            "waiting": false
                        },
                        {
                            "id": "config_hash",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "441f739f093e36c43f57328492fe5aa9703c212f8c5a330ff0ef60c31a5f08c4",
                            "waiting": false
                        },
                        {
                            "id": "params",
                            "type": "map",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_pd",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "common_input",
                            "type": "CommonInputs",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": {
                                "multi_config_sha": "441f739f093e36c43f57328492fe5aa9703c212f8c5a330ff0ef60c31a5f08c4",
                                "sample_desc": "",
                                "sample_id": "dimitri-multi"
                            },
                            "waiting": false
                        },
                        {
                            "id": "count_input",
                            "type": "CountInputs",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": {
                                "aligner": null,
                                "cell_calling_config": {
                                    "cell_barcodes": null,
                                    "disable_ab_aggregate_detection": false,
                                    "force_cells": null,
                                    "override_library_types": null,
                                    "override_mode": null,
                                    "recovered_cells": null
                                },
                                "chemistry": "auto",
                                "custom_chemistry_def": null,
                                "enforce_library_concordance": true,
                                "feature_reference": null,
                                "force_sample_barcodes": null,
                                "gene_index": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG/fork0/chnk0-ucc6a7a7197/files/gene_index.json",
                                "genetic_demux_params": null,
                                "include_introns": false,
                                "initial_reads": null,
                                "min_assignment_confidence": null,
                                "no_bam": false,
                                "no_secondary_analysis": false,
                                "no_target_umi_filter": false,
                                "primer_initial_reads": 1000000,
                                "primers": [],
                                "probe_barcodes_intended_pairing": null,
                                "r1_length": null,
                                "r2_length": null,
                                "reference_path": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_RNA",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "Gene Expression",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_RNA"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "special_genomic_regions": null,
                                "subsample_rate": null,
                                "targeting_method": null,
                                "tenx_cmos": null,
                                "throughput": null,
                                "trim_polya_min_score": null,
                                "trim_tso_min_score": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_inputs",
                            "type": "VdjInputs[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": [
                                {
                                    "chain_type": "IG",
                                    "chemistry": "SCVDJ_auto",
                                    "custom_chemistry_def": null,
                                    "denovo": false,
                                    "force_cells": null,
                                    "ground_truth_clonotype_path": null,
                                    "initial_reads": null,
                                    "inner_enrichment_primers": null,
                                    "physical_library_id": "VDJB_1",
                                    "primer_initial_reads": 1000000,
                                    "primers": [],
                                    "r1_length": null,
                                    "r2_length": null,
                                    "sample_def": [
                                        {
                                            "fastq_id": "dimitri_BCR",
                                            "fastq_mode": "ILMN_BCL2FASTQ",
                                            "gem_group": 1,
                                            "lanes": null,
                                            "library_type": "VDJ",
                                            "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                            "sample_indices": null,
                                            "sample_names": [
                                                "dimitri_BCR"
                                            ],
                                            "subsample_rate": null,
                                            "target_set": null,
                                            "target_set_name": null
                                        }
                                    ],
                                    "special_genomic_regions": null,
                                    "subsample_rate": null
                                },
                                {
                                    "chain_type": "TR",
                                    "chemistry": "SCVDJ_auto",
                                    "custom_chemistry_def": null,
                                    "denovo": false,
                                    "force_cells": null,
                                    "ground_truth_clonotype_path": null,
                                    "initial_reads": null,
                                    "inner_enrichment_primers": null,
                                    "physical_library_id": "VDJT_1",
                                    "primer_initial_reads": 1000000,
                                    "primers": [],
                                    "r1_length": null,
                                    "r2_length": null,
                                    "sample_def": [
                                        {
                                            "fastq_id": "dimitri_TCR",
                                            "fastq_mode": "ILMN_BCL2FASTQ",
                                            "gem_group": 1,
                                            "lanes": null,
                                            "library_type": "VDJ",
                                            "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                            "sample_indices": null,
                                            "sample_names": [
                                                "dimitri_TCR"
                                            ],
                                            "subsample_rate": null,
                                            "target_set": null,
                                            "target_set_name": null
                                        }
                                    ],
                                    "special_genomic_regions": null,
                                    "subsample_rate": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "vdj_gen_inputs",
                            "type": "VdjGenInputs",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": {
                                "reference_path": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                                "vdj_reference_path": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0"
                            },
                            "waiting": false
                        },
                        {
                            "id": "basic_config",
                            "type": "BasicPipelineConfig",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": {
                                "disable_count": false,
                                "disable_multi": false,
                                "disable_multi_count": false,
                                "disable_vdj": false
                            },
                            "waiting": false
                        },
                        {
                            "id": "config_file",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG/fork0/chnk0-ucc6a7a7197/files/config.csv",
                            "waiting": false
                        },
                        {
                            "id": "multi_graph",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG/fork0/chnk0-ucc6a7a7197/files/multi_graph.json",
                            "waiting": false
                        },
                        {
                            "id": "feature_ref",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian parse_multi_config"
    },
    {
        "name": "SANITIZE_MAP_CALLS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SANITIZE_MAP_CALLS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SANITIZE_MAP_CALLS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SANITIZE_MAP_CALLS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SANITIZE_MAP_CALLS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SANITIZE_MAP_CALLS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SANITIZE_MAP_CALLS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SANITIZE_MAP_CALLS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "in_crispr_analysis",
                            "type": "map\u003cpath\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "in_antibody_analysis",
                            "type": "map\u003cpath\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "in_rna_analysis",
                            "type": "map\u003cpath\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d8e/files/analysis_csv"
                            },
                            "waiting": false
                        },
                        {
                            "id": "in_cloupe_file",
                            "type": "map\u003ccloupe\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/CLOUPE_PREPROCESS/fork_dimitri-multi/join-ucc6a7a7db5/files/output_for_cloupe.cloupe"
                            },
                            "waiting": false
                        },
                        {
                            "id": "in_metrics_summary",
                            "type": "map\u003cjson\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS/fork_dimitri-multi/join-ucc6a7a7db3/files/summary.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "in_sample_tsne_plots",
                            "type": "map\u003cjson\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "in_barcode_rank_plots",
                            "type": "map\u003cjson\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "crispr_analysis",
                            "type": "map\u003cpath\u003e",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SANITIZE_MAP_CALLS",
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "antibody_analysis",
                            "type": "map\u003cpath\u003e",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SANITIZE_MAP_CALLS",
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "rna_analysis",
                            "type": "map\u003cpath\u003e",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SANITIZE_MAP_CALLS",
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SANITIZE_MAP_CALLS/fork0/chnk0-ucc6a7a7dbf/files/dimitri-multi_analysis_csv"
                            },
                            "waiting": false
                        },
                        {
                            "id": "cloupe_file",
                            "type": "map\u003ccloupe\u003e",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SANITIZE_MAP_CALLS",
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SANITIZE_MAP_CALLS/fork0/chnk0-ucc6a7a7dbf/files/dimitri-multi_output_for_cloupe.cloupe"
                            },
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary",
                            "type": "map\u003cjson\u003e",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SANITIZE_MAP_CALLS",
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SANITIZE_MAP_CALLS/fork0/chnk0-ucc6a7a7dbf/files/dimitri-multi_summary.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "sample_tsne_plots",
                            "type": "map\u003cjson\u003e",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SANITIZE_MAP_CALLS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_rank_plots",
                            "type": "map\u003cjson\u003e",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SANITIZE_MAP_CALLS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SANITIZE_MAP_CALLS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/multi/sanitize_map_calls"
    },
    {
        "name": "SC_MULTI_CORE",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "common_input",
                            "type": "CommonInputs",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": {
                                "multi_config_sha": "441f739f093e36c43f57328492fe5aa9703c212f8c5a330ff0ef60c31a5f08c4",
                                "sample_desc": "",
                                "sample_id": "dimitri-multi"
                            },
                            "waiting": false
                        },
                        {
                            "id": "count_input",
                            "type": "CountInputs",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "aligner": null,
                                "cell_calling_config": {
                                    "cell_barcodes": null,
                                    "disable_ab_aggregate_detection": false,
                                    "force_cells": null,
                                    "override_library_types": null,
                                    "override_mode": null,
                                    "recovered_cells": null
                                },
                                "chemistry": "auto",
                                "custom_chemistry_def": null,
                                "enforce_library_concordance": true,
                                "feature_reference": null,
                                "force_sample_barcodes": null,
                                "gene_index": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_COUNT_INPUTS/WRITE_GENE_INDEX/fork0/chnk0-ucc6a7a71a3/files/gene_index.json",
                                "genetic_demux_params": null,
                                "include_introns": false,
                                "initial_reads": null,
                                "min_assignment_confidence": null,
                                "no_bam": false,
                                "no_secondary_analysis": false,
                                "no_target_umi_filter": false,
                                "primer_initial_reads": null,
                                "primers": [
                                    {
                                        "name": "P5",
                                        "seq": "AATGATACGGCGACCACCGAGATCT"
                                    },
                                    {
                                        "name": "P7",
                                        "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                    },
                                    {
                                        "name": "R1",
                                        "seq": "ACACTCTTTCCCTACACGACG"
                                    },
                                    {
                                        "name": "R2",
                                        "seq": "GTGACTGGAGTTCAGACGTGTG"
                                    },
                                    {
                                        "name": "switch_oligo",
                                        "seq": "AAGCAGTGGTATCAACGCAGAGTACATGGG"
                                    },
                                    {
                                        "name": "polyA",
                                        "seq": "AAAAAAAAAAAAAAAAAAAA"
                                    }
                                ],
                                "probe_barcodes_intended_pairing": null,
                                "r1_length": null,
                                "r2_length": null,
                                "reference_path": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_RNA",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "Gene Expression",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_RNA"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "special_genomic_regions": null,
                                "subsample_rate": null,
                                "targeting_method": null,
                                "tenx_cmos": null,
                                "throughput": null,
                                "trim_polya_min_score": 20,
                                "trim_tso_min_score": 20
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_inputs",
                            "type": "VdjInputs[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "chain_type": "IG",
                                    "chemistry": "SCVDJ_auto",
                                    "custom_chemistry_def": null,
                                    "denovo": false,
                                    "force_cells": null,
                                    "ground_truth_clonotype_path": null,
                                    "initial_reads": null,
                                    "inner_enrichment_primers": null,
                                    "physical_library_id": "VDJB_1",
                                    "primer_initial_reads": null,
                                    "primers": [
                                        {
                                            "name": "P5",
                                            "seq": "AATGATACGGCGACCACCGAGATCT"
                                        },
                                        {
                                            "name": "P7",
                                            "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                        },
                                        {
                                            "name": "R1",
                                            "seq": "ACACTCTTTCCCTACACGACGCTCTTCCGATCT"
                                        },
                                        {
                                            "name": "R2",
                                            "seq": "GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT"
                                        },
                                        {
                                            "name": "polyA",
                                            "seq": "AAAAAAAAAAAAAAAAAAAA"
                                        },
                                        {
                                            "name": "rt_primer",
                                            "seq": "AAGCAGTGGTATCAACGCAGAGTACAT"
                                        },
                                        {
                                            "name": "spacer",
                                            "seq": "TTTCTTATATGGG"
                                        }
                                    ],
                                    "r1_length": null,
                                    "r2_length": null,
                                    "sample_def": [
                                        {
                                            "fastq_id": "dimitri_BCR",
                                            "fastq_mode": "ILMN_BCL2FASTQ",
                                            "gem_group": 1,
                                            "lanes": null,
                                            "library_type": "VDJ",
                                            "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                            "sample_indices": null,
                                            "sample_names": [
                                                "dimitri_BCR"
                                            ],
                                            "subsample_rate": null,
                                            "target_set": null,
                                            "target_set_name": null
                                        }
                                    ],
                                    "special_genomic_regions": null,
                                    "subsample_rate": null
                                },
                                {
                                    "chain_type": "TR",
                                    "chemistry": "SCVDJ_auto",
                                    "custom_chemistry_def": null,
                                    "denovo": false,
                                    "force_cells": null,
                                    "ground_truth_clonotype_path": null,
                                    "initial_reads": null,
                                    "inner_enrichment_primers": null,
                                    "physical_library_id": "VDJT_1",
                                    "primer_initial_reads": null,
                                    "primers": [
                                        {
                                            "name": "P5",
                                            "seq": "AATGATACGGCGACCACCGAGATCT"
                                        },
                                        {
                                            "name": "P7",
                                            "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                        },
                                        {
                                            "name": "R1",
                                            "seq": "ACACTCTTTCCCTACACGACGCTCTTCCGATCT"
                                        },
                                        {
                                            "name": "R2",
                                            "seq": "GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT"
                                        },
                                        {
                                            "name": "polyA",
                                            "seq": "AAAAAAAAAAAAAAAAAAAA"
                                        },
                                        {
                                            "name": "rt_primer",
                                            "seq": "AAGCAGTGGTATCAACGCAGAGTACAT"
                                        },
                                        {
                                            "name": "spacer",
                                            "seq": "TTTCTTATATGGG"
                                        }
                                    ],
                                    "r1_length": null,
                                    "r2_length": null,
                                    "sample_def": [
                                        {
                                            "fastq_id": "dimitri_TCR",
                                            "fastq_mode": "ILMN_BCL2FASTQ",
                                            "gem_group": 1,
                                            "lanes": null,
                                            "library_type": "VDJ",
                                            "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                            "sample_indices": null,
                                            "sample_names": [
                                                "dimitri_TCR"
                                            ],
                                            "subsample_rate": null,
                                            "target_set": null,
                                            "target_set_name": null
                                        }
                                    ],
                                    "special_genomic_regions": null,
                                    "subsample_rate": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "vdj_gen_inputs",
                            "type": "VdjGenInputs",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": {
                                "reference_path": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                                "vdj_reference_path": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0"
                            },
                            "waiting": false
                        },
                        {
                            "id": "basic_config",
                            "type": "BasicPipelineConfig",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": {
                                "disable_count": false,
                                "disable_multi": false,
                                "disable_multi_count": false,
                                "disable_vdj": false
                            },
                            "waiting": false
                        },
                        {
                            "id": "multi_graph",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG/fork0/chnk0-ucc6a7a7197/files/multi_graph.json",
                            "waiting": false
                        },
                        {
                            "id": "multi_config",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG/fork0/chnk0-ucc6a7a7197/files/config.csv",
                            "waiting": false
                        },
                        {
                            "id": "is_pd",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "count_allowed_chems",
                            "type": "string[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": [
                                "auto",
                                "custom",
                                "threeprime",
                                "fiveprime",
                                "SC3P_auto",
                                "SC5P_auto",
                                "SC3Pv1",
                                "SC3Pv2",
                                "SC3Pv3",
                                "SC3Pv3LT",
                                "SC3Pv3HT",
                                "SC5P-PE",
                                "SC5P-R1",
                                "SC5P-R2",
                                "SC5PHT",
                                "SC-FB",
                                "ARC-v1"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "count_pipestance_type",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "SC_RNA_COUNTER_CS",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "full_config",
                            "type": "FullPipelineConfig",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "disable_count": false,
                                "disable_multi": false,
                                "disable_multi_count": false,
                                "disable_vdj_b": false,
                                "disable_vdj_t": false,
                                "has_no_vdj_ref": false
                            },
                            "waiting": false
                        },
                        {
                            "id": "split_vdj",
                            "type": "SPLIT_VDJ_INPUTS",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "vdj_b_chemistry_type": "SCVDJ-R2",
                                "vdj_b_input": {
                                    "chain_type": "IG",
                                    "chemistry": "SCVDJ_auto",
                                    "custom_chemistry_def": null,
                                    "denovo": false,
                                    "force_cells": null,
                                    "ground_truth_clonotype_path": null,
                                    "initial_reads": null,
                                    "inner_enrichment_primers": null,
                                    "physical_library_id": "VDJB_1",
                                    "primer_initial_reads": null,
                                    "primers": [
                                        {
                                            "name": "P5",
                                            "seq": "AATGATACGGCGACCACCGAGATCT"
                                        },
                                        {
                                            "name": "P7",
                                            "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                        },
                                        {
                                            "name": "R1",
                                            "seq": "ACACTCTTTCCCTACACGACGCTCTTCCGATCT"
                                        },
                                        {
                                            "name": "R2",
                                            "seq": "GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT"
                                        },
                                        {
                                            "name": "polyA",
                                            "seq": "AAAAAAAAAAAAAAAAAAAA"
                                        },
                                        {
                                            "name": "rt_primer",
                                            "seq": "AAGCAGTGGTATCAACGCAGAGTACAT"
                                        },
                                        {
                                            "name": "spacer",
                                            "seq": "TTTCTTATATGGG"
                                        }
                                    ],
                                    "r1_length": null,
                                    "r2_length": null,
                                    "sample_def": [
                                        {
                                            "fastq_id": "dimitri_BCR",
                                            "fastq_mode": "ILMN_BCL2FASTQ",
                                            "gem_group": 1,
                                            "lanes": null,
                                            "library_type": "VDJ",
                                            "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                            "sample_indices": null,
                                            "sample_names": [
                                                "dimitri_BCR"
                                            ],
                                            "subsample_rate": null,
                                            "target_set": null,
                                            "target_set_name": null
                                        }
                                    ],
                                    "special_genomic_regions": null,
                                    "subsample_rate": null
                                },
                                "vdj_b_receptor": "IG",
                                "vdj_t_chemistry_type": "SCVDJ-R2",
                                "vdj_t_input": {
                                    "chain_type": "TR",
                                    "chemistry": "SCVDJ_auto",
                                    "custom_chemistry_def": null,
                                    "denovo": false,
                                    "force_cells": null,
                                    "ground_truth_clonotype_path": null,
                                    "initial_reads": null,
                                    "inner_enrichment_primers": null,
                                    "physical_library_id": "VDJT_1",
                                    "primer_initial_reads": null,
                                    "primers": [
                                        {
                                            "name": "P5",
                                            "seq": "AATGATACGGCGACCACCGAGATCT"
                                        },
                                        {
                                            "name": "P7",
                                            "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                        },
                                        {
                                            "name": "R1",
                                            "seq": "ACACTCTTTCCCTACACGACGCTCTTCCGATCT"
                                        },
                                        {
                                            "name": "R2",
                                            "seq": "GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT"
                                        },
                                        {
                                            "name": "polyA",
                                            "seq": "AAAAAAAAAAAAAAAAAAAA"
                                        },
                                        {
                                            "name": "rt_primer",
                                            "seq": "AAGCAGTGGTATCAACGCAGAGTACAT"
                                        },
                                        {
                                            "name": "spacer",
                                            "seq": "TTTCTTATATGGG"
                                        }
                                    ],
                                    "r1_length": null,
                                    "r2_length": null,
                                    "sample_def": [
                                        {
                                            "fastq_id": "dimitri_TCR",
                                            "fastq_mode": "ILMN_BCL2FASTQ",
                                            "gem_group": 1,
                                            "lanes": null,
                                            "library_type": "VDJ",
                                            "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                            "sample_indices": null,
                                            "sample_names": [
                                                "dimitri_TCR"
                                            ],
                                            "subsample_rate": null,
                                            "target_set": null,
                                            "target_set_name": null
                                        }
                                    ],
                                    "special_genomic_regions": null,
                                    "subsample_rate": null
                                },
                                "vdj_t_receptor": "TR"
                            },
                            "waiting": false
                        },
                        {
                            "id": "multi_gw",
                            "type": "MULTI_GEM_WELL_PROCESSOR",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "count": {
                                    "basic_counter_outs": {
                                        "aggregate_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/aggregate_barcodes.csv",
                                        "alignments": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/pos_sorted.asf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/pos_sorted.asf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/pos_sorted.asf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/pos_sorted.asf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/pos_sorted.asf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/pos_sorted.asf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/pos_sorted.asf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/pos_sorted.asf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/pos_sorted.asf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/pos_sorted.asf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/pos_sorted.asf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/pos_sorted.asf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/pos_sorted.asf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/pos_sorted.asf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/pos_sorted.asf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/pos_sorted.asf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/pos_sorted.asf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/pos_sorted.asf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/pos_sorted.asf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/pos_sorted.asf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/pos_sorted.asf"
                                        ],
                                        "annotation_files": null,
                                        "assign_tags": {
                                            "assignment_confidence_table": null,
                                            "cells_per_tag": null,
                                            "gem_well_inferred_throughputs": null,
                                            "gem_well_throughput": null,
                                            "jibes_model_summary": null,
                                            "jibes_parameters": null,
                                            "jibes_summary_data": null,
                                            "marginal_tag_frequencies": null,
                                            "non_tag_assignments": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/CALL_TAGS_JIBES/fork0/join-ucc6a7a7cdb/files/non_tag_assignments.json",
                                            "sample_assignment_metrics": {
                                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/dimitri-multi_summary.json"
                                            },
                                            "sample_barcodes_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/sample_barcodes.json",
                                            "tag_assigner_pickle": null,
                                            "tag_call_metrics_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/MERGE_METRICS/fork0/chnk0-ucc6a7a7ce0/files/summary.json",
                                            "tag_calls_per_cell": null,
                                            "tag_calls_summary": null,
                                            "tag_contaminant_info": null,
                                            "tag_umi_thresholds_csv": null,
                                            "tag_umi_thresholds_json": null
                                        },
                                        "bam_header": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/join-ucc6a7a77c8/files/bam_header",
                                        "barcode_correction_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/join-ucc6a7a77c8/files/barcode_summary.csv",
                                        "barcode_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0/chnk0-ucc6a7a7c4d/files/barcode_summary.h5",
                                        "barcode_whitelist": "737K-august-2016",
                                        "bc_umi_info": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/bc_umi_info.bui",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/bc_umi_info.bui",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/bc_umi_info.bui",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/bc_umi_info.bui",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/bc_umi_info.bui",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/bc_umi_info.bui",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/bc_umi_info.bui",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/bc_umi_info.bui",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/bc_umi_info.bui",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/bc_umi_info.bui",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/bc_umi_info.bui",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/bc_umi_info.bui",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/bc_umi_info.bui",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/bc_umi_info.bui",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/bc_umi_info.bui",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/bc_umi_info.bui",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/bc_umi_info.bui",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/bc_umi_info.bui",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/bc_umi_info.bui",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/bc_umi_info.bui",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/bc_umi_info.bui"
                                        ],
                                        "filtered_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                                        "filtered_gene_bc_matrices_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                                        "filtered_gene_bc_matrices_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_mex",
                                        "gem_groups": [
                                            1
                                        ],
                                        "gem_well_alignment_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS/fork0/chnk0-ucc6a7a7c4d/files/summary.json",
                                        "merged_subsampling_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUBSAMPLE_READS/fork0/join-ucc6a7a7cd4/files/merged_metrics.pickle",
                                        "molecule_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ccd/files/molecule_info_non_multiplexed.h5",
                                        "multi_matrices": [
                                            {
                                                "sample": "dimitri-multi",
                                                "matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                                                "matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_feature_barcode_matrix",
                                                "all_genes_matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix.h5",
                                                "all_genes_matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix",
                                                "filtered_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_barcodes.csv"
                                            }
                                        ],
                                        "multi_metrics": [
                                            {
                                                "per_barcode_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS/fork0/chnk0-ucc6a7a7cde/files/per_barcode_metrics.csv",
                                                "per_lib_type_metrics": {},
                                                "sample": "dimitri-multi",
                                                "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS/fork0/chnk0-ucc6a7a7cde/files/summary.json"
                                            }
                                        ],
                                        "multi_molecule_info": [
                                            {
                                                "h5_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ce2/files/molecule_info_dimitri-multi.h5",
                                                "sample": "dimitri-multi",
                                                "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ce2/files/dimitri-multi_summary.json"
                                            }
                                        ],
                                        "multi_pos_sorted_bam": [
                                            {
                                                "bam_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_dimitri-multi.bam",
                                                "bam_index_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_dimitri-multi.bam.bai",
                                                "sample": "dimitri-multi"
                                            },
                                            {
                                                "bam_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_unassigned.bam",
                                                "bam_index_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_unassigned.bam.bai",
                                                "sample": "unassigned"
                                            }
                                        ],
                                        "nonambient_cell_calls": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/nonambient_calls.csv",
                                        "per_barcode_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS/fork0/chnk0-ucc6a7a7c4d/files/per_barcode_metrics.csv",
                                        "per_barcode_metrics_shard": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/metrics_shard.bmsf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/metrics_shard.bmsf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/metrics_shard.bmsf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/metrics_shard.bmsf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/metrics_shard.bmsf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/metrics_shard.bmsf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/metrics_shard.bmsf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/metrics_shard.bmsf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/metrics_shard.bmsf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/metrics_shard.bmsf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/metrics_shard.bmsf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/metrics_shard.bmsf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/metrics_shard.bmsf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/metrics_shard.bmsf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/metrics_shard.bmsf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/metrics_shard.bmsf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/metrics_shard.bmsf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/metrics_shard.bmsf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/metrics_shard.bmsf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/metrics_shard.bmsf",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/metrics_shard.bmsf"
                                        ],
                                        "possorted_genome_bam": null,
                                        "possorted_genome_bam_index": null,
                                        "raw_gene_bc_matrices_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0-ucc6a7a7c4d/files/raw_feature_bc_matrix.h5",
                                        "raw_gene_bc_matrices_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_MATRIX_MARKET/fork0/chnk0-ucc6a7a7c4d/files/raw_feature_bc_matrix",
                                        "read_chunks": [
                                            {
                                                "chemistry": {
                                                    "barcode": [
                                                        {
                                                            "kind": "gel_bead",
                                                            "length": 16,
                                                            "offset": 0,
                                                            "read_type": "R1",
                                                            "whitelist": "737K-august-2016"
                                                        }
                                                    ],
                                                    "description": "Single Cell 5' R2-only",
                                                    "endedness": "five_prime",
                                                    "name": "SC5P-R2",
                                                    "rna": {
                                                        "length": null,
                                                        "min_length": null,
                                                        "offset": 0,
                                                        "read_type": "R2"
                                                    },
                                                    "rna2": null,
                                                    "strandedness": "-",
                                                    "umi": {
                                                        "length": 10,
                                                        "min_length": null,
                                                        "offset": 16,
                                                        "read_type": "R1"
                                                    }
                                                },
                                                "chunk_id": 0,
                                                "fastq_id": "dimitri_RNA",
                                                "fastqs": {
                                                    "i1": null,
                                                    "i2": null,
                                                    "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                                    "r1_interleaved": false,
                                                    "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                                },
                                                "gem_group": 1,
                                                "library_id": 0,
                                                "library_type": "Gene Expression",
                                                "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                                "read_lengths": {},
                                                "subsample_rate": null
                                            }
                                        ],
                                        "read_shards": {
                                            "corrected_reads": [
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/valid_shard.shard"
                                            ],
                                            "invalid_reads": [
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/invalid_shard.shard"
                                            ],
                                            "valid_reads": [
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c6/files/valid.shard"
                                            ]
                                        },
                                        "sample_assignment_metrics": {
                                            "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/dimitri-multi_summary.json"
                                        },
                                        "sample_barcodes_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/sample_barcodes.json",
                                        "sequencing_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                                        "slfe_feature_reference": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/split-ucc6a7a71c0/files/feature_reference.frf.bincode",
                                        "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MERGE_METRICS/fork0/chnk0-ucc6a7a7d61/files/summary.json",
                                        "target_set_name": null
                                    },
                                    "setup_chunks_outs": {
                                        "barcode_whitelist": "737K-august-2016",
                                        "chemistry_def": {
                                            "barcode": [
                                                {
                                                    "kind": "gel_bead",
                                                    "length": 16,
                                                    "offset": 0,
                                                    "read_type": "R1",
                                                    "whitelist": "737K-august-2016"
                                                }
                                            ],
                                            "description": "Single Cell 5' R2-only",
                                            "endedness": "five_prime",
                                            "name": "SC5P-R2",
                                            "rna": {
                                                "length": null,
                                                "min_length": null,
                                                "offset": 0,
                                                "read_type": "R2"
                                            },
                                            "rna2": null,
                                            "strandedness": "-",
                                            "umi": {
                                                "length": 10,
                                                "min_length": null,
                                                "offset": 16,
                                                "read_type": "R1"
                                            }
                                        },
                                        "chunks": [
                                            {
                                                "chemistry": {
                                                    "barcode": [
                                                        {
                                                            "kind": "gel_bead",
                                                            "length": 16,
                                                            "offset": 0,
                                                            "read_type": "R1",
                                                            "whitelist": "737K-august-2016"
                                                        }
                                                    ],
                                                    "description": "Single Cell 5' R2-only",
                                                    "endedness": "five_prime",
                                                    "name": "SC5P-R2",
                                                    "rna": {
                                                        "length": null,
                                                        "min_length": null,
                                                        "offset": 0,
                                                        "read_type": "R2"
                                                    },
                                                    "rna2": null,
                                                    "strandedness": "-",
                                                    "umi": {
                                                        "length": 10,
                                                        "min_length": null,
                                                        "offset": 16,
                                                        "read_type": "R1"
                                                    }
                                                },
                                                "chunk_id": 0,
                                                "fastq_id": "dimitri_RNA",
                                                "fastqs": {
                                                    "i1": null,
                                                    "i2": null,
                                                    "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                                    "r1_interleaved": false,
                                                    "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                                },
                                                "gem_group": 1,
                                                "library_id": 0,
                                                "library_type": "Gene Expression",
                                                "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                                "read_lengths": {},
                                                "subsample_rate": null
                                            }
                                        ]
                                    },
                                    "target_outs": {
                                        "bait_fasta": null,
                                        "disable_target_umi_filter": true,
                                        "disable_targeted": true,
                                        "probe_set": null,
                                        "rps_limit": null,
                                        "summary": null,
                                        "target_gene_indices": null,
                                        "target_panel": null,
                                        "target_panel_or_probe_set": null,
                                        "target_set_name": null,
                                        "targeting_method": null
                                    }
                                },
                                "vdj_b": {
                                    "assembler_outs": {
                                        "assemblable_reads_per_bc": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/assemblable_reads_per_bc.arp.bincode",
                                        "barcode_support": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/barcode_support.csv",
                                        "barcodes_in_chunks": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk000-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk001-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk002-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk003-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk004-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk005-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk006-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk007-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk008-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk009-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk010-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk011-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk012-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk013-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk014-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk015-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk016-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk017-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk018-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk019-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk020-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk021-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk022-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk023-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk024-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk025-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk026-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk027-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk028-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk029-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk030-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk031-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk032-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk033-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk034-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk035-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk036-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk037-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk038-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk039-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk040-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk041-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk042-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk043-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk044-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk045-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk046-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk047-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk048-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk049-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk050-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk051-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk052-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk053-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk054-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk055-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk056-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk057-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk058-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk059-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk060-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk061-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk062-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk063-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk064-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk065-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk066-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk067-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk068-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk069-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk070-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk071-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk072-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk073-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk074-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk075-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk076-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk077-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk078-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk079-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk080-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk081-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk082-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk083-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk084-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk085-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk086-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk087-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk088-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk089-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk090-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk091-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk092-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk093-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk094-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk095-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk096-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk097-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk098-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk099-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk100-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk101-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk102-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk103-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk104-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk105-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk106-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk107-ucc6a7a72ce/files/barcodes_in_chunk.json"
                                        ],
                                        "contig_annotations": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                                        "contig_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_bam.bam",
                                        "contig_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_bam.bam.bai",
                                        "corrected_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72b0/files/corrected_barcode_counts.json",
                                        "gem_groups": [
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1
                                        ],
                                        "n50_n50_rpu": 288,
                                        "processed_read_pairs": 20716612,
                                        "raw_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72b0/files/raw_barcode_counts.json",
                                        "read_shards": {
                                            "corrected_reads": [
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                                            ],
                                            "invalid_reads": [
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/invalid_shard.shard"
                                            ],
                                            "valid_reads": [
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard"
                                            ]
                                        },
                                        "report": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/report.txt",
                                        "sequencing_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                                        "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/chnk0-ucc6a7a73e1/files/summary.json",
                                        "summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/summary_tsv.tsv",
                                        "total_read_pairs": 56633794,
                                        "umi_summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/umi_summary_tsv.tsv",
                                        "unmapped_sample_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/unmapped_sample_fastq.fastq"
                                    },
                                    "setup_chunks_outs": {
                                        "barcode_whitelist": "737K-august-2016",
                                        "chemistry_def": {
                                            "barcode": [
                                                {
                                                    "kind": "gel_bead",
                                                    "length": 16,
                                                    "offset": 0,
                                                    "read_type": "R1",
                                                    "whitelist": "737K-august-2016"
                                                }
                                            ],
                                            "description": "Single Cell V(D)J R2-only",
                                            "endedness": "five_prime",
                                            "name": "SCVDJ-R2",
                                            "rna": {
                                                "length": null,
                                                "min_length": null,
                                                "offset": 0,
                                                "read_type": "R2"
                                            },
                                            "rna2": null,
                                            "strandedness": "-",
                                            "umi": {
                                                "length": 10,
                                                "min_length": null,
                                                "offset": 16,
                                                "read_type": "R1"
                                            }
                                        },
                                        "chunks": [
                                            {
                                                "chemistry": {
                                                    "barcode": [
                                                        {
                                                            "kind": "gel_bead",
                                                            "length": 16,
                                                            "offset": 0,
                                                            "read_type": "R1",
                                                            "whitelist": "737K-august-2016"
                                                        }
                                                    ],
                                                    "description": "Single Cell V(D)J R2-only",
                                                    "endedness": "five_prime",
                                                    "name": "SCVDJ-R2",
                                                    "rna": {
                                                        "length": null,
                                                        "min_length": null,
                                                        "offset": 0,
                                                        "read_type": "R2"
                                                    },
                                                    "rna2": null,
                                                    "strandedness": "-",
                                                    "umi": {
                                                        "length": 10,
                                                        "min_length": null,
                                                        "offset": 16,
                                                        "read_type": "R1"
                                                    }
                                                },
                                                "chunk_id": 0,
                                                "fastq_id": "dimitri_BCR",
                                                "fastqs": {
                                                    "i1": null,
                                                    "i2": null,
                                                    "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_BCR_S1_L001_R1_001.fastq.gz",
                                                    "r1_interleaved": false,
                                                    "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_BCR_S1_L001_R2_001.fastq.gz"
                                                },
                                                "gem_group": 1,
                                                "library_id": 0,
                                                "library_type": "VDJ",
                                                "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                                "read_lengths": {},
                                                "subsample_rate": null
                                            }
                                        ]
                                    }
                                },
                                "vdj_t": {
                                    "assembler_outs": {
                                        "assemblable_reads_per_bc": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/assemblable_reads_per_bc.arp.bincode",
                                        "barcode_support": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/barcode_support.csv",
                                        "barcodes_in_chunks": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk00-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk01-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk02-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk03-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk04-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk05-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk06-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk07-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk08-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk09-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk10-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk11-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk12-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk13-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk14-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk15-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk16-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk17-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk18-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk19-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk20-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk21-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk22-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk23-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk24-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk25-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk26-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk27-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk28-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk29-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk30-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk31-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk32-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk33-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk34-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk35-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk36-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk37-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk38-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk39-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk40-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk41-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk42-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk43-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk44-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk45-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk46-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk47-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk48-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk49-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk50-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk51-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk52-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk53-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk54-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk55-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk56-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk57-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk58-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk59-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk60-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk61-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk62-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk63-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk64-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk65-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk66-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk67-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk68-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk69-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk70-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk71-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk72-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk73-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk74-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk75-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk76-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk77-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk78-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk79-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk80-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk81-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk82-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk83-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk84-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk85-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk86-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk87-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk88-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk89-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk90-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk91-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk92-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk93-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk94-ucc6a7a72e6/files/barcodes_in_chunk.json"
                                        ],
                                        "contig_annotations": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                                        "contig_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_bam.bam",
                                        "contig_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_bam.bam.bai",
                                        "corrected_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72c2/files/corrected_barcode_counts.json",
                                        "gem_groups": [
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1,
                                            1
                                        ],
                                        "n50_n50_rpu": 2159,
                                        "processed_read_pairs": 46574590,
                                        "raw_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72c2/files/raw_barcode_counts.json",
                                        "read_shards": {
                                            "corrected_reads": [
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                                            ],
                                            "invalid_reads": [
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/invalid_shard.shard",
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/invalid_shard.shard"
                                            ],
                                            "valid_reads": [
                                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard"
                                            ]
                                        },
                                        "report": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/report.txt",
                                        "sequencing_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                                        "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/chnk0-ucc6a7a7409/files/summary.json",
                                        "summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/summary_tsv.tsv",
                                        "total_read_pairs": 58185432,
                                        "umi_summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/umi_summary_tsv.tsv",
                                        "unmapped_sample_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/unmapped_sample_fastq.fastq"
                                    },
                                    "setup_chunks_outs": {
                                        "barcode_whitelist": "737K-august-2016",
                                        "chemistry_def": {
                                            "barcode": [
                                                {
                                                    "kind": "gel_bead",
                                                    "length": 16,
                                                    "offset": 0,
                                                    "read_type": "R1",
                                                    "whitelist": "737K-august-2016"
                                                }
                                            ],
                                            "description": "Single Cell V(D)J R2-only",
                                            "endedness": "five_prime",
                                            "name": "SCVDJ-R2",
                                            "rna": {
                                                "length": null,
                                                "min_length": null,
                                                "offset": 0,
                                                "read_type": "R2"
                                            },
                                            "rna2": null,
                                            "strandedness": "-",
                                            "umi": {
                                                "length": 10,
                                                "min_length": null,
                                                "offset": 16,
                                                "read_type": "R1"
                                            }
                                        },
                                        "chunks": [
                                            {
                                                "chemistry": {
                                                    "barcode": [
                                                        {
                                                            "kind": "gel_bead",
                                                            "length": 16,
                                                            "offset": 0,
                                                            "read_type": "R1",
                                                            "whitelist": "737K-august-2016"
                                                        }
                                                    ],
                                                    "description": "Single Cell V(D)J R2-only",
                                                    "endedness": "five_prime",
                                                    "name": "SCVDJ-R2",
                                                    "rna": {
                                                        "length": null,
                                                        "min_length": null,
                                                        "offset": 0,
                                                        "read_type": "R2"
                                                    },
                                                    "rna2": null,
                                                    "strandedness": "-",
                                                    "umi": {
                                                        "length": 10,
                                                        "min_length": null,
                                                        "offset": 16,
                                                        "read_type": "R1"
                                                    }
                                                },
                                                "chunk_id": 0,
                                                "fastq_id": "dimitri_TCR",
                                                "fastqs": {
                                                    "i1": null,
                                                    "i2": null,
                                                    "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_TCR_S1_L001_R1_001.fastq.gz",
                                                    "r1_interleaved": false,
                                                    "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_TCR_S1_L001_R2_001.fastq.gz"
                                                },
                                                "gem_group": 1,
                                                "library_id": 0,
                                                "library_type": "VDJ",
                                                "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                                "read_lengths": {},
                                                "subsample_rate": null
                                            }
                                        ]
                                    }
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_t_clonotype",
                            "type": "SC_VDJ_CLONOTYPE_ASSIGNER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "airr_rearrangement": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0-ucc6a7a7cdd/files/airr_annotations.tsv",
                                "all_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.csv",
                                "all_contig_annotations_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.json",
                                "clonotypes_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd5/files/clonotypes.csv",
                                "concat_ref_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.bam",
                                "concat_ref_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.bam.bai",
                                "concat_ref_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.fasta",
                                "concat_ref_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.fasta.fai",
                                "consensus_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus_annotations.csv",
                                "consensus_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd7/files/consensus.bam",
                                "consensus_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd7/files/consensus.bam.bai",
                                "consensus_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus.fasta",
                                "consensus_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus.fasta.fai",
                                "disable_vloupe": false,
                                "donor_ref_fa": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/donor_ref.fa",
                                "enclone_output": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/enclone_output.pb",
                                "filtered_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_annotations.csv",
                                "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/summary.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_clonotype",
                            "type": "SC_VDJ_CLONOTYPE_ASSIGNER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "airr_rearrangement": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0-ucc6a7a7ce7/files/airr_annotations.tsv",
                                "all_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd8/files/all_contig_annotations.csv",
                                "all_contig_annotations_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd8/files/all_contig_annotations.json",
                                "clonotypes_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd7/files/clonotypes.csv",
                                "concat_ref_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.bam",
                                "concat_ref_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.bam.bai",
                                "concat_ref_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta",
                                "concat_ref_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta.fai",
                                "consensus_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus_annotations.csv",
                                "consensus_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd8/files/consensus.bam",
                                "consensus_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd8/files/consensus.bam.bai",
                                "consensus_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus.fasta",
                                "consensus_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus.fasta.fai",
                                "disable_vloupe": false,
                                "donor_ref_fa": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/donor_ref.fa",
                                "enclone_output": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/enclone_output.pb",
                                "filtered_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_annotations.csv",
                                "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/summary.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "multi_reporter",
                            "type": "MULTI_REPORTER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "antibody_histograms": null,
                                "barcode_rank_plots": {
                                    "Gene Expression": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/GENERATE_LIBRARY_PLOTS/fork0/chnk0-ucc6a7a7d79/files/Gene Expression_barcode_rank_plot.json"
                                },
                                "cloupe": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/CHOOSE_CLOUPE/fork0/chnk0-ucc6a7a7dbf/files/cloupe.cloupe",
                                "cmo_tsne_plot": null,
                                "count_summary": {
                                    "feature_reference": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/feature_reference.csv",
                                    "metrics_summary_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/metrics_summary_csv.csv",
                                    "metrics_summary_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/metrics_summary_json.json",
                                    "web_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/web_summary.html",
                                    "ws_data": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/ws_data.json"
                                },
                                "jibes_biplot_histogram": null,
                                "vdj_b_report": {
                                    "annotations_bed": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/annotations_bed.bed",
                                    "cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/cell_barcodes.json",
                                    "contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fasta.fasta",
                                    "contig_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fasta.fasta.fai",
                                    "contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fastq.fastq",
                                    "filtered_contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_fasta.fasta",
                                    "filtered_contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_fastq.fastq",
                                    "metrics_summary_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/metrics_summary_csv.csv",
                                    "metrics_summary_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/metrics_summary_json.json",
                                    "productive_cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/paired_cell_barcodes.json",
                                    "receptor": "IG",
                                    "vdj_contig_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_PROTO/fork0/chnk0-ucc6a7a7cea/files/vdj_contig_info.pb",
                                    "vloupe": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/VLOUPE_PREPROCESS/fork0/chnk0-ucc6a7a7cd7/files/output_for_vloupe.vloupe",
                                    "web_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/web_summary.html",
                                    "web_summary_data": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/web_summary_data.json"
                                },
                                "vdj_t_report": {
                                    "annotations_bed": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/annotations_bed.bed",
                                    "cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/cell_barcodes.json",
                                    "contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fasta.fasta",
                                    "contig_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fasta.fasta.fai",
                                    "contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fastq.fastq",
                                    "filtered_contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_fasta.fasta",
                                    "filtered_contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_fastq.fastq",
                                    "metrics_summary_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/metrics_summary_csv.csv",
                                    "metrics_summary_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/metrics_summary_json.json",
                                    "productive_cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/paired_cell_barcodes.json",
                                    "receptor": "TR",
                                    "vdj_contig_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_PROTO/fork0/chnk0-ucc6a7a7ce7/files/vdj_contig_info.pb",
                                    "vloupe": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/VLOUPE_PREPROCESS/fork0/chnk0-ucc6a7a7cd5/files/output_for_vloupe.vloupe",
                                    "web_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/web_summary.html",
                                    "web_summary_data": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/web_summary_data.json"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "count_analyzer",
                            "type": "COUNT_ANALYZER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "antibody_analyzer": null,
                                "crispr_analyzer": null,
                                "rna_analyzer": null,
                                "targeted_analyzer": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "detect_count_chem",
                            "type": "DETECT_CHEMISTRY",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": {
                                "chemistry_type": "SC5P-R2",
                                "is_antibody_only": false
                            },
                            "waiting": false
                        },
                        {
                            "id": "disable_feat",
                            "type": "DISABLE_FEATURE_STAGES",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                            "matchedFork": null,
                            "value": {
                                "disable_antibody": true,
                                "disable_crispr": true,
                                "disable_legacy_stages": true,
                                "disable_library_cloupe": true,
                                "disable_multiplexing": true,
                                "disable_targeted": true
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_ref_out",
                            "type": "VdjRefFolder",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "fasta": {
                                    "donor_regions": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COPY_VDJ_REFERENCE/fork0/chnk0-ucc6a7a7cd7/files/donor_regions.fa",
                                    "regions": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COPY_VDJ_REFERENCE/fork0/chnk0-ucc6a7a7cd7/files/regions.fa"
                                },
                                "reference": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COPY_VDJ_REFERENCE/fork0/chnk0-ucc6a7a7cd7/files/reference.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "sample_analyzer",
                            "type": "map\u003cCOUNT_ANALYZER\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": {
                                    "antibody_analyzer": null,
                                    "crispr_analyzer": null,
                                    "rna_analyzer": {
                                        "analysis": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d8e/files/analysis",
                                        "analysis_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d8e/files/analysis_csv",
                                        "cloupe_matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork_dimitri-multi/join-ucc6a7a7d7a/files/cloupe_matrix_h5.h5",
                                        "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d8e/files/summary.json"
                                    },
                                    "targeted_analyzer": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "sample_reporter",
                            "type": "map\u003cSAMPLE_REPORTER\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": {
                                    "cloupe": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/CLOUPE_PREPROCESS/fork_dimitri-multi/join-ucc6a7a7db5/files/output_for_cloupe.cloupe",
                                    "metrics_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS/fork_dimitri-multi/join-ucc6a7a7db3/files/summary.json",
                                    "sample_tsne_plots": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/GENERATE_SAMPLE_TSNE_PLOTS/fork_dimitri-multi/join-ucc6a7a7d8f/files/sample_tsne_plots.json",
                                    "vdj_b_report": null,
                                    "vdj_t_report": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "sample_outs",
                            "type": "map\u003cSampleSlfeOuts\u003e",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": {
                                    "feature_reference": null,
                                    "target_panel": null,
                                    "sample": "dimitri-multi",
                                    "bam_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_dimitri-multi.bam",
                                    "bam_index_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_dimitri-multi.bam.bai",
                                    "molecule_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/molecule_info_dimitri-multi.h5",
                                    "matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                                    "all_genes_matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix.h5",
                                    "filtered_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_barcodes.csv",
                                    "matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix",
                                    "all_genes_matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix",
                                    "metrics_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_summary.json",
                                    "per_barcode_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_per_barcode_metrics.csv"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "unassigned_bam",
                            "type": "bam",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_unassigned.bam",
                            "waiting": false
                        },
                        {
                            "id": "unassigned_bai",
                            "type": "bam.bai",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_unassigned.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "multi_web_summary_json",
                            "type": "WRITE_MULTI_WEB_SUMMARY_JSON",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "metrics_summary_csv": {
                                    "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/WRITE_MULTI_WEB_SUMMARY_JSON/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_metric_summary_csv.json.csv"
                                },
                                "web_summary_json": {
                                    "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/WRITE_MULTI_WEB_SUMMARY_JSON/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_web_summary_data.json"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "multi_web_summaries",
                            "type": "map\u003chtml\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_WEB_SUMMARY/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_web_summary.html"
                            },
                            "waiting": false
                        },
                        {
                            "id": "multi_metrics_csvs",
                            "type": "map\u003ccsv\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_WEB_SUMMARY/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_metrics_summary.csv"
                            },
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COPY_VDJ_REFERENCE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "COPY_VDJ_REFERENCE",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COPY_VDJ_REFERENCE",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COPY_VDJ_REFERENCE",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COPY_VDJ_REFERENCE",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COPY_VDJ_REFERENCE/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COPY_VDJ_REFERENCE/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COPY_VDJ_REFERENCE/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COPY_VDJ_REFERENCE/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
                            "waiting": false
                        },
                        {
                            "id": "vdj_t_donor_ref_fa",
                            "type": "fa",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/donor_ref.fa",
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_donor_ref_fa",
                            "type": "fa",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/donor_ref.fa",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "vdj_reference",
                            "type": "VdjRefFolder",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "fasta": {
                                    "donor_regions": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COPY_VDJ_REFERENCE/fork0/chnk0-ucc6a7a7cd7/files/donor_regions.fa",
                                    "regions": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COPY_VDJ_REFERENCE/fork0/chnk0-ucc6a7a7cd7/files/regions.fa"
                                },
                                "reference": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COPY_VDJ_REFERENCE/fork0/chnk0-ucc6a7a7cd7/files/reference.json"
                            },
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COPY_VDJ_REFERENCE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COPY_VDJ_REFERENCE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COPY_VDJ_REFERENCE"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian copy_vdj_reference"
    },
    {
        "name": "COUNT_ANALYZER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_matrices_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ccd/files/molecule_info_non_multiplexed.h5",
                            "waiting": false
                        },
                        {
                            "id": "count_inputs",
                            "type": "CounterInputs",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "aligner": null,
                                "cell_calling_config": {
                                    "cell_barcodes": null,
                                    "disable_ab_aggregate_detection": false,
                                    "force_cells": null,
                                    "override_library_types": null,
                                    "override_mode": null,
                                    "recovered_cells": null
                                },
                                "custom_chemistry_def": null,
                                "enforce_library_concordance": true,
                                "feature_reference": null,
                                "force_sample_barcodes": null,
                                "gene_index": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_COUNT_INPUTS/WRITE_GENE_INDEX/fork0/chnk0-ucc6a7a71a3/files/gene_index.json",
                                "include_introns": false,
                                "initial_reads": null,
                                "min_assignment_confidence": null,
                                "no_bam": false,
                                "no_target_umi_filter": false,
                                "primers": [
                                    {
                                        "name": "P5",
                                        "seq": "AATGATACGGCGACCACCGAGATCT"
                                    },
                                    {
                                        "name": "P7",
                                        "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                    },
                                    {
                                        "name": "R1",
                                        "seq": "ACACTCTTTCCCTACACGACG"
                                    },
                                    {
                                        "name": "R2",
                                        "seq": "GTGACTGGAGTTCAGACGTGTG"
                                    },
                                    {
                                        "name": "switch_oligo",
                                        "seq": "AAGCAGTGGTATCAACGCAGAGTACATGGG"
                                    },
                                    {
                                        "name": "polyA",
                                        "seq": "AAAAAAAAAAAAAAAAAAAA"
                                    }
                                ],
                                "r1_length": null,
                                "r2_length": null,
                                "reference_path": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_RNA",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "Gene Expression",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_RNA"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "subsample_rate": null,
                                "targeting_method": null,
                                "trim_polya_min_score": 20,
                                "trim_tso_min_score": 20
                            },
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "aggregate_barcodes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/aggregate_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "counter_metrics_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MERGE_METRICS/fork0/chnk0-ucc6a7a7d61/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "disable_rna",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "disable_crispr",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "disable_antibody",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "disable_targeted",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "no_secondary_analysis",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "parse_target_features",
                            "type": "PARSE_TARGET_FEATURES",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "bait_fasta": null,
                                "disable_target_umi_filter": true,
                                "disable_targeted": true,
                                "probe_set": null,
                                "rps_limit": null,
                                "summary": null,
                                "target_gene_indices": null,
                                "target_panel": null,
                                "target_panel_or_probe_set": null,
                                "target_set_name": null,
                                "targeting_method": null
                            },
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "rna_analyzer",
                            "type": "SC_RNA_ANALYZER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "crispr_analyzer",
                            "type": "_CRISPR_ANALYZER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "antibody_analyzer",
                            "type": "_ANTIBODY_ANALYZER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "targeted_analyzer",
                            "type": "_TARGETED_ANALYZER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "SC_RNA_ANALYZER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_matrices_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "no_secondary_analysis",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "use_genes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip_multigenome_analysis",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_batch_correction",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "aggr_library_info",
                            "type": "map[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_analysis_bcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pca_bcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pca_genes",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_principal_comps",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_knn",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_alpha",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_sigma",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_realign_panorama",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_clusters",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "graphclust_neighbors",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_a",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_b",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "graphclust_resolution",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_perplexity",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_input_pcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_theta",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "exclude_genes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "use_bcs",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_max_dims",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_max_iter",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_stop_lying_iter",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_mom_switch_iter",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_n_neighbors",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_input_pcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_max_dims",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_min_dist",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_metric",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "analysis",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "analysis_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cloupe_matrix_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "ANALYZER_PREFLIGHT",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "skip",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "filtered_matrices_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "use_genes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "exclude_genes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "use_bcs",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_analysis_bcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pca_bcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pca_genes",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_principal_comps",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_batch_correction",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "cbc_knn",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_alpha",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_sigma",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_realign_panorama",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_clusters",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "graphclust_neighbors",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_a",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_b",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_perplexity",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_input_pcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_max_dims",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_max_iter",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_stop_lying_iter",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_mom_switch_iter",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_theta",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_n_neighbors",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_input_pcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_max_dims",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_min_dist",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_metric",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip_multigenome_analysis",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "skip",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "disable_run_pca",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "disable_correct_chemistry_batch",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip_multigenome_analysis",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/analyzer/analyzer_preflight"
    },
    {
        "name": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "pca_h5_list",
                            "type": "h5[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                null,
                                null
                            ],
                            "waiting": false
                        },
                        {
                            "id": "pca_csv_list",
                            "type": "path[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                null,
                                null
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "pca_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_PCA",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/analyzer/choose_dimension_reduction_output"
    },
    {
        "name": "COMBINE_CLUSTERING",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.COMBINE_CLUSTERING",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/COMBINE_CLUSTERING",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/COMBINE_CLUSTERING",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "kmeans_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "kmeans_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "graphclust_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "graphclust_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "clustering_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "clustering_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.COMBINE_CLUSTERING"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.COMBINE_CLUSTERING"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.COMBINE_CLUSTERING"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/analyzer/combine_clustering"
    },
    {
        "name": "CORRECT_CHEMISTRY_BATCH",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "dimred_matrix",
                            "type": "pickle",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "matrix_barcode_feature_info",
                            "type": "pickle",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_knn",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_alpha",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_sigma",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_realign_panorama",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "batch_score_before_correction",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "batch_score_after_correction",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "aligned_pca_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "aligned_pca_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_FBPCA",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/analyzer/correct_chemistry_batch"
    },
    {
        "name": "PREPROCESS_MATRIX",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "use_genes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "exclude_genes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "use_bcs",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_bcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "cloupe_matrix_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "preprocessed_matrix_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_multi_genome",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/analyzer/preprocess_matrix"
    },
    {
        "name": "RUN_DIFFERENTIAL_EXPRESSION",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "clustering_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_clusters",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "diffexp_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "diffexp_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.COMBINE_CLUSTERING",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_ana martian diff_exp_stage"
    },
    {
        "name": "RUN_FBPCA",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_FBPCA",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_FBPCA",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_FBPCA",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_FBPCA/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_FBPCA/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_FBPCA/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "dimred_matrix",
                            "type": "pickle",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "matrix_barcode_feature_info",
                            "type": "pickle",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_FBPCA"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_FBPCA"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/analyzer/run_fbpca"
    },
    {
        "name": "RUN_GRAPH_CLUSTERING",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_neighbors",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_a",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_b",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "input_pcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_bcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "similarity_type",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "nn",
                            "waiting": false
                        },
                        {
                            "id": "balltree_leaf_size",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "resolution",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "clusters_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "clusters_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_ana martian graph_clustering_stage"
    },
    {
        "name": "RUN_KMEANS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_clusters",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_bcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "kmeans_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "kmeans_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/analyzer/run_kmeans"
    },
    {
        "name": "RUN_MULTIGENOME_ANALYSIS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_matrices_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "is_multi_genome",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "multi_genome_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "multi_genome_json",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "multi_genome_summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/analyzer/run_multigenome_analysis"
    },
    {
        "name": "RUN_PCA",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_PCA",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_PCA",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_PCA",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_PCA/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_PCA/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_PCA/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_bcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_genes",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "pca_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_PCA"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_PCA"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_ana martian pca_stage"
    },
    {
        "name": "RUN_TSNE",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_TSNE",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_TSNE",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_TSNE/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_TSNE/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_TSNE/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perplexity",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "input_pcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_dims",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_iter",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "stop_lying_iter",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "mom_switch_iter",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "theta",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "tsne_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_ana martian tsne_stage"
    },
    {
        "name": "RUN_UMAP",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_UMAP",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_UMAP",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_UMAP/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_UMAP/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_UMAP/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "n_neighbors",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "input_pcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_dims",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "min_dist",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "metric",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "umap_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_ana martian umap_stage"
    },
    {
        "name": "SUMMARIZE_ANALYSIS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "clustering_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "diffexp_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "pca_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "clustering_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "diffexp_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "multi_genome_summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "multi_genome_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "multi_genome_json",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_multi_genome",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_batch_correction",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "batch_score_before_correction",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "batch_score_after_correction",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "analysis",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "analysis_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.COMBINE_CLUSTERING",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/analyzer/summarize_analysis"
    },
    {
        "name": "_ANTIBODY_ANALYZER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_ANTIBODY_ANALYZER",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_ANTIBODY_ANALYZER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_ANTIBODY_ANALYZER/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_ANTIBODY_ANALYZER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_ANTIBODY_ANALYZER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "aggregate_barcodes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/aggregate_barcodes.csv",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "antibody_analysis",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "antibody_histograms_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER.CALL_ANTIBODIES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER.SUMMARIZE_ANTIBODY_ANALYSIS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CALL_ANTIBODIES",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER.CALL_ANTIBODIES",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_ANTIBODY_ANALYZER/CALL_ANTIBODIES",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_ANTIBODY_ANALYZER/CALL_ANTIBODIES",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_ANTIBODY_ANALYZER/CALL_ANTIBODIES/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_ANTIBODY_ANALYZER/CALL_ANTIBODIES/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_ANTIBODY_ANALYZER/CALL_ANTIBODIES/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "antibody_histograms_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER.CALL_ANTIBODIES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER.CALL_ANTIBODIES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/feature/call_antibodies"
    },
    {
        "name": "SUMMARIZE_ANTIBODY_ANALYSIS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER.SUMMARIZE_ANTIBODY_ANALYSIS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_ANTIBODY_ANALYZER/SUMMARIZE_ANTIBODY_ANALYSIS",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_ANTIBODY_ANALYZER/SUMMARIZE_ANTIBODY_ANALYSIS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_ANTIBODY_ANALYZER/SUMMARIZE_ANTIBODY_ANALYSIS/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_ANTIBODY_ANALYZER/SUMMARIZE_ANTIBODY_ANALYSIS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_ANTIBODY_ANALYZER/SUMMARIZE_ANTIBODY_ANALYSIS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "aggregate_barcodes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/aggregate_barcodes.csv",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "antibody_analysis",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER.SUMMARIZE_ANTIBODY_ANALYSIS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._ANTIBODY_ANALYZER.SUMMARIZE_ANTIBODY_ANALYSIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/feature/summarize_antibody_analysis"
    },
    {
        "name": "_CRISPR_ANALYZER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "counter_metrics_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MERGE_METRICS/fork0/chnk0-ucc6a7a7d61/files/summary.json",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "cells_per_protospacer",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "crispr_analysis_metrics",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "crispr_analysis",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CALL_PROTOSPACERS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER/CALL_PROTOSPACERS",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER/CALL_PROTOSPACERS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER/CALL_PROTOSPACERS/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER/CALL_PROTOSPACERS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER/CALL_PROTOSPACERS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "counter_metrics_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MERGE_METRICS/fork0/chnk0-ucc6a7a7d61/files/summary.json",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "protospacer_calls_summary",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_calls_per_cell",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_call_metrics_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cells_per_protospacer",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_umi_thresholds_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_umi_thresholds_csv",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/feature/call_protospacers"
    },
    {
        "name": "SUMMARIZE_CRISPR_ANALYSIS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_calls_summary",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_calls_per_cell",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cells_per_protospacer",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_umi_thresholds_csv",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_umi_thresholds_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perturbation_efficiencies_by_feature",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perturbations_efficiencies_by_target",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perturbation_effects_by_feature",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perturbation_effects_by_target",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "crispr_analysis",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/feature/summarize_crispr_analysis"
    },
    {
        "name": "_PERTURBATIONS_BY_FEATURE",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "protospacer_calls_per_cell",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "by_feature",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "ignore_multiples",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "perturbation_efficiencies",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perturbation_effects_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/feature/measure_perturbations"
    },
    {
        "name": "_PERTURBATIONS_BY_TARGET",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "protospacer_calls_per_cell",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "by_feature",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "ignore_multiples",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "perturbation_efficiencies",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perturbation_effects_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/feature/measure_perturbations"
    },
    {
        "name": "_TARGETED_ANALYZER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ccd/files/molecule_info_non_multiplexed.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "basic_counter_summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MERGE_METRICS/fork0/chnk0-ucc6a7a7d61/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "targeted_summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "targeted_analysis_metrics",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "per_feature_metrics_csv",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.CALCULATE_TARGETED_METRICS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUMMARIZE_TARGETED_ANALYSIS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CALCULATE_TARGETED_METRICS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.CALCULATE_TARGETED_METRICS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER/CALCULATE_TARGETED_METRICS",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER/CALCULATE_TARGETED_METRICS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER/CALCULATE_TARGETED_METRICS/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER/CALCULATE_TARGETED_METRICS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER/CALCULATE_TARGETED_METRICS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ccd/files/molecule_info_non_multiplexed.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "basic_counter_summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MERGE_METRICS/fork0/chnk0-ucc6a7a7d61/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "targeted_summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.CALCULATE_TARGETED_METRICS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "per_feature_metrics_csv",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.CALCULATE_TARGETED_METRICS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.CALCULATE_TARGETED_METRICS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/targeted/calculate_targeted_metrics"
    },
    {
        "name": "SUBSAMPLE_OFF_TARGET_READS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_OFF_TARGET_READS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER/SUBSAMPLE_OFF_TARGET_READS",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER/SUBSAMPLE_OFF_TARGET_READS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER/SUBSAMPLE_OFF_TARGET_READS/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER/SUBSAMPLE_OFF_TARGET_READS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER/SUBSAMPLE_OFF_TARGET_READS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ccd/files/molecule_info_non_multiplexed.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "target_mode",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "offtarget",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_OFF_TARGET_READS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "merged_metrics",
                            "type": "pickle",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_OFF_TARGET_READS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_OFF_TARGET_READS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/counter/subsample_reads"
    },
    {
        "name": "SUBSAMPLE_ON_TARGET_READS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_ON_TARGET_READS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER/SUBSAMPLE_ON_TARGET_READS",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER/SUBSAMPLE_ON_TARGET_READS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER/SUBSAMPLE_ON_TARGET_READS/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER/SUBSAMPLE_ON_TARGET_READS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER/SUBSAMPLE_ON_TARGET_READS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ccd/files/molecule_info_non_multiplexed.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "target_mode",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "ontarget",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_ON_TARGET_READS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "merged_metrics",
                            "type": "pickle",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_ON_TARGET_READS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_ON_TARGET_READS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/counter/subsample_reads"
    },
    {
        "name": "SUMMARIZE_TARGETED_ANALYSIS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUMMARIZE_TARGETED_ANALYSIS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER/SUMMARIZE_TARGETED_ANALYSIS",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER/SUMMARIZE_TARGETED_ANALYSIS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER/SUMMARIZE_TARGETED_ANALYSIS/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER/SUMMARIZE_TARGETED_ANALYSIS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/COUNT_ANALYZER/_TARGETED_ANALYZER/SUMMARIZE_TARGETED_ANALYSIS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "summaries",
                            "type": "json[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                null,
                                null,
                                null
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUMMARIZE_TARGETED_ANALYSIS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.CALCULATE_TARGETED_METRICS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUMMARIZE_TARGETED_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_OFF_TARGET_READS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUMMARIZE_TARGETED_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_ON_TARGET_READS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUMMARIZE_TARGETED_ANALYSIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/targeted/summarize_targeted_analysis"
    },
    {
        "name": "DISABLE_FEATURE_STAGES",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/DISABLE_FEATURE_STAGES",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/DISABLE_FEATURE_STAGES",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/DISABLE_FEATURE_STAGES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/DISABLE_FEATURE_STAGES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/DISABLE_FEATURE_STAGES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/DISABLE_FEATURE_STAGES/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_def",
                            "type": "map[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "fastq_id": "dimitri_RNA",
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": 1,
                                    "lanes": null,
                                    "library_type": "Gene Expression",
                                    "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                    "sample_indices": null,
                                    "sample_names": [
                                        "dimitri_RNA"
                                    ],
                                    "subsample_rate": null,
                                    "target_set": null,
                                    "target_set_name": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "disable_multi",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "disable_count",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "in_disable_targeted",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "is_pd",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "sample_outs",
                            "type": "map\u003cSampleSlfeOuts\u003e",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": {
                                    "feature_reference": null,
                                    "target_panel": null,
                                    "sample": "dimitri-multi",
                                    "bam_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_dimitri-multi.bam",
                                    "bam_index_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_dimitri-multi.bam.bai",
                                    "molecule_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/molecule_info_dimitri-multi.h5",
                                    "matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                                    "all_genes_matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix.h5",
                                    "filtered_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_barcodes.csv",
                                    "matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix",
                                    "all_genes_matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix",
                                    "metrics_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_summary.json",
                                    "per_barcode_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_per_barcode_metrics.csv"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "multi_graph",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG/fork0/chnk0-ucc6a7a7197/files/multi_graph.json",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "disable_crispr",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "disable_antibody",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "disable_multiplexing",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "disable_targeted",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "disable_legacy_stages",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "disable_library_cloupe",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/common/disable_feature_stages"
    },
    {
        "name": "MAKE_FULL_CONFIG",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MAKE_FULL_CONFIG",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MAKE_FULL_CONFIG",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MAKE_FULL_CONFIG/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MAKE_FULL_CONFIG/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MAKE_FULL_CONFIG/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "vdj_t_input",
                            "type": "VdjInputsCS",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_TCR",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "VDJ",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_TCR"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "denovo": false,
                                "force_cells": null,
                                "inner_enrichment_primers": null,
                                "chain_type": "TR",
                                "physical_library_id": "VDJT_1",
                                "r1_length": null,
                                "r2_length": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_input",
                            "type": "VdjInputsCS",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_BCR",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "VDJ",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_BCR"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "denovo": false,
                                "force_cells": null,
                                "inner_enrichment_primers": null,
                                "chain_type": "IG",
                                "physical_library_id": "VDJB_1",
                                "r1_length": null,
                                "r2_length": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "basic_config",
                            "type": "BasicPipelineConfig",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": {
                                "disable_count": false,
                                "disable_multi": false,
                                "disable_multi_count": false,
                                "disable_vdj": false
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "config",
                            "type": "FullPipelineConfig",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "disable_count": false,
                                "disable_multi": false,
                                "disable_multi_count": false,
                                "disable_vdj_b": false,
                                "disable_vdj_t": false,
                                "has_no_vdj_ref": false
                            },
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "_MAKE_VDJ_CONFIG",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MAKE_FULL_CONFIG/_MAKE_VDJ_CONFIG",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MAKE_FULL_CONFIG/_MAKE_VDJ_CONFIG",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MAKE_FULL_CONFIG/_MAKE_VDJ_CONFIG/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MAKE_FULL_CONFIG/_MAKE_VDJ_CONFIG/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MAKE_FULL_CONFIG/_MAKE_VDJ_CONFIG/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MAKE_FULL_CONFIG/_MAKE_VDJ_CONFIG/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "vdj_t_input",
                            "type": "VdjInputsCS",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_TCR",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "VDJ",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_TCR"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "denovo": false,
                                "force_cells": null,
                                "inner_enrichment_primers": null,
                                "chain_type": "TR",
                                "physical_library_id": "VDJT_1",
                                "r1_length": null,
                                "r2_length": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_input",
                            "type": "VdjInputsCS",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_BCR",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "VDJ",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_BCR"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "denovo": false,
                                "force_cells": null,
                                "inner_enrichment_primers": null,
                                "chain_type": "IG",
                                "physical_library_id": "VDJB_1",
                                "r1_length": null,
                                "r2_length": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
                            "waiting": false
                        },
                        {
                            "id": "disable_vdj",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "disable_vdj_b",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "disable_vdj_t",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "has_no_vdj_ref",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/common/make_vdj_config"
    },
    {
        "name": "MULTI_CHEMISTRY_DETECTOR",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "multi_gem_well_inputs",
                            "type": "GemWellChemistryInputs[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "common_inputs": {
                                        "multi_config_sha": "441f739f093e36c43f57328492fe5aa9703c212f8c5a330ff0ef60c31a5f08c4",
                                        "sample_desc": "",
                                        "sample_id": "dimitri-multi"
                                    },
                                    "count_inputs": {
                                        "chemistry": "auto",
                                        "custom_chemistry_def": null,
                                        "enforce_library_concordance": true,
                                        "feature_reference": null,
                                        "r1_length": null,
                                        "r2_length": null,
                                        "reference_path": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                                        "sample_def": [
                                            {
                                                "fastq_id": "dimitri_RNA",
                                                "fastq_mode": "ILMN_BCL2FASTQ",
                                                "gem_group": 1,
                                                "lanes": null,
                                                "library_type": "Gene Expression",
                                                "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                                "sample_indices": null,
                                                "sample_names": [
                                                    "dimitri_RNA"
                                                ],
                                                "subsample_rate": null,
                                                "target_set": null,
                                                "target_set_name": null
                                            }
                                        ]
                                    },
                                    "vdj_inputs": [
                                        {
                                            "chain_type": "IG",
                                            "chemistry": "SCVDJ_auto",
                                            "custom_chemistry_def": null,
                                            "r1_length": null,
                                            "r2_length": null,
                                            "sample_def": [
                                                {
                                                    "fastq_id": "dimitri_BCR",
                                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                                    "gem_group": 1,
                                                    "lanes": null,
                                                    "library_type": "VDJ",
                                                    "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                                    "sample_indices": null,
                                                    "sample_names": [
                                                        "dimitri_BCR"
                                                    ],
                                                    "subsample_rate": null,
                                                    "target_set": null,
                                                    "target_set_name": null
                                                }
                                            ]
                                        },
                                        {
                                            "chain_type": "TR",
                                            "chemistry": "SCVDJ_auto",
                                            "custom_chemistry_def": null,
                                            "r1_length": null,
                                            "r2_length": null,
                                            "sample_def": [
                                                {
                                                    "fastq_id": "dimitri_TCR",
                                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                                    "gem_group": 1,
                                                    "lanes": null,
                                                    "library_type": "VDJ",
                                                    "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                                    "sample_indices": null,
                                                    "sample_names": [
                                                        "dimitri_TCR"
                                                    ],
                                                    "subsample_rate": null,
                                                    "target_set": null,
                                                    "target_set_name": null
                                                }
                                            ]
                                        }
                                    ]
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "vdj_gen_inputs",
                            "type": "VdjGenInputs",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": {
                                "reference_path": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                                "vdj_reference_path": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0"
                            },
                            "waiting": false
                        },
                        {
                            "id": "basic_config",
                            "type": "BasicPipelineConfig",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": {
                                "disable_count": false,
                                "disable_multi": false,
                                "disable_multi_count": false,
                                "disable_vdj": false
                            },
                            "waiting": false
                        },
                        {
                            "id": "count_allowed_chems",
                            "type": "string[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": [
                                "auto",
                                "custom",
                                "threeprime",
                                "fiveprime",
                                "SC3P_auto",
                                "SC5P_auto",
                                "SC3Pv1",
                                "SC3Pv2",
                                "SC3Pv3",
                                "SC3Pv3LT",
                                "SC3Pv3HT",
                                "SC5P-PE",
                                "SC5P-R1",
                                "SC5P-R2",
                                "SC5PHT",
                                "SC-FB",
                                "ARC-v1"
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "library_to_chemistry",
                            "type": "map\u003cstring\u003e",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": {
                                "Gene Expression": "SC5P-R2",
                                "VDJ": "SCVDJ-R2"
                            },
                            "waiting": false
                        },
                        {
                            "id": "libraries_to_translate",
                            "type": "string[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": [],
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "legacy",
                            "type": "GemWellDetectChemistry",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": {
                                "check_barcodes_compatibility": {
                                    "libraries_to_translate": []
                                },
                                "detect_count_chem": {
                                    "chemistry_type": "SC5P-R2",
                                    "is_antibody_only": false
                                },
                                "detect_vdj_chem": [
                                    {
                                        "chain_type": "IG",
                                        "chemistry_type": "SCVDJ-R2",
                                        "receptor": "IG"
                                    },
                                    {
                                        "chain_type": "TR",
                                        "chemistry_type": "SCVDJ-R2",
                                        "receptor": "TR"
                                    }
                                ],
                                "sample_defs_count": [
                                    {
                                        "fastq_id": "dimitri_RNA",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "Gene Expression",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_RNA"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ]
                            },
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "COMBINE_GEM_WELL_CHEMISTRIES",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/COMBINE_GEM_WELL_CHEMISTRIES",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/COMBINE_GEM_WELL_CHEMISTRIES",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/COMBINE_GEM_WELL_CHEMISTRIES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/COMBINE_GEM_WELL_CHEMISTRIES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/COMBINE_GEM_WELL_CHEMISTRIES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/COMBINE_GEM_WELL_CHEMISTRIES/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_well_detect_chemistry",
                            "type": "GemWellDetectChemistry[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "check_barcodes_compatibility": {
                                        "libraries_to_translate": []
                                    },
                                    "detect_count_chem": {
                                        "chemistry_type": "SC5P-R2",
                                        "is_antibody_only": false
                                    },
                                    "detect_vdj_chem": [
                                        {
                                            "chain_type": "IG",
                                            "chemistry_type": "SCVDJ-R2",
                                            "receptor": "IG"
                                        },
                                        {
                                            "chain_type": "TR",
                                            "chemistry_type": "SCVDJ-R2",
                                            "receptor": "TR"
                                        }
                                    ],
                                    "sample_defs_count": [
                                        {
                                            "fastq_id": "dimitri_RNA",
                                            "fastq_mode": "ILMN_BCL2FASTQ",
                                            "gem_group": 1,
                                            "lanes": null,
                                            "library_type": "Gene Expression",
                                            "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                            "sample_indices": null,
                                            "sample_names": [
                                                "dimitri_RNA"
                                            ],
                                            "subsample_rate": null,
                                            "target_set": null,
                                            "target_set_name": null
                                        }
                                    ]
                                }
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "library_to_chemistry",
                            "type": "map\u003cstring\u003e",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": {
                                "Gene Expression": "SC5P-R2",
                                "VDJ": "SCVDJ-R2"
                            },
                            "waiting": false
                        },
                        {
                            "id": "libraries_to_translate",
                            "type": "string[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": [],
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "legacy",
                            "type": "GemWellDetectChemistry",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": {
                                "check_barcodes_compatibility": {
                                    "libraries_to_translate": []
                                },
                                "detect_count_chem": {
                                    "chemistry_type": "SC5P-R2",
                                    "is_antibody_only": false
                                },
                                "detect_vdj_chem": [
                                    {
                                        "chain_type": "IG",
                                        "chemistry_type": "SCVDJ-R2",
                                        "receptor": "IG"
                                    },
                                    {
                                        "chain_type": "TR",
                                        "chemistry_type": "SCVDJ-R2",
                                        "receptor": "TR"
                                    }
                                ],
                                "sample_defs_count": [
                                    {
                                        "fastq_id": "dimitri_RNA",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "Gene Expression",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_RNA"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ]
                            },
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian combine_gem_well_chemistries"
    },
    {
        "name": "_GEM_WELL_CHEMISTRY_DETECTOR",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_well_inputs",
                            "type": "GemWellChemistryInputs",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "call": "_GEM_WELL_CHEMISTRY_DETECTOR",
                                "mode": "array",
                                "split": [
                                    {
                                        "common_inputs": {
                                            "multi_config_sha": "441f739f093e36c43f57328492fe5aa9703c212f8c5a330ff0ef60c31a5f08c4",
                                            "sample_desc": "",
                                            "sample_id": "dimitri-multi"
                                        },
                                        "count_inputs": {
                                            "chemistry": "auto",
                                            "custom_chemistry_def": null,
                                            "enforce_library_concordance": true,
                                            "feature_reference": null,
                                            "r1_length": null,
                                            "r2_length": null,
                                            "reference_path": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                                            "sample_def": [
                                                {
                                                    "fastq_id": "dimitri_RNA",
                                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                                    "gem_group": 1,
                                                    "lanes": null,
                                                    "library_type": "Gene Expression",
                                                    "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                                    "sample_indices": null,
                                                    "sample_names": [
                                                        "dimitri_RNA"
                                                    ],
                                                    "subsample_rate": null,
                                                    "target_set": null,
                                                    "target_set_name": null
                                                }
                                            ]
                                        },
                                        "vdj_inputs": [
                                            {
                                                "chain_type": "IG",
                                                "chemistry": "SCVDJ_auto",
                                                "custom_chemistry_def": null,
                                                "r1_length": null,
                                                "r2_length": null,
                                                "sample_def": [
                                                    {
                                                        "fastq_id": "dimitri_BCR",
                                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                                        "gem_group": 1,
                                                        "lanes": null,
                                                        "library_type": "VDJ",
                                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                                        "sample_indices": null,
                                                        "sample_names": [
                                                            "dimitri_BCR"
                                                        ],
                                                        "subsample_rate": null,
                                                        "target_set": null,
                                                        "target_set_name": null
                                                    }
                                                ]
                                            },
                                            {
                                                "chain_type": "TR",
                                                "chemistry": "SCVDJ_auto",
                                                "custom_chemistry_def": null,
                                                "r1_length": null,
                                                "r2_length": null,
                                                "sample_def": [
                                                    {
                                                        "fastq_id": "dimitri_TCR",
                                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                                        "gem_group": 1,
                                                        "lanes": null,
                                                        "library_type": "VDJ",
                                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                                        "sample_indices": null,
                                                        "sample_names": [
                                                            "dimitri_TCR"
                                                        ],
                                                        "subsample_rate": null,
                                                        "target_set": null,
                                                        "target_set_name": null
                                                    }
                                                ]
                                            }
                                        ]
                                    }
                                ],
                                "source": [
                                    {
                                        "common_inputs": {
                                            "__reference__": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG.common_input"
                                        },
                                        "count_inputs": {
                                            "__disabled__": {
                                                "__reference__": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG.basic_config.disable_count"
                                            },
                                            "value": {
                                                "chemistry": {
                                                    "__reference__": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG.count_input.chemistry"
                                                },
                                                "custom_chemistry_def": null,
                                                "enforce_library_concordance": true,
                                                "feature_reference": {
                                                    "__reference__": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG.count_input.feature_reference"
                                                },
                                                "r1_length": {
                                                    "__reference__": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG.count_input.r1_length"
                                                },
                                                "r2_length": {
                                                    "__reference__": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG.count_input.r2_length"
                                                },
                                                "reference_path": {
                                                    "__reference__": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG.count_input.reference_path"
                                                },
                                                "sample_def": {
                                                    "__reference__": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG.count_input.sample_def"
                                                }
                                            }
                                        },
                                        "vdj_inputs": {
                                            "call": "ID.dimitri-multi.SC_MULTI_CS.FULL_VDJ_INPUTS",
                                            "mode": "array",
                                            "merge_value": {
                                                "chain_type": {
                                                    "call": "FULL_VDJ_INPUTS",
                                                    "mode": "array",
                                                    "split": {
                                                        "__reference__": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG.vdj_inputs.chain_type"
                                                    }
                                                },
                                                "chemistry": "SCVDJ_auto",
                                                "custom_chemistry_def": null,
                                                "r1_length": {
                                                    "call": "FULL_VDJ_INPUTS",
                                                    "mode": "array",
                                                    "split": {
                                                        "__reference__": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG.vdj_inputs.r1_length"
                                                    }
                                                },
                                                "r2_length": {
                                                    "call": "FULL_VDJ_INPUTS",
                                                    "mode": "array",
                                                    "split": {
                                                        "__reference__": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG.vdj_inputs.r2_length"
                                                    }
                                                },
                                                "sample_def": {
                                                    "call": "FULL_VDJ_INPUTS",
                                                    "mode": "array",
                                                    "split": {
                                                        "__reference__": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG.vdj_inputs.sample_def"
                                                    }
                                                }
                                            },
                                            "merge_over": {
                                                "ref": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG.vdj_inputs",
                                                "type": "VdjInputs[]"
                                            }
                                        }
                                    }
                                ]
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_gen_inputs",
                            "type": "VdjGenInputs",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": {
                                "reference_path": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                                "vdj_reference_path": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0"
                            },
                            "waiting": false
                        },
                        {
                            "id": "basic_config",
                            "type": "BasicPipelineConfig",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": {
                                "disable_count": false,
                                "disable_multi": false,
                                "disable_multi_count": false,
                                "disable_vdj": false
                            },
                            "waiting": false
                        },
                        {
                            "id": "count_allowed_chems",
                            "type": "string[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": [
                                "auto",
                                "custom",
                                "threeprime",
                                "fiveprime",
                                "SC3P_auto",
                                "SC5P_auto",
                                "SC3Pv1",
                                "SC3Pv2",
                                "SC3Pv3",
                                "SC3Pv3LT",
                                "SC3Pv3HT",
                                "SC5P-PE",
                                "SC5P-R1",
                                "SC5P-R2",
                                "SC5PHT",
                                "SC-FB",
                                "ARC-v1"
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "sample_defs_count",
                            "type": "map[][]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                [
                                    {
                                        "fastq_id": "dimitri_RNA",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "Gene Expression",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_RNA"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ]
                            ],
                            "waiting": false
                        },
                        {
                            "id": "detect_count_chem",
                            "type": "DETECT_CHEMISTRY[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "chemistry_type": "SC5P-R2",
                                    "is_antibody_only": false
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "detect_vdj_chem",
                            "type": "VDJ_CHEMISTRY_DETECTOR[][]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                [
                                    {
                                        "chain_type": "IG",
                                        "chemistry_type": "SCVDJ-R2",
                                        "receptor": "IG"
                                    },
                                    {
                                        "chain_type": "TR",
                                        "chemistry_type": "SCVDJ-R2",
                                        "receptor": "TR"
                                    }
                                ]
                            ],
                            "waiting": false
                        },
                        {
                            "id": "check_barcodes_compatibility",
                            "type": "CHECK_BARCODES_COMPATIBILITY[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "libraries_to_translate": []
                                }
                            ],
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.CHECK_BARCODES_COMPATIBILITY",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.DETECT_COUNT_CHEMISTRY",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CHECK_BARCODES_COMPATIBILITY",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.CHECK_BARCODES_COMPATIBILITY",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/CHECK_BARCODES_COMPATIBILITY",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/CHECK_BARCODES_COMPATIBILITY",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/CHECK_BARCODES_COMPATIBILITY/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/CHECK_BARCODES_COMPATIBILITY/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/CHECK_BARCODES_COMPATIBILITY/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/CHECK_BARCODES_COMPATIBILITY/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "chemistry_name",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "SC5P-R2",
                            "waiting": false
                        },
                        {
                            "id": "custom_chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "fastq_id": "dimitri_RNA",
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": 1,
                                    "lanes": null,
                                    "library_type": "Gene Expression",
                                    "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                    "sample_indices": null,
                                    "sample_names": [
                                        "dimitri_RNA"
                                    ],
                                    "subsample_rate": null,
                                    "target_set": null,
                                    "target_set_name": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "enforce_library_concordance",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "libraries_to_translate",
                            "type": "string[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [],
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.CHECK_BARCODES_COMPATIBILITY"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.CHECK_BARCODES_COMPATIBILITY"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.CHECK_BARCODES_COMPATIBILITY"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.DETECT_COUNT_CHEMISTRY",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.CHECK_BARCODES_COMPATIBILITY"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian barcode_compatibility"
    },
    {
        "name": "DETECT_COUNT_CHEMISTRY",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.DETECT_COUNT_CHEMISTRY",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/DETECT_COUNT_CHEMISTRY",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/DETECT_COUNT_CHEMISTRY",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 20,
                    "__vmem_gb": 23
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/DETECT_COUNT_CHEMISTRY/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/DETECT_COUNT_CHEMISTRY/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/DETECT_COUNT_CHEMISTRY/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 20,
                            "__threads": 1,
                            "__vmem_gb": 23
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/DETECT_COUNT_CHEMISTRY/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "chemistry_name_spec",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "auto",
                            "waiting": false
                        },
                        {
                            "id": "allowed_chems",
                            "type": "string[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": [
                                "auto",
                                "custom",
                                "threeprime",
                                "fiveprime",
                                "SC3P_auto",
                                "SC5P_auto",
                                "SC3Pv1",
                                "SC3Pv2",
                                "SC3Pv3",
                                "SC3Pv3LT",
                                "SC3Pv3HT",
                                "SC5P-PE",
                                "SC5P-R1",
                                "SC5P-R2",
                                "SC5PHT",
                                "SC-FB",
                                "ARC-v1"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "fastq_id": "dimitri_RNA",
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": 1,
                                    "lanes": null,
                                    "library_type": "Gene Expression",
                                    "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                    "sample_indices": null,
                                    "sample_names": [
                                        "dimitri_RNA"
                                    ],
                                    "subsample_rate": null,
                                    "target_set": null,
                                    "target_set_name": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "chemistry_type",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "SC5P-R2",
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.DETECT_COUNT_CHEMISTRY"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.DETECT_COUNT_CHEMISTRY"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.DETECT_COUNT_CHEMISTRY"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian detect_chemistry"
    },
    {
        "name": "VDJ_CHEMISTRY_DETECTOR",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "vdj_chem_inputs",
                            "type": "VdjChemistryInputs",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "call": "VDJ_CHEMISTRY_DETECTOR",
                                "mode": "array",
                                "split": {
                                    "call": "_GEM_WELL_CHEMISTRY_DETECTOR",
                                    "mode": "array",
                                    "split": [
                                        [
                                            {
                                                "chain_type": "IG",
                                                "chemistry": "SCVDJ_auto",
                                                "custom_chemistry_def": null,
                                                "r1_length": null,
                                                "r2_length": null,
                                                "sample_def": [
                                                    {
                                                        "fastq_id": "dimitri_BCR",
                                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                                        "gem_group": 1,
                                                        "lanes": null,
                                                        "library_type": "VDJ",
                                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                                        "sample_indices": null,
                                                        "sample_names": [
                                                            "dimitri_BCR"
                                                        ],
                                                        "subsample_rate": null,
                                                        "target_set": null,
                                                        "target_set_name": null
                                                    }
                                                ]
                                            },
                                            {
                                                "chain_type": "TR",
                                                "chemistry": "SCVDJ_auto",
                                                "custom_chemistry_def": null,
                                                "r1_length": null,
                                                "r2_length": null,
                                                "sample_def": [
                                                    {
                                                        "fastq_id": "dimitri_TCR",
                                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                                        "gem_group": 1,
                                                        "lanes": null,
                                                        "library_type": "VDJ",
                                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                                        "sample_indices": null,
                                                        "sample_names": [
                                                            "dimitri_TCR"
                                                        ],
                                                        "subsample_rate": null,
                                                        "target_set": null,
                                                        "target_set_name": null
                                                    }
                                                ]
                                            }
                                        ]
                                    ],
                                    "source": [
                                        {
                                            "call": "ID.dimitri-multi.SC_MULTI_CS.FULL_VDJ_INPUTS",
                                            "mode": "array",
                                            "merge_value": {
                                                "chain_type": {
                                                    "call": "FULL_VDJ_INPUTS",
                                                    "mode": "array",
                                                    "split": {
                                                        "__reference__": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG.vdj_inputs.chain_type"
                                                    }
                                                },
                                                "chemistry": "SCVDJ_auto",
                                                "custom_chemistry_def": null,
                                                "r1_length": {
                                                    "call": "FULL_VDJ_INPUTS",
                                                    "mode": "array",
                                                    "split": {
                                                        "__reference__": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG.vdj_inputs.r1_length"
                                                    }
                                                },
                                                "r2_length": {
                                                    "call": "FULL_VDJ_INPUTS",
                                                    "mode": "array",
                                                    "split": {
                                                        "__reference__": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG.vdj_inputs.r2_length"
                                                    }
                                                },
                                                "sample_def": {
                                                    "call": "FULL_VDJ_INPUTS",
                                                    "mode": "array",
                                                    "split": {
                                                        "__reference__": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG.vdj_inputs.sample_def"
                                                    }
                                                }
                                            },
                                            "merge_over": {
                                                "ref": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG.vdj_inputs",
                                                "type": "VdjInputs[]"
                                            }
                                        }
                                    ]
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
                            "waiting": false
                        },
                        {
                            "id": "gex_chemistry_name",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "call": "_GEM_WELL_CHEMISTRY_DETECTOR",
                                "mode": "array",
                                "split": [
                                    "SC5P-R2"
                                ],
                                "source": [
                                    {
                                        "__disabled__": {
                                            "__reference__": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG.basic_config.disable_count"
                                        },
                                        "value": {
                                            "__reference__": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.DETECT_COUNT_CHEMISTRY.chemistry_type",
                                            "fork": {
                                                "_GEM_WELL_CHEMISTRY_DETECTOR": 0
                                            }
                                        }
                                    }
                                ]
                            },
                            "waiting": false
                        },
                        {
                            "id": "gex_sample_def",
                            "type": "map[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "call": "_GEM_WELL_CHEMISTRY_DETECTOR",
                                "mode": "array",
                                "split": [
                                    [
                                        {
                                            "fastq_id": "dimitri_RNA",
                                            "fastq_mode": "ILMN_BCL2FASTQ",
                                            "gem_group": 1,
                                            "lanes": null,
                                            "library_type": "Gene Expression",
                                            "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                            "sample_indices": null,
                                            "sample_names": [
                                                "dimitri_RNA"
                                            ],
                                            "subsample_rate": null,
                                            "target_set": null,
                                            "target_set_name": null
                                        }
                                    ]
                                ],
                                "source": [
                                    {
                                        "__disabled__": {
                                            "__reference__": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG.basic_config.disable_count"
                                        },
                                        "value": {
                                            "__reference__": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG.count_input.sample_def"
                                        }
                                    }
                                ]
                            },
                            "waiting": false
                        },
                        {
                            "id": "gex_custom_chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "call": "_GEM_WELL_CHEMISTRY_DETECTOR",
                                "mode": "array",
                                "split": [
                                    null
                                ]
                            },
                            "waiting": false
                        },
                        {
                            "id": "disable_count",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "chemistry_type",
                            "type": "string[][]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                [
                                    "SCVDJ-R2",
                                    "SCVDJ-R2"
                                ]
                            ],
                            "waiting": false
                        },
                        {
                            "id": "receptor",
                            "type": "string[][]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                [
                                    "IG",
                                    "TR"
                                ]
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chain_type",
                            "type": "string[][]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                []
                            ],
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.DETECT_COUNT_CHEMISTRY",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.DETECT_CHEMISTRY",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.DETECT_VDJ_RECEPTOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CHECK_BARCODES_COMPATIBILITY_VDJ",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.CHECK_BARCODES_COMPATIBILITY_VDJ",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/CHECK_BARCODES_COMPATIBILITY_VDJ",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/CHECK_BARCODES_COMPATIBILITY_VDJ",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/CHECK_BARCODES_COMPATIBILITY_VDJ/fork0_fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/CHECK_BARCODES_COMPATIBILITY_VDJ/fork0_fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/CHECK_BARCODES_COMPATIBILITY_VDJ/fork0_fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/CHECK_BARCODES_COMPATIBILITY_VDJ/fork0_fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "vdj_chemistry_name",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.DETECT_CHEMISTRY",
                            "matchedFork": null,
                            "value": "SCVDJ-R2",
                            "waiting": false
                        },
                        {
                            "id": "vdj_sample_def",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": [
                                {
                                    "fastq_id": "dimitri_BCR",
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": 1,
                                    "lanes": null,
                                    "library_type": "VDJ",
                                    "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                    "sample_indices": null,
                                    "sample_names": [
                                        "dimitri_BCR"
                                    ],
                                    "subsample_rate": null,
                                    "target_set": null,
                                    "target_set_name": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "gex_chemistry_name",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "SC5P-R2",
                            "waiting": false
                        },
                        {
                            "id": "gex_sample_def",
                            "type": "map[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "fastq_id": "dimitri_RNA",
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": 1,
                                    "lanes": null,
                                    "library_type": "Gene Expression",
                                    "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                    "sample_indices": null,
                                    "sample_names": [
                                        "dimitri_RNA"
                                    ],
                                    "subsample_rate": null,
                                    "target_set": null,
                                    "target_set_name": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "gex_custom_chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "vdj_custom_chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "enforce_library_concordance",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "similarity_score",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 0.9955197132616488,
                            "waiting": false
                        }
                    ]
                }
            },
            {
                "index": 1,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/CHECK_BARCODES_COMPATIBILITY_VDJ/fork0_fork1",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/CHECK_BARCODES_COMPATIBILITY_VDJ/fork0_fork1/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/CHECK_BARCODES_COMPATIBILITY_VDJ/fork0_fork1/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/CHECK_BARCODES_COMPATIBILITY_VDJ/fork0_fork1/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "vdj_chemistry_name",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.DETECT_CHEMISTRY",
                            "matchedFork": null,
                            "value": "SCVDJ-R2",
                            "waiting": false
                        },
                        {
                            "id": "vdj_sample_def",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": [
                                {
                                    "fastq_id": "dimitri_TCR",
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": 1,
                                    "lanes": null,
                                    "library_type": "VDJ",
                                    "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                    "sample_indices": null,
                                    "sample_names": [
                                        "dimitri_TCR"
                                    ],
                                    "subsample_rate": null,
                                    "target_set": null,
                                    "target_set_name": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "gex_chemistry_name",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "SC5P-R2",
                            "waiting": false
                        },
                        {
                            "id": "gex_sample_def",
                            "type": "map[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "fastq_id": "dimitri_RNA",
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": 1,
                                    "lanes": null,
                                    "library_type": "Gene Expression",
                                    "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                    "sample_indices": null,
                                    "sample_names": [
                                        "dimitri_RNA"
                                    ],
                                    "subsample_rate": null,
                                    "target_set": null,
                                    "target_set_name": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "gex_custom_chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "vdj_custom_chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "enforce_library_concordance",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "similarity_score",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 0.9396593673965937,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.CHECK_BARCODES_COMPATIBILITY_VDJ"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.CHECK_BARCODES_COMPATIBILITY_VDJ"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.CHECK_BARCODES_COMPATIBILITY_VDJ"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.DETECT_COUNT_CHEMISTRY",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.CHECK_BARCODES_COMPATIBILITY_VDJ"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.DETECT_CHEMISTRY",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.CHECK_BARCODES_COMPATIBILITY_VDJ"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian vdj_gex_bc_compat"
    },
    {
        "name": "DETECT_CHEMISTRY",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.DETECT_CHEMISTRY",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/DETECT_CHEMISTRY",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/DETECT_CHEMISTRY",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 20,
                    "__vmem_gb": 23
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0_fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0_fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0_fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 20,
                            "__threads": 1,
                            "__vmem_gb": 23
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0_fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "allowed_chems",
                            "type": "string[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                "SCVDJ_auto",
                                "custom",
                                "SCVDJ",
                                "SCVDJ-R2",
                                "SCVDJ-R1"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry_name_spec",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "SCVDJ_auto",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": [
                                {
                                    "fastq_id": "dimitri_BCR",
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": 1,
                                    "lanes": null,
                                    "library_type": "VDJ",
                                    "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                    "sample_indices": null,
                                    "sample_names": [
                                        "dimitri_BCR"
                                    ],
                                    "subsample_rate": null,
                                    "target_set": null,
                                    "target_set_name": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "chemistry_type",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.DETECT_CHEMISTRY",
                            "matchedFork": null,
                            "value": "SCVDJ-R2",
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.DETECT_CHEMISTRY",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ]
                }
            },
            {
                "index": 1,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 20,
                    "__vmem_gb": 23
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0_fork1",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0_fork1/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0_fork1/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 20,
                            "__threads": 1,
                            "__vmem_gb": 23
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/DETECT_CHEMISTRY/fork0_fork1/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "allowed_chems",
                            "type": "string[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                "SCVDJ_auto",
                                "custom",
                                "SCVDJ",
                                "SCVDJ-R2",
                                "SCVDJ-R1"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry_name_spec",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "SCVDJ_auto",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": [
                                {
                                    "fastq_id": "dimitri_TCR",
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": 1,
                                    "lanes": null,
                                    "library_type": "VDJ",
                                    "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                    "sample_indices": null,
                                    "sample_names": [
                                        "dimitri_TCR"
                                    ],
                                    "subsample_rate": null,
                                    "target_set": null,
                                    "target_set_name": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "chemistry_type",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.DETECT_CHEMISTRY",
                            "matchedFork": null,
                            "value": "SCVDJ-R2",
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.DETECT_CHEMISTRY",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.DETECT_CHEMISTRY"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.DETECT_CHEMISTRY"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.DETECT_CHEMISTRY"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian detect_chemistry"
    },
    {
        "name": "DETECT_VDJ_RECEPTOR",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.DETECT_VDJ_RECEPTOR",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/DETECT_VDJ_RECEPTOR",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/DETECT_VDJ_RECEPTOR",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/DETECT_VDJ_RECEPTOR/fork0_fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/DETECT_VDJ_RECEPTOR/fork0_fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/DETECT_VDJ_RECEPTOR/fork0_fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/DETECT_VDJ_RECEPTOR/fork0_fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "force_receptor",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "IG",
                            "waiting": false
                        },
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
                            "waiting": false
                        },
                        {
                            "id": "chemistry",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.DETECT_CHEMISTRY",
                            "matchedFork": null,
                            "value": "SCVDJ-R2",
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": [
                                {
                                    "fastq_id": "dimitri_BCR",
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": 1,
                                    "lanes": null,
                                    "library_type": "VDJ",
                                    "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                    "sample_indices": null,
                                    "sample_names": [
                                        "dimitri_BCR"
                                    ],
                                    "subsample_rate": null,
                                    "target_set": null,
                                    "target_set_name": null
                                }
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.DETECT_VDJ_RECEPTOR",
                            "matchedFork": null,
                            "value": "IG",
                            "waiting": false
                        }
                    ]
                }
            },
            {
                "index": 1,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/DETECT_VDJ_RECEPTOR/fork0_fork1",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/DETECT_VDJ_RECEPTOR/fork0_fork1/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/DETECT_VDJ_RECEPTOR/fork0_fork1/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_CHEMISTRY_DETECTOR/_GEM_WELL_CHEMISTRY_DETECTOR/VDJ_CHEMISTRY_DETECTOR/DETECT_VDJ_RECEPTOR/fork0_fork1/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "force_receptor",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "TR",
                            "waiting": false
                        },
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
                            "waiting": false
                        },
                        {
                            "id": "chemistry",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.DETECT_CHEMISTRY",
                            "matchedFork": null,
                            "value": "SCVDJ-R2",
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": [
                                {
                                    "fastq_id": "dimitri_TCR",
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": 1,
                                    "lanes": null,
                                    "library_type": "VDJ",
                                    "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                    "sample_indices": null,
                                    "sample_names": [
                                        "dimitri_TCR"
                                    ],
                                    "subsample_rate": null,
                                    "target_set": null,
                                    "target_set_name": null
                                }
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.DETECT_VDJ_RECEPTOR",
                            "matchedFork": null,
                            "value": "TR",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.DETECT_VDJ_RECEPTOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.DETECT_VDJ_RECEPTOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.DETECT_VDJ_RECEPTOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.DETECT_CHEMISTRY",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.VDJ_CHEMISTRY_DETECTOR.DETECT_VDJ_RECEPTOR"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian detect_vdj_receptor"
    },
    {
        "name": "MULTI_GEM_WELL_PROCESSOR",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_group",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "multi_config_sha",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "441f739f093e36c43f57328492fe5aa9703c212f8c5a330ff0ef60c31a5f08c4",
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "count_inputs",
                            "type": "CounterInputs",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "aligner": null,
                                "cell_calling_config": {
                                    "cell_barcodes": null,
                                    "disable_ab_aggregate_detection": false,
                                    "force_cells": null,
                                    "override_library_types": null,
                                    "override_mode": null,
                                    "recovered_cells": null
                                },
                                "custom_chemistry_def": null,
                                "enforce_library_concordance": true,
                                "feature_reference": null,
                                "force_sample_barcodes": null,
                                "gene_index": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_COUNT_INPUTS/WRITE_GENE_INDEX/fork0/chnk0-ucc6a7a71a3/files/gene_index.json",
                                "include_introns": false,
                                "initial_reads": null,
                                "min_assignment_confidence": null,
                                "no_bam": false,
                                "no_target_umi_filter": false,
                                "primers": [
                                    {
                                        "name": "P5",
                                        "seq": "AATGATACGGCGACCACCGAGATCT"
                                    },
                                    {
                                        "name": "P7",
                                        "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                    },
                                    {
                                        "name": "R1",
                                        "seq": "ACACTCTTTCCCTACACGACG"
                                    },
                                    {
                                        "name": "R2",
                                        "seq": "GTGACTGGAGTTCAGACGTGTG"
                                    },
                                    {
                                        "name": "switch_oligo",
                                        "seq": "AAGCAGTGGTATCAACGCAGAGTACATGGG"
                                    },
                                    {
                                        "name": "polyA",
                                        "seq": "AAAAAAAAAAAAAAAAAAAA"
                                    }
                                ],
                                "r1_length": null,
                                "r2_length": null,
                                "reference_path": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_RNA",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "Gene Expression",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_RNA"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "subsample_rate": null,
                                "targeting_method": null,
                                "trim_polya_min_score": 20,
                                "trim_tso_min_score": 20
                            },
                            "waiting": false
                        },
                        {
                            "id": "count_chem",
                            "type": "DETECT_CHEMISTRY",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": {
                                "chemistry_type": "SC5P-R2",
                                "is_antibody_only": false
                            },
                            "waiting": false
                        },
                        {
                            "id": "libraries_to_translate",
                            "type": "string[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": [],
                            "waiting": false
                        },
                        {
                            "id": "vdj_t_chem_type",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "SCVDJ-R2",
                            "waiting": false
                        },
                        {
                            "id": "vdj_t_receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "TR",
                            "waiting": false
                        },
                        {
                            "id": "vdj_t_inputs",
                            "type": "VdjAssemblerInputs",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_TCR",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "VDJ",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_TCR"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "custom_chemistry_def": null,
                                "r1_length": null,
                                "r2_length": null,
                                "initial_reads": null,
                                "subsample_rate": null,
                                "denovo": false,
                                "force_cells": null,
                                "inner_enrichment_primers": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_chem_type",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "SCVDJ-R2",
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "IG",
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_inputs",
                            "type": "VdjAssemblerInputs",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_BCR",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "VDJ",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_BCR"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "custom_chemistry_def": null,
                                "r1_length": null,
                                "r2_length": null,
                                "initial_reads": null,
                                "subsample_rate": null,
                                "denovo": false,
                                "force_cells": null,
                                "inner_enrichment_primers": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_gen_inputs",
                            "type": "VdjGenInputs",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": {
                                "reference_path": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                                "vdj_reference_path": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0"
                            },
                            "waiting": false
                        },
                        {
                            "id": "is_pd",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "config",
                            "type": "FullPipelineConfig",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "disable_count": false,
                                "disable_multi": false,
                                "disable_multi_count": false,
                                "disable_vdj_b": false,
                                "disable_vdj_t": false,
                                "has_no_vdj_ref": false
                            },
                            "waiting": false
                        },
                        {
                            "id": "multi_graph",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG/fork0/chnk0-ucc6a7a7197/files/multi_graph.json",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "count",
                            "type": "COUNT_GEM_WELL_PROCESSOR",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "basic_counter_outs": {
                                    "aggregate_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/aggregate_barcodes.csv",
                                    "alignments": [
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/pos_sorted.asf"
                                    ],
                                    "annotation_files": null,
                                    "assign_tags": {
                                        "assignment_confidence_table": null,
                                        "cells_per_tag": null,
                                        "gem_well_inferred_throughputs": null,
                                        "gem_well_throughput": null,
                                        "jibes_model_summary": null,
                                        "jibes_parameters": null,
                                        "jibes_summary_data": null,
                                        "marginal_tag_frequencies": null,
                                        "non_tag_assignments": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/CALL_TAGS_JIBES/fork0/join-ucc6a7a7cdb/files/non_tag_assignments.json",
                                        "sample_assignment_metrics": {
                                            "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/dimitri-multi_summary.json"
                                        },
                                        "sample_barcodes_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/sample_barcodes.json",
                                        "tag_assigner_pickle": null,
                                        "tag_call_metrics_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/MERGE_METRICS/fork0/chnk0-ucc6a7a7ce0/files/summary.json",
                                        "tag_calls_per_cell": null,
                                        "tag_calls_summary": null,
                                        "tag_contaminant_info": null,
                                        "tag_umi_thresholds_csv": null,
                                        "tag_umi_thresholds_json": null
                                    },
                                    "bam_header": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/join-ucc6a7a77c8/files/bam_header",
                                    "barcode_correction_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/join-ucc6a7a77c8/files/barcode_summary.csv",
                                    "barcode_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0/chnk0-ucc6a7a7c4d/files/barcode_summary.h5",
                                    "barcode_whitelist": "737K-august-2016",
                                    "bc_umi_info": [
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/bc_umi_info.bui"
                                    ],
                                    "filtered_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                                    "filtered_gene_bc_matrices_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                                    "filtered_gene_bc_matrices_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_mex",
                                    "gem_groups": [
                                        1
                                    ],
                                    "gem_well_alignment_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS/fork0/chnk0-ucc6a7a7c4d/files/summary.json",
                                    "merged_subsampling_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUBSAMPLE_READS/fork0/join-ucc6a7a7cd4/files/merged_metrics.pickle",
                                    "molecule_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ccd/files/molecule_info_non_multiplexed.h5",
                                    "multi_matrices": [
                                        {
                                            "sample": "dimitri-multi",
                                            "matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                                            "matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_feature_barcode_matrix",
                                            "all_genes_matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix.h5",
                                            "all_genes_matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix",
                                            "filtered_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_barcodes.csv"
                                        }
                                    ],
                                    "multi_metrics": [
                                        {
                                            "per_barcode_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS/fork0/chnk0-ucc6a7a7cde/files/per_barcode_metrics.csv",
                                            "per_lib_type_metrics": {},
                                            "sample": "dimitri-multi",
                                            "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS/fork0/chnk0-ucc6a7a7cde/files/summary.json"
                                        }
                                    ],
                                    "multi_molecule_info": [
                                        {
                                            "h5_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ce2/files/molecule_info_dimitri-multi.h5",
                                            "sample": "dimitri-multi",
                                            "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ce2/files/dimitri-multi_summary.json"
                                        }
                                    ],
                                    "multi_pos_sorted_bam": [
                                        {
                                            "bam_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_dimitri-multi.bam",
                                            "bam_index_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_dimitri-multi.bam.bai",
                                            "sample": "dimitri-multi"
                                        },
                                        {
                                            "bam_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_unassigned.bam",
                                            "bam_index_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_unassigned.bam.bai",
                                            "sample": "unassigned"
                                        }
                                    ],
                                    "nonambient_cell_calls": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/nonambient_calls.csv",
                                    "per_barcode_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS/fork0/chnk0-ucc6a7a7c4d/files/per_barcode_metrics.csv",
                                    "per_barcode_metrics_shard": [
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/metrics_shard.bmsf"
                                    ],
                                    "possorted_genome_bam": null,
                                    "possorted_genome_bam_index": null,
                                    "raw_gene_bc_matrices_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0-ucc6a7a7c4d/files/raw_feature_bc_matrix.h5",
                                    "raw_gene_bc_matrices_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_MATRIX_MARKET/fork0/chnk0-ucc6a7a7c4d/files/raw_feature_bc_matrix",
                                    "read_chunks": [
                                        {
                                            "chemistry": {
                                                "barcode": [
                                                    {
                                                        "kind": "gel_bead",
                                                        "length": 16,
                                                        "offset": 0,
                                                        "read_type": "R1",
                                                        "whitelist": "737K-august-2016"
                                                    }
                                                ],
                                                "description": "Single Cell 5' R2-only",
                                                "endedness": "five_prime",
                                                "name": "SC5P-R2",
                                                "rna": {
                                                    "length": null,
                                                    "min_length": null,
                                                    "offset": 0,
                                                    "read_type": "R2"
                                                },
                                                "rna2": null,
                                                "strandedness": "-",
                                                "umi": {
                                                    "length": 10,
                                                    "min_length": null,
                                                    "offset": 16,
                                                    "read_type": "R1"
                                                }
                                            },
                                            "chunk_id": 0,
                                            "fastq_id": "dimitri_RNA",
                                            "fastqs": {
                                                "i1": null,
                                                "i2": null,
                                                "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                                "r1_interleaved": false,
                                                "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                            },
                                            "gem_group": 1,
                                            "library_id": 0,
                                            "library_type": "Gene Expression",
                                            "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                            "read_lengths": {},
                                            "subsample_rate": null
                                        }
                                    ],
                                    "read_shards": {
                                        "corrected_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/valid_shard.shard"
                                        ],
                                        "invalid_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/invalid_shard.shard"
                                        ],
                                        "valid_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c6/files/valid.shard"
                                        ]
                                    },
                                    "sample_assignment_metrics": {
                                        "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/dimitri-multi_summary.json"
                                    },
                                    "sample_barcodes_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/sample_barcodes.json",
                                    "sequencing_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                                    "slfe_feature_reference": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/split-ucc6a7a71c0/files/feature_reference.frf.bincode",
                                    "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MERGE_METRICS/fork0/chnk0-ucc6a7a7d61/files/summary.json",
                                    "target_set_name": null
                                },
                                "setup_chunks_outs": {
                                    "barcode_whitelist": "737K-august-2016",
                                    "chemistry_def": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell 5' R2-only",
                                        "endedness": "five_prime",
                                        "name": "SC5P-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunks": [
                                        {
                                            "chemistry": {
                                                "barcode": [
                                                    {
                                                        "kind": "gel_bead",
                                                        "length": 16,
                                                        "offset": 0,
                                                        "read_type": "R1",
                                                        "whitelist": "737K-august-2016"
                                                    }
                                                ],
                                                "description": "Single Cell 5' R2-only",
                                                "endedness": "five_prime",
                                                "name": "SC5P-R2",
                                                "rna": {
                                                    "length": null,
                                                    "min_length": null,
                                                    "offset": 0,
                                                    "read_type": "R2"
                                                },
                                                "rna2": null,
                                                "strandedness": "-",
                                                "umi": {
                                                    "length": 10,
                                                    "min_length": null,
                                                    "offset": 16,
                                                    "read_type": "R1"
                                                }
                                            },
                                            "chunk_id": 0,
                                            "fastq_id": "dimitri_RNA",
                                            "fastqs": {
                                                "i1": null,
                                                "i2": null,
                                                "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                                "r1_interleaved": false,
                                                "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                            },
                                            "gem_group": 1,
                                            "library_id": 0,
                                            "library_type": "Gene Expression",
                                            "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                            "read_lengths": {},
                                            "subsample_rate": null
                                        }
                                    ]
                                },
                                "target_outs": {
                                    "bait_fasta": null,
                                    "disable_target_umi_filter": true,
                                    "disable_targeted": true,
                                    "probe_set": null,
                                    "rps_limit": null,
                                    "summary": null,
                                    "target_gene_indices": null,
                                    "target_panel": null,
                                    "target_panel_or_probe_set": null,
                                    "target_set_name": null,
                                    "targeting_method": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_t",
                            "type": "VDJ_GEM_WELL_PROCESSOR",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "assembler_outs": {
                                    "assemblable_reads_per_bc": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/assemblable_reads_per_bc.arp.bincode",
                                    "barcode_support": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/barcode_support.csv",
                                    "barcodes_in_chunks": [
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk00-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk01-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk02-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk03-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk04-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk05-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk06-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk07-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk08-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk09-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk10-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk11-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk12-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk13-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk14-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk15-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk16-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk17-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk18-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk19-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk20-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk21-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk22-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk23-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk24-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk25-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk26-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk27-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk28-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk29-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk30-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk31-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk32-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk33-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk34-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk35-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk36-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk37-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk38-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk39-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk40-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk41-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk42-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk43-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk44-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk45-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk46-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk47-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk48-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk49-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk50-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk51-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk52-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk53-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk54-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk55-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk56-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk57-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk58-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk59-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk60-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk61-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk62-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk63-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk64-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk65-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk66-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk67-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk68-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk69-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk70-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk71-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk72-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk73-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk74-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk75-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk76-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk77-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk78-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk79-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk80-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk81-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk82-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk83-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk84-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk85-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk86-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk87-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk88-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk89-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk90-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk91-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk92-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk93-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk94-ucc6a7a72e6/files/barcodes_in_chunk.json"
                                    ],
                                    "contig_annotations": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                                    "contig_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_bam.bam",
                                    "contig_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_bam.bam.bai",
                                    "corrected_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72c2/files/corrected_barcode_counts.json",
                                    "gem_groups": [
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1
                                    ],
                                    "n50_n50_rpu": 2159,
                                    "processed_read_pairs": 46574590,
                                    "raw_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72c2/files/raw_barcode_counts.json",
                                    "read_shards": {
                                        "corrected_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                                        ],
                                        "invalid_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/invalid_shard.shard"
                                        ],
                                        "valid_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard"
                                        ]
                                    },
                                    "report": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/report.txt",
                                    "sequencing_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                                    "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/chnk0-ucc6a7a7409/files/summary.json",
                                    "summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/summary_tsv.tsv",
                                    "total_read_pairs": 58185432,
                                    "umi_summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/umi_summary_tsv.tsv",
                                    "unmapped_sample_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/unmapped_sample_fastq.fastq"
                                },
                                "setup_chunks_outs": {
                                    "barcode_whitelist": "737K-august-2016",
                                    "chemistry_def": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell V(D)J R2-only",
                                        "endedness": "five_prime",
                                        "name": "SCVDJ-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunks": [
                                        {
                                            "chemistry": {
                                                "barcode": [
                                                    {
                                                        "kind": "gel_bead",
                                                        "length": 16,
                                                        "offset": 0,
                                                        "read_type": "R1",
                                                        "whitelist": "737K-august-2016"
                                                    }
                                                ],
                                                "description": "Single Cell V(D)J R2-only",
                                                "endedness": "five_prime",
                                                "name": "SCVDJ-R2",
                                                "rna": {
                                                    "length": null,
                                                    "min_length": null,
                                                    "offset": 0,
                                                    "read_type": "R2"
                                                },
                                                "rna2": null,
                                                "strandedness": "-",
                                                "umi": {
                                                    "length": 10,
                                                    "min_length": null,
                                                    "offset": 16,
                                                    "read_type": "R1"
                                                }
                                            },
                                            "chunk_id": 0,
                                            "fastq_id": "dimitri_TCR",
                                            "fastqs": {
                                                "i1": null,
                                                "i2": null,
                                                "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_TCR_S1_L001_R1_001.fastq.gz",
                                                "r1_interleaved": false,
                                                "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_TCR_S1_L001_R2_001.fastq.gz"
                                            },
                                            "gem_group": 1,
                                            "library_id": 0,
                                            "library_type": "VDJ",
                                            "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                            "read_lengths": {},
                                            "subsample_rate": null
                                        }
                                    ]
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_b",
                            "type": "VDJ_GEM_WELL_PROCESSOR",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "assembler_outs": {
                                    "assemblable_reads_per_bc": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/assemblable_reads_per_bc.arp.bincode",
                                    "barcode_support": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/barcode_support.csv",
                                    "barcodes_in_chunks": [
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk000-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk001-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk002-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk003-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk004-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk005-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk006-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk007-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk008-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk009-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk010-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk011-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk012-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk013-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk014-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk015-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk016-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk017-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk018-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk019-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk020-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk021-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk022-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk023-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk024-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk025-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk026-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk027-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk028-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk029-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk030-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk031-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk032-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk033-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk034-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk035-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk036-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk037-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk038-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk039-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk040-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk041-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk042-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk043-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk044-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk045-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk046-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk047-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk048-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk049-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk050-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk051-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk052-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk053-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk054-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk055-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk056-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk057-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk058-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk059-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk060-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk061-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk062-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk063-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk064-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk065-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk066-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk067-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk068-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk069-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk070-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk071-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk072-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk073-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk074-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk075-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk076-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk077-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk078-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk079-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk080-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk081-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk082-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk083-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk084-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk085-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk086-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk087-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk088-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk089-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk090-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk091-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk092-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk093-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk094-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk095-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk096-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk097-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk098-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk099-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk100-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk101-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk102-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk103-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk104-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk105-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk106-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk107-ucc6a7a72ce/files/barcodes_in_chunk.json"
                                    ],
                                    "contig_annotations": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                                    "contig_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_bam.bam",
                                    "contig_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_bam.bam.bai",
                                    "corrected_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72b0/files/corrected_barcode_counts.json",
                                    "gem_groups": [
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1
                                    ],
                                    "n50_n50_rpu": 288,
                                    "processed_read_pairs": 20716612,
                                    "raw_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72b0/files/raw_barcode_counts.json",
                                    "read_shards": {
                                        "corrected_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                                        ],
                                        "invalid_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/invalid_shard.shard"
                                        ],
                                        "valid_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard"
                                        ]
                                    },
                                    "report": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/report.txt",
                                    "sequencing_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                                    "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/chnk0-ucc6a7a73e1/files/summary.json",
                                    "summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/summary_tsv.tsv",
                                    "total_read_pairs": 56633794,
                                    "umi_summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/umi_summary_tsv.tsv",
                                    "unmapped_sample_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/unmapped_sample_fastq.fastq"
                                },
                                "setup_chunks_outs": {
                                    "barcode_whitelist": "737K-august-2016",
                                    "chemistry_def": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell V(D)J R2-only",
                                        "endedness": "five_prime",
                                        "name": "SCVDJ-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunks": [
                                        {
                                            "chemistry": {
                                                "barcode": [
                                                    {
                                                        "kind": "gel_bead",
                                                        "length": 16,
                                                        "offset": 0,
                                                        "read_type": "R1",
                                                        "whitelist": "737K-august-2016"
                                                    }
                                                ],
                                                "description": "Single Cell V(D)J R2-only",
                                                "endedness": "five_prime",
                                                "name": "SCVDJ-R2",
                                                "rna": {
                                                    "length": null,
                                                    "min_length": null,
                                                    "offset": 0,
                                                    "read_type": "R2"
                                                },
                                                "rna2": null,
                                                "strandedness": "-",
                                                "umi": {
                                                    "length": 10,
                                                    "min_length": null,
                                                    "offset": 16,
                                                    "read_type": "R1"
                                                }
                                            },
                                            "chunk_id": 0,
                                            "fastq_id": "dimitri_BCR",
                                            "fastqs": {
                                                "i1": null,
                                                "i2": null,
                                                "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_BCR_S1_L001_R1_001.fastq.gz",
                                                "r1_interleaved": false,
                                                "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_BCR_S1_L001_R2_001.fastq.gz"
                                            },
                                            "gem_group": 1,
                                            "library_id": 0,
                                            "library_type": "VDJ",
                                            "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                            "read_lengths": {},
                                            "subsample_rate": null
                                        }
                                    ]
                                }
                            },
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "COUNT_GEM_WELL_PROCESSOR",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_group",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "multi_config_sha",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "441f739f093e36c43f57328492fe5aa9703c212f8c5a330ff0ef60c31a5f08c4",
                            "waiting": false
                        },
                        {
                            "id": "inputs",
                            "type": "CounterInputs",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "aligner": null,
                                "cell_calling_config": {
                                    "cell_barcodes": null,
                                    "disable_ab_aggregate_detection": false,
                                    "force_cells": null,
                                    "override_library_types": null,
                                    "override_mode": null,
                                    "recovered_cells": null
                                },
                                "custom_chemistry_def": null,
                                "enforce_library_concordance": true,
                                "feature_reference": null,
                                "force_sample_barcodes": null,
                                "gene_index": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_COUNT_INPUTS/WRITE_GENE_INDEX/fork0/chnk0-ucc6a7a71a3/files/gene_index.json",
                                "include_introns": false,
                                "initial_reads": null,
                                "min_assignment_confidence": null,
                                "no_bam": false,
                                "no_target_umi_filter": false,
                                "primers": [
                                    {
                                        "name": "P5",
                                        "seq": "AATGATACGGCGACCACCGAGATCT"
                                    },
                                    {
                                        "name": "P7",
                                        "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                    },
                                    {
                                        "name": "R1",
                                        "seq": "ACACTCTTTCCCTACACGACG"
                                    },
                                    {
                                        "name": "R2",
                                        "seq": "GTGACTGGAGTTCAGACGTGTG"
                                    },
                                    {
                                        "name": "switch_oligo",
                                        "seq": "AAGCAGTGGTATCAACGCAGAGTACATGGG"
                                    },
                                    {
                                        "name": "polyA",
                                        "seq": "AAAAAAAAAAAAAAAAAAAA"
                                    }
                                ],
                                "r1_length": null,
                                "r2_length": null,
                                "reference_path": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_RNA",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "Gene Expression",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_RNA"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "subsample_rate": null,
                                "targeting_method": null,
                                "trim_polya_min_score": 20,
                                "trim_tso_min_score": 20
                            },
                            "waiting": false
                        },
                        {
                            "id": "chem",
                            "type": "DETECT_CHEMISTRY",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": {
                                "chemistry_type": "SC5P-R2",
                                "is_antibody_only": false
                            },
                            "waiting": false
                        },
                        {
                            "id": "libraries_to_translate",
                            "type": "string[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": [],
                            "waiting": false
                        },
                        {
                            "id": "is_pd",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "disable_multi",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "multi_graph",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG/fork0/chnk0-ucc6a7a7197/files/multi_graph.json",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "target_outs",
                            "type": "PARSE_TARGET_FEATURES",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "bait_fasta": null,
                                "disable_target_umi_filter": true,
                                "disable_targeted": true,
                                "probe_set": null,
                                "rps_limit": null,
                                "summary": null,
                                "target_gene_indices": null,
                                "target_panel": null,
                                "target_panel_or_probe_set": null,
                                "target_set_name": null,
                                "targeting_method": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "setup_chunks_outs",
                            "type": "MULTI_SETUP_CHUNKS",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "barcode_whitelist": "737K-august-2016",
                                "chemistry_def": {
                                    "barcode": [
                                        {
                                            "kind": "gel_bead",
                                            "length": 16,
                                            "offset": 0,
                                            "read_type": "R1",
                                            "whitelist": "737K-august-2016"
                                        }
                                    ],
                                    "description": "Single Cell 5' R2-only",
                                    "endedness": "five_prime",
                                    "name": "SC5P-R2",
                                    "rna": {
                                        "length": null,
                                        "min_length": null,
                                        "offset": 0,
                                        "read_type": "R2"
                                    },
                                    "rna2": null,
                                    "strandedness": "-",
                                    "umi": {
                                        "length": 10,
                                        "min_length": null,
                                        "offset": 16,
                                        "read_type": "R1"
                                    }
                                },
                                "chunks": [
                                    {
                                        "chemistry": {
                                            "barcode": [
                                                {
                                                    "kind": "gel_bead",
                                                    "length": 16,
                                                    "offset": 0,
                                                    "read_type": "R1",
                                                    "whitelist": "737K-august-2016"
                                                }
                                            ],
                                            "description": "Single Cell 5' R2-only",
                                            "endedness": "five_prime",
                                            "name": "SC5P-R2",
                                            "rna": {
                                                "length": null,
                                                "min_length": null,
                                                "offset": 0,
                                                "read_type": "R2"
                                            },
                                            "rna2": null,
                                            "strandedness": "-",
                                            "umi": {
                                                "length": 10,
                                                "min_length": null,
                                                "offset": 16,
                                                "read_type": "R1"
                                            }
                                        },
                                        "chunk_id": 0,
                                        "fastq_id": "dimitri_RNA",
                                        "fastqs": {
                                            "i1": null,
                                            "i2": null,
                                            "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                            "r1_interleaved": false,
                                            "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                        },
                                        "gem_group": 1,
                                        "library_id": 0,
                                        "library_type": "Gene Expression",
                                        "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                        "read_lengths": {},
                                        "subsample_rate": null
                                    }
                                ]
                            },
                            "waiting": false
                        },
                        {
                            "id": "basic_counter_outs",
                            "type": "_BASIC_SC_RNA_COUNTER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "aggregate_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/aggregate_barcodes.csv",
                                "alignments": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/pos_sorted.asf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/pos_sorted.asf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/pos_sorted.asf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/pos_sorted.asf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/pos_sorted.asf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/pos_sorted.asf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/pos_sorted.asf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/pos_sorted.asf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/pos_sorted.asf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/pos_sorted.asf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/pos_sorted.asf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/pos_sorted.asf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/pos_sorted.asf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/pos_sorted.asf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/pos_sorted.asf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/pos_sorted.asf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/pos_sorted.asf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/pos_sorted.asf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/pos_sorted.asf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/pos_sorted.asf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/pos_sorted.asf"
                                ],
                                "annotation_files": null,
                                "assign_tags": {
                                    "assignment_confidence_table": null,
                                    "cells_per_tag": null,
                                    "gem_well_inferred_throughputs": null,
                                    "gem_well_throughput": null,
                                    "jibes_model_summary": null,
                                    "jibes_parameters": null,
                                    "jibes_summary_data": null,
                                    "marginal_tag_frequencies": null,
                                    "non_tag_assignments": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/CALL_TAGS_JIBES/fork0/join-ucc6a7a7cdb/files/non_tag_assignments.json",
                                    "sample_assignment_metrics": {
                                        "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/dimitri-multi_summary.json"
                                    },
                                    "sample_barcodes_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/sample_barcodes.json",
                                    "tag_assigner_pickle": null,
                                    "tag_call_metrics_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/MERGE_METRICS/fork0/chnk0-ucc6a7a7ce0/files/summary.json",
                                    "tag_calls_per_cell": null,
                                    "tag_calls_summary": null,
                                    "tag_contaminant_info": null,
                                    "tag_umi_thresholds_csv": null,
                                    "tag_umi_thresholds_json": null
                                },
                                "bam_header": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/join-ucc6a7a77c8/files/bam_header",
                                "barcode_correction_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/join-ucc6a7a77c8/files/barcode_summary.csv",
                                "barcode_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0/chnk0-ucc6a7a7c4d/files/barcode_summary.h5",
                                "barcode_whitelist": "737K-august-2016",
                                "bc_umi_info": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/bc_umi_info.bui",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/bc_umi_info.bui",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/bc_umi_info.bui",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/bc_umi_info.bui",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/bc_umi_info.bui",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/bc_umi_info.bui",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/bc_umi_info.bui",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/bc_umi_info.bui",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/bc_umi_info.bui",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/bc_umi_info.bui",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/bc_umi_info.bui",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/bc_umi_info.bui",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/bc_umi_info.bui",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/bc_umi_info.bui",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/bc_umi_info.bui",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/bc_umi_info.bui",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/bc_umi_info.bui",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/bc_umi_info.bui",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/bc_umi_info.bui",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/bc_umi_info.bui",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/bc_umi_info.bui"
                                ],
                                "filtered_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                                "filtered_gene_bc_matrices_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                                "filtered_gene_bc_matrices_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_mex",
                                "gem_groups": [
                                    1
                                ],
                                "gem_well_alignment_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS/fork0/chnk0-ucc6a7a7c4d/files/summary.json",
                                "merged_subsampling_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUBSAMPLE_READS/fork0/join-ucc6a7a7cd4/files/merged_metrics.pickle",
                                "molecule_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ccd/files/molecule_info_non_multiplexed.h5",
                                "multi_matrices": [
                                    {
                                        "sample": "dimitri-multi",
                                        "matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                                        "matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_feature_barcode_matrix",
                                        "all_genes_matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix.h5",
                                        "all_genes_matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix",
                                        "filtered_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_barcodes.csv"
                                    }
                                ],
                                "multi_metrics": [
                                    {
                                        "per_barcode_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS/fork0/chnk0-ucc6a7a7cde/files/per_barcode_metrics.csv",
                                        "per_lib_type_metrics": {},
                                        "sample": "dimitri-multi",
                                        "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS/fork0/chnk0-ucc6a7a7cde/files/summary.json"
                                    }
                                ],
                                "multi_molecule_info": [
                                    {
                                        "h5_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ce2/files/molecule_info_dimitri-multi.h5",
                                        "sample": "dimitri-multi",
                                        "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ce2/files/dimitri-multi_summary.json"
                                    }
                                ],
                                "multi_pos_sorted_bam": [
                                    {
                                        "bam_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_dimitri-multi.bam",
                                        "bam_index_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_dimitri-multi.bam.bai",
                                        "sample": "dimitri-multi"
                                    },
                                    {
                                        "bam_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_unassigned.bam",
                                        "bam_index_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_unassigned.bam.bai",
                                        "sample": "unassigned"
                                    }
                                ],
                                "nonambient_cell_calls": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/nonambient_calls.csv",
                                "per_barcode_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS/fork0/chnk0-ucc6a7a7c4d/files/per_barcode_metrics.csv",
                                "per_barcode_metrics_shard": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/metrics_shard.bmsf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/metrics_shard.bmsf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/metrics_shard.bmsf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/metrics_shard.bmsf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/metrics_shard.bmsf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/metrics_shard.bmsf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/metrics_shard.bmsf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/metrics_shard.bmsf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/metrics_shard.bmsf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/metrics_shard.bmsf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/metrics_shard.bmsf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/metrics_shard.bmsf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/metrics_shard.bmsf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/metrics_shard.bmsf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/metrics_shard.bmsf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/metrics_shard.bmsf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/metrics_shard.bmsf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/metrics_shard.bmsf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/metrics_shard.bmsf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/metrics_shard.bmsf",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/metrics_shard.bmsf"
                                ],
                                "possorted_genome_bam": null,
                                "possorted_genome_bam_index": null,
                                "raw_gene_bc_matrices_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0-ucc6a7a7c4d/files/raw_feature_bc_matrix.h5",
                                "raw_gene_bc_matrices_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_MATRIX_MARKET/fork0/chnk0-ucc6a7a7c4d/files/raw_feature_bc_matrix",
                                "read_chunks": [
                                    {
                                        "chemistry": {
                                            "barcode": [
                                                {
                                                    "kind": "gel_bead",
                                                    "length": 16,
                                                    "offset": 0,
                                                    "read_type": "R1",
                                                    "whitelist": "737K-august-2016"
                                                }
                                            ],
                                            "description": "Single Cell 5' R2-only",
                                            "endedness": "five_prime",
                                            "name": "SC5P-R2",
                                            "rna": {
                                                "length": null,
                                                "min_length": null,
                                                "offset": 0,
                                                "read_type": "R2"
                                            },
                                            "rna2": null,
                                            "strandedness": "-",
                                            "umi": {
                                                "length": 10,
                                                "min_length": null,
                                                "offset": 16,
                                                "read_type": "R1"
                                            }
                                        },
                                        "chunk_id": 0,
                                        "fastq_id": "dimitri_RNA",
                                        "fastqs": {
                                            "i1": null,
                                            "i2": null,
                                            "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                            "r1_interleaved": false,
                                            "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                        },
                                        "gem_group": 1,
                                        "library_id": 0,
                                        "library_type": "Gene Expression",
                                        "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                        "read_lengths": {},
                                        "subsample_rate": null
                                    }
                                ],
                                "read_shards": {
                                    "corrected_reads": [
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/valid_shard.shard"
                                    ],
                                    "invalid_reads": [
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/invalid_shard.shard"
                                    ],
                                    "valid_reads": [
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c6/files/valid.shard"
                                    ]
                                },
                                "sample_assignment_metrics": {
                                    "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/dimitri-multi_summary.json"
                                },
                                "sample_barcodes_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/sample_barcodes.json",
                                "sequencing_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                                "slfe_feature_reference": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/split-ucc6a7a71c0/files/feature_reference.frf.bincode",
                                "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MERGE_METRICS/fork0/chnk0-ucc6a7a7d61/files/summary.json",
                                "target_set_name": null
                            },
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "MULTI_SETUP_CHUNKS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/MULTI_SETUP_CHUNKS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/MULTI_SETUP_CHUNKS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/MULTI_SETUP_CHUNKS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/MULTI_SETUP_CHUNKS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/MULTI_SETUP_CHUNKS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/MULTI_SETUP_CHUNKS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "chemistry_name",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": "SC5P-R2",
                            "waiting": false
                        },
                        {
                            "id": "default_library_type",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "fastq_id": "dimitri_RNA",
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": 1,
                                    "lanes": null,
                                    "library_type": "Gene Expression",
                                    "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                    "sample_indices": null,
                                    "sample_names": [
                                        "dimitri_RNA"
                                    ],
                                    "subsample_rate": null,
                                    "target_set": null,
                                    "target_set_name": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "custom_chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "chunks",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": [
                                {
                                    "chemistry": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell 5' R2-only",
                                        "endedness": "five_prime",
                                        "name": "SC5P-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunk_id": 0,
                                    "fastq_id": "dimitri_RNA",
                                    "fastqs": {
                                        "i1": null,
                                        "i2": null,
                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                        "r1_interleaved": false,
                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                    },
                                    "gem_group": 1,
                                    "library_id": 0,
                                    "library_type": "Gene Expression",
                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                    "read_lengths": {},
                                    "subsample_rate": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": {
                                "barcode": [
                                    {
                                        "kind": "gel_bead",
                                        "length": 16,
                                        "offset": 0,
                                        "read_type": "R1",
                                        "whitelist": "737K-august-2016"
                                    }
                                ],
                                "description": "Single Cell 5' R2-only",
                                "endedness": "five_prime",
                                "name": "SC5P-R2",
                                "rna": {
                                    "length": null,
                                    "min_length": null,
                                    "offset": 0,
                                    "read_type": "R2"
                                },
                                "rna2": null,
                                "strandedness": "-",
                                "umi": {
                                    "length": 10,
                                    "min_length": null,
                                    "offset": 16,
                                    "read_type": "R1"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": "737K-august-2016",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian setup_chunks"
    },
    {
        "name": "PARSE_TARGET_FEATURES",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/PARSE_TARGET_FEATURES",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/PARSE_TARGET_FEATURES",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/PARSE_TARGET_FEATURES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/PARSE_TARGET_FEATURES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/PARSE_TARGET_FEATURES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/PARSE_TARGET_FEATURES/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "no_probe_filter",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "rps_limit",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "fastq_id": "dimitri_RNA",
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": 1,
                                    "lanes": null,
                                    "library_type": "Gene Expression",
                                    "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                    "sample_indices": null,
                                    "sample_names": [
                                        "dimitri_RNA"
                                    ],
                                    "subsample_rate": null,
                                    "target_set": null,
                                    "target_set_name": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        },
                        {
                            "id": "gene_index",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_COUNT_INPUTS/WRITE_GENE_INDEX/fork0/chnk0-ucc6a7a71a3/files/gene_index.json",
                            "waiting": false
                        },
                        {
                            "id": "no_target_umi_filter",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "bait_fasta",
                            "type": "fa",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_panel",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "probe_set",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_panel_or_probe_set",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_gene_indices",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "disable_targeted",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "disable_target_umi_filter",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "rps_limit",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_set_name",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "targeting_method",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/common/parse_target_features"
    },
    {
        "name": "_BASIC_SC_RNA_COUNTER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_well",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "multi_config_sha",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "441f739f093e36c43f57328492fe5aa9703c212f8c5a330ff0ef60c31a5f08c4",
                            "waiting": false
                        },
                        {
                            "id": "is_pd",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": {
                                "barcode": [
                                    {
                                        "kind": "gel_bead",
                                        "length": 16,
                                        "offset": 0,
                                        "read_type": "R1",
                                        "whitelist": "737K-august-2016"
                                    }
                                ],
                                "description": "Single Cell 5' R2-only",
                                "endedness": "five_prime",
                                "name": "SC5P-R2",
                                "rna": {
                                    "length": null,
                                    "min_length": null,
                                    "offset": 0,
                                    "read_type": "R2"
                                },
                                "rna2": null,
                                "strandedness": "-",
                                "umi": {
                                    "length": 10,
                                    "min_length": null,
                                    "offset": 16,
                                    "read_type": "R1"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": "737K-august-2016",
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "libraries_to_translate",
                            "type": "string[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": [],
                            "waiting": false
                        },
                        {
                            "id": "chunks",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": [
                                {
                                    "chemistry": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell 5' R2-only",
                                        "endedness": "five_prime",
                                        "name": "SC5P-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunk_id": 0,
                                    "fastq_id": "dimitri_RNA",
                                    "fastqs": {
                                        "i1": null,
                                        "i2": null,
                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                        "r1_interleaved": false,
                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                    },
                                    "gem_group": 1,
                                    "library_id": 0,
                                    "library_type": "Gene Expression",
                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                    "read_lengths": {},
                                    "subsample_rate": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "target_panel_summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "disable_target_umi_filter",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "rps_limit",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_features",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_set",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_set_name",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "disable_multi",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "multi_graph",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG/fork0/chnk0-ucc6a7a7197/files/multi_graph.json",
                            "waiting": false
                        },
                        {
                            "id": "is_spatial",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "no_probe_filter",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cell_calling_config",
                            "type": "CellCalling",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "cell_barcodes": null,
                                "disable_ab_aggregate_detection": false,
                                "force_cells": null,
                                "override_library_types": null,
                                "override_mode": null,
                                "recovered_cells": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "subsample_rate",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "initial_reads",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "trim_polya_min_score",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": 20,
                            "waiting": false
                        },
                        {
                            "id": "trim_tso_min_score",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": 20,
                            "waiting": false
                        },
                        {
                            "id": "include_introns",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "aligner",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "no_bam",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "force_sample_barcodes",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "min_assignment_confidence",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "aggregate_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/aggregate_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "nonambient_cell_calls",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/nonambient_calls.csv",
                            "waiting": false
                        },
                        {
                            "id": "barcode_correction_csv",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/join-ucc6a7a77c8/files/barcode_summary.csv",
                            "waiting": false
                        },
                        {
                            "id": "bam_header",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/join-ucc6a7a77c8/files/bam_header",
                            "waiting": false
                        },
                        {
                            "id": "possorted_genome_bam",
                            "type": "bam",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "possorted_genome_bam_index",
                            "type": "bam.bai",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MERGE_METRICS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MERGE_METRICS/fork0/chnk0-ucc6a7a7d61/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0/chnk0-ucc6a7a7c4d/files/barcode_summary.h5",
                            "waiting": false
                        },
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ccd/files/molecule_info_non_multiplexed.h5",
                            "waiting": false
                        },
                        {
                            "id": "raw_gene_bc_matrices_h5",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0-ucc6a7a7c4d/files/raw_feature_bc_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "raw_gene_bc_matrices_mex",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_MATRIX_MARKET",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_MATRIX_MARKET/fork0/chnk0-ucc6a7a7c4d/files/raw_feature_bc_matrix",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_h5",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_mex",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_mex",
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "read_shards",
                            "type": "ReadShards",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "corrected_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/valid_shard.shard"
                                ],
                                "invalid_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/invalid_shard.shard"
                                ],
                                "valid_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c6/files/valid.shard"
                                ]
                            },
                            "waiting": false
                        },
                        {
                            "id": "annotation_files",
                            "type": "ann.bincode.lz4[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sequencing_metrics",
                            "type": "smf.json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                            "waiting": false
                        },
                        {
                            "id": "gem_well_alignment_metrics",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS/fork0/chnk0-ucc6a7a7c4d/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "assign_tags",
                            "type": "AssignTagsOuts",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "assignment_confidence_table": null,
                                "cells_per_tag": null,
                                "gem_well_inferred_throughputs": null,
                                "gem_well_throughput": null,
                                "jibes_model_summary": null,
                                "jibes_parameters": null,
                                "jibes_summary_data": null,
                                "marginal_tag_frequencies": null,
                                "non_tag_assignments": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/CALL_TAGS_JIBES/fork0/join-ucc6a7a7cdb/files/non_tag_assignments.json",
                                "sample_assignment_metrics": {
                                    "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/dimitri-multi_summary.json"
                                },
                                "sample_barcodes_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/sample_barcodes.json",
                                "tag_assigner_pickle": null,
                                "tag_call_metrics_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/MERGE_METRICS/fork0/chnk0-ucc6a7a7ce0/files/summary.json",
                                "tag_calls_per_cell": null,
                                "tag_calls_summary": null,
                                "tag_contaminant_info": null,
                                "tag_umi_thresholds_csv": null,
                                "tag_umi_thresholds_json": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "multi_pos_sorted_bam",
                            "type": "SampleBamFile[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "bam_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_dimitri-multi.bam",
                                    "bam_index_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_dimitri-multi.bam.bai",
                                    "sample": "dimitri-multi"
                                },
                                {
                                    "bam_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_unassigned.bam",
                                    "bam_index_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_unassigned.bam.bai",
                                    "sample": "unassigned"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "multi_molecule_info",
                            "type": "SampleMoleculeInfo[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "h5_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ce2/files/molecule_info_dimitri-multi.h5",
                                    "sample": "dimitri-multi",
                                    "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ce2/files/dimitri-multi_summary.json"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "multi_metrics",
                            "type": "SampleMetrics[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "per_barcode_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS/fork0/chnk0-ucc6a7a7cde/files/per_barcode_metrics.csv",
                                    "per_lib_type_metrics": {},
                                    "sample": "dimitri-multi",
                                    "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS/fork0/chnk0-ucc6a7a7cde/files/summary.json"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "multi_matrices",
                            "type": "SampleMatrices[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "sample": "dimitri-multi",
                                    "matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                                    "matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_feature_barcode_matrix",
                                    "all_genes_matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix.h5",
                                    "all_genes_matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix",
                                    "filtered_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_barcodes.csv"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "sample_assignment_metrics",
                            "type": "map\u003cjson\u003e",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS",
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/dimitri-multi_summary.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "sample_barcodes_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/sample_barcodes.json",
                            "waiting": false
                        },
                        {
                            "id": "per_barcode_metrics",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS/fork0/chnk0-ucc6a7a7c4d/files/per_barcode_metrics.csv",
                            "waiting": false
                        },
                        {
                            "id": "per_barcode_metrics_shard",
                            "type": "bmsf[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/metrics_shard.bmsf"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "bc_umi_info",
                            "type": "bui[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/bc_umi_info.bui"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "alignments",
                            "type": "asf[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/pos_sorted.asf"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": "737K-august-2016",
                            "waiting": false
                        },
                        {
                            "id": "read_chunks",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": [
                                {
                                    "chemistry": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell 5' R2-only",
                                        "endedness": "five_prime",
                                        "name": "SC5P-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunk_id": 0,
                                    "fastq_id": "dimitri_RNA",
                                    "fastqs": {
                                        "i1": null,
                                        "i2": null,
                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                        "r1_interleaved": false,
                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                    },
                                    "gem_group": 1,
                                    "library_id": 0,
                                    "library_type": "Gene Expression",
                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                    "read_lengths": {},
                                    "subsample_rate": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "target_set_name",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "slfe_feature_reference",
                            "type": "frf.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/split-ucc6a7a71c0/files/feature_reference.frf.bincode",
                            "waiting": false
                        },
                        {
                            "id": "merged_subsampling_metrics",
                            "type": "pickle",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUBSAMPLE_READS/fork0/join-ucc6a7a7cd4/files/merged_metrics.pickle",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MERGE_METRICS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_COLLATE_PER_SAMPLE_METRICS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_BAM",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MATRICES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "DISABLE_BAMS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.DISABLE_BAMS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/DISABLE_BAMS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/DISABLE_BAMS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/DISABLE_BAMS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/DISABLE_BAMS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/DISABLE_BAMS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/DISABLE_BAMS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "is_pd",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "no_bam",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "disable_multi",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "disable_legacy_bam",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.DISABLE_BAMS",
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "disable_sample_bams",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.DISABLE_BAMS",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.DISABLE_BAMS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.DISABLE_BAMS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/multi/disable_bams"
    },
    {
        "name": "FILTER_BARCODES",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 5.98046875,
                    "__vmem_gb": 8.98046875
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "matrices_h5",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0-ucc6a7a7c4d/files/raw_feature_bc_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "barcode_correction_csv",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/join-ucc6a7a77c8/files/barcode_summary.csv",
                            "waiting": false
                        },
                        {
                            "id": "config",
                            "type": "CellCalling",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "cell_barcodes": null,
                                "disable_ab_aggregate_detection": false,
                                "force_cells": null,
                                "override_library_types": null,
                                "override_mode": null,
                                "recovered_cells": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry_description",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": "Single Cell 5' R2-only",
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "aggregate_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/aggregate_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "filtered_matrices_h5",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_matrices_mex",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_mex",
                            "waiting": false
                        },
                        {
                            "id": "nonambient_calls",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/nonambient_calls.csv",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/counter/filter_barcodes"
    },
    {
        "name": "MERGE_METRICS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MERGE_METRICS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MERGE_METRICS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MERGE_METRICS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MERGE_METRICS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MERGE_METRICS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MERGE_METRICS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MERGE_METRICS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "summaries",
                            "type": "json[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS/fork0/join-ucc6a7a7d5c/files/summary.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/MERGE_METRICS/fork0/chnk0-ucc6a7a7ce0/files/summary.json"
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MERGE_METRICS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MERGE_METRICS/fork0/chnk0-ucc6a7a7d61/files/summary.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MERGE_METRICS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MERGE_METRICS"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian merge_metrics"
    },
    {
        "name": "MULTI_COLLATE_PER_SAMPLE_METRICS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_COLLATE_PER_SAMPLE_METRICS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 4,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 4,
                            "__vmem_gb": 4,
                            "sample": "dimitri-multi"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "per_barcode_metrics",
                            "type": "bmsf[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/metrics_shard.bmsf"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "frf.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/split-ucc6a7a71c0/files/feature_reference.frf.bincode",
                            "waiting": false
                        },
                        {
                            "id": "sample_barcodes_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/sample_barcodes.json",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "per_barcode_metrics",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "per_lib_type_metrics",
                            "type": "map",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "multi_metrics",
                            "type": "SampleMetrics[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "per_barcode_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS/fork0/chnk0-ucc6a7a7cde/files/per_barcode_metrics.csv",
                                    "per_lib_type_metrics": {},
                                    "sample": "dimitri-multi",
                                    "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS/fork0/chnk0-ucc6a7a7cde/files/summary.json"
                                }
                            ],
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_COLLATE_PER_SAMPLE_METRICS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_COLLATE_PER_SAMPLE_METRICS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_COLLATE_PER_SAMPLE_METRICS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_COLLATE_PER_SAMPLE_METRICS"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian collate_metrics"
    },
    {
        "name": "MULTI_WRITE_PER_SAMPLE_BAM",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_BAM",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 4,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 2,
                            "__vmem_gb": 5,
                            "range": {
                                "end": [
                                    0,
                                    92373734,
                                    6355545164298120769,
                                    621235796,
                                    16
                                ],
                                "start": null
                            },
                            "write_header": true
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 2,
                            "__vmem_gb": 5,
                            "range": {
                                "end": [
                                    0,
                                    222628489,
                                    15355965081818988101,
                                    3972677656,
                                    0
                                ],
                                "start": [
                                    0,
                                    92373734,
                                    6355545164298120769,
                                    621235796,
                                    16
                                ]
                            },
                            "write_header": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 2,
                            "__vmem_gb": 5,
                            "range": {
                                "end": [
                                    2,
                                    65422558,
                                    12647270158753345708,
                                    3972677656,
                                    0
                                ],
                                "start": [
                                    0,
                                    222628489,
                                    15355965081818988101,
                                    3972677656,
                                    0
                                ]
                            },
                            "write_header": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 2,
                            "__vmem_gb": 5,
                            "range": {
                                "end": [
                                    3,
                                    47078946,
                                    7936744377372153456,
                                    3972677656,
                                    1024
                                ],
                                "start": [
                                    2,
                                    65422558,
                                    12647270158753345708,
                                    3972677656,
                                    0
                                ]
                            },
                            "write_header": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 2,
                            "__vmem_gb": 5,
                            "range": {
                                "end": [
                                    5,
                                    20781261,
                                    14068893623314518990,
                                    3972677656,
                                    16
                                ],
                                "start": [
                                    3,
                                    47078946,
                                    7936744377372153456,
                                    3972677656,
                                    1024
                                ]
                            },
                            "write_header": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 2,
                            "__vmem_gb": 5,
                            "range": {
                                "end": [
                                    6,
                                    92228343,
                                    7158330967622172467,
                                    3821707442,
                                    0
                                ],
                                "start": [
                                    5,
                                    20781261,
                                    14068893623314518990,
                                    3972677656,
                                    16
                                ]
                            },
                            "write_header": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 2,
                            "__vmem_gb": 5,
                            "range": {
                                "end": [
                                    8,
                                    39203002,
                                    18223922321111935246,
                                    3972677656,
                                    1040
                                ],
                                "start": [
                                    6,
                                    92228343,
                                    7158330967622172467,
                                    3821707442,
                                    0
                                ]
                            },
                            "write_header": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 2,
                            "__vmem_gb": 5,
                            "range": {
                                "end": [
                                    10,
                                    17861392,
                                    4092340865262145512,
                                    3972677656,
                                    1040
                                ],
                                "start": [
                                    8,
                                    39203002,
                                    18223922321111935246,
                                    3972677656,
                                    1040
                                ]
                            },
                            "write_header": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 2,
                            "__vmem_gb": 5,
                            "range": {
                                "end": [
                                    11,
                                    55234151,
                                    7278801360267324188,
                                    3456682350,
                                    1040
                                ],
                                "start": [
                                    10,
                                    17861392,
                                    4092340865262145512,
                                    3972677656,
                                    1040
                                ]
                            },
                            "write_header": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 2,
                            "__vmem_gb": 5,
                            "range": {
                                "end": [
                                    12,
                                    33555037,
                                    919020586825310632,
                                    3972677656,
                                    0
                                ],
                                "start": [
                                    11,
                                    55234151,
                                    7278801360267324188,
                                    3456682350,
                                    1040
                                ]
                            },
                            "write_header": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 2,
                            "__vmem_gb": 5,
                            "range": {
                                "end": [
                                    13,
                                    8399598,
                                    10836649615458504886,
                                    3972677656,
                                    16
                                ],
                                "start": [
                                    12,
                                    33555037,
                                    919020586825310632,
                                    3972677656,
                                    0
                                ]
                            },
                            "write_header": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 2,
                            "__vmem_gb": 5,
                            "range": {
                                "end": [
                                    15,
                                    51994054,
                                    12768241064092096373,
                                    3972677656,
                                    1024
                                ],
                                "start": [
                                    13,
                                    8399598,
                                    10836649615458504886,
                                    3972677656,
                                    16
                                ]
                            },
                            "write_header": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 2,
                            "__vmem_gb": 5,
                            "range": {
                                "end": [
                                    17,
                                    32588563,
                                    10912212542501902487,
                                    3188613919,
                                    1040
                                ],
                                "start": [
                                    15,
                                    51994054,
                                    12768241064092096373,
                                    3972677656,
                                    1024
                                ]
                            },
                            "write_header": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 2,
                            "__vmem_gb": 5,
                            "range": {
                                "end": [
                                    18,
                                    31271681,
                                    10564575709512006640,
                                    3972677656,
                                    1024
                                ],
                                "start": [
                                    17,
                                    32588563,
                                    10912212542501902487,
                                    3188613919,
                                    1040
                                ]
                            },
                            "write_header": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 2,
                            "__vmem_gb": 5,
                            "range": {
                                "end": [
                                    18,
                                    151458329,
                                    2618174811431252657,
                                    3972677656,
                                    1040
                                ],
                                "start": [
                                    18,
                                    31271681,
                                    10564575709512006640,
                                    3972677656,
                                    1024
                                ]
                            },
                            "write_header": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 2,
                            "__vmem_gb": 5,
                            "range": {
                                "end": [
                                    20,
                                    127078733,
                                    16674880820268828328,
                                    3972677656,
                                    16
                                ],
                                "start": [
                                    18,
                                    151458329,
                                    2618174811431252657,
                                    3972677656,
                                    1040
                                ]
                            },
                            "write_header": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 2,
                            "__vmem_gb": 5,
                            "range": {
                                "end": [
                                    22,
                                    1962,
                                    5747954703357994487,
                                    3972677656,
                                    16
                                ],
                                "start": [
                                    20,
                                    127078733,
                                    16674880820268828328,
                                    3972677656,
                                    16
                                ]
                            },
                            "write_header": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 2,
                            "__vmem_gb": 5,
                            "range": {
                                "end": [
                                    23,
                                    79149675,
                                    9358793528849030382,
                                    3972677656,
                                    16
                                ],
                                "start": [
                                    22,
                                    1962,
                                    5747954703357994487,
                                    3972677656,
                                    16
                                ]
                            },
                            "write_header": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 2,
                            "__vmem_gb": 5,
                            "range": {
                                "end": [
                                    51,
                                    109574,
                                    16382361750786941722,
                                    3972677656,
                                    16
                                ],
                                "start": [
                                    23,
                                    79149675,
                                    9358793528849030382,
                                    3972677656,
                                    16
                                ]
                            },
                            "write_header": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 2,
                            "__vmem_gb": 5,
                            "range": {
                                "end": [
                                    4294967295,
                                    -1,
                                    2962349475280252949,
                                    6346873,
                                    4
                                ],
                                "start": [
                                    51,
                                    109574,
                                    16382361750786941722,
                                    3972677656,
                                    16
                                ]
                            },
                            "write_header": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 2,
                            "__vmem_gb": 5,
                            "range": {
                                "end": null,
                                "start": [
                                    4294967295,
                                    -1,
                                    2962349475280252949,
                                    6346873,
                                    4
                                ]
                            },
                            "write_header": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "target_set_name",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_barcodes_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/sample_barcodes.json",
                            "waiting": false
                        },
                        {
                            "id": "no_bam",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.DISABLE_BAMS",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "bam_header",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/join-ucc6a7a77c8/files/bam_header",
                            "waiting": false
                        },
                        {
                            "id": "alignments",
                            "type": "asf[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/pos_sorted.asf"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "read_chunks",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": [
                                {
                                    "chemistry": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell 5' R2-only",
                                        "endedness": "five_prime",
                                        "name": "SC5P-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunk_id": 0,
                                    "fastq_id": "dimitri_RNA",
                                    "fastqs": {
                                        "i1": null,
                                        "i2": null,
                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                        "r1_interleaved": false,
                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                    },
                                    "gem_group": 1,
                                    "library_id": 0,
                                    "library_type": "Gene Expression",
                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                    "read_lengths": {},
                                    "subsample_rate": null
                                }
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "pos_sorted_bam",
                            "type": "SampleBamFile",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "multi_pos_sorted_bam",
                            "type": "SampleBamFile[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "bam_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_dimitri-multi.bam",
                                    "bam_index_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_dimitri-multi.bam.bai",
                                    "sample": "dimitri-multi"
                                },
                                {
                                    "bam_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_unassigned.bam",
                                    "bam_index_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_unassigned.bam.bai",
                                    "sample": "unassigned"
                                }
                            ],
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_BAM"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.DISABLE_BAMS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_BAM"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_BAM"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_BAM"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian write_pos_bam"
    },
    {
        "name": "MULTI_WRITE_PER_SAMPLE_MATRICES",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MATRICES",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 2,
                    "__vmem_gb": 5
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 5.98,
                            "__threads": 1,
                            "__vmem_gb": 8.98,
                            "barcodes": [
                                "AAACCTGAGCTGAACG-1",
                                "AAACCTGCATCGGTTA-1",
                                "AAACCTGTCACAATGC-1",
                                "AAACCTGTCCGCATAA-1",
                                "AAACCTGTCGCGGATC-1",
                                "AAACGGGTCACAAACC-1",
                                "AAAGATGCAATGTAAG-1",
                                "AAAGATGTCAAGGCTT-1",
                                "AAAGCAACATTCCTCG-1",
                                "AAAGCAAGTCTTGATG-1",
                                "AAAGCAAGTGAGGCTA-1",
                                "AAAGCAATCCTCAACC-1",
                                "AAAGTAGAGTTAGCGG-1",
                                "AAAGTAGCAACACGCC-1",
                                "AAAGTAGCACCAGCAC-1",
                                "AAAGTAGCAGTGAGTG-1",
                                "AAAGTAGCATCGGAAG-1",
                                "AAAGTAGCATTAGGCT-1",
                                "AAAGTAGTCCCAAGAT-1",
                                "AAATGCCAGGCAATTA-1",
                                "AAATGCCCACTACAGT-1",
                                "AAATGCCCATCGGAAG-1",
                                "AAATGCCGTACCTACA-1",
                                "AAATGCCTCAAACGGG-1",
                                "AAATGCCTCTTTCCTC-1",
                                "AACACGTAGAAGGTTT-1",
                                "AACACGTAGAATAGGG-1",
                                "AACACGTAGCGATAGC-1",
                                "AACACGTAGTGGCACA-1",
                                "AACACGTTCAATCACG-1",
                                "AACACGTTCACAATGC-1",
                                "AACCATGGTCATGCAT-1",
                                "AACCGCGAGATGTTAG-1",
                                "AACCGCGCATATGCTG-1",
                                "AACCGCGCATCAGTAC-1",
                                "AACCGCGCATGGTTGT-1",
                                "AACCGCGGTCCAGTGC-1",
                                "AACCGCGTCATACGGT-1",
                                "AACGTTGAGACAGGCT-1",
                                "AACGTTGCAATGCCAT-1",
                                "AACTCAGAGAAACGCC-1",
                                "AACTCAGAGTAGATGT-1",
                                "AACTCAGAGTAGGTGC-1",
                                "AACTCAGCAGGCGATA-1",
                                "AACTCCCAGGTGATTA-1",
                                "AACTCCCGTAACGACG-1",
                                "AACTCCCGTCAGGACA-1",
                                "AACTCCCGTGGTACAG-1",
                                "AACTCCCTCTAACTCT-1",
                                "AACTCTTAGGAGCGTT-1",
                                "AACTCTTCATGGTCTA-1",
                                "AACTCTTCATTAGCCA-1",
                                "AACTCTTGTTCCTCCA-1",
                                "AACTCTTTCATGGTCA-1",
                                "AACTCTTTCCCAACGG-1",
                                "AACTCTTTCCTACAGA-1",
                                "AACTCTTTCGATAGAA-1",
                                "AACTGGTAGTCCATAC-1",
                                "AACTGGTCAGCTCCGA-1",
                                "AACTGGTGTTAAGGGC-1",
                                "AACTGGTGTTATCGGT-1",
                                "AACTTTCAGACAAAGG-1",
                                "AACTTTCAGCACACAG-1",
                                "AACTTTCCATACGCCG-1",
                                "AACTTTCCATGGAATA-1",
                                "AACTTTCGTCCTGCTT-1",
                                "AAGACCTAGATGCCAG-1",
                                "AAGACCTGTCTTGCGG-1",
                                "AAGACCTGTTCGGCAC-1",
                                "AAGACCTTCTTTAGTC-1",
                                "AAGCCGCAGCTAGTCT-1",
                                "AAGCCGCAGTATCTCG-1",
                                "AAGCCGCCACACGCTG-1",
                                "AAGCCGCGTCCAGTTA-1",
                                "AAGGAGCAGAGCTATA-1",
                                "AAGGAGCCACCACGTG-1",
                                "AAGGAGCGTACGCTGC-1",
                                "AAGGCAGTCAACGGCC-1",
                                "AAGGCAGTCCCGACTT-1",
                                "AAGGCAGTCCGCGGTA-1",
                                "AAGGTTCAGAGTACAT-1",
                                "AAGGTTCTCAGCCTAA-1",
                                "AAGGTTCTCTTGCAAG-1",
                                "AAGTCTGCAAGCTGTT-1",
                                "AAGTCTGGTCTGATCA-1",
                                "AAGTCTGTCAAAGTAG-1",
                                "AAGTCTGTCACATACG-1",
                                "AATCCAGAGTGGAGTC-1",
                                "AATCCAGAGTTCGATC-1",
                                "AATCCAGCAAGGACTG-1",
                                "AATCCAGTCCTTGCCA-1",
                                "AATCGGTAGATCCGAG-1",
                                "AATCGGTAGCGCTTAT-1",
                                "AATCGGTAGGGCACTA-1",
                                "AATCGGTTCCGCGGTA-1",
                                "ACACCAAAGTTATCGC-1",
                                "ACACCAACATCACGAT-1",
                                "ACACCAAGTGAAAGAG-1",
                                "ACACCAAGTGCACTTA-1",
                                "ACACCCTAGAAGGGTA-1",
                                "ACACCCTCAGACTCGC-1",
                                "ACACCCTGTTCCATGA-1",
                                "ACACCGGCAGCTGTGC-1",
                                "ACACCGGCAGGGTTAG-1",
                                "ACACCGGCAGTAAGAT-1",
                                "ACACCGGGTGCGATAG-1",
                                "ACACCGGTCAGCACAT-1",
                                "ACACTGACAGACACTT-1",
                                "ACAGCCGGTACCGAGA-1",
                                "ACAGCCGGTCGACTAT-1",
                                "ACAGCTAAGCTGAACG-1",
                                "ACAGCTACACCGAATT-1",
                                "ACAGCTACATAGGATA-1",
                                "ACAGCTATCACAACGT-1",
                                "ACAGCTATCAGGTAAA-1",
                                "ACATACGCAGGTGCCT-1",
                                "ACATACGGTCTTGTCC-1",
                                "ACATACGTCAGTTGAC-1",
                                "ACATACGTCATACGGT-1",
                                "ACATACGTCCGCGGTA-1",
                                "ACATACGTCGTTTAGG-1",
                                "ACATCAGAGATGTCGG-1",
                                "ACATCAGCAAGTCTAC-1",
                                "ACATCAGCAGGAATCG-1",
                                "ACATCAGGTACCATCA-1",
                                "ACATCAGGTCTCTTTA-1",
                                "ACATCAGTCACAAACC-1",
                                "ACATCAGTCATACGGT-1",
                                "ACATCAGTCCTGCAGG-1",
                                "ACATCAGTCTTTACGT-1",
                                "ACATGGTAGGTGATAT-1",
                                "ACATGGTAGTTAGGTA-1",
                                "ACATGGTAGTTGAGTA-1",
                                "ACATGGTCAGGAACGT-1",
                                "ACATGGTTCGCTAGCG-1",
                                "ACATGGTTCTTGTACT-1",
                                "ACCAGTATCATCGGAT-1",
                                "ACCCACTAGTATCTCG-1",
                                "ACCCACTCACCAGTTA-1",
                                "ACCCACTGTATATGAG-1",
                                "ACCCACTGTCATACTG-1",
                                "ACCGTAAAGAATTGTG-1",
                                "ACCGTAAAGACAGGCT-1",
                                "ACCGTAAAGCACGCCT-1",
                                "ACCGTAAAGGATGGTC-1",
                                "ACCGTAACAGTCGTGC-1",
                                "ACCGTAATCAATCACG-1",
                                "ACCGTAATCACATAGC-1",
                                "ACCGTAATCAGCAACT-1",
                                "ACCTTTAAGAGCCTAG-1",
                                "ACCTTTAAGAGTACAT-1",
                                "ACCTTTAAGCTGCAAG-1",
                                "ACCTTTAAGTTCCACA-1",
                                "ACCTTTACAGCTGTTA-1",
                                "ACCTTTACATCCTTGC-1",
                                "ACCTTTAGTAGAAAGG-1",
                                "ACCTTTATCAAGGTAA-1",
                                "ACCTTTATCGCGGATC-1",
                                "ACGAGCCCACAGGTTT-1",
                                "ACGAGCCCAGCGTAAG-1",
                                "ACGAGCCGTTACGTCA-1",
                                "ACGAGCCGTTCCATGA-1",
                                "ACGAGCCTCCAGAGGA-1",
                                "ACGAGCCTCTTTAGTC-1",
                                "ACGAGGACAAGACACG-1",
                                "ACGAGGACATACGCCG-1",
                                "ACGAGGAGTCATCGGC-1",
                                "ACGAGGAGTTTGTTTC-1",
                                "ACGAGGATCTGTCTCG-1",
                                "ACGATACAGAAGGGTA-1",
                                "ACGATGTAGCCACGCT-1",
                                "ACGATGTCAGCCTTGG-1",
                                "ACGATGTCAGTACACT-1",
                                "ACGCAGCAGAAGGCCT-1",
                                "ACGCAGCAGGCATGGT-1",
                                "ACGCAGCCATGCCCGA-1",
                                "ACGCAGCGTCAGAATA-1",
                                "ACGCAGCGTCTCCATC-1",
                                "ACGCAGCTCTGTCAAG-1",
                                "ACGCCAGAGATCGATA-1",
                                "ACGCCAGAGCCTTGAT-1",
                                "ACGCCAGAGGTCGGAT-1",
                                "ACGCCAGCAAGCTGAG-1",
                                "ACGCCAGCACGAGAGT-1",
                                "ACGCCGAAGCTTTGGT-1",
                                "ACGCCGACACAGGAGT-1",
                                "ACGCCGACAGCTGCTG-1",
                                "ACGGAGAAGGCTCAGA-1",
                                "ACGGAGACAAGTAATG-1",
                                "ACGGCCACAGCCACCA-1",
                                "ACGGCCATCAAGGTAA-1",
                                "ACGGCCATCGGTCTAA-1",
                                "ACGGGCTAGTACGCGA-1",
                                "ACGGGCTCACATAACC-1",
                                "ACGGGCTCATTGAGCT-1",
                                "ACGGGCTGTAAGTGGC-1",
                                "ACGGGCTGTAAGTTCC-1",
                                "ACGGGCTGTCGTTGTA-1",
                                "ACGGGTCAGCCGCCTA-1",
                                "ACGGGTCAGCTAGCCC-1",
                                "ACGGGTCAGGCGTACA-1",
                                "ACGGGTCAGTTTGCGT-1",
                                "ACGGGTCCACTTACGA-1",
                                "ACGGGTCCAGGTGGAT-1",
                                "ACGGGTCCAGTGAGTG-1",
                                "ACGGGTCTCGCCGTGA-1",
                                "ACGGGTCTCTGCGTAA-1",
                                "ACGTCAAAGCTGGAAC-1",
                                "ACGTCAACATGCGCAC-1",
                                "ACGTCAAGTGATAAGT-1",
                                "ACGTCAATCCTGCTTG-1",
                                "ACTATCTAGACGCAAC-1",
                                "ACTATCTAGGTAAACT-1",
                                "ACTATCTCACACCGAC-1",
                                "ACTATCTCACTGAAGG-1",
                                "ACTATCTGTAGCCTAT-1",
                                "ACTATCTTCATGTCTT-1",
                                "ACTATCTTCGCGCCAA-1",
                                "ACTGAACAGTAGGTGC-1",
                                "ACTGAACGTCGACTGC-1",
                                "ACTGAACGTGCACCAC-1",
                                "ACTGAACGTGCGATAG-1",
                                "ACTGAGTAGAAGAAGC-1",
                                "ACTGAGTAGTTCGCGC-1",
                                "ACTGAGTCATCCGTGG-1",
                                "ACTGAGTGTACGCTGC-1",
                                "ACTGAGTTCGCGATCG-1",
                                "ACTGAGTTCGTGACAT-1",
                                "ACTGATGAGATGAGAG-1",
                                "ACTGATGAGGTGTTAA-1",
                                "ACTGATGAGTATTGGA-1",
                                "ACTGATGCAAGTCTAC-1",
                                "ACTGATGCACAACGTT-1",
                                "ACTGATGCAGCCTGTG-1",
                                "ACTGATGCAGGAATCG-1",
                                "ACTGCTCGTAGCGTGA-1",
                                "ACTGCTCGTCACTTCC-1",
                                "ACTGCTCTCTTGACGA-1",
                                "ACTGTCCTCTCTGAGA-1",
                                "ACTTACTAGATGGGTC-1",
                                "ACTTACTCATCTCGCT-1",
                                "ACTTACTTCCAAACTG-1",
                                "ACTTGTTCATTGGTAC-1",
                                "ACTTGTTGTGCAGACA-1",
                                "ACTTTCACATCACGTA-1",
                                "ACTTTCAGTACTCTCC-1",
                                "ACTTTCAGTCAAACTC-1",
                                "ACTTTCATCCAAATGC-1",
                                "AGAATAGAGCTGCGAA-1",
                                "AGAATAGAGTGGAGAA-1",
                                "AGAATAGCAAGCTGTT-1",
                                "AGAATAGCAGGTGCCT-1",
                                "AGAATAGGTCACCTAA-1",
                                "AGAATAGTCCACGACG-1",
                                "AGACGTTAGTGACATA-1",
                                "AGACGTTAGTGCCATT-1",
                                "AGACGTTCATTTCACT-1",
                                "AGACGTTGTAGGACAC-1",
                                "AGACGTTGTCGGCACT-1",
                                "AGACGTTTCAGCATGT-1",
                                "AGAGCGAAGAGCCCAA-1",
                                "AGAGCGAAGTGAAGTT-1",
                                "AGAGCGACACAGACTT-1",
                                "AGAGCTTAGTGAACGC-1",
                                "AGAGTGGCAAGAAGAG-1",
                                "AGAGTGGGTTACTGAC-1",
                                "AGATCTGAGATGCCTT-1",
                                "AGATCTGAGGCGATAC-1",
                                "AGATCTGCAGTCAGAG-1",
                                "AGATCTGGTCTTGTCC-1",
                                "AGATCTGTCCAGATCA-1",
                                "AGATCTGTCCCTTGCA-1",
                                "AGATCTGTCCGTCAAA-1",
                                "AGATTGCCAAATCCGT-1",
                                "AGATTGCCATCTCGCT-1",
                                "AGCAGCCAGCGATCCC-1",
                                "AGCAGCCAGTTAGGTA-1",
                                "AGCAGCCCACGCGAAA-1",
                                "AGCAGCCCAGCTTAAC-1",
                                "AGCAGCCCATCCTAGA-1",
                                "AGCAGCCCATTAACCG-1",
                                "AGCAGCCCATTTGCTT-1",
                                "AGCAGCCGTGTTTGGT-1",
                                "AGCAGCCGTTCCAACA-1",
                                "AGCAGCCTCACGCATA-1",
                                "AGCAGCCTCCCACTTG-1",
                                "AGCATACAGGAGTTTA-1",
                                "AGCATACAGGCACATG-1",
                                "AGCATACCACTCGACG-1",
                                "AGCATACCAGCTCGCA-1",
                                "AGCATACGTCTGCGGT-1",
                                "AGCATACGTGGTGTAG-1",
                                "AGCCTAAAGATGAGAG-1",
                                "AGCCTAAAGTGCGATG-1",
                                "AGCCTAACAACACCTA-1",
                                "AGCCTAACAGTAACGG-1",
                                "AGCCTAAGTTCGTCTC-1",
                                "AGCCTAAGTTCTGTTT-1",
                                "AGCGGTCTCACTCCTG-1",
                                "AGCGGTCTCGTTTAGG-1",
                                "AGCGTATAGGAATTAC-1",
                                "AGCGTATAGGATGTAT-1",
                                "AGCGTATAGTGTTTGC-1",
                                "AGCGTATCAAGAAGAG-1",
                                "AGCGTCGCATGGGACA-1",
                                "AGCTCCTAGCGCTTAT-1",
                                "AGCTCCTAGGGAGTAA-1",
                                "AGCTCCTCAAGACGTG-1",
                                "AGCTCCTTCTTGCCGT-1",
                                "AGCTCTCCAATGACCT-1",
                                "AGCTCTCCAGCTCCGA-1",
                                "AGCTCTCGTGGTCTCG-1",
                                "AGCTCTCTCATCACCC-1",
                                "AGCTCTCTCTCTTGAT-1",
                                "AGCTTGAAGGACACCA-1",
                                "AGCTTGACATACCATG-1",
                                "AGCTTGAGTGATAAGT-1",
                                "AGGCCACCACCTCGTT-1",
                                "AGGCCACTCATCTGTT-1",
                                "AGGCCACTCCTTTACA-1",
                                "AGGCCACTCTGATACG-1",
                                "AGGCCGTAGAACAATC-1",
                                "AGGCCGTAGGCAAAGA-1",
                                "AGGCCGTCACTATCTT-1",
                                "AGGCCGTTCGTTGCCT-1",
                                "AGGGAGTCAAGCTGTT-1",
                                "AGGGAGTGTCTAACGT-1",
                                "AGGGAGTGTGGTCTCG-1",
                                "AGGGATGAGGCGTACA-1",
                                "AGGGATGCAATAAGCA-1",
                                "AGGGATGCACCCATTC-1",
                                "AGGGATGCAGGGATTG-1",
                                "AGGGATGGTAAACACA-1",
                                "AGGGATGGTAGCGTGA-1",
                                "AGGGATGGTGTGGTTT-1",
                                "AGGGATGTCAACGGCC-1",
                                "AGGGATGTCAGGCCCA-1",
                                "AGGGATGTCCCTAATT-1",
                                "AGGGATGTCTTGAGAC-1",
                                "AGGGTGACACCATCCT-1",
                                "AGGGTGACAGCTCGCA-1",
                                "AGGGTGAGTACCGCTG-1",
                                "AGGGTGATCACATACG-1",
                                "AGGGTGATCTGGCGAC-1",
                                "AGGTCATCACTACAGT-1",
                                "AGGTCATGTGATGTGG-1",
                                "AGGTCATGTTATCCGA-1",
                                "AGGTCCGAGCTCAACT-1",
                                "AGGTCCGCATAGACTC-1",
                                "AGGTCCGTCTTATCTG-1",
                                "AGTAGTCAGATCACGG-1",
                                "AGTAGTCAGGCATGGT-1",
                                "AGTAGTCCAGATAATG-1",
                                "AGTAGTCCATTGCGGC-1",
                                "AGTAGTCGTCAGCTAT-1",
                                "AGTAGTCTCCGTTGTC-1",
                                "AGTAGTCTCTAACCGA-1",
                                "AGTCTTTAGATCCTGT-1",
                                "AGTCTTTAGGGAACGG-1",
                                "AGTCTTTAGTTAGCGG-1",
                                "AGTCTTTCATCACGTA-1",
                                "AGTCTTTGTATGGTTC-1",
                                "AGTCTTTGTGCAGGTA-1",
                                "AGTCTTTTCAACGCTA-1",
                                "AGTCTTTTCTTCGGTC-1",
                                "AGTGAGGAGTCCTCCT-1",
                                "AGTGAGGAGTGTGGCA-1",
                                "AGTGAGGCAAGACGTG-1",
                                "AGTGAGGCACACTGCG-1",
                                "AGTGAGGGTTCGCGAC-1",
                                "AGTGAGGGTTGACGTT-1",
                                "AGTGAGGTCTTTAGGG-1",
                                "AGTGGGAAGCTAACTC-1",
                                "AGTGGGACACGAAACG-1",
                                "AGTGGGACACTTACGA-1",
                                "AGTGGGAGTACGAAAT-1",
                                "AGTGGGAGTAGCGTAG-1",
                                "AGTGGGATCTGATTCT-1",
                                "AGTGTCAAGCGTCTAT-1",
                                "AGTGTCACATATGGTC-1",
                                "AGTGTCATCAGCCTAA-1",
                                "AGTTGGTCAGGTGCCT-1",
                                "ATAACGCAGCTTCGCG-1",
                                "ATAAGAGAGTATGACA-1",
                                "ATAAGAGCACCGAAAG-1",
                                "ATAAGAGCAGGCTGAA-1",
                                "ATAAGAGGTCTAGTCA-1",
                                "ATAGACCCACGGATAG-1",
                                "ATAGACCGTTTGTTGG-1",
                                "ATCACGAAGATGCCAG-1",
                                "ATCACGAGTGCGAAAC-1",
                                "ATCACGATCGAATGGG-1",
                                "ATCACGATCGGCTACG-1",
                                "ATCACGATCTCCCTGA-1",
                                "ATCATCTAGAACTGTA-1",
                                "ATCATCTAGCAGACTG-1",
                                "ATCATCTAGGGCTTCC-1",
                                "ATCATCTAGTGTACGG-1",
                                "ATCATCTAGTTGCAGG-1",
                                "ATCATCTCACATCTTT-1",
                                "ATCATCTGTAATTGGA-1",
                                "ATCATGGCAAGTCATC-1",
                                "ATCATGGTCTCGTATT-1",
                                "ATCCACCCAATCCGAT-1",
                                "ATCCACCCAATGTTGC-1",
                                "ATCCACCTCAGGCAAG-1",
                                "ATCCACCTCCGTCAAA-1",
                                "ATCCACCTCTTATCTG-1",
                                "ATCCGAAAGAGGGCTT-1",
                                "ATCCGAAAGTTAGGTA-1",
                                "ATCCGAAAGTTGAGTA-1",
                                "ATCCGAACATGGGAAC-1",
                                "ATCCGAATCAACACTG-1",
                                "ATCCGAATCAGCTGGC-1",
                                "ATCCGAATCGGTTCGG-1",
                                "ATCGAGTCAACTGGCC-1",
                                "ATCGAGTCACCCATGG-1",
                                "ATCGAGTCAGCTGTTA-1",
                                "ATCGAGTTCGGCGCAT-1",
                                "ATCTACTAGGACCACA-1",
                                "ATCTACTCACCGAATT-1",
                                "ATCTACTCACGCCAGT-1",
                                "ATCTACTCAGGACCCT-1",
                                "ATCTACTTCACCCGAG-1",
                                "ATCTACTTCAGAGACG-1",
                                "ATCTGCCAGACTAGAT-1",
                                "ATCTGCCAGCGATGAC-1",
                                "ATCTGCCCACACTGCG-1",
                                "ATCTGCCCACGCCAGT-1",
                                "ATCTGCCTCAGGCGAA-1",
                                "ATGAGGGAGGATATAC-1",
                                "ATGAGGGCACGGCCAT-1",
                                "ATGAGGGTCAACACGT-1",
                                "ATGCGATCAGGGATTG-1",
                                "ATGTGTGAGAAACCTA-1",
                                "ATGTGTGAGGGATACC-1",
                                "ATGTGTGGTCAGAATA-1",
                                "ATTACTCCAAGGACTG-1",
                                "ATTACTCCAAGGTGTG-1",
                                "ATTACTCCAGCTCGCA-1",
                                "ATTACTCCATCACGAT-1",
                                "ATTACTCGTGGTCCGT-1",
                                "ATTACTCTCGACCAGC-1",
                                "ATTATCCTCTTTAGTC-1",
                                "ATTCTACAGGAATGGA-1",
                                "ATTCTACAGTCGAGTG-1",
                                "ATTGGACAGATGCCTT-1",
                                "ATTGGACAGTACTTGC-1",
                                "ATTGGACCAGCATACT-1",
                                "ATTGGACTCGTTTATC-1",
                                "ATTGGTGAGATAGGAG-1",
                                "ATTGGTGTCACTTATC-1",
                                "ATTTCTGCACAGATTC-1",
                                "ATTTCTGCACCAGCAC-1",
                                "ATTTCTGCAGACGCAA-1",
                                "ATTTCTGGTCGCCATG-1",
                                "CAACCAAAGAGAACAG-1",
                                "CAACCAAAGAGTACCG-1",
                                "CAACCAAAGCTGCAAG-1",
                                "CAACCAATCCTCATTA-1",
                                "CAACCAATCGCGATCG-1",
                                "CAACCTCAGTAGCCGA-1",
                                "CAACCTCAGTCGATAA-1",
                                "CAACCTCGTGCCTGTG-1",
                                "CAACCTCTCAGGCAAG-1",
                                "CAACCTCTCCACGACG-1",
                                "CAACTAGCACGCCAGT-1",
                                "CAACTAGCACGGTAGA-1",
                                "CAACTAGGTGCACGAA-1",
                                "CAACTAGGTGTGCCTG-1",
                                "CAACTAGGTTCCACGG-1",
                                "CAACTAGTCTCGTATT-1",
                                "CAAGAAACAACACCCG-1",
                                "CAAGAAAGTTGGGACA-1",
                                "CAAGATCAGTTTAGGA-1",
                                "CAAGATCCAATGCCAT-1",
                                "CAAGATCTCTCCGGTT-1",
                                "CAAGATCTCTTAGCCC-1",
                                "CAAGGCCCAGTGAGTG-1",
                                "CAAGGCCTCCTAGGGC-1",
                                "CAAGTTGAGCCACCTG-1",
                                "CAAGTTGAGTCATCCA-1",
                                "CAAGTTGAGTTCCACA-1",
                                "CAAGTTGCAAGGACTG-1",
                                "CAAGTTGCACATCCGG-1",
                                "CAAGTTGCAGACAAGC-1",
                                "CAAGTTGCAGGAACGT-1",
                                "CAAGTTGGTCGAGTTT-1",
                                "CAAGTTGGTTCAGTAC-1",
                                "CAAGTTGTCTAGCACA-1",
                                "CACAAACAGAAACCTA-1",
                                "CACAAACAGAAGAAGC-1",
                                "CACAAACAGCCCAATT-1",
                                "CACAAACAGTACTTGC-1",
                                "CACAAACGTCATGCCG-1",
                                "CACAAACGTCGAGATG-1",
                                "CACACAAAGCTAGCCC-1",
                                "CACACCTAGAGCTATA-1",
                                "CACACCTCACGAAAGC-1",
                                "CACACCTCAGTATCTG-1",
                                "CACACCTTCAACACTG-1",
                                "CACACCTTCAGTGCAT-1",
                                "CACACCTTCTGTCCGT-1",
                                "CACACTCAGACCTTTG-1",
                                "CACACTCAGCGTGAGT-1",
                                "CACACTCAGGATGTAT-1",
                                "CACACTCTCGGCGCTA-1",
                                "CACAGGCAGACTCGGA-1",
                                "CACAGGCAGATTACCC-1",
                                "CACAGGCAGTATCTCG-1",
                                "CACAGGCCACACCGCA-1",
                                "CACAGGCCACTGTCGG-1",
                                "CACAGGCCAGTATCTG-1",
                                "CACAGGCGTCTAGCCG-1",
                                "CACAGGCGTCTCAACA-1",
                                "CACAGGCTCCCGGATG-1",
                                "CACAGGCTCGCTAGCG-1",
                                "CACAGTAAGCTAGCCC-1",
                                "CACAGTACAAAGTGCG-1",
                                "CACAGTACAGTCAGAG-1",
                                "CACAGTATCAGCATGT-1",
                                "CACAGTATCCCTCTTT-1",
                                "CACATAGTCACGAAGG-1",
                                "CACATAGTCTAACTGG-1",
                                "CACATTTCAAGCCGTC-1",
                                "CACATTTCAAGTAGTA-1",
                                "CACATTTCACTCGACG-1",
                                "CACATTTCATTTGCCC-1",
                                "CACATTTGTCGCATCG-1",
                                "CACATTTGTGTGACCC-1",
                                "CACATTTGTTCCCTTG-1",
                                "CACATTTTCTTCCTTC-1",
                                "CACCACTAGCATGGCA-1",
                                "CACCACTCAAGCCGCT-1",
                                "CACCACTGTCCCGACA-1",
                                "CACCAGGAGGTCGGAT-1",
                                "CACCTTGCAGCAGTTT-1",
                                "CACCTTGGTAATCACC-1",
                                "CACCTTGGTCCCTACT-1",
                                "CACTCCAAGAGTTGGC-1",
                                "CACTCCAAGCTGAACG-1",
                                "CACTCCAAGGTGACCA-1",
                                "CACTCCACAAGCCGTC-1",
                                "CACTCCACAATGGACG-1",
                                "CACTCCACAGCCAGAA-1",
                                "CAGAATCAGAGGTTAT-1",
                                "CAGAATCGTGCGGTAA-1",
                                "CAGAATCGTTATTCTC-1",
                                "CAGAGAGCACATCTTT-1",
                                "CAGAGAGGTGTTCTTT-1",
                                "CAGAGAGGTTGATTGC-1",
                                "CAGAGAGTCTGCTTGC-1",
                                "CAGATCACACACTGCG-1",
                                "CAGATCACAGTTCATG-1",
                                "CAGATCATCAATAAGG-1",
                                "CAGCAGCCACAGGCCT-1",
                                "CAGCAGCCACCGATAT-1",
                                "CAGCAGCCAGGATTGG-1",
                                "CAGCAGCGTTCTGTTT-1",
                                "CAGCAGCTCACTTACT-1",
                                "CAGCATAAGTGGTCCC-1",
                                "CAGCCGAAGGACGAAA-1",
                                "CAGCCGACAGAGCCAA-1",
                                "CAGCCGACATCCTAGA-1",
                                "CAGCCGAGTGTGCCTG-1",
                                "CAGCGACAGGACAGCT-1",
                                "CAGCGACCACGCATCG-1",
                                "CAGCGACGTGTCGCTG-1",
                                "CAGCGACTCTGCCAGG-1",
                                "CAGCTAAAGAAGATTC-1",
                                "CAGCTAAAGTAAGTAC-1",
                                "CAGCTAAAGTTCGATC-1",
                                "CAGCTAACACGACTCG-1",
                                "CAGCTGGTCAGTTTGG-1",
                                "CAGCTGGTCGTGGGAA-1",
                                "CAGGTGCTCCAAACAC-1",
                                "CAGGTGCTCCCTTGCA-1",
                                "CAGTAACCAGACACTT-1",
                                "CAGTAACTCAGTGCAT-1",
                                "CAGTAACTCATAGCAC-1",
                                "CAGTAACTCCTAGAAC-1",
                                "CAGTAACTCTGCTTGC-1",
                                "CAGTCCTAGCTAAGAT-1",
                                "CAGTCCTAGTCTCGGC-1",
                                "CAGTCCTCAGTGGGAT-1",
                                "CAGTCCTCATGTCCTC-1",
                                "CATATGGAGGGATCTG-1",
                                "CATATGGCAGAAGCAC-1",
                                "CATATGGGTGTATGGG-1",
                                "CATATTCTCATTCACT-1",
                                "CATCAAGAGGTGCTAG-1",
                                "CATCAAGTCTTCAACT-1",
                                "CATCAGAAGATCCTGT-1",
                                "CATCAGAAGATGGGTC-1",
                                "CATCAGAAGTAGGCCA-1",
                                "CATCAGACATCGTCGG-1",
                                "CATCCACAGTAAGTAC-1",
                                "CATCCACCAATAGCGG-1",
                                "CATCCACCATGCAACT-1",
                                "CATCCACTCGCCTGAG-1",
                                "CATCGAAAGCCCGAAA-1",
                                "CATCGAAGTGGTAACG-1",
                                "CATCGAATCCAAAGTC-1",
                                "CATCGGGAGTTTCCTT-1",
                                "CATCGGGCACTTAAGC-1",
                                "CATCGGGTCCATTCTA-1",
                                "CATGACAAGACAATAC-1",
                                "CATGACAAGATAGCAT-1",
                                "CATGACAAGGACTGGT-1",
                                "CATGACATCATGCAAC-1",
                                "CATGCCTCATTGAGCT-1",
                                "CATGCCTTCGAGAGCA-1",
                                "CATGGCGAGGCTATCT-1",
                                "CATGGCGAGTACGTAA-1",
                                "CATGGCGGTCCATGAT-1",
                                "CATGGCGTCCACGACG-1",
                                "CATGGCGTCTCTGAGA-1",
                                "CATTATCAGATAGGAG-1",
                                "CATTATCGTAGGAGTC-1",
                                "CATTATCTCGAACGGA-1",
                                "CATTATCTCTGCGACG-1",
                                "CATTCGCAGAATTGTG-1",
                                "CATTCGCCACCAGCAC-1",
                                "CATTCGCCATGGATGG-1",
                                "CATTCGCGTAGTACCT-1",
                                "CATTCGCGTCACCCAG-1",
                                "CATTCGCGTGAGTGAC-1",
                                "CATTCGCTCTCTTATG-1",
                                "CCAATCCAGTGAACAT-1",
                                "CCAATCCCAGGCGATA-1",
                                "CCAATCCGTAAGTGTA-1",
                                "CCAATCCGTGATGTCT-1",
                                "CCAATCCTCCCTAATT-1",
                                "CCACCTAAGTTGAGAT-1",
                                "CCACCTACAAGGACTG-1",
                                "CCACCTAGTCCTAGCG-1",
                                "CCACCTATCCAGTAGT-1",
                                "CCACGGACAAGCCTAT-1",
                                "CCACGGATCGAGAGCA-1",
                                "CCACTACCATAAGACA-1",
                                "CCACTACCATCACCCT-1",
                                "CCAGCGAAGAAGATTC-1",
                                "CCATGTCCATAGAAAC-1",
                                "CCATGTCGTCGCTTCT-1",
                                "CCATTCGTCGACCAGC-1",
                                "CCCAATCCAAGCTGAG-1",
                                "CCCAATCCAGCTGCAC-1",
                                "CCCAATCCATAAGACA-1",
                                "CCCAATCGTCCGTTAA-1",
                                "CCCAATCTCTGACCTC-1",
                                "CCCAGTTAGTACGCGA-1",
                                "CCCAGTTCATTCTTAC-1",
                                "CCCAGTTGTAAGGGAA-1",
                                "CCCAGTTGTGAAAGAG-1",
                                "CCCAGTTTCACTATTC-1",
                                "CCCAGTTTCCAATGGT-1",
                                "CCCAGTTTCTAACGGT-1",
                                "CCCATACCAGATAATG-1",
                                "CCCATACGTTTGTGTG-1",
                                "CCCATACTCCAAGTAC-1",
                                "CCCTCCTAGAGTAAGG-1",
                                "CCGGGATAGAAACGAG-1",
                                "CCGGGATCATTGTGCA-1",
                                "CCGGGATTCATGCAAC-1",
                                "CCGGTAGAGAACAACT-1",
                                "CCGGTAGAGAGCTGCA-1",
                                "CCGGTAGAGTACGATA-1",
                                "CCGGTAGCATTCCTGC-1",
                                "CCGGTAGTCGAATCCA-1",
                                "CCGTACTAGCTAGTGG-1",
                                "CCGTACTAGGTGCTTT-1",
                                "CCGTACTAGTAAGTAC-1",
                                "CCGTACTCATACGCTA-1",
                                "CCGTACTCATCACCCT-1",
                                "CCGTGGAAGACCTAGG-1",
                                "CCGTGGACAAGAAGAG-1",
                                "CCGTGGACAATAGAGT-1",
                                "CCGTGGAGTACAAGTA-1",
                                "CCGTGGAGTGATGATA-1",
                                "CCGTGGATCGGCGGTT-1",
                                "CCGTTCAAGTGCTGCC-1",
                                "CCGTTCACAGCTTCGG-1",
                                "CCGTTCATCACTCCTG-1",
                                "CCGTTCATCTTGCATT-1",
                                "CCTAAAGCAGTCAGAG-1",
                                "CCTAAAGTCTGAGGGA-1",
                                "CCTACACAGGGTCTCC-1",
                                "CCTACACGTAAACGCG-1",
                                "CCTACACGTAGCAAAT-1",
                                "CCTACCAAGCAGCGTA-1",
                                "CCTACCACATCCGGGT-1",
                                "CCTACCAGTAGCCTCG-1",
                                "CCTACCATCGCATGAT-1",
                                "CCTAGCTCACACTGCG-1",
                                "CCTAGCTCATATACCG-1",
                                "CCTAGCTTCACTATTC-1",
                                "CCTAGCTTCTGAGTGT-1",
                                "CCTATTAAGACTCGGA-1",
                                "CCTATTAAGGCTAGGT-1",
                                "CCTATTAGTTGAGTTC-1",
                                "CCTATTAGTTGTACAC-1",
                                "CCTCTGACAGCCACCA-1",
                                "CCTTACGAGCCACGCT-1",
                                "CCTTACGCAATCACAC-1",
                                "CCTTACGGTGTGAAAT-1",
                                "CCTTACGGTTACGACT-1",
                                "CCTTACGTCAAAGTAG-1",
                                "CCTTACGTCGTCCGTT-1",
                                "CCTTCCCTCATACGGT-1",
                                "CCTTCCCTCGCCATAA-1",
                                "CCTTCCCTCTCACATT-1",
                                "CCTTCGAGTCACTTCC-1",
                                "CCTTCGAGTCTCAACA-1",
                                "CCTTCGAGTTTGACAC-1",
                                "CCTTCGATCTAGCACA-1",
                                "CCTTTCTCAGATGGCA-1",
                                "CCTTTCTGTAGGACAC-1",
                                "CCTTTCTGTGTGGTTT-1",
                                "CCTTTCTTCGGTCCGA-1",
                                "CGAACATAGGGCACTA-1",
                                "CGAACATAGTACGACG-1",
                                "CGAACATAGTGGCACA-1",
                                "CGAACATGTACCGTAT-1",
                                "CGAATGTAGAAAGTGG-1",
                                "CGAATGTCATGTTCCC-1",
                                "CGAATGTGTGAAGGCT-1",
                                "CGAATGTGTGGACGAT-1",
                                "CGAATGTGTGTGAATA-1",
                                "CGAATGTTCATATCGG-1",
                                "CGAATGTTCTAGAGTC-1",
                                "CGAATGTTCTTGTACT-1",
                                "CGACCTTCAGCTTAAC-1",
                                "CGACCTTCATAGTAAG-1",
                                "CGACCTTTCCACGAAT-1",
                                "CGACTTCAGAGTGACC-1",
                                "CGACTTCAGGAGCGAG-1",
                                "CGACTTCCACGTGAGA-1",
                                "CGACTTCTCCCAACGG-1",
                                "CGACTTCTCTCCGGTT-1",
                                "CGAGAAGAGAACAACT-1",
                                "CGAGAAGAGTTAGCGG-1",
                                "CGAGAAGTCTGCCAGG-1",
                                "CGAGCACCACGGTAAG-1",
                                "CGAGCACGTAGCACGA-1",
                                "CGAGCACGTTAAGGGC-1",
                                "CGAGCACTCGATAGAA-1",
                                "CGAGCACTCTTCAACT-1",
                                "CGAGCCAAGACTCGGA-1",
                                "CGAGCCAAGATAGGAG-1",
                                "CGAGCCAAGATGGCGT-1",
                                "CGAGCCAAGCCCAACC-1",
                                "CGAGCCAAGCGTTTAC-1",
                                "CGAGCCACAAGGACTG-1",
                                "CGAGCCACACCAGTTA-1",
                                "CGAGCCACATTTCACT-1",
                                "CGATCGGAGCTGTCTA-1",
                                "CGATCGGAGGAATCGC-1",
                                "CGATCGGCAGTACACT-1",
                                "CGATCGGCATAACCTG-1",
                                "CGATCGGGTCAACATC-1",
                                "CGATCGGGTGATAAAC-1",
                                "CGATCGGTCTGACCTC-1",
                                "CGATGGCAGTGTACGG-1",
                                "CGATGGCCAGCTGCTG-1",
                                "CGATGGCCATACTCTT-1",
                                "CGATGGCCATATACGC-1",
                                "CGATGGCCATCCTTGC-1",
                                "CGATGTACAATCAGAA-1",
                                "CGATGTACATTCCTCG-1",
                                "CGATGTAGTTATTCTC-1",
                                "CGATGTAGTTTGTGTG-1",
                                "CGATGTATCCAGATCA-1",
                                "CGATGTATCGTCACGG-1",
                                "CGATTGAAGCCACTAT-1",
                                "CGATTGAGTCGCTTCT-1",
                                "CGATTGATCAACACTG-1",
                                "CGCCAAGTCCAGTATG-1",
                                "CGCGGTACAATAACGA-1",
                                "CGCGGTACAGCATGAG-1",
                                "CGCGTTTAGAACAACT-1",
                                "CGCGTTTGTCGAACAG-1",
                                "CGCGTTTTCCAGAAGG-1",
                                "CGCGTTTTCTTTAGGG-1",
                                "CGCTATCAGCACCGCT-1",
                                "CGCTATCCAAACTGCT-1",
                                "CGCTATCTCCCAACGG-1",
                                "CGCTATCTCTATCCTA-1",
                                "CGCTATCTCTGACCTC-1",
                                "CGCTGGAAGACTTTCG-1",
                                "CGCTGGACAATCTACG-1",
                                "CGCTGGACAATGTAAG-1",
                                "CGCTGGACAGATGGGT-1",
                                "CGCTGGAGTACCGAGA-1",
                                "CGCTTCAAGTAGCGGT-1",
                                "CGCTTCACACGAGAGT-1",
                                "CGGACACAGGATGGTC-1",
                                "CGGACACCACCGATAT-1",
                                "CGGACACCAGTTCCCT-1",
                                "CGGACACTCGGCGCAT-1",
                                "CGGACACTCTGCAAGT-1",
                                "CGGACGTCATACTCTT-1",
                                "CGGACGTGTCTCCACT-1",
                                "CGGACTGGTAAATACG-1",
                                "CGGACTGGTCCAGTTA-1",
                                "CGGAGCTCAAGGACTG-1",
                                "CGGAGCTCACAAGCCC-1",
                                "CGGAGCTCACGGTAGA-1",
                                "CGGAGCTCATGCGCAC-1",
                                "CGGAGCTGTCTAGCGC-1",
                                "CGGAGTCAGCCACGCT-1",
                                "CGGAGTCCATACGCCG-1",
                                "CGGAGTCTCATTGCCC-1",
                                "CGGCTAGAGCGATCCC-1",
                                "CGGCTAGCACGTTGGC-1",
                                "CGGCTAGCAGATGAGC-1",
                                "CGGCTAGGTCTAAACC-1",
                                "CGGCTAGGTCTCATCC-1",
                                "CGGCTAGTCATCGCTC-1",
                                "CGGCTAGTCTTCAACT-1",
                                "CGGGTCAAGTGAAGAG-1",
                                "CGGGTCACAACACCTA-1",
                                "CGGGTCACAAGTTGTC-1",
                                "CGGGTCACACCCTATC-1",
                                "CGGGTCATCAACGGCC-1",
                                "CGGTTAACAACTGCTA-1",
                                "CGGTTAATCCTCATTA-1",
                                "CGTAGCGTCCGAACGC-1",
                                "CGTAGGCCAGAGTGTG-1",
                                "CGTCACTAGCCTATGT-1",
                                "CGTCACTAGTCCATAC-1",
                                "CGTCACTCAGCCAGAA-1",
                                "CGTCACTCAGCGATCC-1",
                                "CGTCACTCATGTTGAC-1",
                                "CGTCACTGTAAGTAGT-1",
                                "CGTCACTGTCGAATCT-1",
                                "CGTCACTGTTATCGGT-1",
                                "CGTCAGGAGCTTCGCG-1",
                                "CGTCAGGAGGGAGTAA-1",
                                "CGTCAGGCAACACCTA-1",
                                "CGTCCATAGAAGATTC-1",
                                "CGTCCATAGAATTCCC-1",
                                "CGTCCATAGGCTCAGA-1",
                                "CGTCCATCAATTCCTT-1",
                                "CGTCCATGTCCGAGTC-1",
                                "CGTCCATGTCGCGTGT-1",
                                "CGTCCATTCCTGCCAT-1",
                                "CGTCCATTCTGTCTCG-1",
                                "CGTCTACCACTGTCGG-1",
                                "CGTGAGCAGCCGGTAA-1",
                                "CGTGAGCCAAACAACA-1",
                                "CGTGAGCCACTTAACG-1",
                                "CGTGAGCGTCTCTCTG-1",
                                "CGTGAGCTCGGCGCTA-1",
                                "CGTGTAAAGCACCGTC-1",
                                "CGTGTAAAGTCTCAAC-1",
                                "CGTGTAACAAGCGTAG-1",
                                "CGTGTAACATACCATG-1",
                                "CGTGTAATCGATAGAA-1",
                                "CGTGTAATCGTTGCCT-1",
                                "CGTGTCTCAACTGCTA-1",
                                "CGTGTCTCACGCATCG-1",
                                "CGTGTCTCAGTATGCT-1",
                                "CGTGTCTTCACTATTC-1",
                                "CGTTAGAAGGCTAGGT-1",
                                "CGTTAGAAGTCTTGCA-1",
                                "CGTTAGACAATAGCGG-1",
                                "CGTTAGATCAACACGT-1",
                                "CGTTAGATCCCGGATG-1",
                                "CGTTAGATCGCATGAT-1",
                                "CGTTCTGAGTAGCGGT-1",
                                "CGTTCTGCACAACTGT-1",
                                "CGTTCTGGTCAGCTAT-1",
                                "CGTTGGGCAAAGTGCG-1",
                                "CGTTGGGCAATGGACG-1",
                                "CGTTGGGTCAGATAAG-1",
                                "CGTTGGGTCGTCTGCT-1",
                                "CTAACTTCAGACGTAG-1",
                                "CTAACTTCATAAAGGT-1",
                                "CTAACTTTCAGTCCCT-1",
                                "CTAAGACCACCCTATC-1",
                                "CTAAGACCAGAGTGTG-1",
                                "CTAAGACGTCGTTGTA-1",
                                "CTAATGGAGGAGTAGA-1",
                                "CTAATGGGTTATCGGT-1",
                                "CTAATGGTCTAACTGG-1",
                                "CTACACCGTTGGTGGA-1",
                                "CTACACCTCGGATGGA-1",
                                "CTACACCTCTCAACTT-1",
                                "CTACATTCAGTCACTA-1",
                                "CTACCCAAGACTAAGT-1",
                                "CTACCCACACACATGT-1",
                                "CTACCCAGTTAAGGGC-1",
                                "CTACGTCAGGAATGGA-1",
                                "CTACGTCGTATATCCG-1",
                                "CTACGTCGTTTGCATG-1",
                                "CTACGTCTCGGAATCT-1",
                                "CTAGAGTAGCACACAG-1",
                                "CTAGAGTCACGACTCG-1",
                                "CTAGAGTCAGGGATTG-1",
                                "CTAGAGTTCACATACG-1",
                                "CTAGCCTAGTTGTAGA-1",
                                "CTAGCCTCAATAGCGG-1",
                                "CTAGCCTCAGCGATCC-1",
                                "CTAGCCTGTCCCGACA-1",
                                "CTAGCCTGTGGGTCAA-1",
                                "CTAGCCTGTGTGAATA-1",
                                "CTAGTGACACGAAACG-1",
                                "CTAGTGACAGACGTAG-1",
                                "CTAGTGACAGCGTTCG-1",
                                "CTAGTGAGTCCGCTGA-1",
                                "CTAGTGATCCATGAAC-1",
                                "CTCACACAGAACAATC-1",
                                "CTCACACAGAACTGTA-1",
                                "CTCACACAGACAATAC-1",
                                "CTCACACGTCTGCAAT-1",
                                "CTCACACTCATAGCAC-1",
                                "CTCACACTCCACGACG-1",
                                "CTCACACTCCGCATCT-1",
                                "CTCAGAAAGGACTGGT-1",
                                "CTCAGAACATGAGCGA-1",
                                "CTCAGAATCAATACCG-1",
                                "CTCATTACAGTTTACG-1",
                                "CTCATTAGTAAGGGAA-1",
                                "CTCATTAGTGGGTCAA-1",
                                "CTCCTAGAGCGTTGCC-1",
                                "CTCCTAGAGCTCCCAG-1",
                                "CTCCTAGAGGATGGTC-1",
                                "CTCCTAGCAGATCTGT-1",
                                "CTCCTAGTCCGCATAA-1",
                                "CTCGAAAAGACAATAC-1",
                                "CTCGAAAAGGGTTCCC-1",
                                "CTCGAAAAGTCGTTTG-1",
                                "CTCGAAACAAATTGCC-1",
                                "CTCGAAACAATAGAGT-1",
                                "CTCGAAACACCAGTTA-1",
                                "CTCGAAACACGACTCG-1",
                                "CTCGAAAGTGTTAAGA-1",
                                "CTCGAAATCTAACTTC-1",
                                "CTCGAGGAGCGTAATA-1",
                                "CTCGAGGAGCTTATCG-1",
                                "CTCGAGGCATTAGGCT-1",
                                "CTCGAGGTCACGCATA-1",
                                "CTCGGAGCAACACGCC-1",
                                "CTCGGAGCAGCCTATA-1",
                                "CTCGGAGGTCAACTGT-1",
                                "CTCGGAGGTCACACGC-1",
                                "CTCGGAGGTCGCTTTC-1",
                                "CTCGGAGTCACATAGC-1",
                                "CTCGGAGTCACGCGGT-1",
                                "CTCGGAGTCAGGCAAG-1",
                                "CTCGGAGTCATAACCG-1",
                                "CTCGGAGTCCGTAGTA-1",
                                "CTCGGGACACGAAGCA-1",
                                "CTCGGGAGTCCGTGAC-1",
                                "CTCGGGAGTTAAGATG-1",
                                "CTCGGGATCATACGGT-1",
                                "CTCGGGATCTCTTATG-1",
                                "CTCGTACCAAAGAATC-1",
                                "CTCGTACCAGCGATCC-1",
                                "CTCGTACCAGCTTAAC-1",
                                "CTCGTACCAGTATGCT-1",
                                "CTCGTACCATTCGACA-1",
                                "CTCGTACGTCAGATAA-1",
                                "CTCGTACTCGGTGTCG-1",
                                "CTCGTCAAGACGCACA-1",
                                "CTCGTCAAGCGCCTCA-1",
                                "CTCGTCACAAAGGTGC-1",
                                "CTCGTCACAAGTTCTG-1",
                                "CTCGTCACACGACTCG-1",
                                "CTCGTCAGTCTCTCGT-1",
                                "CTCGTCAGTGTGAATA-1",
                                "CTCGTCATCCATGAAC-1",
                                "CTCTAATTCACATGCA-1",
                                "CTCTACGAGGACCACA-1",
                                "CTCTACGAGTGTACGG-1",
                                "CTCTACGCAAAGCGGT-1",
                                "CTCTACGCAATAACGA-1",
                                "CTCTACGTCATTATCC-1",
                                "CTCTGGTAGCCACGCT-1",
                                "CTCTGGTAGGCCATAG-1",
                                "CTCTGGTCATAAGACA-1",
                                "CTCTGGTGTAAGGATT-1",
                                "CTGAAACAGCTAGTTC-1",
                                "CTGAAACGTAGGCATG-1",
                                "CTGAAACTCGTTGACA-1",
                                "CTGATAGAGTTCGCAT-1",
                                "CTGATAGTCCATGCTC-1",
                                "CTGATCCAGCGCTTAT-1",
                                "CTGATCCAGGAGCGAG-1",
                                "CTGATCCCACAGTCGC-1",
                                "CTGCCTACAAGCGTAG-1",
                                "CTGCCTAGTAATCGTC-1",
                                "CTGCCTAGTGAACCTT-1",
                                "CTGCCTAGTTATGCGT-1",
                                "CTGCCTATCTGGCGTG-1",
                                "CTGCGGACAGTGAGTG-1",
                                "CTGCGGACATGGTCAT-1",
                                "CTGCGGAGTGGTACAG-1",
                                "CTGCGGATCGCGATCG-1",
                                "CTGCTGTAGAGCTTCT-1",
                                "CTGCTGTGTAGCGCAA-1",
                                "CTGCTGTTCCAAATGC-1",
                                "CTGCTGTTCGATAGAA-1",
                                "CTGGTCTCAATAGCGG-1",
                                "CTGGTCTGTACCAGTT-1",
                                "CTGGTCTTCAAACGGG-1",
                                "CTGGTCTTCAACGGGA-1",
                                "CTGTGCTAGAAGATTC-1",
                                "CTGTGCTCAATGGAGC-1",
                                "CTGTGCTCAGAAGCAC-1",
                                "CTGTGCTGTAGATTAG-1",
                                "CTGTGCTTCTCCGGTT-1",
                                "CTGTGCTTCTCGATGA-1",
                                "CTGTGCTTCTTTAGGG-1",
                                "CTGTTTAAGGGCACTA-1",
                                "CTGTTTAAGTACGTTC-1",
                                "CTGTTTACAAAGTGCG-1",
                                "CTGTTTACAGCTGCAC-1",
                                "CTGTTTATCGTATCAG-1",
                                "CTTAACTAGGTCGGAT-1",
                                "CTTAACTGTAGCAAAT-1",
                                "CTTAACTTCTATGTGG-1",
                                "CTTACCGCACATCCGG-1",
                                "CTTACCGGTTCCACAA-1",
                                "CTTAGGAAGAAGGACA-1",
                                "CTTAGGAAGTACGTTC-1",
                                "CTTAGGACAATTCCTT-1",
                                "CTTAGGAGTAAGCACG-1",
                                "CTTAGGAGTAGAGGAA-1",
                                "CTTAGGAGTCGGCACT-1",
                                "CTTCTCTAGAAGATTC-1",
                                "CTTCTCTAGAGCTATA-1",
                                "CTTCTCTGTGTGAAAT-1",
                                "CTTCTCTTCGACGGAA-1",
                                "CTTGGCTAGATCTGAA-1",
                                "CTTGGCTAGTCCATAC-1",
                                "CTTGGCTCAGCGTTCG-1",
                                "CTTGGCTCAGTAAGAT-1",
                                "CTTGGCTGTCAGTGGA-1",
                                "CTTGGCTTCCGAATGT-1",
                                "CTTGGCTTCCGGGTGT-1",
                                "CTTTGCGAGGAATGGA-1",
                                "CTTTGCGTCACTATTC-1",
                                "CTTTGCGTCGTGGGAA-1",
                                "GAAACTCAGATGTTAG-1",
                                "GAAACTCCAATGTAAG-1",
                                "GAAACTCTCCTACAGA-1",
                                "GAAATGACACAGACAG-1",
                                "GAAATGAGTAGTACCT-1",
                                "GAAATGATCAGCGATT-1",
                                "GAAATGATCGGTTCGG-1",
                                "GAACATCAGACAGAGA-1",
                                "GAACATCAGAGTGAGA-1",
                                "GAACATCAGGCTAGAC-1",
                                "GAACATCCAGCTTCGG-1",
                                "GAACATCGTTCTCATT-1",
                                "GAACCTAAGCTCCTTC-1",
                                "GAACCTACAGACAGGT-1",
                                "GAACCTACATACTCTT-1",
                                "GAACCTAGTCCATCCT-1",
                                "GAACCTATCTGCAGTA-1",
                                "GAACCTATCTGGTTCC-1",
                                "GAACGGAAGGTACTCT-1",
                                "GAACGGACAAGCGATG-1",
                                "GAACGGACATCTGGTA-1",
                                "GAACGGAGTAGAAGGA-1",
                                "GAACGGAGTGTGGCTC-1",
                                "GAAGCAGCAAACGCGA-1",
                                "GAAGCAGGTGGTCTCG-1",
                                "GAAGCAGGTTGTGGAG-1",
                                "GAATAAGAGCTACCGC-1",
                                "GAATAAGAGCTGCAAG-1",
                                "GAATAAGCACACTGCG-1",
                                "GAATAAGTCCTTGGTC-1",
                                "GAATGAACAAGAGGCT-1",
                                "GAATGAACAAGGTTTC-1",
                                "GAATGAATCACAACGT-1",
                                "GAATGAATCATCGGAT-1",
                                "GAATGAATCGAATCCA-1",
                                "GACACGCCAAACTGTC-1",
                                "GACACGCCACCGTTGG-1",
                                "GACACGCCAGCGAACA-1",
                                "GACACGCCAGGTCTCG-1",
                                "GACACGCCATAACCTG-1",
                                "GACACGCTCCTTCAAT-1",
                                "GACACGCTCTAACCGA-1",
                                "GACACGCTCTTGTCAT-1",
                                "GACAGAGAGTGAAGAG-1",
                                "GACAGAGAGTGTGGCA-1",
                                "GACAGAGCAGCGTTCG-1",
                                "GACCAATAGACATAAC-1",
                                "GACCAATAGCCAGTAG-1",
                                "GACCAATAGTGATCGG-1",
                                "GACCAATAGTGGGTTG-1",
                                "GACCAATGTAAGTGGC-1",
                                "GACCTGGCAGCTGTTA-1",
                                "GACCTGGCATACGCTA-1",
                                "GACCTGGCATCACCCT-1",
                                "GACCTGGGTCGCGGTT-1",
                                "GACCTGGTCCTAGGGC-1",
                                "GACGCGTCATTTGCCC-1",
                                "GACGCGTGTCAAACTC-1",
                                "GACGCGTGTCGGGTCT-1",
                                "GACGCGTTCACATGCA-1",
                                "GACGCGTTCCCTAACC-1",
                                "GACGCGTTCCGCATCT-1",
                                "GACGCGTTCGTCCAGG-1",
                                "GACGGCTCAGCCAGAA-1",
                                "GACGGCTTCAGTTGAC-1",
                                "GACGTGCCAGGGCATA-1",
                                "GACGTGCGTACGACCC-1",
                                "GACGTGCGTGTGAAAT-1",
                                "GACGTGCGTTCGAATC-1",
                                "GACGTTAAGGTAGCCA-1",
                                "GACGTTAAGTCAATAG-1",
                                "GACGTTAGTACCGTTA-1",
                                "GACTAACAGGACAGCT-1",
                                "GACTAACCAAGCCGCT-1",
                                "GACTAACCACATTAGC-1",
                                "GACTAACCACCCATGG-1",
                                "GACTAACCACGACTCG-1",
                                "GACTAACGTAGCTCCG-1",
                                "GACTAACGTGTTCGAT-1",
                                "GACTAACTCCGTCAAA-1",
                                "GACTAACTCTTGCCGT-1",
                                "GACTACAAGACGACGT-1",
                                "GACTACAGTGGTACAG-1",
                                "GACTACATCCGTAGTA-1",
                                "GACTGCGAGGTGTTAA-1",
                                "GACTGCGGTCTTGCGG-1",
                                "GACTGCGTCTGCGTAA-1",
                                "GAGCAGAAGCGCCTTG-1",
                                "GAGCAGAAGCTCCCAG-1",
                                "GAGCAGACAGAGCCAA-1",
                                "GAGCAGACATGGTCTA-1",
                                "GAGCAGAGTCAATGTC-1",
                                "GAGCAGAGTCGAAAGC-1",
                                "GAGCAGATCAGGATCT-1",
                                "GAGCAGATCGTTTGCC-1",
                                "GAGGTGAAGACGCTTT-1",
                                "GAGGTGAGTATGAAAC-1",
                                "GAGTCCGAGTGGGATC-1",
                                "GAGTCCGCAACTTGAC-1",
                                "GAGTCCGGTCTCTTAT-1",
                                "GAGTCCGGTGCTGTAT-1",
                                "GATCAGTAGACTACAA-1",
                                "GATCAGTAGCAATATG-1",
                                "GATCAGTAGGCTATCT-1",
                                "GATCAGTCACAGATTC-1",
                                "GATCAGTCACTTGGAT-1",
                                "GATCAGTGTTGGTGGA-1",
                                "GATCAGTTCTACCTGC-1",
                                "GATCAGTTCTTCGAGA-1",
                                "GATCGATAGCTAGTGG-1",
                                "GATCGATGTGCAGTAG-1",
                                "GATCGATGTGTAAGTA-1",
                                "GATCGATTCAGGCGAA-1",
                                "GATCGCGAGACTACAA-1",
                                "GATCGCGAGGCCCTTG-1",
                                "GATCGCGGTCAGTGGA-1",
                                "GATCGCGGTCCGAGTC-1",
                                "GATCGCGTCCAGAAGG-1",
                                "GATCGTACAGATCGGA-1",
                                "GATCGTACATCCTAGA-1",
                                "GATCGTACATGTCGAT-1",
                                "GATCTAGAGAAACCGC-1",
                                "GATCTAGCAATAGAGT-1",
                                "GATCTAGGTGAGTGAC-1",
                                "GATCTAGTCACGCATA-1",
                                "GATCTAGTCGACAGCC-1",
                                "GATGAAAAGCAGACTG-1",
                                "GATGAAAAGTACGCCC-1",
                                "GATGAAACAGCATACT-1",
                                "GATGAAAGTAAGTGTA-1",
                                "GATGAAATCTCCTATA-1",
                                "GATGAGGAGGTGATTA-1",
                                "GATGAGGCAAGCCATT-1",
                                "GATGAGGCAATCCAAC-1",
                                "GATGAGGCATACCATG-1",
                                "GATGAGGGTACCGTAT-1",
                                "GATGCTAAGGCGACAT-1",
                                "GATGCTACACCATGTA-1",
                                "GATGCTAGTCATGCAT-1",
                                "GATGCTATCTGCCAGG-1",
                                "GATTCAGAGCCCTAAT-1",
                                "GATTCAGCACCGTTGG-1",
                                "GCAAACTAGGGCTCTC-1",
                                "GCAAACTTCAACACGT-1",
                                "GCAATCATCATGGTCA-1",
                                "GCAATCATCGTTTAGG-1",
                                "GCACATAGTAATCGTC-1",
                                "GCACATATCCATGCTC-1",
                                "GCACTCTAGCACGCCT-1",
                                "GCACTCTAGTCAAGCG-1",
                                "GCACTCTCACGGTGTC-1",
                                "GCACTCTGTAGCCTAT-1",
                                "GCACTCTGTGGCAAAC-1",
                                "GCACTCTTCAGGCGAA-1",
                                "GCACTCTTCCGTTGTC-1",
                                "GCAGCCAAGGCGATAC-1",
                                "GCAGCCAGTCAAACTC-1",
                                "GCAGCCATCGCCCTTA-1",
                                "GCAGTTACAGGGTTAG-1",
                                "GCAGTTACAGTCACTA-1",
                                "GCAGTTACATCCAACA-1",
                                "GCAGTTATCGCCAAAT-1",
                                "GCATACAAGGGAAACA-1",
                                "GCATACAAGTAATCCC-1",
                                "GCATACACAAGTCTAC-1",
                                "GCATACAGTCTAGAGG-1",
                                "GCATACAGTGCAACGA-1",
                                "GCATGATAGCCCAGCT-1",
                                "GCATGATCACACGCTG-1",
                                "GCATGATCATACCATG-1",
                                "GCATGATGTAAGGGCT-1",
                                "GCATGATGTAAGTGGC-1",
                                "GCATGATTCTGCTTGC-1",
                                "GCATGCGAGCTCTCGG-1",
                                "GCATGCGAGTGATCGG-1",
                                "GCATGCGCATCCTTGC-1",
                                "GCATGTAAGGTGCAAC-1",
                                "GCATGTACACATGTGT-1",
                                "GCCAAATAGCCAGAAC-1",
                                "GCCAAATAGGCCCTCA-1",
                                "GCCTCTACACCACCAG-1",
                                "GCCTCTACAGCAGTTT-1",
                                "GCCTCTACATCTCGCT-1",
                                "GCGACCAGTCCATCCT-1",
                                "GCGACCAGTTGGACCC-1",
                                "GCGAGAACAATAGCGG-1",
                                "GCGAGAACAGCAGTTT-1",
                                "GCGAGAATCAGTGCAT-1",
                                "GCGAGAATCCTGTAGA-1",
                                "GCGCAACAGCCAGAAC-1",
                                "GCGCCAACACGAGAGT-1",
                                "GCGCCAAGTCCATGAT-1",
                                "GCGCCAAGTCGCTTTC-1",
                                "GCGCCAAGTTCCACAA-1",
                                "GCGCGATAGCGATAGC-1",
                                "GCGCGATCACCGTTGG-1",
                                "GCGCGATCATGCCACG-1",
                                "GCGCGATGTTGACGTT-1",
                                "GCGGGTTAGGACTGGT-1",
                                "GCGGGTTCATGTCTCC-1",
                                "GCGGGTTGTATCTGCA-1",
                                "GCGGGTTGTCAGAATA-1",
                                "GCGGGTTGTTTCCACC-1",
                                "GCGGGTTTCCGCGGTA-1",
                                "GCGGGTTTCTTAGAGC-1",
                                "GCTCCTACAGATGGGT-1",
                                "GCTCCTAGTCAACATC-1",
                                "GCTCCTAGTTCCCGAG-1",
                                "GCTCCTAGTTCTGAAC-1",
                                "GCTCCTATCTAACCGA-1",
                                "GCTCTGTCAAGACACG-1",
                                "GCTCTGTCACGAAGCA-1",
                                "GCTCTGTCATTCACTT-1",
                                "GCTCTGTGTAACGCGA-1",
                                "GCTCTGTGTACGCACC-1",
                                "GCTCTGTTCGCCCTTA-1",
                                "GCTCTGTTCTACGAGT-1",
                                "GCTGCAGCATATGGTC-1",
                                "GCTGCAGGTATAATGG-1",
                                "GCTGCGACAAGACACG-1",
                                "GCTGCGACAGTCAGCC-1",
                                "GCTGCGACATAGTAAG-1",
                                "GCTGCGACATCTCCCA-1",
                                "GCTGCGAGTACGACCC-1",
                                "GCTGCGAGTGTTGAGG-1",
                                "GCTGCTTCACATGACT-1",
                                "GCTGCTTCAGGACCCT-1",
                                "GCTGCTTGTCTTCAAG-1",
                                "GCTGCTTTCCATGAAC-1",
                                "GCTGCTTTCGTTGACA-1",
                                "GCTGCTTTCTAACGGT-1",
                                "GCTGGGTAGATCCGAG-1",
                                "GCTGGGTAGCGATTCT-1",
                                "GCTGGGTAGGCCCTTG-1",
                                "GCTGGGTCAACTTGAC-1",
                                "GCTGGGTCATTAACCG-1",
                                "GCTGGGTTCTCGCATC-1",
                                "GCTTGAACAGGCAGTA-1",
                                "GCTTGAACATCCTTGC-1",
                                "GCTTGAATCGGAAATA-1",
                                "GCTTGAATCTGTCTCG-1",
                                "GGAAAGCAGATGTAAC-1",
                                "GGAAAGCAGGAACTGC-1",
                                "GGAAAGCAGGCTCTTA-1",
                                "GGAAAGCCAACACCTA-1",
                                "GGAAAGCCAACTGCGC-1",
                                "GGAAAGCCACTCGACG-1",
                                "GGAAAGCGTCTCCCTA-1",
                                "GGAACTTAGAAACCGC-1",
                                "GGAACTTAGTCAAGCG-1",
                                "GGAACTTCAACGATGG-1",
                                "GGAACTTCACGTGAGA-1",
                                "GGAACTTGTACTTAGC-1",
                                "GGAACTTGTTAGAACA-1",
                                "GGAACTTTCTACTCAT-1",
                                "GGAACTTTCTCGTATT-1",
                                "GGAATAAAGCAATATG-1",
                                "GGAATAAAGTAGTGCG-1",
                                "GGAATAACATGTTCCC-1",
                                "GGAATAAGTTGTGGAG-1",
                                "GGAATAATCCGTAGGC-1",
                                "GGACAAGCATGTTGAC-1",
                                "GGACAAGCATTACCTT-1",
                                "GGACAAGTCACTGGGC-1",
                                "GGACAGAAGAAGGACA-1",
                                "GGACAGAAGATCGGGT-1",
                                "GGACAGACATACAGCT-1",
                                "GGACAGATCACTTATC-1",
                                "GGACAGATCCTGTACC-1",
                                "GGACATTAGAGACGAA-1",
                                "GGACATTAGGTGCAAC-1",
                                "GGACATTAGTGCGTGA-1",
                                "GGACATTTCAAACCGT-1",
                                "GGACATTTCTACTATC-1",
                                "GGACGTCAGAAACGAG-1",
                                "GGACGTCAGAATTCCC-1",
                                "GGACGTCAGGTTACCT-1",
                                "GGAGCAAAGATGTTAG-1",
                                "GGAGCAAAGCGTAGTG-1",
                                "GGAGCAAAGGCTAGAC-1",
                                "GGAGCAATCCAGTAGT-1",
                                "GGATGTTCAGTATAAG-1",
                                "GGATTACGTGATAAGT-1",
                                "GGATTACTCCCTAACC-1",
                                "GGCAATTAGATAGCAT-1",
                                "GGCAATTAGGCCGAAT-1",
                                "GGCAATTGTTACTGAC-1",
                                "GGCAATTTCAAGATCC-1",
                                "GGCAATTTCAAGCCTA-1",
                                "GGCAATTTCTTGAGAC-1",
                                "GGCCGATAGACACGAC-1",
                                "GGCCGATAGCTAACAA-1",
                                "GGCCGATGTATGAATG-1",
                                "GGCCGATTCGGAGCAA-1",
                                "GGCCGATTCGTGACAT-1",
                                "GGCGACTAGACAATAC-1",
                                "GGCGACTAGAGCAATT-1",
                                "GGCGACTAGGCCCTCA-1",
                                "GGCGACTAGGGCTTGA-1",
                                "GGCGACTCATTCACTT-1",
                                "GGCGACTCATTGGCGC-1",
                                "GGCGACTGTGGACGAT-1",
                                "GGCGACTTCAAACCGT-1",
                                "GGCGTGTCACACCGCA-1",
                                "GGCGTGTCAGCCTTTC-1",
                                "GGCGTGTGTGGAAAGA-1",
                                "GGCGTGTTCAGTTTGG-1",
                                "GGCGTGTTCATAGCAC-1",
                                "GGCGTGTTCATTGCGA-1",
                                "GGCTCGAAGGGTGTTG-1",
                                "GGCTCGACACAGACTT-1",
                                "GGCTCGACATGGAATA-1",
                                "GGCTGGTAGACGCAAC-1",
                                "GGCTGGTAGACTGGGT-1",
                                "GGCTGGTCAGACACTT-1",
                                "GGCTGGTGTGAAGGCT-1",
                                "GGGAATGAGCTTTGGT-1",
                                "GGGAATGAGTGGTAAT-1",
                                "GGGAATGGTCCCTTGT-1",
                                "GGGAATGTCAGTGCAT-1",
                                "GGGAATGTCTGAAAGA-1",
                                "GGGAATGTCTTAGCCC-1",
                                "GGGACCTCAACGATCT-1",
                                "GGGACCTGTCACACGC-1",
                                "GGGACCTGTCTCTCTG-1",
                                "GGGACCTTCGGTGTTA-1",
                                "GGGACCTTCTGCAGTA-1",
                                "GGGAGATCAATGGAGC-1",
                                "GGGAGATTCTGATACG-1",
                                "GGGATGAAGAAGGACA-1",
                                "GGGATGAAGAGAGCTC-1",
                                "GGGATGAAGATTACCC-1",
                                "GGGATGAAGGGAGTAA-1",
                                "GGGATGAAGTTACGGG-1",
                                "GGGATGAAGTTCGCAT-1",
                                "GGGATGACAAGGACAC-1",
                                "GGGATGACACAGGCCT-1",
                                "GGGCACTCAACACCTA-1",
                                "GGGCACTCAGGGAGAG-1",
                                "GGGCACTCATACGCTA-1",
                                "GGGCACTGTGGTAACG-1",
                                "GGGCACTGTTCGCTAA-1",
                                "GGGCACTTCATCATTC-1",
                                "GGGCATCGTCGAACAG-1",
                                "GGGTCTGAGGTGATTA-1",
                                "GGGTCTGCAGCTCGCA-1",
                                "GGGTCTGGTCAAAGAT-1",
                                "GGGTCTGTCAGCTTAG-1",
                                "GGGTCTGTCTGTGCAA-1",
                                "GGGTTGCCACGGCGTT-1",
                                "GGGTTGCCATGCCCGA-1",
                                "GGGTTGCGTAGCTCCG-1",
                                "GGGTTGCGTCTTGTCC-1",
                                "GGTATTGCACATCCGG-1",
                                "GGTATTGCACTAAGTC-1",
                                "GGTATTGCAGCGTAAG-1",
                                "GGTATTGGTCTCAACA-1",
                                "GGTATTGGTGGTACAG-1",
                                "GGTATTGTCGGAAACG-1",
                                "GGTATTGTCTTTAGGG-1",
                                "GGTGAAGCAACTGCGC-1",
                                "GGTGTTAAGAGTAAGG-1",
                                "GGTGTTAGTGATAAGT-1",
                                "GGTGTTATCAACGGCC-1",
                                "GTAACGTAGACACGAC-1",
                                "GTAACGTAGCCACCTG-1",
                                "GTAACGTAGTGCCAGA-1",
                                "GTAACTGAGATAGTCA-1",
                                "GTAACTGCAAATCCGT-1",
                                "GTAACTGTCATGCTCC-1",
                                "GTAACTGTCTTTAGGG-1",
                                "GTACGTAAGTAGGCCA-1",
                                "GTACGTAGTCATACTG-1",
                                "GTACGTAGTGTTGAGG-1",
                                "GTACGTATCAAGGCTT-1",
                                "GTACGTATCTGCAGTA-1",
                                "GTACTCCAGCGTGTCC-1",
                                "GTACTCCGTAGCTAAA-1",
                                "GTACTCCTCCCATTTA-1",
                                "GTACTTTAGTGAACGC-1",
                                "GTACTTTCACGGCCAT-1",
                                "GTACTTTCATACCATG-1",
                                "GTAGGCCTCTTCCTTC-1",
                                "GTAGTCAAGAGCTGGT-1",
                                "GTAGTCAAGCTACCTA-1",
                                "GTAGTCAAGGTGTGGT-1",
                                "GTAGTCACAAACGCGA-1",
                                "GTAGTCACACACCGAC-1",
                                "GTAGTCAGTTAAGACA-1",
                                "GTATCTTAGAATTGTG-1",
                                "GTATCTTCATGCCCGA-1",
                                "GTATCTTTCGTACGGC-1",
                                "GTATTCTAGACGCAAC-1",
                                "GTATTCTAGATGTCGG-1",
                                "GTATTCTAGCTACCGC-1",
                                "GTATTCTCAAGCCTAT-1",
                                "GTATTCTGTCTAAAGA-1",
                                "GTATTCTGTGCTGTAT-1",
                                "GTATTCTGTTAAGTAG-1",
                                "GTATTCTGTTACGCGC-1",
                                "GTATTCTTCTGGGCCA-1",
                                "GTCAAGTAGCAGGCTA-1",
                                "GTCAAGTCACGTGAGA-1",
                                "GTCAAGTGTCTAACGT-1",
                                "GTCAAGTGTTGTCGCG-1",
                                "GTCAAGTTCCTTTCTC-1",
                                "GTCAAGTTCGGACAAG-1",
                                "GTCAAGTTCTCGCTTG-1",
                                "GTCAAGTTCTTCCTTC-1",
                                "GTCACAAAGAGCTGCA-1",
                                "GTCACAAAGGTAAACT-1",
                                "GTCACAACACCGAATT-1",
                                "GTCACAATCGGACAAG-1",
                                "GTCACAATCTCGATGA-1",
                                "GTCACGGAGACGCAAC-1",
                                "GTCACGGCACAGAGGT-1",
                                "GTCACGGGTGTAACGG-1",
                                "GTCACGGGTTGGTTTG-1",
                                "GTCACGGTCCTTTACA-1",
                                "GTCATTTAGTGTCTCA-1",
                                "GTCATTTGTCCGAAGA-1",
                                "GTCATTTGTGGCTCCA-1",
                                "GTCCTCAAGGTAGCTG-1",
                                "GTCCTCAAGGTGCTTT-1",
                                "GTCCTCAAGTATCGAA-1",
                                "GTCCTCACACGAAGCA-1",
                                "GTCCTCAGTCCCTACT-1",
                                "GTCGGGTGTTGCTCCT-1",
                                "GTCGGGTTCCGAATGT-1",
                                "GTCGGGTTCGTAGATC-1",
                                "GTCGGGTTCTTGTATC-1",
                                "GTCGTAAAGGCTAGCA-1",
                                "GTCGTAAAGTTCGCGC-1",
                                "GTCGTAACATGTAGTC-1",
                                "GTCGTAACATGTCTCC-1",
                                "GTCGTAATCCAATGGT-1",
                                "GTCGTAATCTCTTATG-1",
                                "GTCTCGTAGGCAAAGA-1",
                                "GTCTTCGAGAAGAAGC-1",
                                "GTCTTCGAGACTTTCG-1",
                                "GTCTTCGAGAGGTAGA-1",
                                "GTCTTCGGTCATATGC-1",
                                "GTCTTCGTCAACGCTA-1",
                                "GTCTTCGTCTTTCCTC-1",
                                "GTGAAGGAGGCCCTCA-1",
                                "GTGAAGGAGGGATGGG-1",
                                "GTGAAGGAGTAGCGGT-1",
                                "GTGAAGGCAAGAGTCG-1",
                                "GTGAAGGGTCTGATCA-1",
                                "GTGCAGCCACCTGGTG-1",
                                "GTGCAGCTCAACGGGA-1",
                                "GTGCAGCTCTGCAGTA-1",
                                "GTGCATAAGATTACCC-1",
                                "GTGCATAAGCATGGCA-1",
                                "GTGCATATCCAGAGGA-1",
                                "GTGCATATCCTTGGTC-1",
                                "GTGCATATCTGCAGTA-1",
                                "GTGCGGTCAAAGCGGT-1",
                                "GTGCGGTCATCTCGCT-1",
                                "GTGCGGTCATGCATGT-1",
                                "GTGCGGTGTTTGACTG-1",
                                "GTGCGGTTCGCGTTTC-1",
                                "GTGCTTCAGCCACGTC-1",
                                "GTGCTTCCAACGATGG-1",
                                "GTGCTTCCAAGCTGAG-1",
                                "GTGCTTCCATCCGGGT-1",
                                "GTGCTTCGTAAAGTCA-1",
                                "GTGCTTCGTATAAACG-1",
                                "GTGCTTCTCTCTTGAT-1",
                                "GTGCTTCTCTTGAGAC-1",
                                "GTGGGTCAGATATGGT-1",
                                "GTGGGTCAGGACGAAA-1",
                                "GTGGGTCCAAGTTAAG-1",
                                "GTGGGTCTCATCTGTT-1",
                                "GTGGGTCTCGCCATAA-1",
                                "GTGTGCGAGTGATCGG-1",
                                "GTGTGCGAGTGCCAGA-1",
                                "GTGTGCGAGTTGCAGG-1",
                                "GTGTGCGTCGCTTGTC-1",
                                "GTGTTAGAGCCAACAG-1",
                                "GTGTTAGAGGCTAGCA-1",
                                "GTGTTAGAGGGATACC-1",
                                "GTGTTAGTCCACTGGG-1",
                                "GTTAAGCCAGTCTTCC-1",
                                "GTTAAGCGTTAGTGGG-1",
                                "GTTAAGCTCTATCCTA-1",
                                "GTTACAGAGAGACTTA-1",
                                "GTTACAGCATAGAAAC-1",
                                "GTTACAGGTGGTCTCG-1",
                                "GTTACAGTCAGCGACC-1",
                                "GTTACAGTCAGGTAAA-1",
                                "GTTACAGTCTTTACAC-1",
                                "GTTCATTCAAAGCGGT-1",
                                "GTTCATTTCCGCATCT-1",
                                "GTTCATTTCTCTGCTG-1",
                                "GTTCGGGAGCTGCCCA-1",
                                "GTTCGGGGTTTGGCGC-1",
                                "GTTCGGGTCCGAACGC-1",
                                "GTTCTCGAGGCTCAGA-1",
                                "GTTCTCGCATCGATTG-1",
                                "GTTCTCGTCCTACAGA-1",
                                "GTTTCTAAGTCCATAC-1",
                                "GTTTCTACATAACCTG-1",
                                "GTTTCTACATCTCGCT-1",
                                "GTTTCTACATTACCTT-1",
                                "GTTTCTAGTAATTGGA-1",
                                "GTTTCTATCAGGATCT-1",
                                "TAAACCGTCCAACCAA-1",
                                "TAAACCGTCGAGGTAG-1",
                                "TAAGAGAAGATCCTGT-1",
                                "TAAGAGAAGCGTGTCC-1",
                                "TAAGAGAAGTAGGCCA-1",
                                "TAAGAGACAAACCCAT-1",
                                "TAAGAGACAAGCCGCT-1",
                                "TAAGAGATCACAGTAC-1",
                                "TAAGCGTGTAGAGGAA-1",
                                "TAAGCGTGTGGTAACG-1",
                                "TAAGCGTTCGAGAGCA-1",
                                "TAAGCGTTCGGCGCAT-1",
                                "TAAGCGTTCTGATACG-1",
                                "TAAGTGCAGACAGGCT-1",
                                "TAAGTGCCAATGTTGC-1",
                                "TAAGTGCGTACCGCTG-1",
                                "TAAGTGCGTGACAAAT-1",
                                "TACACGAAGACTAAGT-1",
                                "TACACGAAGAGCTGCA-1",
                                "TACACGAAGATCTGAA-1",
                                "TACACGACACGGCGTT-1",
                                "TACACGACAGACGCAA-1",
                                "TACACGATCATTATCC-1",
                                "TACACGATCGGCGGTT-1",
                                "TACAGTGAGAGGGATA-1",
                                "TACAGTGCAAGTAGTA-1",
                                "TACAGTGTCGCCAAAT-1",
                                "TACCTATAGGCCCTCA-1",
                                "TACCTATCATGGTCTA-1",
                                "TACCTATGTACAAGTA-1",
                                "TACCTATGTAGAGGAA-1",
                                "TACCTATGTGTGGCTC-1",
                                "TACCTATTCTGGCGTG-1",
                                "TACCTTAAGATGTGTA-1",
                                "TACCTTAAGCTTATCG-1",
                                "TACCTTACATTCACTT-1",
                                "TACCTTATCGGCTACG-1",
                                "TACGGATAGGATCGCA-1",
                                "TACGGATGTAGAAGGA-1",
                                "TACGGATGTCTCCATC-1",
                                "TACGGATTCATCGATG-1",
                                "TACGGGCAGAGCTATA-1",
                                "TACGGGCAGTGAAGAG-1",
                                "TACGGGCCAAGTTGTC-1",
                                "TACGGGCCAGTGACAG-1",
                                "TACGGTATCATGTAGC-1",
                                "TACTCATAGAAGGACA-1",
                                "TACTCATAGGCATTGG-1",
                                "TACTCATAGGGCATGT-1",
                                "TACTCATCAATGTTGC-1",
                                "TACTCGCAGCCGCCTA-1",
                                "TACTCGCAGGAGTACC-1",
                                "TACTCGCCATGCTAGT-1",
                                "TACTCGCGTTTAAGCC-1",
                                "TACTCGCTCAAGCCTA-1",
                                "TACTCGCTCCGCAGTG-1",
                                "TACTTACAGCGAAGGG-1",
                                "TACTTACCATGGATGG-1",
                                "TACTTACTCCATGAAC-1",
                                "TACTTACTCCCAAGAT-1",
                                "TACTTACTCCTCGCAT-1",
                                "TACTTGTCAAATTGCC-1",
                                "TACTTGTCAGATAATG-1",
                                "TACTTGTCATGTCTCC-1",
                                "TACTTGTGTCGAACAG-1",
                                "TACTTGTTCCGCGGTA-1",
                                "TAGACCAAGTGCGTGA-1",
                                "TAGACCAAGTGCTGCC-1",
                                "TAGACCACAGGTCCAC-1",
                                "TAGACCATCCGCAGTG-1",
                                "TAGACCATCCGTCATC-1",
                                "TAGAGCTAGTTACCCA-1",
                                "TAGAGCTGTCATACTG-1",
                                "TAGAGCTTCTTTAGGG-1",
                                "TAGCCGGAGGATGGAA-1",
                                "TAGCCGGAGGTGCAAC-1",
                                "TAGCCGGAGTTAGGTA-1",
                                "TAGCCGGTCTTGACGA-1",
                                "TAGGCATAGCCCAACC-1",
                                "TAGGCATGTAAGTTCC-1",
                                "TAGTGGTAGCGCTTAT-1",
                                "TAGTGGTGTACTCAAC-1",
                                "TAGTGGTGTCGGATCC-1",
                                "TAGTGGTGTCTAGTCA-1",
                                "TAGTGGTTCAACGGCC-1",
                                "TAGTGGTTCATCGATG-1",
                                "TAGTTGGAGGTTCCTA-1",
                                "TAGTTGGGTAAATGTG-1",
                                "TATCAGGAGTACCGGA-1",
                                "TATCTCAAGGCAGTCA-1",
                                "TATCTCACACCTATCC-1",
                                "TATCTCAGTCAACATC-1",
                                "TATCTCATCAACGGGA-1",
                                "TATCTCATCTATGTGG-1",
                                "TATGCCCAGATAGCAT-1",
                                "TATGCCCAGGACATTA-1",
                                "TATGCCCCAAGGACAC-1",
                                "TATGCCCCAATAAGCA-1",
                                "TATGCCCCACTGCCAG-1",
                                "TATTACCGTCAACATC-1",
                                "TATTACCTCATGTCCC-1",
                                "TCAACGACACATCTTT-1",
                                "TCAACGACAGAAGCAC-1",
                                "TCAATCTAGAAGGACA-1",
                                "TCAATCTCAAGCCATT-1",
                                "TCAATCTCAGCTGTTA-1",
                                "TCAATCTTCATAAAGG-1",
                                "TCAATCTTCTAACGGT-1",
                                "TCACAAGAGACGCTTT-1",
                                "TCACAAGTCAACGAAA-1",
                                "TCACAAGTCGGCTACG-1",
                                "TCACAAGTCTGTTTGT-1",
                                "TCACGAAAGAGTTGGC-1",
                                "TCACGAAAGCGTGAAC-1",
                                "TCACGAACAAGGTGTG-1",
                                "TCACGAACACCTATCC-1",
                                "TCACGAAGTCGGCATC-1",
                                "TCAGATGCACCCATTC-1",
                                "TCAGATGCACGTGAGA-1",
                                "TCAGATGCAGCTCCGA-1",
                                "TCAGATGTCTGAAAGA-1",
                                "TCAGCAAAGACAAAGG-1",
                                "TCAGCAAGTCCCGACA-1",
                                "TCAGCAATCAGGCGAA-1",
                                "TCAGCAATCTTTACAC-1",
                                "TCAGCTCAGGATATAC-1",
                                "TCAGCTCTCATGTCTT-1",
                                "TCAGCTCTCCAGTAGT-1",
                                "TCAGCTCTCCGTCATC-1",
                                "TCAGCTCTCCTAAGTG-1",
                                "TCAGGATAGTACGACG-1",
                                "TCAGGTAAGCAGATCG-1",
                                "TCAGGTACAGCCAGAA-1",
                                "TCAGGTACAGCTTCGG-1",
                                "TCAGGTACAGTAACGG-1",
                                "TCAGGTAGTACGCTGC-1",
                                "TCAGGTAGTGCTCTTC-1",
                                "TCAGGTAGTTAAGAAC-1",
                                "TCAGGTATCCGCAGTG-1",
                                "TCAGGTATCGCTGATA-1",
                                "TCATTACTCCCTGACT-1",
                                "TCATTACTCGGCATCG-1",
                                "TCATTACTCTACGAGT-1",
                                "TCATTTGAGAGAACAG-1",
                                "TCATTTGAGTTCGCGC-1",
                                "TCATTTGCACCAGGTC-1",
                                "TCATTTGGTATTAGCC-1",
                                "TCATTTGGTCAGAATA-1",
                                "TCATTTGGTCATTAGC-1",
                                "TCATTTGTCGCACTCT-1",
                                "TCCACACAGCACCGCT-1",
                                "TCCACACCAATAGCAA-1",
                                "TCCACACCAGCTGTAT-1",
                                "TCCCGATAGTCAATAG-1",
                                "TCCCGATCAGATGGGT-1",
                                "TCCCGATCATCACGAT-1",
                                "TCCCGATCATTGAGCT-1",
                                "TCCCGATGTAGATTAG-1",
                                "TCCCGATGTGGAAAGA-1",
                                "TCCCGATTCGCCAAAT-1",
                                "TCCCGATTCTGTTTGT-1",
                                "TCGAGGCAGACATAAC-1",
                                "TCGAGGCCAAACTGTC-1",
                                "TCGAGGCCACTGTGTA-1",
                                "TCGAGGCGTAAGAGAG-1",
                                "TCGAGGCGTAAGTGGC-1",
                                "TCGAGGCGTTCGCTAA-1",
                                "TCGCGAGAGGAGCGTT-1",
                                "TCGCGAGCACCTCGTT-1",
                                "TCGCGAGGTTACGTCA-1",
                                "TCGCGAGTCACCACCT-1",
                                "TCGCGAGTCGAGAGCA-1",
                                "TCGCGAGTCTCGATGA-1",
                                "TCGCGTTAGATGCGAC-1",
                                "TCGCGTTCAGCGAACA-1",
                                "TCGCGTTGTACATCCA-1",
                                "TCGCGTTGTTGTACAC-1",
                                "TCGCGTTTCTTCCTTC-1",
                                "TCGGGACAGATCCCGC-1",
                                "TCGGGACAGTTACCCA-1",
                                "TCGGGACCAATCTACG-1",
                                "TCGGGACGTCCGAGTC-1",
                                "TCGGGACTCACGATGT-1",
                                "TCGGTAAAGAGCTGGT-1",
                                "TCGGTAAAGCAGGTCA-1",
                                "TCGGTAAAGGCATGTG-1",
                                "TCGGTAAAGGGAAACA-1",
                                "TCGGTAACACTGTTAG-1",
                                "TCGGTAACAGCTCGAC-1",
                                "TCGGTAATCCAAGTAC-1",
                                "TCGGTAATCTGTCTAT-1",
                                "TCGTACCAGATGCGAC-1",
                                "TCGTACCCACACATGT-1",
                                "TCGTACCCAGGCAGTA-1",
                                "TCGTACCCATGGGACA-1",
                                "TCGTACCGTCGCCATG-1",
                                "TCGTACCGTGTGACCC-1",
                                "TCGTAGACAAGAGGCT-1",
                                "TCGTAGAGTATCTGCA-1",
                                "TCGTAGAGTCATATCG-1",
                                "TCGTAGAGTGTTCGAT-1",
                                "TCGTAGATCTGGTGTA-1",
                                "TCGTAGATCTTGACGA-1",
                                "TCTATTGCACGTGAGA-1",
                                "TCTATTGCAGCCAGAA-1",
                                "TCTATTGGTTTGTGTG-1",
                                "TCTATTGTCCCATTAT-1",
                                "TCTATTGTCGGAATCT-1",
                                "TCTATTGTCGTACGGC-1",
                                "TCTCATAAGATGTGGC-1",
                                "TCTCATAAGCCCAGCT-1",
                                "TCTCATACACACTGCG-1",
                                "TCTCATACATACTACG-1",
                                "TCTCATACATCGTCGG-1",
                                "TCTCATAGTGCGCTTG-1",
                                "TCTCATATCTGTACGA-1",
                                "TCTCATATCTTAACCT-1",
                                "TCTCTAAAGTTACCCA-1",
                                "TCTCTAACAGCCTTTC-1",
                                "TCTCTAACATCGGACC-1",
                                "TCTCTAACATCGGTTA-1",
                                "TCTCTAACATGCCTTC-1",
                                "TCTGAGACAGACGCAA-1",
                                "TCTGAGACAGTCAGCC-1",
                                "TCTGAGAGTAACGACG-1",
                                "TCTGAGAGTTCGGGCT-1",
                                "TCTGAGAGTTGTCTTT-1",
                                "TCTGAGATCGTATCAG-1",
                                "TCTGGAACAGCCTGTG-1",
                                "TCTGGAATCCACTGGG-1",
                                "TCTGGAATCCTGCCAT-1",
                                "TCTTCGGCAATGAAAC-1",
                                "TCTTCGGTCTGTCTAT-1",
                                "TCTTTCCAGGCGATAC-1",
                                "TCTTTCCAGGTCATCT-1",
                                "TCTTTCCAGTGTTGAA-1",
                                "TCTTTCCCATCTCCCA-1",
                                "TCTTTCCGTTCAGGCC-1",
                                "TGAAAGAAGTTGAGAT-1",
                                "TGACAACCAGGTCTCG-1",
                                "TGACAACTCAAGCCTA-1",
                                "TGACGGCAGGAATGGA-1",
                                "TGACGGCAGGATCGCA-1",
                                "TGACGGCAGTACGTAA-1",
                                "TGACGGCCAGTCCTTC-1",
                                "TGACGGCTCACATGCA-1",
                                "TGACGGCTCCTCAATT-1",
                                "TGACTAGCAAAGCAAT-1",
                                "TGACTAGCATAGGATA-1",
                                "TGACTAGGTATCGCAT-1",
                                "TGACTAGGTTACGCGC-1",
                                "TGACTTTCAAGCTGTT-1",
                                "TGACTTTCACAACGCC-1",
                                "TGACTTTCACGGCTAC-1",
                                "TGACTTTCAGGTTTCA-1",
                                "TGACTTTGTGGACGAT-1",
                                "TGAGAGGAGGTCATCT-1",
                                "TGAGCATAGGGTATCG-1",
                                "TGAGCATCAATGTTGC-1",
                                "TGAGCATCAGACGTAG-1",
                                "TGAGCATCAGCCAGAA-1",
                                "TGAGCATTCGGACAAG-1",
                                "TGAGCCGAGGGATGGG-1",
                                "TGAGCCGCATCTATGG-1",
                                "TGAGCCGCATTCGACA-1",
                                "TGAGCCGGTTCGGGCT-1",
                                "TGAGCCGTCCCATTAT-1",
                                "TGAGGGAAGGTGCTTT-1",
                                "TGATTTCAGCTAGTTC-1",
                                "TGATTTCAGTCCTCCT-1",
                                "TGATTTCAGTGTCCAT-1",
                                "TGATTTCCAGCTTCGG-1",
                                "TGCACCTAGACGACGT-1",
                                "TGCACCTAGATACACA-1",
                                "TGCACCTAGATCGGGT-1",
                                "TGCACCTCAGCAGTTT-1",
                                "TGCACCTCATCGGTTA-1",
                                "TGCACCTGTACCGGCT-1",
                                "TGCACCTGTGGTGTAG-1",
                                "TGCCAAAAGAGTGAGA-1",
                                "TGCCAAAAGGCAAAGA-1",
                                "TGCCAAACAATGGACG-1",
                                "TGCCAAACATGCCTAA-1",
                                "TGCCAAAGTACAGTGG-1",
                                "TGCCAAAGTACGAAAT-1",
                                "TGCCAAAGTTTGACTG-1",
                                "TGCCAAATCTGCCCTA-1",
                                "TGCCCATAGAAAGTGG-1",
                                "TGCCCATAGGGTCGAT-1",
                                "TGCCCATCAAAGCAAT-1",
                                "TGCCCATTCAACGAAA-1",
                                "TGCCCTAAGACACTAA-1",
                                "TGCCCTAGTGATGTGG-1",
                                "TGCCCTAGTGCCTGTG-1",
                                "TGCCCTATCTAACGGT-1",
                                "TGCCCTATCTTATCTG-1",
                                "TGCGCAGCACATCCAA-1",
                                "TGCGGGTCATACGCCG-1",
                                "TGCGGGTGTCCGTCAG-1",
                                "TGCGGGTTCACAACGT-1",
                                "TGCGGGTTCAGCCTAA-1",
                                "TGCGGGTTCGCTAGCG-1",
                                "TGCGTGGAGAAGGGTA-1",
                                "TGCGTGGAGTGGGCTA-1",
                                "TGCGTGGTCGAATCCA-1",
                                "TGCGTGGTCGCAAGCC-1",
                                "TGCGTGGTCGGGAGTA-1",
                                "TGCTACCCAAGCCGCT-1",
                                "TGCTACCCACCAGATT-1",
                                "TGCTACCCATCGATTG-1",
                                "TGCTACCGTAGAGTGC-1",
                                "TGCTACCTCCAAACAC-1",
                                "TGCTGCTAGTTTAGGA-1",
                                "TGCTGCTCAACACGCC-1",
                                "TGCTGCTTCACGGTTA-1",
                                "TGCTGCTTCGGATGTT-1",
                                "TGGACGCAGAAGGCCT-1",
                                "TGGACGCCACGAGGTA-1",
                                "TGGACGCCAGATTGCT-1",
                                "TGGACGCCAGTTCCCT-1",
                                "TGGACGCTCGGCTACG-1",
                                "TGGACGCTCTACTATC-1",
                                "TGGCCAGAGTGTTAGA-1",
                                "TGGCCAGCATTATCTC-1",
                                "TGGCCAGGTCGAGATG-1",
                                "TGGCCAGGTGCACTTA-1",
                                "TGGCCAGTCCGCGGTA-1",
                                "TGGCCAGTCCGGGTGT-1",
                                "TGGCGCAAGCTGTCTA-1",
                                "TGGCGCATCCCAAGAT-1",
                                "TGGCGCATCGAACTGT-1",
                                "TGGCTGGAGATAGGAG-1",
                                "TGGCTGGAGCCAGAAC-1",
                                "TGGCTGGAGCCCTAAT-1",
                                "TGGCTGGGTATCAGTC-1",
                                "TGGCTGGGTGCTAGCC-1",
                                "TGGCTGGTCTGAGTGT-1",
                                "TGGGAAGAGAGACTAT-1",
                                "TGGGAAGAGGATGGTC-1",
                                "TGGGAAGGTACGACCC-1",
                                "TGGGAAGGTGTTTGTG-1",
                                "TGGGCGTAGAAACGAG-1",
                                "TGGGCGTAGCTTTGGT-1",
                                "TGGGCGTCACCAGGTC-1",
                                "TGGGCGTCATTCTTAC-1",
                                "TGGGCGTGTACTTAGC-1",
                                "TGGGCGTGTGGTCCGT-1",
                                "TGGTTAGAGACGCAAC-1",
                                "TGGTTAGAGCCACTAT-1",
                                "TGGTTAGCAGTAAGAT-1",
                                "TGGTTCCAGAGACTTA-1",
                                "TGGTTCCCACTTGGAT-1",
                                "TGGTTCCCAGTCAGCC-1",
                                "TGGTTCCCAGTTTACG-1",
                                "TGGTTCCTCACCTCGT-1",
                                "TGTATTCAGCGTGAGT-1",
                                "TGTATTCAGTGTCTCA-1",
                                "TGTATTCGTATAATGG-1",
                                "TGTATTCGTTAAGACA-1",
                                "TGTATTCTCTTACCTA-1",
                                "TGTCCCAAGAAGGGTA-1",
                                "TGTCCCAGTGTCCTCT-1",
                                "TGTCCCAGTTACGACT-1",
                                "TGTGGTAAGTACGACG-1",
                                "TGTGGTACAACTGGCC-1",
                                "TGTGTTTAGATGCCTT-1",
                                "TGTGTTTAGCGGATCA-1",
                                "TGTGTTTAGCTGCGAA-1",
                                "TGTGTTTCAAGACGTG-1",
                                "TGTTCCGAGCGTGAAC-1",
                                "TGTTCCGCACGTCTCT-1",
                                "TGTTCCGGTAAGGATT-1",
                                "TTAACTCCAAGCGCTC-1",
                                "TTAACTCCACGGTAGA-1",
                                "TTAACTCGTGTTCTTT-1",
                                "TTAACTCTCACCGTAA-1",
                                "TTAGGACTCTTCAACT-1",
                                "TTAGGCATCGGTTAAC-1",
                                "TTAGTTCAGACTAGAT-1",
                                "TTAGTTCCACTGTGTA-1",
                                "TTATGCTAGGGATACC-1",
                                "TTATGCTCAAGCTGAG-1",
                                "TTATGCTCAGGAATGC-1",
                                "TTATGCTGTGTAACGG-1",
                                "TTATGCTGTTAAAGAC-1",
                                "TTATGCTTCAACGGCC-1",
                                "TTCCCAGAGATCCCAT-1",
                                "TTCCCAGGTCTAAACC-1",
                                "TTCCCAGGTTCTGTTT-1",
                                "TTCCCAGTCATCGATG-1",
                                "TTCCCAGTCGTTGACA-1",
                                "TTCCCAGTCTACCAGA-1",
                                "TTCCCAGTCTCTGCTG-1",
                                "TTCGAAGAGCCCGAAA-1",
                                "TTCGAAGAGGGATACC-1",
                                "TTCGAAGAGTTGTAGA-1",
                                "TTCGAAGCACTTCTGC-1",
                                "TTCGAAGCATGCAATC-1",
                                "TTCGAAGCATTAGCCA-1",
                                "TTCGAAGGTGGAAAGA-1",
                                "TTCGGTCAGAGCTTCT-1",
                                "TTCGGTCCAGTAAGAT-1",
                                "TTCGGTCCAGTTAACC-1",
                                "TTCGGTCGTACGCTGC-1",
                                "TTCGGTCGTATGCTTG-1",
                                "TTCGGTCGTGAGCGAT-1",
                                "TTCGGTCGTGCGAAAC-1",
                                "TTCGGTCTCGCTAGCG-1",
                                "TTCGGTCTCTTCGGTC-1",
                                "TTCTACAAGTACGATA-1",
                                "TTCTACACAGCTGCTG-1",
                                "TTCTACAGTCCATCCT-1",
                                "TTCTACATCGTACGGC-1",
                                "TTCTCAAAGTGTACGG-1",
                                "TTCTCAAGTTACGTCA-1",
                                "TTCTCAATCTTAACCT-1",
                                "TTCTCCTAGGCCCGTT-1",
                                "TTCTCCTCAGCCAGAA-1",
                                "TTCTCCTCATCGATGT-1",
                                "TTCTCCTGTCATGCCG-1",
                                "TTCTCCTGTTCGCGAC-1",
                                "TTCTCCTTCACCTTAT-1",
                                "TTCTTAGAGAACTCGG-1",
                                "TTCTTAGCACAGGAGT-1",
                                "TTCTTAGCATGTTGAC-1",
                                "TTCTTAGGTTCCCTTG-1",
                                "TTCTTAGTCTGGCGTG-1",
                                "TTGAACGAGGCCCGTT-1",
                                "TTGAACGCATTAGGCT-1",
                                "TTGAACGGTTGATTCG-1",
                                "TTGAACGTCCGTAGGC-1",
                                "TTGAACGTCTTCGAGA-1",
                                "TTGCCGTAGTGTTTGC-1",
                                "TTGCCGTGTTGATTGC-1",
                                "TTGCCGTTCCCTGACT-1",
                                "TTGCGTCAGGTGCTAG-1",
                                "TTGCGTCAGTAGGTGC-1",
                                "TTGCGTCCAACACGCC-1",
                                "TTGCGTCCAGCTATTG-1",
                                "TTGCGTCTCGTTTAGG-1",
                                "TTGGAACCATGTTCCC-1",
                                "TTGGAACTCTCGGACG-1",
                                "TTGGCAAAGTTTCCTT-1",
                                "TTGGCAATCCGAGCCA-1",
                                "TTGGCAATCCGTCATC-1",
                                "TTGTAGGAGAGACTTA-1",
                                "TTGTAGGAGAGCTATA-1",
                                "TTGTAGGAGCTCCCAG-1",
                                "TTGTAGGAGGGTTTCT-1",
                                "TTGTAGGCAAACTGTC-1",
                                "TTTACTGCACAAGACG-1",
                                "TTTACTGGTAGTGAAT-1",
                                "TTTATGCAGCTTTGGT-1",
                                "TTTATGCAGTCTCCTC-1",
                                "TTTATGCAGTGGTAGC-1",
                                "TTTATGCCACGGACAA-1",
                                "TTTATGCCAGTACACT-1",
                                "TTTATGCGTCGCTTTC-1",
                                "TTTATGCGTTAAGAAC-1",
                                "TTTATGCGTTATGTGC-1",
                                "TTTATGCTCACGAAGG-1",
                                "TTTATGCTCAGCTCGG-1",
                                "TTTATGCTCCTTGGTC-1",
                                "TTTCCTCAGTACGCCC-1",
                                "TTTGCGCAGAGATGAG-1",
                                "TTTGCGCAGCCACCTG-1",
                                "TTTGCGCAGCTAGTGG-1",
                                "TTTGCGCCACGTCTCT-1",
                                "TTTGCGCCAGCTATTG-1",
                                "TTTGCGCGTAAGCACG-1",
                                "TTTGGTTAGCGCCTTG-1",
                                "TTTGGTTAGGGCTTGA-1",
                                "TTTGGTTAGTTGAGAT-1",
                                "TTTGGTTCAGCCTGTG-1",
                                "TTTGGTTCATTGAGCT-1",
                                "TTTGGTTGTCAAAGAT-1",
                                "TTTGGTTGTGGACGAT-1",
                                "TTTGGTTGTTCCTCCA-1",
                                "TTTGGTTTCGAACGGA-1",
                                "TTTGGTTTCGGTTCGG-1",
                                "TTTGGTTTCTGATTCT-1",
                                "TTTGTCAAGGATCGCA-1",
                                "TTTGTCAAGTACGATA-1"
                            ],
                            "sample": "dimitri-multi"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "raw_matrix_h5",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0-ucc6a7a7c4d/files/raw_feature_bc_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "sample_barcodes_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/sample_barcodes.json",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "sample_matrices",
                            "type": "SampleMatrices[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "sample": "dimitri-multi",
                                    "matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                                    "matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_feature_barcode_matrix",
                                    "all_genes_matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix.h5",
                                    "all_genes_matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix",
                                    "filtered_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_barcodes.csv"
                                }
                            ],
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MATRICES"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MATRICES"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MATRICES"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MATRICES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/multi/multi_write_per_sample_matrices"
    },
    {
        "name": "MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 16,
                    "__vmem_gb": 19
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 1,
                            "__vmem_gb": 19
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_well",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "counts_bc_order",
                            "type": "bui[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/bc_umi_info.bui"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        },
                        {
                            "id": "read_chunks",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": [
                                {
                                    "chemistry": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell 5' R2-only",
                                        "endedness": "five_prime",
                                        "name": "SC5P-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunk_id": 0,
                                    "fastq_id": "dimitri_RNA",
                                    "fastqs": {
                                        "i1": null,
                                        "i2": null,
                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                        "r1_interleaved": false,
                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                    },
                                    "gem_group": 1,
                                    "library_id": 0,
                                    "library_type": "Gene Expression",
                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                    "read_lengths": {},
                                    "subsample_rate": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "frf.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/split-ucc6a7a71c0/files/feature_reference.frf.bincode",
                            "waiting": false
                        },
                        {
                            "id": "target_panel_summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_set_name",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "matrix_computer_summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MERGE_METRICS/fork0/chnk0-ucc6a7a7c50/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "include_introns",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "no_probe_filter",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "multi_config_sha",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "441f739f093e36c43f57328492fe5aa9703c212f8c5a330ff0ef60c31a5f08c4",
                            "waiting": false
                        },
                        {
                            "id": "sample_barcodes_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/sample_barcodes.json",
                            "waiting": false
                        },
                        {
                            "id": "per_sample_metrics",
                            "type": "SampleMetrics[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "per_barcode_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS/fork0/chnk0-ucc6a7a7cde/files/per_barcode_metrics.csv",
                                    "per_lib_type_metrics": {},
                                    "sample": "dimitri-multi",
                                    "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS/fork0/chnk0-ucc6a7a7cde/files/summary.json"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "barcode_index",
                            "type": "bi.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_INDEX/fork0/chnk0-ucc6a7a77c8/files/barcode_index.bi.bincode",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "single_mol_info",
                            "type": "SampleMoleculeInfo",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "multi_mol_info",
                            "type": "SampleMoleculeInfo[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "h5_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ce2/files/molecule_info_dimitri-multi.h5",
                                    "sample": "dimitri-multi",
                                    "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ce2/files/dimitri-multi_summary.json"
                                }
                            ],
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_COLLATE_PER_SAMPLE_METRICS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian write_molecule_info"
    },
    {
        "name": "WRITE_POS_BAM",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/WRITE_POS_BAM",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/WRITE_POS_BAM",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/WRITE_POS_BAM/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/WRITE_POS_BAM/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/WRITE_POS_BAM/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "target_set_name",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_barcodes_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "no_bam",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.DISABLE_BAMS",
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "bam_header",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/join-ucc6a7a77c8/files/bam_header",
                            "waiting": false
                        },
                        {
                            "id": "alignments",
                            "type": "asf[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/pos_sorted.asf"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "read_chunks",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": [
                                {
                                    "chemistry": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell 5' R2-only",
                                        "endedness": "five_prime",
                                        "name": "SC5P-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunk_id": 0,
                                    "fastq_id": "dimitri_RNA",
                                    "fastqs": {
                                        "i1": null,
                                        "i2": null,
                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                        "r1_interleaved": false,
                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                    },
                                    "gem_group": 1,
                                    "library_id": 0,
                                    "library_type": "Gene Expression",
                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                    "read_lengths": {},
                                    "subsample_rate": null
                                }
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "pos_sorted_bam",
                            "type": "SampleBamFile",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "multi_pos_sorted_bam",
                            "type": "SampleBamFile[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.DISABLE_BAMS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian write_pos_bam"
    },
    {
        "name": "_ASSIGN_TAGS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "chemistry_description",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": "Single Cell 5' R2-only",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ccd/files/molecule_info_non_multiplexed.h5",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary_h5",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0/chnk0-ucc6a7a7c4d/files/barcode_summary.h5",
                            "waiting": false
                        },
                        {
                            "id": "multi_graph",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG/fork0/chnk0-ucc6a7a7197/files/multi_graph.json",
                            "waiting": false
                        },
                        {
                            "id": "force_sample_barcodes",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "gem_well",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "min_assignment_confidence",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "assign_tags_outs",
                            "type": "AssignTagsOuts",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "assignment_confidence_table": null,
                                "cells_per_tag": null,
                                "gem_well_inferred_throughputs": null,
                                "gem_well_throughput": null,
                                "jibes_model_summary": null,
                                "jibes_parameters": null,
                                "jibes_summary_data": null,
                                "marginal_tag_frequencies": null,
                                "non_tag_assignments": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/CALL_TAGS_JIBES/fork0/join-ucc6a7a7cdb/files/non_tag_assignments.json",
                                "sample_assignment_metrics": {
                                    "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/dimitri-multi_summary.json"
                                },
                                "sample_barcodes_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/sample_barcodes.json",
                                "tag_assigner_pickle": null,
                                "tag_call_metrics_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/MERGE_METRICS/fork0/chnk0-ucc6a7a7ce0/files/summary.json",
                                "tag_calls_per_cell": null,
                                "tag_calls_summary": null,
                                "tag_contaminant_info": null,
                                "tag_umi_thresholds_csv": null,
                                "tag_umi_thresholds_json": null
                            },
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.INFER_GEM_WELL_THROUGHPUT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.MERGE_METRICS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CALL_TAGS_JIBES",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/CALL_TAGS_JIBES",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/CALL_TAGS_JIBES",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 4,
                    "__mem_gb": 16,
                    "__vmem_gb": 19
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/CALL_TAGS_JIBES/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/CALL_TAGS_JIBES/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/CALL_TAGS_JIBES/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "marginal_tag_calls_per_cell",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ccd/files/molecule_info_non_multiplexed.h5",
                            "waiting": false
                        },
                        {
                            "id": "marginal_tag_frequencies",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "throughput",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.INFER_GEM_WELL_THROUGHPUT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "min_assignment_confidence",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "jibes_parameters",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "jibes_model_summary",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "jibes_summary_data",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "assignment_confidence_table",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tag_calls_summary",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tag_calls_per_cell",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tag_call_metrics_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cells_per_tag",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tag_umi_thresholds_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tag_umi_thresholds_csv",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tag_assigner_pickle",
                            "type": "pickle",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "non_tag_assignments",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/CALL_TAGS_JIBES/fork0/join-ucc6a7a7cdb/files/non_tag_assignments.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.INFER_GEM_WELL_THROUGHPUT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/feature/call_tags_jibes"
    },
    {
        "name": "CALL_TAGS_MARGINAL",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/CALL_TAGS_MARGINAL",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/CALL_TAGS_MARGINAL",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 16,
                    "__vmem_gb": 19
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/CALL_TAGS_MARGINAL/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/CALL_TAGS_MARGINAL/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/CALL_TAGS_MARGINAL/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "throughput",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.INFER_GEM_WELL_THROUGHPUT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "marginal_tag_calls_per_cell",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "marginal_tag_call_metrics_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "marginal_tag_frequencies",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tag_contaminant_info",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.INFER_GEM_WELL_THROUGHPUT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/feature/call_tags_marginal"
    },
    {
        "name": "COMPUTE_EXTRA_MULTIPLEXING_METRICS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.COMPUTE_EXTRA_MULTIPLEXING_METRICS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/COMPUTE_EXTRA_MULTIPLEXING_METRICS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/COMPUTE_EXTRA_MULTIPLEXING_METRICS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 2.080078125,
                    "__vmem_gb": 5.080078125
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/COMPUTE_EXTRA_MULTIPLEXING_METRICS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/COMPUTE_EXTRA_MULTIPLEXING_METRICS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/COMPUTE_EXTRA_MULTIPLEXING_METRICS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ccd/files/molecule_info_non_multiplexed.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "multi_graph",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG/fork0/chnk0-ucc6a7a7197/files/multi_graph.json",
                            "waiting": false
                        },
                        {
                            "id": "sample_barcodes",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/sample_barcodes.json",
                            "waiting": false
                        },
                        {
                            "id": "multiplet_barcodes",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/multiplet_barcodes_json.json",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.COMPUTE_EXTRA_MULTIPLEXING_METRICS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/COMPUTE_EXTRA_MULTIPLEXING_METRICS/fork0/join-ucc6a7a7cde/files/summary.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.COMPUTE_EXTRA_MULTIPLEXING_METRICS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.COMPUTE_EXTRA_MULTIPLEXING_METRICS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.COMPUTE_EXTRA_MULTIPLEXING_METRICS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.COMPUTE_EXTRA_MULTIPLEXING_METRICS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/multi/compute_extra_multiplexing_metrics"
    },
    {
        "name": "DETERMINE_SAMPLE_ASSIGNMENTS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "cells_per_tag",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_sample_barcodes",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "multi_graph",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG/fork0/chnk0-ucc6a7a7197/files/multi_graph.json",
                            "waiting": false
                        },
                        {
                            "id": "gem_well",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 1,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "sample_barcodes_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/sample_barcodes.json",
                            "waiting": false
                        },
                        {
                            "id": "multiplet_barcodes_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/multiplet_barcodes_json.json",
                            "waiting": false
                        },
                        {
                            "id": "sample_summaries",
                            "type": "map\u003cjson\u003e",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS",
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/dimitri-multi_summary.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/summary.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/multi/determine_sample_assignments"
    },
    {
        "name": "INFER_GEM_WELL_THROUGHPUT",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.INFER_GEM_WELL_THROUGHPUT",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/INFER_GEM_WELL_THROUGHPUT",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/INFER_GEM_WELL_THROUGHPUT",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 2.6005859375,
                    "__vmem_gb": 5.6005859375
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/INFER_GEM_WELL_THROUGHPUT/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/INFER_GEM_WELL_THROUGHPUT/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/INFER_GEM_WELL_THROUGHPUT/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "throughput",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_description",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": "Single Cell 5' R2-only",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary_h5",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0/chnk0-ucc6a7a7c4d/files/barcode_summary.h5",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "throughput",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.INFER_GEM_WELL_THROUGHPUT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "inferred_throughputs",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.INFER_GEM_WELL_THROUGHPUT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.INFER_GEM_WELL_THROUGHPUT"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.INFER_GEM_WELL_THROUGHPUT"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.INFER_GEM_WELL_THROUGHPUT"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.INFER_GEM_WELL_THROUGHPUT"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/feature/infer_gem_well_throughput"
    },
    {
        "name": "MERGE_METRICS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.MERGE_METRICS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/MERGE_METRICS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/MERGE_METRICS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/MERGE_METRICS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/MERGE_METRICS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/MERGE_METRICS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/MERGE_METRICS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "summaries",
                            "type": "json[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                null,
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/summary.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/COMPUTE_EXTRA_MULTIPLEXING_METRICS/fork0/join-ucc6a7a7cde/files/summary.json"
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.MERGE_METRICS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/MERGE_METRICS/fork0/chnk0-ucc6a7a7ce0/files/summary.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.MERGE_METRICS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.COMPUTE_EXTRA_MULTIPLEXING_METRICS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.MERGE_METRICS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.MERGE_METRICS"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian merge_metrics"
    },
    {
        "name": "_CELLS_REPORTER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_well",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "slfe_feature_reference",
                            "type": "frf.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/split-ucc6a7a71c0/files/feature_reference.frf.bincode",
                            "waiting": false
                        },
                        {
                            "id": "target_panel_summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_set_name",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "matrices_h5",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0-ucc6a7a7c4d/files/raw_feature_bc_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "read_chunks",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": [
                                {
                                    "chemistry": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell 5' R2-only",
                                        "endedness": "five_prime",
                                        "name": "SC5P-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunk_id": 0,
                                    "fastq_id": "dimitri_RNA",
                                    "fastqs": {
                                        "i1": null,
                                        "i2": null,
                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                        "r1_interleaved": false,
                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                    },
                                    "gem_group": 1,
                                    "library_id": 0,
                                    "library_type": "Gene Expression",
                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                    "read_lengths": {},
                                    "subsample_rate": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "report_mol_inputs",
                            "type": "bui[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/bc_umi_info.bui"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "matrix_computer_summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MERGE_METRICS/fork0/chnk0-ucc6a7a7c50/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0/chnk0-ucc6a7a7c4d/files/barcode_summary.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "filter_barcodes_summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "per_barcode_metrics",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS/fork0/chnk0-ucc6a7a7c4d/files/per_barcode_metrics.csv",
                            "waiting": false
                        },
                        {
                            "id": "include_introns",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "no_probe_filter",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "multi_config_sha",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "441f739f093e36c43f57328492fe5aa9703c212f8c5a330ff0ef60c31a5f08c4",
                            "waiting": false
                        },
                        {
                            "id": "barcode_index",
                            "type": "bi.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_INDEX/fork0/chnk0-ucc6a7a77c8/files/barcode_index.bi.bincode",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS/fork0/join-ucc6a7a7d5c/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ccd/files/molecule_info_non_multiplexed.h5",
                            "waiting": false
                        },
                        {
                            "id": "merged_subsampling_metrics",
                            "type": "pickle",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUBSAMPLE_READS/fork0/join-ucc6a7a7cd4/files/merged_metrics.pickle",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "SUBSAMPLE_READS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUBSAMPLE_READS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUBSAMPLE_READS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 6,
                    "__vmem_gb": 9
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUBSAMPLE_READS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUBSAMPLE_READS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUBSAMPLE_READS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_len": 10003934,
                            "chunk_start": 0,
                            "subsample_info": [
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 5000,
                                    "library_subsample_rates": [
                                        0.03135135435076339
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 10000,
                                    "library_subsample_rates": [
                                        0.06270270870152678
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 15948,
                                    "library_subsample_rates": [
                                        0.0999982798371949
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 20000,
                                    "library_subsample_rates": [
                                        0.12540541740305355
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 30000,
                                    "library_subsample_rates": [
                                        0.18810812610458036
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 31896,
                                    "library_subsample_rates": [
                                        0.1999965596743898
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 47844,
                                    "library_subsample_rates": [
                                        0.29999483951158473
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 50000,
                                    "library_subsample_rates": [
                                        0.31351354350763394
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 63793,
                                    "library_subsample_rates": [
                                        0.3999993896196498
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 79741,
                                    "library_subsample_rates": [
                                        0.49999766945684476
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 95689,
                                    "library_subsample_rates": [
                                        0.5999959492940397
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 111637,
                                    "library_subsample_rates": [
                                        0.6999942291312345
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 127586,
                                    "library_subsample_rates": [
                                        0.7999987792392996
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 143534,
                                    "library_subsample_rates": [
                                        0.8999970590764944
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 159482,
                                    "library_subsample_rates": [
                                        1.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 5000,
                                    "library_subsample_rates": [
                                        0.0663245113168268
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 7538,
                                    "library_subsample_rates": [
                                        0.0999908332612481
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 10000,
                                    "library_subsample_rates": [
                                        0.1326490226336536
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 15077,
                                    "library_subsample_rates": [
                                        0.19999493142475955
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 20000,
                                    "library_subsample_rates": [
                                        0.2652980452673072
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 22616,
                                    "library_subsample_rates": [
                                        0.299999029588271
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 30000,
                                    "library_subsample_rates": [
                                        0.39794706790096085
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 30154,
                                    "library_subsample_rates": [
                                        0.3999898628495191
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 37693,
                                    "library_subsample_rates": [
                                        0.49999396101303056
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 45232,
                                    "library_subsample_rates": [
                                        0.599998059176542
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 50000,
                                    "library_subsample_rates": [
                                        0.6632451131682681
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 52770,
                                    "library_subsample_rates": [
                                        0.6999888924377901
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 60309,
                                    "library_subsample_rates": [
                                        0.7999929906013016
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 67848,
                                    "library_subsample_rates": [
                                        0.899997088764813
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 75386,
                                    "library_subsample_rates": [
                                        1.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 10000,
                                    "library_subsample_rates": [
                                        3.0827290413729985e-05
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 50000,
                                    "library_subsample_rates": [
                                        0.0001541364520686499
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 100000,
                                    "library_subsample_rates": [
                                        0.0003082729041372998
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 250000,
                                    "library_subsample_rates": [
                                        0.0007706822603432495
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 500000,
                                    "library_subsample_rates": [
                                        0.001541364520686499
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 1000000,
                                    "library_subsample_rates": [
                                        0.003082729041372998
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 2500000,
                                    "library_subsample_rates": [
                                        0.007706822603432495
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 5000000,
                                    "library_subsample_rates": [
                                        0.01541364520686499
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 7500000,
                                    "library_subsample_rates": [
                                        0.023120467810297488
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 10000000,
                                    "library_subsample_rates": [
                                        0.03082729041372998
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 32438790,
                                    "library_subsample_rates": [
                                        0.1
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 50000000,
                                    "library_subsample_rates": [
                                        0.1541364520686499
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 64877580,
                                    "library_subsample_rates": [
                                        0.2
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 97316370,
                                    "library_subsample_rates": [
                                        0.3
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 100000000,
                                    "library_subsample_rates": [
                                        0.3082729041372998
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 129755160,
                                    "library_subsample_rates": [
                                        0.4
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 162193950,
                                    "library_subsample_rates": [
                                        0.5
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 194632740,
                                    "library_subsample_rates": [
                                        0.6
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 227071530,
                                    "library_subsample_rates": [
                                        0.7
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 259510320,
                                    "library_subsample_rates": [
                                        0.8
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 291949110,
                                    "library_subsample_rates": [
                                        0.9
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 324387900,
                                    "library_subsample_rates": [
                                        1.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 1000000000,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUBSAMPLE_READS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_len": 680679,
                            "chunk_start": 10003934,
                            "subsample_info": [
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 5000,
                                    "library_subsample_rates": [
                                        0.03135135435076339
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 10000,
                                    "library_subsample_rates": [
                                        0.06270270870152678
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 15948,
                                    "library_subsample_rates": [
                                        0.0999982798371949
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 20000,
                                    "library_subsample_rates": [
                                        0.12540541740305355
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 30000,
                                    "library_subsample_rates": [
                                        0.18810812610458036
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 31896,
                                    "library_subsample_rates": [
                                        0.1999965596743898
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 47844,
                                    "library_subsample_rates": [
                                        0.29999483951158473
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 50000,
                                    "library_subsample_rates": [
                                        0.31351354350763394
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 63793,
                                    "library_subsample_rates": [
                                        0.3999993896196498
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 79741,
                                    "library_subsample_rates": [
                                        0.49999766945684476
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 95689,
                                    "library_subsample_rates": [
                                        0.5999959492940397
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 111637,
                                    "library_subsample_rates": [
                                        0.6999942291312345
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 127586,
                                    "library_subsample_rates": [
                                        0.7999987792392996
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 143534,
                                    "library_subsample_rates": [
                                        0.8999970590764944
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 159482,
                                    "library_subsample_rates": [
                                        1.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 5000,
                                    "library_subsample_rates": [
                                        0.0663245113168268
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 7538,
                                    "library_subsample_rates": [
                                        0.0999908332612481
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 10000,
                                    "library_subsample_rates": [
                                        0.1326490226336536
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 15077,
                                    "library_subsample_rates": [
                                        0.19999493142475955
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 20000,
                                    "library_subsample_rates": [
                                        0.2652980452673072
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 22616,
                                    "library_subsample_rates": [
                                        0.299999029588271
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 30000,
                                    "library_subsample_rates": [
                                        0.39794706790096085
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 30154,
                                    "library_subsample_rates": [
                                        0.3999898628495191
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 37693,
                                    "library_subsample_rates": [
                                        0.49999396101303056
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 45232,
                                    "library_subsample_rates": [
                                        0.599998059176542
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 50000,
                                    "library_subsample_rates": [
                                        0.6632451131682681
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 52770,
                                    "library_subsample_rates": [
                                        0.6999888924377901
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 60309,
                                    "library_subsample_rates": [
                                        0.7999929906013016
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 67848,
                                    "library_subsample_rates": [
                                        0.899997088764813
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 75386,
                                    "library_subsample_rates": [
                                        1.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 10000,
                                    "library_subsample_rates": [
                                        3.0827290413729985e-05
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 50000,
                                    "library_subsample_rates": [
                                        0.0001541364520686499
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 100000,
                                    "library_subsample_rates": [
                                        0.0003082729041372998
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 250000,
                                    "library_subsample_rates": [
                                        0.0007706822603432495
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 500000,
                                    "library_subsample_rates": [
                                        0.001541364520686499
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 1000000,
                                    "library_subsample_rates": [
                                        0.003082729041372998
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 2500000,
                                    "library_subsample_rates": [
                                        0.007706822603432495
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 5000000,
                                    "library_subsample_rates": [
                                        0.01541364520686499
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 7500000,
                                    "library_subsample_rates": [
                                        0.023120467810297488
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 10000000,
                                    "library_subsample_rates": [
                                        0.03082729041372998
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 32438790,
                                    "library_subsample_rates": [
                                        0.1
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 50000000,
                                    "library_subsample_rates": [
                                        0.1541364520686499
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 64877580,
                                    "library_subsample_rates": [
                                        0.2
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 97316370,
                                    "library_subsample_rates": [
                                        0.3
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 100000000,
                                    "library_subsample_rates": [
                                        0.3082729041372998
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 129755160,
                                    "library_subsample_rates": [
                                        0.4
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 162193950,
                                    "library_subsample_rates": [
                                        0.5
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 194632740,
                                    "library_subsample_rates": [
                                        0.6
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 227071530,
                                    "library_subsample_rates": [
                                        0.7
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 259510320,
                                    "library_subsample_rates": [
                                        0.8
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 291949110,
                                    "library_subsample_rates": [
                                        0.9
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 324387900,
                                    "library_subsample_rates": [
                                        1.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 1000000000,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUBSAMPLE_READS/fork0/chnk1",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ccd/files/molecule_info_non_multiplexed.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "target_mode",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUBSAMPLE_READS/fork0/join-ucc6a7a7cd4/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "merged_metrics",
                            "type": "pickle",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUBSAMPLE_READS/fork0/join-ucc6a7a7cd4/files/merged_metrics.pickle",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/counter/subsample_reads"
    },
    {
        "name": "SUMMARIZE_BASIC_REPORTS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 5,
                    "__vmem_gb": 8
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrices_h5",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0-ucc6a7a7c4d/files/raw_feature_bc_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "per_barcode_metrics",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS/fork0/chnk0-ucc6a7a7c4d/files/per_barcode_metrics.csv",
                            "waiting": false
                        },
                        {
                            "id": "matrix_computer_summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MERGE_METRICS/fork0/chnk0-ucc6a7a7c50/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0/chnk0-ucc6a7a7c4d/files/barcode_summary.h5",
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        },
                        {
                            "id": "cell_bcs_only",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "summary_jsons",
                            "type": "json[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MERGE_METRICS/fork0/chnk0-ucc6a7a7c50/files/summary.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUBSAMPLE_READS/fork0/join-ucc6a7a7cd4/files/summary.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ccd/files/non_multiplexed_summary.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/summary.json"
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS/fork0/join-ucc6a7a7d5c/files/summary.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/counter/summarize_basic_reports"
    },
    {
        "name": "WRITE_MOLECULE_INFO",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 16,
                    "__vmem_gb": 19
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 1,
                            "__vmem_gb": 19
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_well",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "counts_bc_order",
                            "type": "bui[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/bc_umi_info.bui"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        },
                        {
                            "id": "read_chunks",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": [
                                {
                                    "chemistry": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell 5' R2-only",
                                        "endedness": "five_prime",
                                        "name": "SC5P-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunk_id": 0,
                                    "fastq_id": "dimitri_RNA",
                                    "fastqs": {
                                        "i1": null,
                                        "i2": null,
                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                        "r1_interleaved": false,
                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                    },
                                    "gem_group": 1,
                                    "library_id": 0,
                                    "library_type": "Gene Expression",
                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                    "read_lengths": {},
                                    "subsample_rate": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "frf.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/split-ucc6a7a71c0/files/feature_reference.frf.bincode",
                            "waiting": false
                        },
                        {
                            "id": "target_panel_summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_set_name",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "matrix_computer_summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MERGE_METRICS/fork0/chnk0-ucc6a7a7c50/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "include_introns",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "no_probe_filter",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "multi_config_sha",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "441f739f093e36c43f57328492fe5aa9703c212f8c5a330ff0ef60c31a5f08c4",
                            "waiting": false
                        },
                        {
                            "id": "sample_barcodes_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "per_sample_metrics",
                            "type": "SampleMetrics[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_index",
                            "type": "bi.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_INDEX/fork0/chnk0-ucc6a7a77c8/files/barcode_index.bi.bincode",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "single_mol_info",
                            "type": "SampleMoleculeInfo",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO",
                            "matchedFork": null,
                            "value": {
                                "h5_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ccd/files/molecule_info_non_multiplexed.h5",
                                "sample": "non_multiplexed",
                                "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ccd/files/non_multiplexed_summary.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "multi_mol_info",
                            "type": "SampleMoleculeInfo[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian write_molecule_info"
    },
    {
        "name": "_MATRIX_COMPUTER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_well",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": {
                                "barcode": [
                                    {
                                        "kind": "gel_bead",
                                        "length": 16,
                                        "offset": 0,
                                        "read_type": "R1",
                                        "whitelist": "737K-august-2016"
                                    }
                                ],
                                "description": "Single Cell 5' R2-only",
                                "endedness": "five_prime",
                                "name": "SC5P-R2",
                                "rna": {
                                    "length": null,
                                    "min_length": null,
                                    "offset": 0,
                                    "read_type": "R2"
                                },
                                "rna2": null,
                                "strandedness": "-",
                                "umi": {
                                    "length": 10,
                                    "min_length": null,
                                    "offset": 16,
                                    "read_type": "R1"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "barcodes_under_tissue",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_pd",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "chunks",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": [
                                {
                                    "chemistry": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell 5' R2-only",
                                        "endedness": "five_prime",
                                        "name": "SC5P-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunk_id": 0,
                                    "fastq_id": "dimitri_RNA",
                                    "fastqs": {
                                        "i1": null,
                                        "i2": null,
                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                        "r1_interleaved": false,
                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                    },
                                    "gem_group": 1,
                                    "library_id": 0,
                                    "library_type": "Gene Expression",
                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                    "read_lengths": {},
                                    "subsample_rate": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        },
                        {
                            "id": "libraries_to_translate",
                            "type": "string[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": [],
                            "waiting": false
                        },
                        {
                            "id": "subsample_rate",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "initial_reads",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "trim_polya_min_score",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": 20,
                            "waiting": false
                        },
                        {
                            "id": "trim_tso_min_score",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": 20,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_features",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_set",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_set_name",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "include_introns",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "aligner",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "disable_target_umi_filter",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "rps_limit",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "write_bc_counts_json",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "slfe_feature_reference",
                            "type": "frf.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/split-ucc6a7a71c0/files/feature_reference.frf.bincode",
                            "waiting": false
                        },
                        {
                            "id": "barcode_correction_csv",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/join-ucc6a7a77c8/files/barcode_summary.csv",
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0/chnk0-ucc6a7a7c4d/files/barcode_summary.h5",
                            "waiting": false
                        },
                        {
                            "id": "raw_gene_bc_matrices_h5",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0-ucc6a7a7c4d/files/raw_feature_bc_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "raw_gene_bc_matrices_mex",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_MATRIX_MARKET",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_MATRIX_MARKET/fork0/chnk0-ucc6a7a7c4d/files/raw_feature_bc_matrix",
                            "waiting": false
                        },
                        {
                            "id": "read_shards",
                            "type": "ReadShards",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "corrected_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/valid_shard.shard"
                                ],
                                "invalid_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/invalid_shard.shard"
                                ],
                                "valid_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c6/files/valid.shard"
                                ]
                            },
                            "waiting": false
                        },
                        {
                            "id": "report_mol_inputs",
                            "type": "bui[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/bc_umi_info.bui"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MERGE_METRICS/fork0/chnk0-ucc6a7a7c50/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "annotation_files",
                            "type": "ann.bincode.lz4[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "per_barcode_metrics",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS/fork0/chnk0-ucc6a7a7c4d/files/per_barcode_metrics.csv",
                            "waiting": false
                        },
                        {
                            "id": "per_barcode_metrics_shard",
                            "type": "bmsf[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/metrics_shard.bmsf"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "bc_umi_info",
                            "type": "bui[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/bc_umi_info.bui"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "bam_header",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/join-ucc6a7a77c8/files/bam_header",
                            "waiting": false
                        },
                        {
                            "id": "alignments",
                            "type": "asf[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/pos_sorted.asf"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "read_chunks",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": [
                                {
                                    "chemistry": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell 5' R2-only",
                                        "endedness": "five_prime",
                                        "name": "SC5P-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunk_id": 0,
                                    "fastq_id": "dimitri_RNA",
                                    "fastqs": {
                                        "i1": null,
                                        "i2": null,
                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                        "r1_interleaved": false,
                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                    },
                                    "gem_group": 1,
                                    "library_id": 0,
                                    "library_type": "Gene Expression",
                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                    "read_lengths": {},
                                    "subsample_rate": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "multi_metrics",
                            "type": "SampleMetrics[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "gem_well_alignment_metrics",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS/fork0/chnk0-ucc6a7a7c4d/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "barcode_index",
                            "type": "bi.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_INDEX/fork0/chnk0-ucc6a7a77c8/files/barcode_index.bi.bincode",
                            "waiting": false
                        },
                        {
                            "id": "sequencing_metrics",
                            "type": "smf.json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                            "waiting": false
                        },
                        {
                            "id": "bc_counts_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/bc_counts_json.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_READ_SHARDS_STRUCT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_MATRIX_MARKET",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "ALIGN_AND_COUNT",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 2,
                    "__vmem_gb": 5
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 17,
                            "__threads": 4,
                            "__vmem_gb": 20,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AGGGTGATCCAGCAGC",
                                    "valid": false
                                },
                                "start": null
                            },
                            "read_ann_subsample_rate": 0.15413644909858704
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CCAGCGAGCTTGTCAG",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AGGGTGATCCAGCAGC",
                                    "valid": false
                                }
                            },
                            "read_ann_subsample_rate": 0.15413644909858704
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTCGTCAATTTAGTTT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CCAGCGAGCTTGTCAG",
                                    "valid": false
                                }
                            },
                            "read_ann_subsample_rate": 0.15413644909858704
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GCTCTGTCATCCACCT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTCGTCAATTTAGTTT",
                                    "valid": false
                                }
                            },
                            "read_ann_subsample_rate": 0.15413644909858704
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 17,
                            "__threads": 4,
                            "__vmem_gb": 20,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TAAGAGACGATTGCTC",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GCTCTGTCATCCACCT",
                                    "valid": false
                                }
                            },
                            "read_ann_subsample_rate": 0.15413644909858704
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 16,
                            "__threads": 4,
                            "__vmem_gb": 19,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TGGCAATCCGTCATCG",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TAAGAGACGATTGCTC",
                                    "valid": false
                                }
                            },
                            "read_ann_subsample_rate": 0.15413644909858704
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 21,
                            "__threads": 4,
                            "__vmem_gb": 24,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AAGTCTGTCCAGGGCT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TGGCAATCCGTCATCG",
                                    "valid": false
                                }
                            },
                            "read_ann_subsample_rate": 0.15413644909858704
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 21,
                            "__threads": 4,
                            "__vmem_gb": 24,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ACTTTCACATCCGCGA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AAGTCTGTCCAGGGCT",
                                    "valid": true
                                }
                            },
                            "read_ann_subsample_rate": 0.15413644909858704
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 21,
                            "__threads": 4,
                            "__vmem_gb": 24,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ATCCGAAAGAGCTGGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ACTTTCACATCCGCGA",
                                    "valid": true
                                }
                            },
                            "read_ann_subsample_rate": 0.15413644909858704
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 21,
                            "__threads": 4,
                            "__vmem_gb": 24,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CACCACTAGATCCGAG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ATCCGAAAGAGCTGGT",
                                    "valid": true
                                }
                            },
                            "read_ann_subsample_rate": 0.15413644909858704
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 21,
                            "__threads": 4,
                            "__vmem_gb": 24,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CCAGCGAAGACGCTTT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CACCACTAGATCCGAG",
                                    "valid": true
                                }
                            },
                            "read_ann_subsample_rate": 0.15413644909858704
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 21,
                            "__threads": 4,
                            "__vmem_gb": 24,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CGACTTCCAGATGGCA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CCAGCGAAGACGCTTT",
                                    "valid": true
                                }
                            },
                            "read_ann_subsample_rate": 0.15413644909858704
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 20,
                            "__threads": 4,
                            "__vmem_gb": 23,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTAATGGTCCCATTAT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CGACTTCCAGATGGCA",
                                    "valid": true
                                }
                            },
                            "read_ann_subsample_rate": 0.15413644909858704
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 21,
                            "__threads": 4,
                            "__vmem_gb": 24,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTTCTCTAGAGCTATA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTAATGGTCCCATTAT",
                                    "valid": true
                                }
                            },
                            "read_ann_subsample_rate": 0.15413644909858704
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 21,
                            "__threads": 4,
                            "__vmem_gb": 24,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GAGTCCGAGATCACGG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTTCTCTAGAGCTATA",
                                    "valid": true
                                }
                            },
                            "read_ann_subsample_rate": 0.15413644909858704
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 21,
                            "__threads": 4,
                            "__vmem_gb": 24,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GCTCTGTTCACCAGGC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GAGTCCGAGATCACGG",
                                    "valid": true
                                }
                            },
                            "read_ann_subsample_rate": 0.15413644909858704
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 21,
                            "__threads": 4,
                            "__vmem_gb": 24,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GGGCACTCAGCTGGCT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GCTCTGTTCACCAGGC",
                                    "valid": true
                                }
                            },
                            "read_ann_subsample_rate": 0.15413644909858704
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 21,
                            "__threads": 4,
                            "__vmem_gb": 24,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GTGCGGTGTGAGCGAT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GGGCACTCAGCTGGCT",
                                    "valid": true
                                }
                            },
                            "read_ann_subsample_rate": 0.15413644909858704
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 21,
                            "__threads": 4,
                            "__vmem_gb": 24,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TAGTTGGGTCCTCCAT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GTGCGGTGTGAGCGAT",
                                    "valid": true
                                }
                            },
                            "read_ann_subsample_rate": 0.15413644909858704
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 20,
                            "__threads": 4,
                            "__vmem_gb": 23,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TGAGAGGTCGTGGACC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TAGTTGGGTCCTCCAT",
                                    "valid": true
                                }
                            },
                            "read_ann_subsample_rate": 0.15413644909858704
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 21,
                            "__threads": 4,
                            "__vmem_gb": 24,
                            "range": {
                                "end": null,
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TGAGAGGTCGTGGACC",
                                    "valid": true
                                }
                            },
                            "read_ann_subsample_rate": 0.15413644909858704
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_well",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "read_chunks",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": [
                                {
                                    "chemistry": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell 5' R2-only",
                                        "endedness": "five_prime",
                                        "name": "SC5P-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunk_id": 0,
                                    "fastq_id": "dimitri_RNA",
                                    "fastqs": {
                                        "i1": null,
                                        "i2": null,
                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                        "r1_interleaved": false,
                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                    },
                                    "gem_group": 1,
                                    "library_id": 0,
                                    "library_type": "Gene Expression",
                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                    "read_lengths": {},
                                    "subsample_rate": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        },
                        {
                            "id": "read_shards",
                            "type": "ReadShards",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "corrected_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/valid_shard.shard"
                                ],
                                "invalid_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/invalid_shard.shard"
                                ],
                                "valid_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c6/files/valid.shard"
                                ]
                            },
                            "waiting": false
                        },
                        {
                            "id": "feature_counts",
                            "type": "fbc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/feature_counts.fbc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "frf.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/split-ucc6a7a71c0/files/feature_reference.frf.bincode",
                            "waiting": false
                        },
                        {
                            "id": "target_set",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": {
                                "barcode": [
                                    {
                                        "kind": "gel_bead",
                                        "length": 16,
                                        "offset": 0,
                                        "read_type": "R1",
                                        "whitelist": "737K-august-2016"
                                    }
                                ],
                                "description": "Single Cell 5' R2-only",
                                "endedness": "five_prime",
                                "name": "SC5P-R2",
                                "rna": {
                                    "length": null,
                                    "min_length": null,
                                    "offset": 0,
                                    "read_type": "R2"
                                },
                                "rna2": null,
                                "strandedness": "-",
                                "umi": {
                                    "length": 10,
                                    "min_length": null,
                                    "offset": 16,
                                    "read_type": "R1"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "include_introns",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "aligner",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "aligner_subsample_rate",
                            "type": "float",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.SET_ALIGNER_SUBSAMPLE_RATE",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_pd",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "transcriptome_min_score",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 30,
                            "waiting": false
                        },
                        {
                            "id": "trim_polya_min_score",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": 20,
                            "waiting": false
                        },
                        {
                            "id": "trim_tso_min_score",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": 20,
                            "waiting": false
                        },
                        {
                            "id": "targeted_umi_min_read_count",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "total_barcode_counts",
                            "type": "tbcc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/join-ucc6a7a77b3/files/total_barcode_counts.tbcc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "barcode_subset",
                            "type": "blf.json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "counts_bc_order",
                            "type": "csf[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/bc_sort.csf"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "counts_feature_order",
                            "type": "csf[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/feature_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/feature_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/feature_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/feature_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/feature_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/feature_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/feature_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/feature_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/feature_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/feature_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/feature_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/feature_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/feature_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/feature_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/feature_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/feature_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/feature_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/feature_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/feature_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/feature_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/feature_sort.csf"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "bc_umi_info",
                            "type": "bui[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/bc_umi_info.bui"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "pos_sorted",
                            "type": "asf[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/pos_sorted.asf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/pos_sorted.asf"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "bam_header",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/join-ucc6a7a77c8/files/bam_header",
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/join-ucc6a7a77c8/files/barcode_summary.csv",
                            "waiting": false
                        },
                        {
                            "id": "annotation_files",
                            "type": "ann.bincode.lz4[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "per_barcode_metrics",
                            "type": "bmsf[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/metrics_shard.bmsf"
                            ],
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_READ_SHARDS_STRUCT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.SET_ALIGNER_SUBSAMPLE_RATE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian align_and_count"
    },
    {
        "name": "BARCODE_CORRECTION",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 4,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AACTCAGAGAAACGAC",
                                    "valid": false
                                },
                                "start": null
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ACAACCCTAGAAGGGT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AACTCAGAGAAACGAC",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ACATACACAATCCAAC",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ACAACCCTAGAAGGGT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ACCTTTTAACGGTTTC",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ACATACACAATCCAAC",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ACTATCTTCGCATCCC",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ACCTTTTAACGGTTTC",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ACTGAACGATTATATT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ACTATCTTCGCATCCC",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AGAGCGACGGGCGGTG",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ACTGAACGATTATATT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AGCTCCTCCAACTAAG",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AGAGCGACGGGCGGTG",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AGGGGAAATGCCCCAA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AGCTCCTCCAACTAAG",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AGTGGAGTAGCGTAGC",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AGGGGAAATGCCCCAA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ATCCAAAAAAAAAAAA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AGTGGAGTAGCGTAGC",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ATGAGGGTTTATTGAG",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ATCCAAAAAAAAAAAA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CAAAAACATTCACTTT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ATGAGGGTTTATTGAG",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CACACATTCAACACTG",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CAAAAACATTCACTTT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CACCTTGACAGAAAAA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CACACATTCAACACTG",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CAGCCGAGCACATACA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CACCTTGACAGAAAAA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CATCAGAAGTAGGTCA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CAGCCGAGCACATACA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CATTCGCTCTGGTCCG",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CATCAGAAGTAGGTCA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CCAGCGAGGGAGCTGC",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CATTCGCTCTGGTCCG",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CCGAGCCAAGACTCGG",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CCAGCGAGGGAGCTGC",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CCTAGCTGCGGTATCC",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CCGAGCCAAGACTCGG",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CCTTTCTGTAGGTTCA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CCTAGCTGCGGTATCC",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CGATGAGCGTCGGCAT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CCTTTCTGTAGGTTCA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CGCATCATCAGTAGGG",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CGATGAGCGTCGGCAT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CGGCCACACCAGTTAC",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CGCATCATCAGTAGGG",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CGTCTACTCTACCTGT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CGGCCACACCAGTTAC",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTAATTGGTTATCGGT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CGTCTACTCTACCTGT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTATTAAATGTTTCTC",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTAATTGGTTATCGGT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTCGGAGCAACTCCAG",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTATTAAATGTTTCTC",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTCTGGTTCGACAGCA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTCGGAGCAACTCCAG",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTGGTCTGCGAGAGCG",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTCTGGTTCGACAGCA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTTGGCCTCCGGGTGT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTGGTCTGCGAGAGCG",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GAATAGGTTGTGGAGT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTTGGCCTCCGGGTGT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GACGGGCTGTGTGTAC",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GAATAGGTTGTGGAGT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GATAGAATCTCTCTAA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GACGGGCTGTGTGTAC",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GCAATCAGTCATAATC",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GATAGAATCTCTCTAA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GCATCAGTCTAGAGGA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GCAATCAGTCATAATC",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GCGCCAACGGCGGCTC",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GCATCAGTCTAGAGGA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GCGGGTTAAGAATCAA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GCGCCAACGGCGGCTC",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GCTGCTTACTGGGAAT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GCGGGTTAAGAATCAA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GCTGGGCCAGGCATGC",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GCTGCTTACTGGGAAT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GGACAGAAATCACATC",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GCTGGGCCAGGCATGC",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GGCGACTTCCATGGCC",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GGACAGAAATCACATC",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GGGCACTTATGAATGT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GGCGACTTCCATGGCC",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GGGTTGCCCCCCGCCA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GGGCACTTATGAATGT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GTACTCCGTAAAAAAA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GGGTTGCCCCCCGCCA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GTCATTTCCGATCTGT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GTACTCCGTAAAAAAA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GTGCATAGATCTGTGC",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GTCATTTCCGATCTGT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GTTAAGCGCGTCACTA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GTGCATAGATCTGTGC",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TAAGGCGTTCGAGAGC",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GTTAAGCGCGTCACTA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 50,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TACTCGCTCCGCCAGT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TAAGGCGTTCGAGAGC",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 51,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TACTTGACAAATTGCC",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TACTCGCTCCGCCAGT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 52,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TCAATTTGCCACGGGA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TACTTGACAAATTGCC",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 53,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TCACGATCGAATGGGA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TCAATTTGCCACGGGA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 54,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TCCCGATTCTGTCTGT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TCACGATCGAATGGGA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 55,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TCTATTGTACCATTAT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TCCCGATTCTGTCTGT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 56,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TGACTAGTCGCCAAAA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TCTATTGTACCATTAT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 57,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TGCGCAGGTCTTCAAA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TGACTAGTCGCCAAAA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 58,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TGCTGCTGTGTTGTGT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TGCGCAGGTCTTCAAA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 59,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TGGCTTGGTGCTAGCC",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TGCTGCTGTGTTGTGT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 60,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TGTGTTGAAGGAACAT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TGGCTTGGTGCTAGCC",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 61,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TTCCCAGTCGCTGACA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TGTGTTGAAGGAACAT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 62,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TTCTCTCCCATCCGGC",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TTCCCAGTCGCTGACA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 63,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": null,
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TTCTCTCCCATCCGGC",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_well",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "barcode_counts",
                            "type": "bcc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/barcode_counts.bcc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "barcode_segment_counts",
                            "type": "bsc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/barcode_segment_counts.bsc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": {
                                "barcode": [
                                    {
                                        "kind": "gel_bead",
                                        "length": 16,
                                        "offset": 0,
                                        "read_type": "R1",
                                        "whitelist": "737K-august-2016"
                                    }
                                ],
                                "description": "Single Cell 5' R2-only",
                                "endedness": "five_prime",
                                "name": "SC5P-R2",
                                "rna": {
                                    "length": null,
                                    "min_length": null,
                                    "offset": 0,
                                    "read_type": "R2"
                                },
                                "rna2": null,
                                "strandedness": "-",
                                "umi": {
                                    "length": 10,
                                    "min_length": null,
                                    "offset": 16,
                                    "read_type": "R1"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "invalid_uncorrected",
                            "type": "shard[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c6/files/invalid.shard"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "valid_read_metrics",
                            "type": "bcm.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/bc_correct_summary.bcm.bincode",
                            "waiting": false
                        },
                        {
                            "id": "libraries_to_translate",
                            "type": "string[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": [],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "valid_corrected",
                            "type": "shard[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/valid_shard.shard"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "invalid",
                            "type": "shard[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/invalid_shard.shard"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/join-ucc6a7a77b3/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "corrected_barcode_counts",
                            "type": "bcc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/join-ucc6a7a77b3/files/correct_barcode_counts.bcc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "total_barcode_counts",
                            "type": "tbcc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/join-ucc6a7a77b3/files/total_barcode_counts.tbcc.bincode",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian barcode_correction"
    },
    {
        "name": "COLLATE_METRICS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 4,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 4,
                            "__vmem_gb": 4,
                            "sample": "non_multiplexed"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "per_barcode_metrics",
                            "type": "bmsf[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/metrics_shard.bmsf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/metrics_shard.bmsf"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "frf.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/split-ucc6a7a71c0/files/feature_reference.frf.bincode",
                            "waiting": false
                        },
                        {
                            "id": "sample_barcodes_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS/fork0/chnk0-ucc6a7a7c4d/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "per_barcode_metrics",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS/fork0/chnk0-ucc6a7a7c4d/files/per_barcode_metrics.csv",
                            "waiting": false
                        },
                        {
                            "id": "per_lib_type_metrics",
                            "type": "map",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS",
                            "matchedFork": null,
                            "value": {},
                            "waiting": false
                        },
                        {
                            "id": "multi_metrics",
                            "type": "SampleMetrics[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian collate_metrics"
    },
    {
        "name": "MAKE_READ_SHARDS_STRUCT",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_READ_SHARDS_STRUCT",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_READ_SHARDS_STRUCT",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_READ_SHARDS_STRUCT",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_READ_SHARDS_STRUCT/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_READ_SHARDS_STRUCT/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_READ_SHARDS_STRUCT/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "valid_reads",
                            "type": "shard[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c6/files/valid.shard"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "corrected_reads",
                            "type": "shard[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/valid_shard.shard"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "invalid_reads",
                            "type": "shard[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/invalid_shard.shard"
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "read_shards",
                            "type": "ReadShards",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "corrected_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/valid_shard.shard"
                                ],
                                "invalid_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/invalid_shard.shard"
                                ],
                                "valid_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c6/files/valid.shard"
                                ]
                            },
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_READ_SHARDS_STRUCT"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_READ_SHARDS_STRUCT"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "MAKE_SHARD",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 4,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 2,
                            "__vmem_gb": 9,
                            "chunk_id": 0,
                            "feature_reference": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/split-ucc6a7a71c0/files/feature_reference.frf.bincode"
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_well",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": {
                                "barcode": [
                                    {
                                        "kind": "gel_bead",
                                        "length": 16,
                                        "offset": 0,
                                        "read_type": "R1",
                                        "whitelist": "737K-august-2016"
                                    }
                                ],
                                "description": "Single Cell 5' R2-only",
                                "endedness": "five_prime",
                                "name": "SC5P-R2",
                                "rna": {
                                    "length": null,
                                    "min_length": null,
                                    "offset": 0,
                                    "read_type": "R2"
                                },
                                "rna2": null,
                                "strandedness": "-",
                                "umi": {
                                    "length": 10,
                                    "min_length": null,
                                    "offset": 16,
                                    "read_type": "R1"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "read_chunks",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": [
                                {
                                    "chemistry": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell 5' R2-only",
                                        "endedness": "five_prime",
                                        "name": "SC5P-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunk_id": 0,
                                    "fastq_id": "dimitri_RNA",
                                    "fastqs": {
                                        "i1": null,
                                        "i2": null,
                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                        "r1_interleaved": false,
                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                    },
                                    "gem_group": 1,
                                    "library_id": 0,
                                    "library_type": "Gene Expression",
                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                    "read_lengths": {},
                                    "subsample_rate": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "subsample_rate",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "initial_read_pairs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        },
                        {
                            "id": "target_features",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_set",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_set_name",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference_path",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "libraries_to_translate",
                            "type": "string[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": [],
                            "waiting": false
                        },
                        {
                            "id": "write_bc_counts_json",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "valid",
                            "type": "shard[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c6/files/valid.shard"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "invalid",
                            "type": "shard[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c6/files/invalid.shard"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "barcode_counts",
                            "type": "bcc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/barcode_counts.bcc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "barcode_segment_counts",
                            "type": "bsc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/barcode_segment_counts.bsc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "feature_counts",
                            "type": "fbc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/feature_counts.fbc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "total_read_pairs",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": 324387900,
                            "waiting": false
                        },
                        {
                            "id": "paired_end",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "frf.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/split-ucc6a7a71c0/files/feature_reference.frf.bincode",
                            "waiting": false
                        },
                        {
                            "id": "bc_correct_summary",
                            "type": "bcm.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/bc_correct_summary.bcm.bincode",
                            "waiting": false
                        },
                        {
                            "id": "sequencing_metrics",
                            "type": "smf.json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                            "waiting": false
                        },
                        {
                            "id": "bc_counts_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/bc_counts_json.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian make_shard"
    },
    {
        "name": "MERGE_METRICS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MERGE_METRICS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MERGE_METRICS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MERGE_METRICS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MERGE_METRICS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MERGE_METRICS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MERGE_METRICS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "summaries",
                            "type": "json[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/summary.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/join-ucc6a7a77b3/files/summary.json",
                                null,
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS/fork0/chnk0-ucc6a7a7c4d/files/summary.json"
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MERGE_METRICS/fork0/chnk0-ucc6a7a7c50/files/summary.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian merge_metrics"
    },
    {
        "name": "SET_ALIGNER_SUBSAMPLE_RATE",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.SET_ALIGNER_SUBSAMPLE_RATE",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/SET_ALIGNER_SUBSAMPLE_RATE",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/SET_ALIGNER_SUBSAMPLE_RATE",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 8,
                    "__vmem_gb": 11
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/SET_ALIGNER_SUBSAMPLE_RATE/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/SET_ALIGNER_SUBSAMPLE_RATE/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/SET_ALIGNER_SUBSAMPLE_RATE/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/SET_ALIGNER_SUBSAMPLE_RATE/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "rps_limit",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcodes_under_tissue",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "corrected_barcode_counts",
                            "type": "bcc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/join-ucc6a7a77b3/files/correct_barcode_counts.bcc.bincode",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "aligner_subsample_rate",
                            "type": "float",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.SET_ALIGNER_SUBSAMPLE_RATE",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.SET_ALIGNER_SUBSAMPLE_RATE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.SET_ALIGNER_SUBSAMPLE_RATE"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian set_aligner_subsample_rate"
    },
    {
        "name": "WRITE_BARCODE_INDEX",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_INDEX",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_INDEX",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_INDEX/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_INDEX/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_INDEX/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_INDEX/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "barcode_counts",
                            "type": "bcc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/join-ucc6a7a77b3/files/correct_barcode_counts.bcc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "barcodes_under_tissue",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "barcode_index",
                            "type": "bi.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_INDEX/fork0/chnk0-ucc6a7a77c8/files/barcode_index.bi.bincode",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian write_barcode_index"
    },
    {
        "name": "WRITE_BARCODE_SUMMARY",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "unique_gem_groups",
                            "type": "int[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "bc_umi_info",
                            "type": "bui[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/bc_umi_info.bui",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/bc_umi_info.bui"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "frf.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/split-ucc6a7a71c0/files/feature_reference.frf.bincode",
                            "waiting": false
                        },
                        {
                            "id": "barcode_index",
                            "type": "bi.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_INDEX/fork0/chnk0-ucc6a7a77c8/files/barcode_index.bi.bincode",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "barcode_summary",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0/chnk0-ucc6a7a7c4d/files/barcode_summary.h5",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian write_barcode_summary"
    },
    {
        "name": "WRITE_H5_MATRIX",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 2,
                    "__vmem_gb": 5
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_well",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "counts",
                            "type": "csf[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/bc_sort.csf"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "frf.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/split-ucc6a7a71c0/files/feature_reference.frf.bincode",
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": {
                                "barcode": [
                                    {
                                        "kind": "gel_bead",
                                        "length": 16,
                                        "offset": 0,
                                        "read_type": "R1",
                                        "whitelist": "737K-august-2016"
                                    }
                                ],
                                "description": "Single Cell 5' R2-only",
                                "endedness": "five_prime",
                                "name": "SC5P-R2",
                                "rna": {
                                    "length": null,
                                    "min_length": null,
                                    "offset": 0,
                                    "read_type": "R2"
                                },
                                "rna2": null,
                                "strandedness": "-",
                                "umi": {
                                    "length": 10,
                                    "min_length": null,
                                    "offset": 16,
                                    "read_type": "R1"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "barcode_index",
                            "type": "bi.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_INDEX/fork0/chnk0-ucc6a7a77c8/files/barcode_index.bi.bincode",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "matrix",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0-ucc6a7a7c4d/files/raw_feature_bc_matrix.h5",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian write_h5_matrix"
    },
    {
        "name": "WRITE_MATRIX_MARKET",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_MATRIX_MARKET",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_MATRIX_MARKET",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_MATRIX_MARKET",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 2,
                    "__vmem_gb": 5
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_MATRIX_MARKET/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_MATRIX_MARKET/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_MATRIX_MARKET/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_MATRIX_MARKET/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "counts",
                            "type": "csf[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/bc_sort.csf",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/bc_sort.csf"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "frf.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/split-ucc6a7a71c0/files/feature_reference.frf.bincode",
                            "waiting": false
                        },
                        {
                            "id": "barcode_index",
                            "type": "bi.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_INDEX/fork0/chnk0-ucc6a7a77c8/files/barcode_index.bi.bincode",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "feature_bc_matrix",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_MATRIX_MARKET",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_MATRIX_MARKET/fork0/chnk0-ucc6a7a7c4d/files/raw_feature_bc_matrix",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_MATRIX_MARKET"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_MATRIX_MARKET"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_MATRIX_MARKET"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian write_matrix_market"
    },
    {
        "name": "_SLFE_PARTIAL_FIRST_PASS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/_SLFE_PARTIAL_FIRST_PASS",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/_SLFE_PARTIAL_FIRST_PASS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/_SLFE_PARTIAL_FIRST_PASS/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/_SLFE_PARTIAL_FIRST_PASS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/_SLFE_PARTIAL_FIRST_PASS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_well",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "read_chunks",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": [
                                {
                                    "chemistry": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell 5' R2-only",
                                        "endedness": "five_prime",
                                        "name": "SC5P-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunk_id": 0,
                                    "fastq_id": "dimitri_RNA",
                                    "fastqs": {
                                        "i1": null,
                                        "i2": null,
                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                        "r1_interleaved": false,
                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                    },
                                    "gem_group": 1,
                                    "library_id": 0,
                                    "library_type": "Gene Expression",
                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                    "read_lengths": {},
                                    "subsample_rate": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        },
                        {
                            "id": "read_shards",
                            "type": "ReadShards",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "corrected_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/valid_shard.shard"
                                ],
                                "invalid_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/invalid_shard.shard"
                                ],
                                "valid_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c6/files/valid.shard"
                                ]
                            },
                            "waiting": false
                        },
                        {
                            "id": "feature_counts",
                            "type": "fbc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/feature_counts.fbc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "frf.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/split-ucc6a7a71c0/files/feature_reference.frf.bincode",
                            "waiting": false
                        },
                        {
                            "id": "target_set",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": {
                                "barcode": [
                                    {
                                        "kind": "gel_bead",
                                        "length": 16,
                                        "offset": 0,
                                        "read_type": "R1",
                                        "whitelist": "737K-august-2016"
                                    }
                                ],
                                "description": "Single Cell 5' R2-only",
                                "endedness": "five_prime",
                                "name": "SC5P-R2",
                                "rna": {
                                    "length": null,
                                    "min_length": null,
                                    "offset": 0,
                                    "read_type": "R2"
                                },
                                "rna2": null,
                                "strandedness": "-",
                                "umi": {
                                    "length": 10,
                                    "min_length": null,
                                    "offset": 16,
                                    "read_type": "R1"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "include_introns",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "aligner",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_pd",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "trim_polya_min_score",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": 20,
                            "waiting": false
                        },
                        {
                            "id": "trim_tso_min_score",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": 20,
                            "waiting": false
                        },
                        {
                            "id": "total_barcode_counts",
                            "type": "tbcc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/join-ucc6a7a77b3/files/total_barcode_counts.tbcc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "corrected_barcode_counts",
                            "type": "bcc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/join-ucc6a7a77b3/files/correct_barcode_counts.bcc.bincode",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "umi_read_count_threshold",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umi_filtering_summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_READ_SHARDS_STRUCT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SET_TARGETED_UMI_FILTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "INITIAL_ALIGN_AND_COUNT",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/_SLFE_PARTIAL_FIRST_PASS/INITIAL_ALIGN_AND_COUNT",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/_SLFE_PARTIAL_FIRST_PASS/INITIAL_ALIGN_AND_COUNT",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/_SLFE_PARTIAL_FIRST_PASS/INITIAL_ALIGN_AND_COUNT/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/_SLFE_PARTIAL_FIRST_PASS/INITIAL_ALIGN_AND_COUNT/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/_SLFE_PARTIAL_FIRST_PASS/INITIAL_ALIGN_AND_COUNT/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_well",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "read_chunks",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": [
                                {
                                    "chemistry": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell 5' R2-only",
                                        "endedness": "five_prime",
                                        "name": "SC5P-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunk_id": 0,
                                    "fastq_id": "dimitri_RNA",
                                    "fastqs": {
                                        "i1": null,
                                        "i2": null,
                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                        "r1_interleaved": false,
                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                    },
                                    "gem_group": 1,
                                    "library_id": 0,
                                    "library_type": "Gene Expression",
                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                    "read_lengths": {},
                                    "subsample_rate": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        },
                        {
                            "id": "read_shards",
                            "type": "ReadShards",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "corrected_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/valid_shard.shard"
                                ],
                                "invalid_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/invalid_shard.shard"
                                ],
                                "valid_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c6/files/valid.shard"
                                ]
                            },
                            "waiting": false
                        },
                        {
                            "id": "feature_counts",
                            "type": "fbc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/feature_counts.fbc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "frf.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/split-ucc6a7a71c0/files/feature_reference.frf.bincode",
                            "waiting": false
                        },
                        {
                            "id": "target_set",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": {
                                "barcode": [
                                    {
                                        "kind": "gel_bead",
                                        "length": 16,
                                        "offset": 0,
                                        "read_type": "R1",
                                        "whitelist": "737K-august-2016"
                                    }
                                ],
                                "description": "Single Cell 5' R2-only",
                                "endedness": "five_prime",
                                "name": "SC5P-R2",
                                "rna": {
                                    "length": null,
                                    "min_length": null,
                                    "offset": 0,
                                    "read_type": "R2"
                                },
                                "rna2": null,
                                "strandedness": "-",
                                "umi": {
                                    "length": 10,
                                    "min_length": null,
                                    "offset": 16,
                                    "read_type": "R1"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "include_introns",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "aligner",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "aligner_subsample_rate",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_pd",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "transcriptome_min_score",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 30,
                            "waiting": false
                        },
                        {
                            "id": "trim_polya_min_score",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": 20,
                            "waiting": false
                        },
                        {
                            "id": "trim_tso_min_score",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": 20,
                            "waiting": false
                        },
                        {
                            "id": "targeted_umi_min_read_count",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "total_barcode_counts",
                            "type": "tbcc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/join-ucc6a7a77b3/files/total_barcode_counts.tbcc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "barcode_subset",
                            "type": "blf.json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SUBSAMPLE_BARCODES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "counts_bc_order",
                            "type": "csf[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "counts_feature_order",
                            "type": "csf[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "bc_umi_info",
                            "type": "bui[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "pos_sorted",
                            "type": "asf[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "bam_header",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "annotation_files",
                            "type": "ann.bincode.lz4[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "per_barcode_metrics",
                            "type": "bmsf[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR.PARSE_TARGET_FEATURES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_READ_SHARDS_STRUCT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SUBSAMPLE_BARCODES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian align_and_count"
    },
    {
        "name": "SET_TARGETED_UMI_FILTER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SET_TARGETED_UMI_FILTER",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/_SLFE_PARTIAL_FIRST_PASS/SET_TARGETED_UMI_FILTER",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/_SLFE_PARTIAL_FIRST_PASS/SET_TARGETED_UMI_FILTER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/_SLFE_PARTIAL_FIRST_PASS/SET_TARGETED_UMI_FILTER/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/_SLFE_PARTIAL_FIRST_PASS/SET_TARGETED_UMI_FILTER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/_SLFE_PARTIAL_FIRST_PASS/SET_TARGETED_UMI_FILTER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "bc_umi_info",
                            "type": "bui[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "frf.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/split-ucc6a7a71c0/files/feature_reference.frf.bincode",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "umi_read_count_threshold",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SET_TARGETED_UMI_FILTER",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SET_TARGETED_UMI_FILTER",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MAKE_SHARD",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SET_TARGETED_UMI_FILTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SET_TARGETED_UMI_FILTER"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian set_targeted_umi_filter"
    },
    {
        "name": "SUBSAMPLE_BARCODES",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SUBSAMPLE_BARCODES",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/_SLFE_PARTIAL_FIRST_PASS/SUBSAMPLE_BARCODES",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/_SLFE_PARTIAL_FIRST_PASS/SUBSAMPLE_BARCODES",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/_SLFE_PARTIAL_FIRST_PASS/SUBSAMPLE_BARCODES/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/_SLFE_PARTIAL_FIRST_PASS/SUBSAMPLE_BARCODES/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/_SLFE_PARTIAL_FIRST_PASS/SUBSAMPLE_BARCODES/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "corrected_barcode_counts",
                            "type": "bcc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/join-ucc6a7a77b3/files/correct_barcode_counts.bcc.bincode",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "barcode_subset",
                            "type": "blf.json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SUBSAMPLE_BARCODES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SUBSAMPLE_BARCODES"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian subsample_barcodes"
    },
    {
        "name": "VDJ_B_GEM_WELL_PROCESSOR",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "chemistry_type",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "SCVDJ-R2",
                            "waiting": false
                        },
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "IG",
                            "waiting": false
                        },
                        {
                            "id": "inputs",
                            "type": "VdjAssemblerInputs",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_BCR",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "VDJ",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_BCR"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "custom_chemistry_def": null,
                                "r1_length": null,
                                "r2_length": null,
                                "initial_reads": null,
                                "subsample_rate": null,
                                "denovo": false,
                                "force_cells": null,
                                "inner_enrichment_primers": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "gen_inputs",
                            "type": "VdjGenInputs",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": {
                                "reference_path": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                                "vdj_reference_path": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0"
                            },
                            "waiting": false
                        },
                        {
                            "id": "gex_filtered_barcodes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "is_non_targeted_gex",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "setup_chunks_outs",
                            "type": "MULTI_SETUP_CHUNKS",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "barcode_whitelist": "737K-august-2016",
                                "chemistry_def": {
                                    "barcode": [
                                        {
                                            "kind": "gel_bead",
                                            "length": 16,
                                            "offset": 0,
                                            "read_type": "R1",
                                            "whitelist": "737K-august-2016"
                                        }
                                    ],
                                    "description": "Single Cell V(D)J R2-only",
                                    "endedness": "five_prime",
                                    "name": "SCVDJ-R2",
                                    "rna": {
                                        "length": null,
                                        "min_length": null,
                                        "offset": 0,
                                        "read_type": "R2"
                                    },
                                    "rna2": null,
                                    "strandedness": "-",
                                    "umi": {
                                        "length": 10,
                                        "min_length": null,
                                        "offset": 16,
                                        "read_type": "R1"
                                    }
                                },
                                "chunks": [
                                    {
                                        "chemistry": {
                                            "barcode": [
                                                {
                                                    "kind": "gel_bead",
                                                    "length": 16,
                                                    "offset": 0,
                                                    "read_type": "R1",
                                                    "whitelist": "737K-august-2016"
                                                }
                                            ],
                                            "description": "Single Cell V(D)J R2-only",
                                            "endedness": "five_prime",
                                            "name": "SCVDJ-R2",
                                            "rna": {
                                                "length": null,
                                                "min_length": null,
                                                "offset": 0,
                                                "read_type": "R2"
                                            },
                                            "rna2": null,
                                            "strandedness": "-",
                                            "umi": {
                                                "length": 10,
                                                "min_length": null,
                                                "offset": 16,
                                                "read_type": "R1"
                                            }
                                        },
                                        "chunk_id": 0,
                                        "fastq_id": "dimitri_BCR",
                                        "fastqs": {
                                            "i1": null,
                                            "i2": null,
                                            "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_BCR_S1_L001_R1_001.fastq.gz",
                                            "r1_interleaved": false,
                                            "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_BCR_S1_L001_R2_001.fastq.gz"
                                        },
                                        "gem_group": 1,
                                        "library_id": 0,
                                        "library_type": "VDJ",
                                        "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                        "read_lengths": {},
                                        "subsample_rate": null
                                    }
                                ]
                            },
                            "waiting": false
                        },
                        {
                            "id": "assembler_outs",
                            "type": "SC_VDJ_CONTIG_ASSEMBLER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "assemblable_reads_per_bc": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/assemblable_reads_per_bc.arp.bincode",
                                "barcode_support": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/barcode_support.csv",
                                "barcodes_in_chunks": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk000-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk001-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk002-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk003-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk004-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk005-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk006-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk007-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk008-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk009-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk010-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk011-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk012-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk013-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk014-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk015-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk016-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk017-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk018-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk019-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk020-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk021-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk022-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk023-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk024-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk025-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk026-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk027-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk028-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk029-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk030-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk031-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk032-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk033-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk034-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk035-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk036-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk037-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk038-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk039-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk040-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk041-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk042-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk043-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk044-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk045-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk046-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk047-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk048-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk049-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk050-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk051-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk052-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk053-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk054-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk055-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk056-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk057-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk058-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk059-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk060-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk061-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk062-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk063-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk064-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk065-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk066-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk067-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk068-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk069-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk070-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk071-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk072-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk073-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk074-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk075-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk076-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk077-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk078-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk079-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk080-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk081-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk082-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk083-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk084-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk085-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk086-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk087-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk088-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk089-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk090-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk091-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk092-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk093-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk094-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk095-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk096-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk097-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk098-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk099-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk100-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk101-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk102-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk103-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk104-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk105-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk106-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk107-ucc6a7a72ce/files/barcodes_in_chunk.json"
                                ],
                                "contig_annotations": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                                "contig_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_bam.bam",
                                "contig_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_bam.bam.bai",
                                "corrected_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72b0/files/corrected_barcode_counts.json",
                                "gem_groups": [
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1
                                ],
                                "n50_n50_rpu": 288,
                                "processed_read_pairs": 20716612,
                                "raw_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72b0/files/raw_barcode_counts.json",
                                "read_shards": {
                                    "corrected_reads": [
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                                    ],
                                    "invalid_reads": [
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/invalid_shard.shard"
                                    ],
                                    "valid_reads": [
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard"
                                    ]
                                },
                                "report": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/report.txt",
                                "sequencing_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                                "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/chnk0-ucc6a7a73e1/files/summary.json",
                                "summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/summary_tsv.tsv",
                                "total_read_pairs": 56633794,
                                "umi_summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/umi_summary_tsv.tsv",
                                "unmapped_sample_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/unmapped_sample_fastq.fastq"
                            },
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "MULTI_SETUP_CHUNKS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/MULTI_SETUP_CHUNKS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/MULTI_SETUP_CHUNKS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/MULTI_SETUP_CHUNKS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/MULTI_SETUP_CHUNKS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/MULTI_SETUP_CHUNKS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/MULTI_SETUP_CHUNKS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "chemistry_name",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "SCVDJ-R2",
                            "waiting": false
                        },
                        {
                            "id": "default_library_type",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "VDJ",
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "fastq_id": "dimitri_BCR",
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": 1,
                                    "lanes": null,
                                    "library_type": "VDJ",
                                    "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                    "sample_indices": null,
                                    "sample_names": [
                                        "dimitri_BCR"
                                    ],
                                    "subsample_rate": null,
                                    "target_set": null,
                                    "target_set_name": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "custom_chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "chunks",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": [
                                {
                                    "chemistry": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell V(D)J R2-only",
                                        "endedness": "five_prime",
                                        "name": "SCVDJ-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunk_id": 0,
                                    "fastq_id": "dimitri_BCR",
                                    "fastqs": {
                                        "i1": null,
                                        "i2": null,
                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_BCR_S1_L001_R1_001.fastq.gz",
                                        "r1_interleaved": false,
                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_BCR_S1_L001_R2_001.fastq.gz"
                                    },
                                    "gem_group": 1,
                                    "library_id": 0,
                                    "library_type": "VDJ",
                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                    "read_lengths": {},
                                    "subsample_rate": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": {
                                "barcode": [
                                    {
                                        "kind": "gel_bead",
                                        "length": 16,
                                        "offset": 0,
                                        "read_type": "R1",
                                        "whitelist": "737K-august-2016"
                                    }
                                ],
                                "description": "Single Cell V(D)J R2-only",
                                "endedness": "five_prime",
                                "name": "SCVDJ-R2",
                                "rna": {
                                    "length": null,
                                    "min_length": null,
                                    "offset": 0,
                                    "read_type": "R2"
                                },
                                "rna2": null,
                                "strandedness": "-",
                                "umi": {
                                    "length": 10,
                                    "min_length": null,
                                    "offset": 16,
                                    "read_type": "R1"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": "737K-august-2016",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian setup_chunks"
    },
    {
        "name": "SC_VDJ_CONTIG_ASSEMBLER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_well",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": {
                                "barcode": [
                                    {
                                        "kind": "gel_bead",
                                        "length": 16,
                                        "offset": 0,
                                        "read_type": "R1",
                                        "whitelist": "737K-august-2016"
                                    }
                                ],
                                "description": "Single Cell V(D)J R2-only",
                                "endedness": "five_prime",
                                "name": "SCVDJ-R2",
                                "rna": {
                                    "length": null,
                                    "min_length": null,
                                    "offset": 0,
                                    "read_type": "R2"
                                },
                                "rna2": null,
                                "strandedness": "-",
                                "umi": {
                                    "length": 10,
                                    "min_length": null,
                                    "offset": 16,
                                    "read_type": "R1"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "chunks",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": [
                                {
                                    "chemistry": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell V(D)J R2-only",
                                        "endedness": "five_prime",
                                        "name": "SCVDJ-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunk_id": 0,
                                    "fastq_id": "dimitri_BCR",
                                    "fastqs": {
                                        "i1": null,
                                        "i2": null,
                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_BCR_S1_L001_R1_001.fastq.gz",
                                        "r1_interleaved": false,
                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_BCR_S1_L001_R2_001.fastq.gz"
                                    },
                                    "gem_group": 1,
                                    "library_id": 0,
                                    "library_type": "VDJ",
                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                    "read_lengths": {},
                                    "subsample_rate": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "inner_primers",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "vdj_reference_folder",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
                            "waiting": false
                        },
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "IG",
                            "waiting": false
                        },
                        {
                            "id": "gex_filtered_barcodes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "is_non_targeted_gex",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "initial_reads",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "subsample_rate",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "denovo",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/chnk0-ucc6a7a73e1/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "read_shards",
                            "type": "ReadShards",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "corrected_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                                ],
                                "invalid_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/invalid_shard.shard"
                                ],
                                "valid_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard"
                                ]
                            },
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "raw_barcode_counts",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72b0/files/raw_barcode_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "corrected_barcode_counts",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72b0/files/corrected_barcode_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "n50_n50_rpu",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": 288,
                            "waiting": false
                        },
                        {
                            "id": "processed_read_pairs",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": 20716612,
                            "waiting": false
                        },
                        {
                            "id": "contig_bam",
                            "type": "bam",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_bam.bam",
                            "waiting": false
                        },
                        {
                            "id": "contig_bam_bai",
                            "type": "bam.bai",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_bam.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "summary_tsv",
                            "type": "tsv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/summary_tsv.tsv",
                            "waiting": false
                        },
                        {
                            "id": "umi_summary_tsv",
                            "type": "tsv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/umi_summary_tsv.tsv",
                            "waiting": false
                        },
                        {
                            "id": "contig_annotations",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "barcode_support",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/barcode_support.csv",
                            "waiting": false
                        },
                        {
                            "id": "barcodes_in_chunks",
                            "type": "json[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk000-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk001-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk002-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk003-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk004-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk005-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk006-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk007-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk008-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk009-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk010-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk011-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk012-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk013-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk014-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk015-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk016-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk017-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk018-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk019-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk020-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk021-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk022-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk023-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk024-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk025-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk026-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk027-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk028-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk029-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk030-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk031-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk032-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk033-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk034-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk035-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk036-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk037-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk038-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk039-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk040-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk041-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk042-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk043-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk044-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk045-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk046-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk047-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk048-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk049-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk050-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk051-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk052-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk053-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk054-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk055-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk056-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk057-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk058-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk059-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk060-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk061-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk062-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk063-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk064-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk065-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk066-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk067-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk068-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk069-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk070-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk071-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk072-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk073-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk074-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk075-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk076-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk077-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk078-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk079-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk080-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk081-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk082-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk083-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk084-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk085-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk086-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk087-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk088-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk089-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk090-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk091-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk092-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk093-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk094-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk095-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk096-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk097-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk098-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk099-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk100-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk101-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk102-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk103-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk104-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk105-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk106-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk107-ucc6a7a72ce/files/barcodes_in_chunk.json"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "unmapped_sample_fastq",
                            "type": "fastq",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/unmapped_sample_fastq.fastq",
                            "waiting": false
                        },
                        {
                            "id": "report",
                            "type": "txt",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/report.txt",
                            "waiting": false
                        },
                        {
                            "id": "total_read_pairs",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": 56633794,
                            "waiting": false
                        },
                        {
                            "id": "assemblable_reads_per_bc",
                            "type": "arp.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/assemblable_reads_per_bc.arp.bincode",
                            "waiting": false
                        },
                        {
                            "id": "sequencing_metrics",
                            "type": "smf.json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "ASSEMBLE_VDJ",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 4,
                    "__mem_gb": 6,
                    "__vmem_gb": 9
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 0,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk000-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk000",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 1,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk001-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk001",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 2,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk002-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk002",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 3,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk003-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk003",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 4,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk004-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk004",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 5,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk005-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk005",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 6,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk006-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk006",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 7,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk007-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk007",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 8,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk008-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk008",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 9,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk009-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk009",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 10,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk010-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk010",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 11,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk011-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk011",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 12,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk012-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk012",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 13,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk013-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk013",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 14,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk014-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk014",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 15,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk015-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk015",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 16,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk016-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk016",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 17,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk017-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk017",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 18,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk018-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk018",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 19,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk019-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk019",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 20,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk020-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk020",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 21,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk021-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk021",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 22,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk022-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk022",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 23,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk023-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk023",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 24,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk024-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk024",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 25,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk025-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk025",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 26,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk026-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk026",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 27,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk027-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk027",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 28,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk028-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk028",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 29,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk029-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk029",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 30,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk030-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk030",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 31,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk031-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk031",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 32,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk032-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk032",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 33,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk033-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk033",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 34,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk034-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk034",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 35,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk035-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk035",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 36,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk036-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk036",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 37,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk037-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk037",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 38,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk038-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk038",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 39,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk039-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk039",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 40,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk040-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk040",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 41,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk041-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk041",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 42,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk042-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk042",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 43,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk043-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk043",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 44,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk044-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk044",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 45,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk045-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk045",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 46,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk046-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk046",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 47,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk047-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk047",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 48,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk048-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk048",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 49,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk049-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk049",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 50,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 50,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk050-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk050",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 51,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 51,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk051-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk051",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 52,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 52,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk052-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk052",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 53,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 53,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk053-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk053",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 54,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 54,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk054-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk054",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 55,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 55,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk055-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk055",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 56,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 56,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk056-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk056",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 57,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 57,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk057-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk057",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 58,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 58,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk058-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk058",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 59,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 59,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk059-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk059",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 60,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 60,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk060-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk060",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 61,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 61,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk061-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk061",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 62,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 62,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk062-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk062",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 63,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 63,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk063-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk063",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 64,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 64,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk064-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk064",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 65,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 65,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk065-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk065",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 66,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 66,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk066-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk066",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 67,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 67,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk067-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk067",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 68,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 68,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk068-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk068",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 69,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 69,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk069-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk069",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 70,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 70,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk070-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk070",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 71,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 71,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk071-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk071",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 72,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 72,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk072-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk072",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 73,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 73,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk073-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk073",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 74,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 74,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk074-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk074",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 75,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 75,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk075-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk075",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 76,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 76,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk076-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk076",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 77,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 77,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk077-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk077",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 78,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 78,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk078-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk078",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 79,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 79,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk079-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk079",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 80,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 80,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk080-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk080",
                            "names": [
                                "args",
                                "complete",
                                "heartbeat",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 81,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 81,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk081-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk081",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 82,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 82,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk082-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk082",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 83,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 83,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk083-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk083",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 84,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 84,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk084-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk084",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 85,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 85,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk085-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk085",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 86,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 86,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk086-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk086",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 87,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 87,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk087-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk087",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 88,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 88,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk088-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk088",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 89,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 89,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk089-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk089",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 90,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 90,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk090-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk090",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 91,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 91,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk091-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk091",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 92,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 92,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk092-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk092",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 93,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 93,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk093-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk093",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 94,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 94,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk094-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk094",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 95,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 95,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk095-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk095",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 96,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 96,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk096-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk096",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 97,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 97,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk097-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk097",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 98,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 98,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk098-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk098",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 99,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 99,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk099-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk099",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 100,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 100,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk100-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk100",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 101,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 101,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk101-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk101",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 102,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 102,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk102-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk102",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 103,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 103,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk103-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk103",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 104,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 104,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk104-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk104",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 105,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 105,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk105-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk105",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 106,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 106,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk106-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk106",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 107,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 107,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk107-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk107",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "bc_sorted_rna_reads",
                            "type": "bincode.lz4[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk000-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk001-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk002-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk003-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk004-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk005-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk006-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk007-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk008-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk009-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk010-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk011-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk012-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk013-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk014-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk015-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk016-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk017-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk018-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk019-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk020-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk021-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk022-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk023-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk024-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk025-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk026-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk027-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk028-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk029-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk030-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk031-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk032-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk033-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk034-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk035-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk036-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk037-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk038-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk039-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk040-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk041-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk042-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk043-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk044-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk045-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk046-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk047-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk048-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk049-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk050-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk051-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk052-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk053-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk054-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk055-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk056-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk057-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk058-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk059-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk060-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk061-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk062-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk063-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk064-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk065-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk066-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk067-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk068-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk069-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk070-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk071-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk072-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk073-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk074-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk075-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk076-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk077-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk078-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk079-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk080-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk081-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk082-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk083-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk084-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk085-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk086-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk087-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk088-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk089-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk090-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk091-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk092-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk093-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk094-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk095-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk096-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk097-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk098-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk099-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk100-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk101-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk102-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk103-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk104-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk105-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk106-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk107-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "paired_end",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
                            "waiting": false
                        },
                        {
                            "id": "n50_n50_rpu",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": 288,
                            "waiting": false
                        },
                        {
                            "id": "npairs",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": 20716612,
                            "waiting": false
                        },
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "IG",
                            "waiting": false
                        },
                        {
                            "id": "denovo",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "inner_enrichment_primers",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "total_read_pairs",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": 56633794,
                            "waiting": false
                        },
                        {
                            "id": "corrected_bc_counts",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72b0/files/corrected_barcode_counts.json",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "contig_bam",
                            "type": "bam",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_bam.bam",
                            "waiting": false
                        },
                        {
                            "id": "contig_bam_bai",
                            "type": "bam.bai",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_bam.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "summary_tsv",
                            "type": "tsv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/summary_tsv.tsv",
                            "waiting": false
                        },
                        {
                            "id": "umi_summary_tsv",
                            "type": "tsv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/umi_summary_tsv.tsv",
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/metrics_summary_json.json",
                            "waiting": false
                        },
                        {
                            "id": "contig_annotations",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "barcode_support",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/barcode_support.csv",
                            "waiting": false
                        },
                        {
                            "id": "barcodes_in_chunks",
                            "type": "json[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk000-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk001-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk002-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk003-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk004-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk005-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk006-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk007-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk008-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk009-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk010-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk011-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk012-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk013-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk014-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk015-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk016-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk017-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk018-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk019-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk020-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk021-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk022-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk023-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk024-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk025-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk026-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk027-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk028-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk029-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk030-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk031-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk032-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk033-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk034-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk035-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk036-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk037-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk038-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk039-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk040-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk041-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk042-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk043-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk044-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk045-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk046-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk047-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk048-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk049-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk050-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk051-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk052-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk053-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk054-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk055-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk056-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk057-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk058-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk059-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk060-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk061-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk062-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk063-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk064-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk065-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk066-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk067-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk068-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk069-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk070-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk071-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk072-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk073-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk074-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk075-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk076-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk077-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk078-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk079-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk080-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk081-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk082-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk083-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk084-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk085-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk086-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk087-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk088-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk089-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk090-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk091-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk092-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk093-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk094-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk095-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk096-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk097-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk098-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk099-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk100-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk101-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk102-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk103-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk104-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk105-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk106-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk107-ucc6a7a72ce/files/barcodes_in_chunk.json"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "assemblable_reads_per_bc",
                            "type": "arp.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/assemblable_reads_per_bc.arp.bincode",
                            "waiting": false
                        },
                        {
                            "id": "align_info",
                            "type": "txt",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/align_info.txt",
                            "waiting": false
                        },
                        {
                            "id": "unmapped_sample_fastq",
                            "type": "fastq",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/unmapped_sample_fastq.fastq",
                            "waiting": false
                        },
                        {
                            "id": "report",
                            "type": "txt",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/report.txt",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian assembly"
    },
    {
        "name": "BARCODE_CORRECTION",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 4,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ATCATGGTTCGATTAG",
                                    "valid": false
                                },
                                "start": null
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CCCAAACCAGATAATG",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ATCATGGTTCGATTAG",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTCGTCAGTGGTGGCC",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CCCAAACCAGATAATG",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GCTCTTGCGGCGGCTC",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTCGTCAGTGGTGGCC",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GTATCTGTTACGCGCA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GCTCTTGCGGCGGCTC",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TGCACCTGTAAGTTCA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GTATCTGTTACGCGCA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": null,
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TGCACCTGTAAGTTCA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_well",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "barcode_counts",
                            "type": "bcc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/barcode_counts.bcc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "barcode_segment_counts",
                            "type": "bsc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/barcode_segment_counts.bsc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": {
                                "barcode": [
                                    {
                                        "kind": "gel_bead",
                                        "length": 16,
                                        "offset": 0,
                                        "read_type": "R1",
                                        "whitelist": "737K-august-2016"
                                    }
                                ],
                                "description": "Single Cell V(D)J R2-only",
                                "endedness": "five_prime",
                                "name": "SCVDJ-R2",
                                "rna": {
                                    "length": null,
                                    "min_length": null,
                                    "offset": 0,
                                    "read_type": "R2"
                                },
                                "rna2": null,
                                "strandedness": "-",
                                "umi": {
                                    "length": 10,
                                    "min_length": null,
                                    "offset": 16,
                                    "read_type": "R1"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "invalid_uncorrected",
                            "type": "shard[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/invalid.shard"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "valid_read_metrics",
                            "type": "bcm.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/bc_correct_summary.bcm.bincode",
                            "waiting": false
                        },
                        {
                            "id": "libraries_to_translate",
                            "type": "string[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "valid_corrected",
                            "type": "shard[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "invalid",
                            "type": "shard[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/invalid_shard.shard"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/join-ucc6a7a72ab/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "corrected_barcode_counts",
                            "type": "bcc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/join-ucc6a7a72ab/files/correct_barcode_counts.bcc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "total_barcode_counts",
                            "type": "tbcc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/join-ucc6a7a72ab/files/total_barcode_counts.tbcc.bincode",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian barcode_correction"
    },
    {
        "name": "HANDLE_GEX_CELLS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "asm_contig_annotations",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "is_non_targeted_gex",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "contig_annotations",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian handle_gex_cells"
    },
    {
        "name": "MAKE_SHARD",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 4,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 2,
                            "__vmem_gb": 9,
                            "chunk_id": 0,
                            "feature_reference": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_well",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": {
                                "barcode": [
                                    {
                                        "kind": "gel_bead",
                                        "length": 16,
                                        "offset": 0,
                                        "read_type": "R1",
                                        "whitelist": "737K-august-2016"
                                    }
                                ],
                                "description": "Single Cell V(D)J R2-only",
                                "endedness": "five_prime",
                                "name": "SCVDJ-R2",
                                "rna": {
                                    "length": null,
                                    "min_length": null,
                                    "offset": 0,
                                    "read_type": "R2"
                                },
                                "rna2": null,
                                "strandedness": "-",
                                "umi": {
                                    "length": 10,
                                    "min_length": null,
                                    "offset": 16,
                                    "read_type": "R1"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "read_chunks",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": [
                                {
                                    "chemistry": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell V(D)J R2-only",
                                        "endedness": "five_prime",
                                        "name": "SCVDJ-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunk_id": 0,
                                    "fastq_id": "dimitri_BCR",
                                    "fastqs": {
                                        "i1": null,
                                        "i2": null,
                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_BCR_S1_L001_R1_001.fastq.gz",
                                        "r1_interleaved": false,
                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_BCR_S1_L001_R2_001.fastq.gz"
                                    },
                                    "gem_group": 1,
                                    "library_id": 0,
                                    "library_type": "VDJ",
                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                    "read_lengths": {},
                                    "subsample_rate": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "subsample_rate",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "initial_read_pairs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "libraries_to_translate",
                            "type": "string[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_features",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_set",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_set_name",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference_path",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "write_bc_counts_json",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "valid",
                            "type": "shard[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "invalid",
                            "type": "shard[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/invalid.shard"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "barcode_counts",
                            "type": "bcc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/barcode_counts.bcc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "barcode_segment_counts",
                            "type": "bsc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/barcode_segment_counts.bsc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "feature_counts",
                            "type": "fbc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/feature_counts.fbc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "total_read_pairs",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": 56633794,
                            "waiting": false
                        },
                        {
                            "id": "paired_end",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "frf.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "bc_correct_summary",
                            "type": "bcm.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/bc_correct_summary.bcm.bincode",
                            "waiting": false
                        },
                        {
                            "id": "sequencing_metrics",
                            "type": "smf.json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                            "waiting": false
                        },
                        {
                            "id": "bc_counts_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/bc_counts_json.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian make_shard"
    },
    {
        "name": "MERGE_METRICS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "summaries",
                            "type": "json[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/summary.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/join-ucc6a7a72ab/files/summary.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/metrics_summary_json.json"
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/chnk0-ucc6a7a73e1/files/summary.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian merge_metrics"
    },
    {
        "name": "RUST_BRIDGE",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AACTCCCTCTAACTCT",
                                    "valid": true
                                },
                                "start": null
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk000",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AACTGGTGTTATCGGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AACTCCCTCTAACTCT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk001",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AACTTTCGTATCTGCA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AACTGGTGTTATCGGT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk002",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AAGACCTGTCTTGCGG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AACTTTCGTATCTGCA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk003",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ACATCAGCAAGTCTAC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AAGACCTGTCTTGCGG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk004",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ACCGTAAAGGATGGTC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ACATCAGCAAGTCTAC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk005",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ACCGTAATCAGCAACT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ACCGTAAAGGATGGTC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk006",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ACCTTTAGTAGAAAGG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ACCGTAATCAGCAACT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk007",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AGAGTGGTCGGAAATA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ACCTTTAGTAGAAAGG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk008",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AGATTGCGTTGGTAAA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AGAGTGGTCGGAAATA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk009",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AGCAGCCCAGGTGGAT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AGATTGCGTTGGTAAA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk010",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AGGCCGTAGCGTTCCG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AGCAGCCCAGGTGGAT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk011",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AGTGAGGGTTGACGTT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AGGCCGTAGCGTTCCG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk012",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AGTGGGACAAGGTGTG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AGTGAGGGTTGACGTT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk013",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AGTGTCAAGATATGGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AGTGGGACAAGGTGTG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk014",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CAACTAGTCTCGTATT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AGTGTCAAGATATGGT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk015",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CACAGTATCAGCATGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CAACTAGTCTCGTATT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk016",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CACATTTCAAGTAGTA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CACAGTATCAGCATGT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk017",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CACCACTCACAACGCC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CACATTTCAAGTAGTA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk018",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CACCAGGGTCGGATCC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CACCACTCACAACGCC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk019",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CACCTTGTCCAATGGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CACCAGGGTCGGATCC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk020",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CACTCCACAGCCAGAA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CACCTTGTCCAATGGT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk021",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CAGCTGGGTCACTGGC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CACTCCACAGCCAGAA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk022",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CATCCACTCGCGTTTC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CAGCTGGGTCACTGGC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk023",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CATCGAATCTTTAGTC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CATCCACTCGCGTTTC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk024",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CATGACATCATGCAAC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CATCGAATCTTTAGTC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk025",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CATGGCGAGTACGTAA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CATGACATCATGCAAC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk026",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CATTATCTCTGCGACG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CATGGCGAGTACGTAA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk027",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CCGTACTCATCCAACA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CATTATCTCTGCGACG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk028",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CCGTTCACAGCTTCGG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CCGTACTCATCCAACA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk029",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CCTAAAGGTATAATGG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CCGTTCACAGCTTCGG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk030",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CCTACACGTAACGCGA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CCTAAAGGTATAATGG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk031",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CCTAGCTAGACTAGAT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CCTACACGTAACGCGA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk032",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CCTCTGACAGCCACCA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CCTAGCTAGACTAGAT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk033",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CGATCGGAGGAATCGC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CCTCTGACAGCCACCA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk034",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CGATCGGTCTGACCTC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CGATCGGAGGAATCGC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk035",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CGATGTAAGTGGGATC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CGATCGGTCTGACCTC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk036",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CGATTGAAGCCACTAT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CGATGTAAGTGGGATC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk037",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CGCGGTACAATAACGA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CGATTGAAGCCACTAT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk038",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CGCGTTTTCTTTAGGG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CGCGGTACAATAACGA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk039",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CGTTCTGCACAACTGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CGCGTTTTCTTTAGGG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk040",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTAACTTTCAGTCCCT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CGTTCTGCACAACTGT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk041",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTAATGGCACTCGACG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTAACTTTCAGTCCCT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk042",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTACACCCAGCCAGAA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTAATGGCACTCGACG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk043",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTACATTCAGCGAACA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTACACCCAGCCAGAA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk044",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTCAGAACATGAGCGA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTACATTCAGCGAACA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk045",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTCCTAGAGCGTTGCC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTCAGAACATGAGCGA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk046",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTCGAAACAATAGAGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTCCTAGAGCGTTGCC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk047",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTCGAGGAGAGCTATA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTCGAAACAATAGAGT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk048",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTCGAGGTCCATGAAC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTCGAGGAGAGCTATA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk049",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 50,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTCGGAGTCACGCGGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTCGAGGTCCATGAAC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk050",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 51,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTGCTGTCACTCAGGC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTCGGAGTCACGCGGT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk051",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 52,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTGTGCTTCTTTAGTC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTGCTGTCACTCAGGC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk052",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 53,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTTAACTAGGTCGGAT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTGTGCTTCTTTAGTC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk053",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 54,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTTAGGACATACGCCG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTTAACTAGGTCGGAT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk054",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 55,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTTGGCTAGATCTGAA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTTAGGACATACGCCG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk055",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 56,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTTGGCTTCCGGGTGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTTGGCTAGATCTGAA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk056",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 57,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GAAACTCCAGCCTATA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTTGGCTTCCGGGTGT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk057",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 58,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GAACATCCAGCTTCGG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GAAACTCCAGCCTATA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk058",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 59,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GACGTGCGTGTGAAAT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GAACATCCAGCTTCGG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk059",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 60,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GACTAACCACATTAGC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GACGTGCGTGTGAAAT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk060",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 61,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GACTACAAGCCACGTC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GACTAACCACATTAGC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk061",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 62,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GACTGCGAGGTGTTAA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GACTACAAGCCACGTC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk062",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 63,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GAGCAGATCAGGATCT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GACTGCGAGGTGTTAA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk063",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 64,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GATCTAGCAATAGAGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GAGCAGATCAGGATCT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk064",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 65,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GATTCAGTCGCTTGTC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GATCTAGCAATAGAGT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk065",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 66,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GCCTCTACAGCAGTTT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GATTCAGTCGCTTGTC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk066",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 67,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GCGCAACAGGCATGGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GCCTCTACAGCAGTTT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk067",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 68,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GCGCGATAGCGATAGC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GCGCAACAGGCATGGT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk068",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 69,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GCGGGTTTCTTGCCGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GCGCGATAGCGATAGC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk069",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 70,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GCTCTGTAGGCTATCT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GCGGGTTTCTTGCCGT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk070",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 71,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GGAATAAAGAGACGAA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GCTCTGTAGGCTATCT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk071",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 72,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GGACATTAGAGACGAA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GGAATAAAGAGACGAA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk072",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 73,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GGACGTCAGTACTTGC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GGACATTAGAGACGAA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk073",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 74,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GGATGTTTCTGGAGCC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GGACGTCAGTACTTGC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk074",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 75,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GGCAATTAGGCCGAAT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GGATGTTTCTGGAGCC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk075",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 76,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GGCGACTAGACAATAC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GGCAATTAGGCCGAAT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk076",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 77,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GGGTCTGTCGAATGCT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GGCGACTAGACAATAC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk077",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 78,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GGGTTGCGTATAGGTA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GGGTCTGTCGAATGCT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk078",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 79,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GGTATTGCATCCGCGA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GGGTTGCGTATAGGTA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk079",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 80,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GTCACGGAGACGCAAC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GGTATTGCATCCGCGA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk080",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 81,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GTCATTTTCAACCAAC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GTCACGGAGACGCAAC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk081",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 82,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GTCGGGTGTGATGTCT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GTCATTTTCAACCAAC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk082",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 83,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GTCGTAACACGGATAG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GTCGGGTGTGATGTCT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk083",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 84,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GTCTTCGAGAAGAAGC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GTCGTAACACGGATAG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk084",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 85,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GTGTTAGAGGCTAGCA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GTCTTCGAGAAGAAGC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk085",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 86,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TAAGTGCTCGTTACAG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GTGTTAGAGGCTAGCA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk086",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 87,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TACAGTGTCGCCAAAT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TAAGTGCTCGTTACAG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk087",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 88,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TACCTATGTAGAGGAA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TACAGTGTCGCCAAAT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk088",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 89,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TACCTTACACCGGAAA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TACCTATGTAGAGGAA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk089",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 90,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TACTTACCATGGATGG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TACCTTACACCGGAAA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk090",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 91,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TATCTCATCAACGGGA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TACTTACCATGGATGG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk091",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 92,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TATGCCCCACTGCCAG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TATCTCATCAACGGGA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk092",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 93,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TATTACCGTCAACATC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TATGCCCCACTGCCAG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk093",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 94,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TCAATCTCAGCAGTTT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TATTACCGTCAACATC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk094",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 95,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TCGTACCTCTTACCTA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TCAATCTCAGCAGTTT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk095",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 96,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TCTATTGCACGTGAGA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TCGTACCTCTTACCTA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk096",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 97,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TCTCATAAGCTAACTC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TCTATTGCACGTGAGA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk097",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 98,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TCTCATATCGCAAACT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TCTCATAAGCTAACTC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk098",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 99,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TGCCCTAGTGCCTGTG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TCTCATATCGCAAACT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk099",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 100,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TGCGTGGAGGGTCTCC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TGCCCTAGTGCCTGTG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk100",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 101,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TGCTACCCAAGCCGCT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TGCGTGGAGGGTCTCC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk101",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 102,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TGCTACCTCCAAACAC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TGCTACCCAAGCCGCT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk102",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 103,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TGCTGCTCAACACGCC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TGCTACCTCCAAACAC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk103",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 104,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TTCCCAGTCATCGATG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TGCTGCTCAACACGCC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk104",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 105,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TTCGAAGCATATGAGA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TTCCCAGTCATCGATG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk105",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 106,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TTCGGTCAGAGCTTCT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TTCGAAGCATATGAGA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk106",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 107,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": null,
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TTCGGTCAGAGCTTCT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk107",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_well",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "valid_uncorrected",
                            "type": "shard[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "valid_corrected",
                            "type": "shard[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "raw_barcode_counts",
                            "type": "bcc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/barcode_counts.bcc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "corrected_barcode_counts",
                            "type": "bcc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/join-ucc6a7a72ab/files/correct_barcode_counts.bcc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "paired_end",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "bc_sorted_rna_reads",
                            "type": "bincode.lz4[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk000-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk001-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk002-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk003-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk004-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk005-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk006-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk007-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk008-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk009-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk010-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk011-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk012-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk013-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk014-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk015-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk016-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk017-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk018-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk019-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk020-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk021-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk022-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk023-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk024-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk025-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk026-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk027-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk028-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk029-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk030-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk031-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk032-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk033-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk034-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk035-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk036-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk037-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk038-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk039-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk040-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk041-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk042-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk043-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk044-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk045-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk046-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk047-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk048-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk049-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk050-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk051-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk052-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk053-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk054-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk055-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk056-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk057-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk058-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk059-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk060-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk061-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk062-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk063-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk064-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk065-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk066-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk067-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk068-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk069-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk070-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk071-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk072-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk073-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk074-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk075-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk076-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk077-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk078-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk079-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk080-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk081-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk082-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk083-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk084-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk085-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk086-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk087-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk088-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk089-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk090-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk091-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk092-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk093-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk094-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk095-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk096-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk097-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk098-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk099-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk100-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk101-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk102-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk103-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk104-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk105-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk106-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk107-ucc6a7a72b0/files/chunk_bc_sorted_rna_reads.bincode.lz4"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "barcodes",
                            "type": "json[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk000-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk001-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk002-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk003-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk004-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk005-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk006-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk007-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk008-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk009-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk010-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk011-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk012-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk013-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk014-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk015-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk016-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk017-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk018-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk019-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk020-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk021-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk022-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk023-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk024-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk025-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk026-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk027-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk028-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk029-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk030-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk031-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk032-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk033-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk034-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk035-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk036-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk037-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk038-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk039-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk040-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk041-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk042-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk043-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk044-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk045-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk046-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk047-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk048-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk049-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk050-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk051-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk052-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk053-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk054-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk055-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk056-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk057-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk058-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk059-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk060-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk061-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk062-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk063-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk064-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk065-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk066-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk067-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk068-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk069-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk070-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk071-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk072-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk073-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk074-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk075-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk076-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk077-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk078-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk079-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk080-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk081-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk082-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk083-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk084-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk085-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk086-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk087-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk088-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk089-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk090-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk091-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk092-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk093-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk094-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk095-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk096-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk097-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk098-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk099-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk100-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk101-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk102-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk103-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk104-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk105-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk106-ucc6a7a72b0/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk107-ucc6a7a72b0/files/barcode_shard.json"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "raw_barcode_counts_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72b0/files/raw_barcode_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "corrected_barcode_counts_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72b0/files/corrected_barcode_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "n50_n50_rpu",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": 288,
                            "waiting": false
                        },
                        {
                            "id": "processed_read_pairs",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": 20716612,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian rust_bridge"
    },
    {
        "name": "VDJ_T_GEM_WELL_PROCESSOR",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "chemistry_type",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "SCVDJ-R2",
                            "waiting": false
                        },
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "TR",
                            "waiting": false
                        },
                        {
                            "id": "inputs",
                            "type": "VdjAssemblerInputs",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_TCR",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "VDJ",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_TCR"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "custom_chemistry_def": null,
                                "r1_length": null,
                                "r2_length": null,
                                "initial_reads": null,
                                "subsample_rate": null,
                                "denovo": false,
                                "force_cells": null,
                                "inner_enrichment_primers": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "gen_inputs",
                            "type": "VdjGenInputs",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": {
                                "reference_path": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                                "vdj_reference_path": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0"
                            },
                            "waiting": false
                        },
                        {
                            "id": "gex_filtered_barcodes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "is_non_targeted_gex",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "setup_chunks_outs",
                            "type": "MULTI_SETUP_CHUNKS",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "barcode_whitelist": "737K-august-2016",
                                "chemistry_def": {
                                    "barcode": [
                                        {
                                            "kind": "gel_bead",
                                            "length": 16,
                                            "offset": 0,
                                            "read_type": "R1",
                                            "whitelist": "737K-august-2016"
                                        }
                                    ],
                                    "description": "Single Cell V(D)J R2-only",
                                    "endedness": "five_prime",
                                    "name": "SCVDJ-R2",
                                    "rna": {
                                        "length": null,
                                        "min_length": null,
                                        "offset": 0,
                                        "read_type": "R2"
                                    },
                                    "rna2": null,
                                    "strandedness": "-",
                                    "umi": {
                                        "length": 10,
                                        "min_length": null,
                                        "offset": 16,
                                        "read_type": "R1"
                                    }
                                },
                                "chunks": [
                                    {
                                        "chemistry": {
                                            "barcode": [
                                                {
                                                    "kind": "gel_bead",
                                                    "length": 16,
                                                    "offset": 0,
                                                    "read_type": "R1",
                                                    "whitelist": "737K-august-2016"
                                                }
                                            ],
                                            "description": "Single Cell V(D)J R2-only",
                                            "endedness": "five_prime",
                                            "name": "SCVDJ-R2",
                                            "rna": {
                                                "length": null,
                                                "min_length": null,
                                                "offset": 0,
                                                "read_type": "R2"
                                            },
                                            "rna2": null,
                                            "strandedness": "-",
                                            "umi": {
                                                "length": 10,
                                                "min_length": null,
                                                "offset": 16,
                                                "read_type": "R1"
                                            }
                                        },
                                        "chunk_id": 0,
                                        "fastq_id": "dimitri_TCR",
                                        "fastqs": {
                                            "i1": null,
                                            "i2": null,
                                            "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_TCR_S1_L001_R1_001.fastq.gz",
                                            "r1_interleaved": false,
                                            "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_TCR_S1_L001_R2_001.fastq.gz"
                                        },
                                        "gem_group": 1,
                                        "library_id": 0,
                                        "library_type": "VDJ",
                                        "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                        "read_lengths": {},
                                        "subsample_rate": null
                                    }
                                ]
                            },
                            "waiting": false
                        },
                        {
                            "id": "assembler_outs",
                            "type": "SC_VDJ_CONTIG_ASSEMBLER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "assemblable_reads_per_bc": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/assemblable_reads_per_bc.arp.bincode",
                                "barcode_support": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/barcode_support.csv",
                                "barcodes_in_chunks": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk00-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk01-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk02-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk03-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk04-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk05-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk06-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk07-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk08-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk09-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk10-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk11-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk12-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk13-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk14-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk15-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk16-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk17-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk18-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk19-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk20-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk21-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk22-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk23-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk24-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk25-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk26-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk27-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk28-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk29-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk30-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk31-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk32-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk33-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk34-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk35-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk36-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk37-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk38-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk39-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk40-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk41-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk42-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk43-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk44-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk45-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk46-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk47-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk48-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk49-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk50-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk51-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk52-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk53-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk54-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk55-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk56-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk57-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk58-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk59-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk60-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk61-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk62-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk63-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk64-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk65-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk66-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk67-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk68-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk69-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk70-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk71-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk72-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk73-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk74-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk75-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk76-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk77-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk78-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk79-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk80-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk81-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk82-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk83-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk84-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk85-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk86-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk87-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk88-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk89-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk90-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk91-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk92-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk93-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk94-ucc6a7a72e6/files/barcodes_in_chunk.json"
                                ],
                                "contig_annotations": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                                "contig_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_bam.bam",
                                "contig_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_bam.bam.bai",
                                "corrected_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72c2/files/corrected_barcode_counts.json",
                                "gem_groups": [
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1,
                                    1
                                ],
                                "n50_n50_rpu": 2159,
                                "processed_read_pairs": 46574590,
                                "raw_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72c2/files/raw_barcode_counts.json",
                                "read_shards": {
                                    "corrected_reads": [
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                                    ],
                                    "invalid_reads": [
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/invalid_shard.shard",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/invalid_shard.shard"
                                    ],
                                    "valid_reads": [
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard"
                                    ]
                                },
                                "report": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/report.txt",
                                "sequencing_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                                "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/chnk0-ucc6a7a7409/files/summary.json",
                                "summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/summary_tsv.tsv",
                                "total_read_pairs": 58185432,
                                "umi_summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/umi_summary_tsv.tsv",
                                "unmapped_sample_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/unmapped_sample_fastq.fastq"
                            },
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "MULTI_SETUP_CHUNKS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/MULTI_SETUP_CHUNKS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/MULTI_SETUP_CHUNKS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/MULTI_SETUP_CHUNKS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/MULTI_SETUP_CHUNKS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/MULTI_SETUP_CHUNKS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/MULTI_SETUP_CHUNKS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "chemistry_name",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "SCVDJ-R2",
                            "waiting": false
                        },
                        {
                            "id": "default_library_type",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "VDJ",
                            "waiting": false
                        },
                        {
                            "id": "sample_def",
                            "type": "map[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "fastq_id": "dimitri_TCR",
                                    "fastq_mode": "ILMN_BCL2FASTQ",
                                    "gem_group": 1,
                                    "lanes": null,
                                    "library_type": "VDJ",
                                    "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                    "sample_indices": null,
                                    "sample_names": [
                                        "dimitri_TCR"
                                    ],
                                    "subsample_rate": null,
                                    "target_set": null,
                                    "target_set_name": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "custom_chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "chunks",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": [
                                {
                                    "chemistry": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell V(D)J R2-only",
                                        "endedness": "five_prime",
                                        "name": "SCVDJ-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunk_id": 0,
                                    "fastq_id": "dimitri_TCR",
                                    "fastqs": {
                                        "i1": null,
                                        "i2": null,
                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_TCR_S1_L001_R1_001.fastq.gz",
                                        "r1_interleaved": false,
                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_TCR_S1_L001_R2_001.fastq.gz"
                                    },
                                    "gem_group": 1,
                                    "library_id": 0,
                                    "library_type": "VDJ",
                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                    "read_lengths": {},
                                    "subsample_rate": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": {
                                "barcode": [
                                    {
                                        "kind": "gel_bead",
                                        "length": 16,
                                        "offset": 0,
                                        "read_type": "R1",
                                        "whitelist": "737K-august-2016"
                                    }
                                ],
                                "description": "Single Cell V(D)J R2-only",
                                "endedness": "five_prime",
                                "name": "SCVDJ-R2",
                                "rna": {
                                    "length": null,
                                    "min_length": null,
                                    "offset": 0,
                                    "read_type": "R2"
                                },
                                "rna2": null,
                                "strandedness": "-",
                                "umi": {
                                    "length": 10,
                                    "min_length": null,
                                    "offset": 16,
                                    "read_type": "R1"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": "737K-august-2016",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian setup_chunks"
    },
    {
        "name": "SC_VDJ_CONTIG_ASSEMBLER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_well",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": {
                                "barcode": [
                                    {
                                        "kind": "gel_bead",
                                        "length": 16,
                                        "offset": 0,
                                        "read_type": "R1",
                                        "whitelist": "737K-august-2016"
                                    }
                                ],
                                "description": "Single Cell V(D)J R2-only",
                                "endedness": "five_prime",
                                "name": "SCVDJ-R2",
                                "rna": {
                                    "length": null,
                                    "min_length": null,
                                    "offset": 0,
                                    "read_type": "R2"
                                },
                                "rna2": null,
                                "strandedness": "-",
                                "umi": {
                                    "length": 10,
                                    "min_length": null,
                                    "offset": 16,
                                    "read_type": "R1"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "chunks",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": [
                                {
                                    "chemistry": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell V(D)J R2-only",
                                        "endedness": "five_prime",
                                        "name": "SCVDJ-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunk_id": 0,
                                    "fastq_id": "dimitri_TCR",
                                    "fastqs": {
                                        "i1": null,
                                        "i2": null,
                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_TCR_S1_L001_R1_001.fastq.gz",
                                        "r1_interleaved": false,
                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_TCR_S1_L001_R2_001.fastq.gz"
                                    },
                                    "gem_group": 1,
                                    "library_id": 0,
                                    "library_type": "VDJ",
                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                    "read_lengths": {},
                                    "subsample_rate": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "inner_primers",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "vdj_reference_folder",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
                            "waiting": false
                        },
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "TR",
                            "waiting": false
                        },
                        {
                            "id": "gex_filtered_barcodes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "is_non_targeted_gex",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "initial_reads",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "subsample_rate",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "denovo",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/chnk0-ucc6a7a7409/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "read_shards",
                            "type": "ReadShards",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "corrected_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                                ],
                                "invalid_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/invalid_shard.shard",
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/invalid_shard.shard"
                                ],
                                "valid_reads": [
                                    "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard"
                                ]
                            },
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "raw_barcode_counts",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72c2/files/raw_barcode_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "corrected_barcode_counts",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72c2/files/corrected_barcode_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "n50_n50_rpu",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": 2159,
                            "waiting": false
                        },
                        {
                            "id": "processed_read_pairs",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": 46574590,
                            "waiting": false
                        },
                        {
                            "id": "contig_bam",
                            "type": "bam",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_bam.bam",
                            "waiting": false
                        },
                        {
                            "id": "contig_bam_bai",
                            "type": "bam.bai",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_bam.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "summary_tsv",
                            "type": "tsv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/summary_tsv.tsv",
                            "waiting": false
                        },
                        {
                            "id": "umi_summary_tsv",
                            "type": "tsv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/umi_summary_tsv.tsv",
                            "waiting": false
                        },
                        {
                            "id": "contig_annotations",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "barcode_support",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/barcode_support.csv",
                            "waiting": false
                        },
                        {
                            "id": "barcodes_in_chunks",
                            "type": "json[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk00-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk01-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk02-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk03-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk04-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk05-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk06-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk07-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk08-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk09-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk10-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk11-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk12-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk13-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk14-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk15-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk16-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk17-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk18-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk19-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk20-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk21-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk22-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk23-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk24-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk25-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk26-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk27-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk28-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk29-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk30-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk31-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk32-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk33-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk34-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk35-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk36-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk37-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk38-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk39-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk40-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk41-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk42-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk43-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk44-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk45-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk46-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk47-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk48-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk49-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk50-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk51-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk52-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk53-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk54-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk55-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk56-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk57-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk58-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk59-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk60-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk61-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk62-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk63-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk64-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk65-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk66-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk67-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk68-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk69-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk70-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk71-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk72-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk73-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk74-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk75-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk76-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk77-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk78-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk79-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk80-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk81-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk82-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk83-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk84-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk85-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk86-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk87-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk88-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk89-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk90-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk91-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk92-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk93-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk94-ucc6a7a72e6/files/barcodes_in_chunk.json"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "unmapped_sample_fastq",
                            "type": "fastq",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/unmapped_sample_fastq.fastq",
                            "waiting": false
                        },
                        {
                            "id": "report",
                            "type": "txt",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/report.txt",
                            "waiting": false
                        },
                        {
                            "id": "total_read_pairs",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": 58185432,
                            "waiting": false
                        },
                        {
                            "id": "assemblable_reads_per_bc",
                            "type": "arp.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/assemblable_reads_per_bc.arp.bincode",
                            "waiting": false
                        },
                        {
                            "id": "sequencing_metrics",
                            "type": "smf.json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "ASSEMBLE_VDJ",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 4,
                    "__mem_gb": 6,
                    "__vmem_gb": 9
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 0,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk00-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 1,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk01-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 2,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk02-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 3,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk03-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 4,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk04-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 5,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk05-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 6,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk06-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 7,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk07-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 8,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk08-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 9,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk09-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 10,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk10-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 11,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk11-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 12,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk12-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 13,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk13-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 14,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk14-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 15,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk15-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 16,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk16-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 17,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk17-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 18,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk18-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 19,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk19-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 20,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk20-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 21,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk21-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 22,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk22-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 23,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk23-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 24,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk24-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 25,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk25-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 26,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk26-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 27,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk27-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 28,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk28-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 29,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk29-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 30,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk30-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 31,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk31-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 32,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk32-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 33,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk33-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 34,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk34-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 35,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk35-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 36,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk36-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 37,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk37-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 38,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk38-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 39,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk39-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 40,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk40-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 41,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk41-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 42,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk42-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 43,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk43-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 44,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk44-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 45,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk45-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 46,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk46-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 47,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk47-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk47",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 48,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk48-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk48",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 49,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk49-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk49",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 50,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 50,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk50-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk50",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 51,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 51,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk51-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk51",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 52,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 52,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk52-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk52",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 53,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 53,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk53-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk53",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 54,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 54,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk54-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk54",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 55,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 55,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk55-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk55",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 56,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 56,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk56-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk56",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 57,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 57,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk57-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk57",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 58,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 58,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk58-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk58",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 59,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 59,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk59-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk59",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 60,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 60,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk60-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk60",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 61,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 61,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk61-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk61",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 62,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 62,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk62-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk62",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 63,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 63,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk63-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk63",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 64,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 64,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk64-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk64",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 65,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 65,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk65-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk65",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 66,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 66,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk66-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk66",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 67,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 67,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk67-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk67",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 68,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 68,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk68-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk68",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 69,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 69,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk69-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk69",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 70,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 70,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk70-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk70",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 71,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 71,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk71-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk71",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 72,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 72,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk72-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk72",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 73,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 73,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk73-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk73",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 74,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 74,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk74-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk74",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 75,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 75,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk75-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk75",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 76,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 76,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk76-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk76",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 77,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 77,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk77-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk77",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 78,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 78,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk78-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk78",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 79,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 79,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk79-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk79",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 80,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 80,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk80-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk80",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 81,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 81,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk81-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk81",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 82,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 82,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk82-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk82",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 83,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 83,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk83-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk83",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 84,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 84,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk84-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk84",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 85,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 85,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk85-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk85",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 86,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 86,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk86-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk86",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 87,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 87,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk87-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk87",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 88,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 88,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk88-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk88",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 89,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 89,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk89-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk89",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 90,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 90,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk90-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk90",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 91,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 91,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk91-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk91",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 92,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 92,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk92-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk92",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 93,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 93,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk93-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk93",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 94,
                        "chunkDef": {
                            "__mem_gb": 2,
                            "__threads": 1,
                            "__vmem_gb": 5,
                            "chunk_id": 94,
                            "chunk_rna_reads": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk94-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                            "perf_track": false
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk94",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "bc_sorted_rna_reads",
                            "type": "bincode.lz4[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk00-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk01-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk02-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk03-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk04-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk05-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk06-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk07-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk08-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk09-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk10-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk11-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk12-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk13-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk14-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk15-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk16-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk17-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk18-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk19-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk20-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk21-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk22-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk23-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk24-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk25-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk26-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk27-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk28-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk29-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk30-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk31-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk32-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk33-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk34-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk35-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk36-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk37-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk38-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk39-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk40-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk41-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk42-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk43-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk44-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk45-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk46-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk47-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk48-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk49-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk50-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk51-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk52-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk53-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk54-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk55-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk56-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk57-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk58-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk59-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk60-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk61-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk62-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk63-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk64-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk65-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk66-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk67-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk68-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk69-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk70-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk71-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk72-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk73-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk74-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk75-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk76-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk77-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk78-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk79-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk80-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk81-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk82-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk83-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk84-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk85-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk86-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk87-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk88-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk89-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk90-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk91-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk92-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk93-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk94-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "paired_end",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
                            "waiting": false
                        },
                        {
                            "id": "n50_n50_rpu",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": 2159,
                            "waiting": false
                        },
                        {
                            "id": "npairs",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": 46574590,
                            "waiting": false
                        },
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "TR",
                            "waiting": false
                        },
                        {
                            "id": "denovo",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "inner_enrichment_primers",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "total_read_pairs",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": 58185432,
                            "waiting": false
                        },
                        {
                            "id": "corrected_bc_counts",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72c2/files/corrected_barcode_counts.json",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "contig_bam",
                            "type": "bam",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_bam.bam",
                            "waiting": false
                        },
                        {
                            "id": "contig_bam_bai",
                            "type": "bam.bai",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_bam.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "summary_tsv",
                            "type": "tsv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/summary_tsv.tsv",
                            "waiting": false
                        },
                        {
                            "id": "umi_summary_tsv",
                            "type": "tsv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/umi_summary_tsv.tsv",
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/metrics_summary_json.json",
                            "waiting": false
                        },
                        {
                            "id": "contig_annotations",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "barcode_support",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/barcode_support.csv",
                            "waiting": false
                        },
                        {
                            "id": "barcodes_in_chunks",
                            "type": "json[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk00-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk01-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk02-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk03-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk04-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk05-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk06-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk07-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk08-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk09-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk10-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk11-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk12-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk13-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk14-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk15-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk16-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk17-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk18-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk19-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk20-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk21-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk22-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk23-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk24-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk25-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk26-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk27-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk28-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk29-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk30-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk31-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk32-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk33-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk34-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk35-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk36-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk37-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk38-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk39-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk40-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk41-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk42-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk43-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk44-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk45-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk46-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk47-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk48-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk49-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk50-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk51-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk52-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk53-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk54-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk55-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk56-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk57-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk58-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk59-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk60-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk61-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk62-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk63-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk64-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk65-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk66-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk67-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk68-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk69-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk70-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk71-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk72-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk73-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk74-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk75-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk76-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk77-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk78-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk79-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk80-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk81-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk82-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk83-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk84-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk85-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk86-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk87-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk88-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk89-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk90-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk91-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk92-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk93-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk94-ucc6a7a72e6/files/barcodes_in_chunk.json"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "assemblable_reads_per_bc",
                            "type": "arp.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/assemblable_reads_per_bc.arp.bincode",
                            "waiting": false
                        },
                        {
                            "id": "align_info",
                            "type": "txt",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/align_info.txt",
                            "waiting": false
                        },
                        {
                            "id": "unmapped_sample_fastq",
                            "type": "fastq",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/unmapped_sample_fastq.fastq",
                            "waiting": false
                        },
                        {
                            "id": "report",
                            "type": "txt",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/report.txt",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian assembly"
    },
    {
        "name": "BARCODE_CORRECTION",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 4,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ACATCAGGCAGCTCCA",
                                    "valid": false
                                },
                                "start": null
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ACTGCTCCACGGGAGG",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ACATCAGGCAGCTCCA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AGGCCACCACCATAGG",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ACTGCTCCACGGGAGG",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ATCACGTTCTTACCTT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AGGCCACCACCATAGG",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ATTGGTGTTTATTGTT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ATCACGTTCTTACCTT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CAGCCGAGTTCCTTTT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ATTGGTGTTTATTGTT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CCATGTCACCTTCAAG",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CAGCCGAGTTCCTTTT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CCTCTGACTCTCCTCT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CCATGTCACCTTCAAG",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CGGACTGGACCAGTTA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CCTCTGACTCTCCTCT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTAGCTAATGCTAATT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CGGACTGGACCAGTTA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTCTGCTGCTATAACA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTAGCTAATGCTAATT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTGTTTAGATTACAGA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTCTGCTGCTATAACA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GACCTGCATCCGCAAA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTGTTTAGATTACAGA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GCAACTTCAACACGTG",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GACCTGCATCCGCAAA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GCTGCATACGAAACCC",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GCAACTTCAACACGTG",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GGCACTGTCCCCGGAG",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GCTGCATACGAAACCC",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GGTGCGGAGTGCCCTT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GGCACTGTCCCCGGAG",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GTCTCACGACGGTCTA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GGTGCGGAGTGCCCTT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TACACCTAGATACACA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GTCTCACGACGGTCTA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TCATTTGAATGCCTGT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TACACCTAGATACACA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TGACTGCCTTCCAGAT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TCATTTGAATGCCTGT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TGCTGCTATGAAGAAA",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TGACTGCCTTCCAGAT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TTATGCTTTAGGCGAT",
                                    "valid": false
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TGCTGCTATGAAGAAA",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7,
                            "range": {
                                "end": null,
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TTATGCTTTAGGCGAT",
                                    "valid": false
                                }
                            }
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_well",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "barcode_counts",
                            "type": "bcc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/barcode_counts.bcc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "barcode_segment_counts",
                            "type": "bsc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/barcode_segment_counts.bsc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": {
                                "barcode": [
                                    {
                                        "kind": "gel_bead",
                                        "length": 16,
                                        "offset": 0,
                                        "read_type": "R1",
                                        "whitelist": "737K-august-2016"
                                    }
                                ],
                                "description": "Single Cell V(D)J R2-only",
                                "endedness": "five_prime",
                                "name": "SCVDJ-R2",
                                "rna": {
                                    "length": null,
                                    "min_length": null,
                                    "offset": 0,
                                    "read_type": "R2"
                                },
                                "rna2": null,
                                "strandedness": "-",
                                "umi": {
                                    "length": 10,
                                    "min_length": null,
                                    "offset": 16,
                                    "read_type": "R1"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "invalid_uncorrected",
                            "type": "shard[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/invalid.shard"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "valid_read_metrics",
                            "type": "bcm.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/bc_correct_summary.bcm.bincode",
                            "waiting": false
                        },
                        {
                            "id": "libraries_to_translate",
                            "type": "string[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "valid_corrected",
                            "type": "shard[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "invalid",
                            "type": "shard[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/invalid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/invalid_shard.shard"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/join-ucc6a7a72b9/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "corrected_barcode_counts",
                            "type": "bcc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/join-ucc6a7a72b9/files/correct_barcode_counts.bcc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "total_barcode_counts",
                            "type": "tbcc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/join-ucc6a7a72b9/files/total_barcode_counts.tbcc.bincode",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian barcode_correction"
    },
    {
        "name": "HANDLE_GEX_CELLS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "asm_contig_annotations",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "is_non_targeted_gex",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "contig_annotations",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian handle_gex_cells"
    },
    {
        "name": "MAKE_SHARD",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 4,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 2,
                            "__vmem_gb": 9,
                            "chunk_id": 0,
                            "feature_reference": null
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_well",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_def",
                            "type": "ChemistryDef",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": {
                                "barcode": [
                                    {
                                        "kind": "gel_bead",
                                        "length": 16,
                                        "offset": 0,
                                        "read_type": "R1",
                                        "whitelist": "737K-august-2016"
                                    }
                                ],
                                "description": "Single Cell V(D)J R2-only",
                                "endedness": "five_prime",
                                "name": "SCVDJ-R2",
                                "rna": {
                                    "length": null,
                                    "min_length": null,
                                    "offset": 0,
                                    "read_type": "R2"
                                },
                                "rna2": null,
                                "strandedness": "-",
                                "umi": {
                                    "length": 10,
                                    "min_length": null,
                                    "offset": 16,
                                    "read_type": "R1"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "read_chunks",
                            "type": "map[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                            "matchedFork": null,
                            "value": [
                                {
                                    "chemistry": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell V(D)J R2-only",
                                        "endedness": "five_prime",
                                        "name": "SCVDJ-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunk_id": 0,
                                    "fastq_id": "dimitri_TCR",
                                    "fastqs": {
                                        "i1": null,
                                        "i2": null,
                                        "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_TCR_S1_L001_R1_001.fastq.gz",
                                        "r1_interleaved": false,
                                        "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_TCR_S1_L001_R2_001.fastq.gz"
                                    },
                                    "gem_group": 1,
                                    "library_id": 0,
                                    "library_type": "VDJ",
                                    "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                    "read_lengths": {},
                                    "subsample_rate": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "r1_length",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "r2_length",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "subsample_rate",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "initial_read_pairs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "libraries_to_translate",
                            "type": "string[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [],
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_features",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_set",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_set_name",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference_path",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "write_bc_counts_json",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "valid",
                            "type": "shard[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "invalid",
                            "type": "shard[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/invalid.shard"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "barcode_counts",
                            "type": "bcc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/barcode_counts.bcc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "barcode_segment_counts",
                            "type": "bsc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/barcode_segment_counts.bsc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "feature_counts",
                            "type": "fbc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/feature_counts.fbc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "total_read_pairs",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": 58185432,
                            "waiting": false
                        },
                        {
                            "id": "paired_end",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "frf.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "bc_correct_summary",
                            "type": "bcm.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/bc_correct_summary.bcm.bincode",
                            "waiting": false
                        },
                        {
                            "id": "sequencing_metrics",
                            "type": "smf.json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                            "waiting": false
                        },
                        {
                            "id": "bc_counts_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/bc_counts_json.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian make_shard"
    },
    {
        "name": "MERGE_METRICS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "summaries",
                            "type": "json[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/summary.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/join-ucc6a7a72b9/files/summary.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/metrics_summary_json.json"
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/chnk0-ucc6a7a7409/files/summary.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.ASSEMBLE_VDJ",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MERGE_METRICS"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian merge_metrics"
    },
    {
        "name": "RUST_BRIDGE",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AACCATGGTCATTAGC",
                                    "valid": true
                                },
                                "start": null
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk00",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AACTTTCAGACAAAGG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AACCATGGTCATTAGC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk01",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AATCCAGTCCCACTTG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AACTTTCAGACAAAGG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk02",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ACATACGCAGACACTT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AATCCAGTCCCACTTG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk03",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ACATCAGCAGTGACAG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ACATACGCAGACACTT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk04",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ACCGTAACAGTCGTGC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ACATCAGCAGTGACAG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk05",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ACGATACTCAAGATCC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ACCGTAACAGTCGTGC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk06",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ACGCAGCAGGCATGGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ACGATACTCAAGATCC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk07",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ACGGGTCCACTTACGA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ACGCAGCAGGCATGGT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk08",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 9,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ACTGATGTCACAATGC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ACGGGTCCACTTACGA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk09",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 10,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ACTGTCCTCTCTGAGA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ACTGATGTCACAATGC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk10",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 11,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AGATCTGAGGCGATAC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ACTGTCCTCTCTGAGA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk11",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 12,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AGCGTATCACGAGAGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AGATCTGAGGCGATAC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk12",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 13,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AGGCCACCACAAGCCC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AGCGTATCACGAGAGT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk13",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 14,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AGGGATGGTAAACACA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AGGCCACCACAAGCCC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk14",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 15,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "AGTCTTTTCTTCGGTC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AGGGATGGTAAACACA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk15",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 16,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ATCATCTCACATCTTT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "AGTCTTTTCTTCGGTC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk16",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 17,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ATCTACTGTGAACCTT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ATCATCTCACATCTTT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk17",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 18,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ATTATCCGTCATATCG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ATCTACTGTGAACCTT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk18",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 19,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "ATTGGACAGACTCGGA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ATTATCCGTCATATCG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk19",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 20,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CAAGAAAGTTGGGACA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "ATTGGACAGACTCGGA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk20",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 21,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CACACCTCAGCTGCTG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CAAGAAAGTTGGGACA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk21",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 22,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CACACTCAGACCTTTG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CACACCTCAGCTGCTG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk22",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 23,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CACCTTGAGCCGCCTA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CACACTCAGACCTTTG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk23",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 24,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CACCTTGGTTCCGGCA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CACCTTGAGCCGCCTA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk24",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 25,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CAGCCGATCACGCGGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CACCTTGGTTCCGGCA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk25",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 26,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CAGCTAAAGATCCGAG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CAGCCGATCACGCGGT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk26",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 27,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CATCCACCATGCAACT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CAGCTAAAGATCCGAG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk27",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 28,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CATCGAAGTGGTAACG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CATCCACCATGCAACT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk28",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 29,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CCACCTACAAGGACTG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CATCGAAGTGGTAACG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk29",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 30,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CCCATACGTTTGTGTG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CCACCTACAAGGACTG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk30",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 31,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CCCTCCTTCAGGATCT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CCCATACGTTTGTGTG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk31",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 32,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CCTAGCTTCTGAGTGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CCCTCCTTCAGGATCT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk32",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 33,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CCTTTCTTCAGCGACC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CCTAGCTTCTGAGTGT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk33",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 34,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CGAATGTCATGTTCCC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CCTTTCTTCAGCGACC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk34",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 35,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CGAGCCATCTTACCTA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CGAATGTCATGTTCCC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk35",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 36,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CGCTATCCAAACTGCT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CGAGCCATCTTACCTA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk36",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 37,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CGCTGGACATCACAAC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CGCTATCCAAACTGCT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk37",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 38,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CGGGTCACAGCTGTTA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CGCTGGACATCACAAC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk38",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 39,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CGTAGGCCAGAGTGTG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CGGGTCACAGCTGTTA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk39",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 40,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CGTTCTGGTAGAAGGA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CGTAGGCCAGAGTGTG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk40",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 41,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CGTTGGGCAATGGTCT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CGTTCTGGTAGAAGGA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk41",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 42,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTACCCAGTTACGACT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CGTTGGGCAATGGTCT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk42",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 43,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTAGAGTCACGACTCG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTACCCAGTTACGACT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk43",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 44,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTCCTAGTCTCTAAGG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTAGAGTCACGACTCG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk44",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 45,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTCGGGATCTCTTATG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTCCTAGTCTCTAAGG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk45",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 46,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTCGTCAGTGTGAATA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTCGGGATCTCTTATG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk46",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 47,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTGCCTAGTTAAGTAG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTCGTCAGTGTGAATA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk47",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 48,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTGGTCTGTATTCGTG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTGCCTAGTTAAGTAG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk48",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 49,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTTAACTTCATCGATG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTGGTCTGTATTCGTG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk49",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 50,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "CTTAGGAAGAAGGACA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTTAACTTCATCGATG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk50",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 51,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GAACATCAGGCTAGAC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "CTTAGGAAGAAGGACA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk51",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 52,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GACACGCTCCTTCAAT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GAACATCAGGCTAGAC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk52",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 53,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GACTAACAGGACAGCT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GACACGCTCCTTCAAT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk53",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 54,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GACTGCGGTCCCTTGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GACTAACAGGACAGCT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk54",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 55,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GATGAAAAGCAGACTG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GACTGCGGTCCCTTGT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk55",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 56,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GCACTCTCATGGATGG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GATGAAAAGCAGACTG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk56",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 57,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GCAGTTACAGTCACTA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GCACTCTCATGGATGG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk57",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 58,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GCCTCTAGTTGATTGC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GCAGTTACAGTCACTA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk58",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 59,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GCGAGAAGTCGCGTGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GCCTCTAGTTGATTGC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk59",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 60,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GCTGCAGTCCTTTCGG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GCGAGAAGTCGCGTGT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk60",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 61,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GGAAAGCAGGCTCTTA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GCTGCAGTCCTTTCGG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk61",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 62,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GGAACTTCAGGCTGAA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GGAAAGCAGGCTCTTA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk62",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 63,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GGAGCAATCCAGTAGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GGAACTTCAGGCTGAA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk63",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 64,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GGGAATGAGCTTTGGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GGAGCAATCCAGTAGT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk64",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 65,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GGGCACTCAACACGCC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GGGAATGAGCTTTGGT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk65",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 66,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GGGTTGCCATTTCACT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GGGCACTCAACACGCC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk66",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 67,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GTACTCCCAAACGCGA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GGGTTGCCATTTCACT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk67",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 68,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GTACTTTCACGGCCAT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GTACTCCCAAACGCGA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk68",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 69,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GTCAAGTGTGATAAAC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GTACTTTCACGGCCAT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk69",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 70,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GTCTTCGAGCTACCGC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GTCAAGTGTGATAAAC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk70",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 71,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GTGCATATCAGGTTCA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GTCTTCGAGCTACCGC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk71",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 72,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GTGTTAGAGGCTAGCA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GTGCATATCAGGTTCA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk72",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 73,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "GTGTTAGTCTAGAGTC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GTGTTAGAGGCTAGCA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk73",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 74,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TAAACCGAGCTGAACG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "GTGTTAGTCTAGAGTC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk74",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 75,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TAAGAGACAAGCCGCT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TAAACCGAGCTGAACG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk75",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 76,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TACGGATCACCAGTTA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TAAGAGACAAGCCGCT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk76",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 77,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TACTTGTCAGATCTGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TACGGATCACCAGTTA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk77",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 78,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TAGTGGTTCAGCCTAA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TACTTGTCAGATCTGT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk78",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 79,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TCACAAGTCTGTTTGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TAGTGGTTCAGCCTAA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk79",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 80,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TCAGATGCACCCATTC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TCACAAGTCTGTTTGT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk80",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 81,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TCAGCTCTCCAGTAGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TCAGATGCACCCATTC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk81",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 82,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TCATTTGTCTCCGGTT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TCAGCTCTCCAGTAGT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk82",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 83,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TCCCGATTCGCCAAAT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TCATTTGTCTCCGGTT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk83",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 84,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TCGTAGAGTGATGTGG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TCCCGATTCGCCAAAT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk84",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 85,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TCTATTGGTAAACACA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TCGTAGAGTGATGTGG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk85",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 86,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TGACGGCAGGAATGGA",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TCTATTGGTAAACACA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk86",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 87,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TGACTAGCAAAGCAAT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TGACGGCAGGAATGGA",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk87",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 88,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TGCCCTAGTGATGTGG",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TGACTAGCAAAGCAAT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk88",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 89,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TGCTACCCACCAGATT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TGCCCTAGTGATGTGG",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk89",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 90,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TGGCTGGTCTGAGTGT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TGCTACCCACCAGATT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk90",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 91,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TGGGCGTAGATGTAAC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TGGCTGGTCTGAGTGT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk91",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 92,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TTAACTCGTGTTCTTT",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TGGGCGTAGATGTAAC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk92",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 93,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": {
                                    "gem_group": 1,
                                    "sequence": "TTCTTAGCATGTTGAC",
                                    "valid": true
                                },
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TTAACTCGTGTTCTTT",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk93",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 94,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "range": {
                                "end": null,
                                "start": {
                                    "gem_group": 1,
                                    "sequence": "TTCTTAGCATGTTGAC",
                                    "valid": true
                                }
                            },
                            "valid_shards": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk94",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "gem_well",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 1,
                            "waiting": false
                        },
                        {
                            "id": "valid_uncorrected",
                            "type": "shard[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "valid_corrected",
                            "type": "shard[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "raw_barcode_counts",
                            "type": "bcc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/barcode_counts.bcc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "corrected_barcode_counts",
                            "type": "bcc.bincode",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/join-ucc6a7a72b9/files/correct_barcode_counts.bcc.bincode",
                            "waiting": false
                        },
                        {
                            "id": "paired_end",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "bc_sorted_rna_reads",
                            "type": "bincode.lz4[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk00-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk01-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk02-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk03-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk04-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk05-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk06-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk07-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk08-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk09-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk10-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk11-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk12-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk13-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk14-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk15-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk16-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk17-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk18-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk19-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk20-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk21-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk22-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk23-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk24-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk25-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk26-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk27-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk28-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk29-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk30-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk31-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk32-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk33-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk34-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk35-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk36-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk37-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk38-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk39-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk40-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk41-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk42-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk43-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk44-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk45-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk46-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk47-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk48-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk49-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk50-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk51-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk52-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk53-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk54-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk55-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk56-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk57-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk58-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk59-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk60-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk61-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk62-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk63-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk64-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk65-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk66-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk67-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk68-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk69-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk70-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk71-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk72-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk73-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk74-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk75-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk76-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk77-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk78-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk79-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk80-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk81-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk82-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk83-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk84-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk85-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk86-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk87-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk88-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk89-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk90-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk91-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk92-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk93-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk94-ucc6a7a72c2/files/chunk_bc_sorted_rna_reads.bincode.lz4"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "gem_groups",
                            "type": "int[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": [
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1,
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "barcodes",
                            "type": "json[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk00-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk01-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk02-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk03-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk04-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk05-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk06-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk07-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk08-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk09-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk10-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk11-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk12-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk13-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk14-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk15-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk16-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk17-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk18-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk19-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk20-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk21-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk22-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk23-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk24-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk25-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk26-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk27-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk28-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk29-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk30-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk31-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk32-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk33-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk34-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk35-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk36-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk37-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk38-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk39-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk40-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk41-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk42-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk43-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk44-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk45-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk46-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk47-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk48-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk49-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk50-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk51-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk52-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk53-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk54-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk55-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk56-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk57-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk58-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk59-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk60-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk61-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk62-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk63-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk64-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk65-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk66-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk67-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk68-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk69-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk70-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk71-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk72-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk73-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk74-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk75-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk76-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk77-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk78-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk79-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk80-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk81-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk82-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk83-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk84-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk85-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk86-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk87-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk88-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk89-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk90-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk91-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk92-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk93-ucc6a7a72c2/files/barcode_shard.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/chnk94-ucc6a7a72c2/files/barcode_shard.json"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "raw_barcode_counts_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72c2/files/raw_barcode_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "corrected_barcode_counts_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72c2/files/corrected_barcode_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "n50_n50_rpu",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": 2159,
                            "waiting": false
                        },
                        {
                            "id": "processed_read_pairs",
                            "type": "int",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE",
                            "matchedFork": null,
                            "value": 46574590,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.BARCODE_CORRECTION",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.RUST_BRIDGE"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian rust_bridge"
    },
    {
        "name": "MULTI_REPORTER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "multi_config_sha",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "441f739f093e36c43f57328492fe5aa9703c212f8c5a330ff0ef60c31a5f08c4",
                            "waiting": false
                        },
                        {
                            "id": "config",
                            "type": "FullPipelineConfig",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "disable_count": false,
                                "disable_multi": false,
                                "disable_multi_count": false,
                                "disable_vdj_b": false,
                                "disable_vdj_t": false,
                                "has_no_vdj_ref": false
                            },
                            "waiting": false
                        },
                        {
                            "id": "count_pipestance_type",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "SC_RNA_COUNTER_CS",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        },
                        {
                            "id": "count_gw",
                            "type": "COUNT_GEM_WELL_PROCESSOR",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "basic_counter_outs": {
                                    "aggregate_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/aggregate_barcodes.csv",
                                    "alignments": [
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/pos_sorted.asf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/pos_sorted.asf"
                                    ],
                                    "annotation_files": null,
                                    "assign_tags": {
                                        "assignment_confidence_table": null,
                                        "cells_per_tag": null,
                                        "gem_well_inferred_throughputs": null,
                                        "gem_well_throughput": null,
                                        "jibes_model_summary": null,
                                        "jibes_parameters": null,
                                        "jibes_summary_data": null,
                                        "marginal_tag_frequencies": null,
                                        "non_tag_assignments": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/CALL_TAGS_JIBES/fork0/join-ucc6a7a7cdb/files/non_tag_assignments.json",
                                        "sample_assignment_metrics": {
                                            "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/dimitri-multi_summary.json"
                                        },
                                        "sample_barcodes_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/sample_barcodes.json",
                                        "tag_assigner_pickle": null,
                                        "tag_call_metrics_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/MERGE_METRICS/fork0/chnk0-ucc6a7a7ce0/files/summary.json",
                                        "tag_calls_per_cell": null,
                                        "tag_calls_summary": null,
                                        "tag_contaminant_info": null,
                                        "tag_umi_thresholds_csv": null,
                                        "tag_umi_thresholds_json": null
                                    },
                                    "bam_header": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/join-ucc6a7a77c8/files/bam_header",
                                    "barcode_correction_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/join-ucc6a7a77c8/files/barcode_summary.csv",
                                    "barcode_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0/chnk0-ucc6a7a7c4d/files/barcode_summary.h5",
                                    "barcode_whitelist": "737K-august-2016",
                                    "bc_umi_info": [
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/bc_umi_info.bui",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/bc_umi_info.bui"
                                    ],
                                    "filtered_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                                    "filtered_gene_bc_matrices_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                                    "filtered_gene_bc_matrices_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_mex",
                                    "gem_groups": [
                                        1
                                    ],
                                    "gem_well_alignment_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS/fork0/chnk0-ucc6a7a7c4d/files/summary.json",
                                    "merged_subsampling_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/SUBSAMPLE_READS/fork0/join-ucc6a7a7cd4/files/merged_metrics.pickle",
                                    "molecule_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ccd/files/molecule_info_non_multiplexed.h5",
                                    "multi_matrices": [
                                        {
                                            "sample": "dimitri-multi",
                                            "matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                                            "matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_feature_barcode_matrix",
                                            "all_genes_matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix.h5",
                                            "all_genes_matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix",
                                            "filtered_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_barcodes.csv"
                                        }
                                    ],
                                    "multi_metrics": [
                                        {
                                            "per_barcode_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS/fork0/chnk0-ucc6a7a7cde/files/per_barcode_metrics.csv",
                                            "per_lib_type_metrics": {},
                                            "sample": "dimitri-multi",
                                            "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS/fork0/chnk0-ucc6a7a7cde/files/summary.json"
                                        }
                                    ],
                                    "multi_molecule_info": [
                                        {
                                            "h5_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ce2/files/molecule_info_dimitri-multi.h5",
                                            "sample": "dimitri-multi",
                                            "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ce2/files/dimitri-multi_summary.json"
                                        }
                                    ],
                                    "multi_pos_sorted_bam": [
                                        {
                                            "bam_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_dimitri-multi.bam",
                                            "bam_index_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_dimitri-multi.bam.bai",
                                            "sample": "dimitri-multi"
                                        },
                                        {
                                            "bam_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_unassigned.bam",
                                            "bam_index_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_unassigned.bam.bai",
                                            "sample": "unassigned"
                                        }
                                    ],
                                    "nonambient_cell_calls": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/nonambient_calls.csv",
                                    "per_barcode_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/COLLATE_METRICS/fork0/chnk0-ucc6a7a7c4d/files/per_barcode_metrics.csv",
                                    "per_barcode_metrics_shard": [
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk00-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk01-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk02-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk03-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk04-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk05-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk06-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk07-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk08-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk09-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk10-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk11-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk12-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk13-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk14-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk15-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk16-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk17-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk18-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk19-ucc6a7a77c8/files/metrics_shard.bmsf",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/ALIGN_AND_COUNT/fork0/chnk20-ucc6a7a77c8/files/metrics_shard.bmsf"
                                    ],
                                    "possorted_genome_bam": null,
                                    "possorted_genome_bam_index": null,
                                    "raw_gene_bc_matrices_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0-ucc6a7a7c4d/files/raw_feature_bc_matrix.h5",
                                    "raw_gene_bc_matrices_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_MATRIX_MARKET/fork0/chnk0-ucc6a7a7c4d/files/raw_feature_bc_matrix",
                                    "read_chunks": [
                                        {
                                            "chemistry": {
                                                "barcode": [
                                                    {
                                                        "kind": "gel_bead",
                                                        "length": 16,
                                                        "offset": 0,
                                                        "read_type": "R1",
                                                        "whitelist": "737K-august-2016"
                                                    }
                                                ],
                                                "description": "Single Cell 5' R2-only",
                                                "endedness": "five_prime",
                                                "name": "SC5P-R2",
                                                "rna": {
                                                    "length": null,
                                                    "min_length": null,
                                                    "offset": 0,
                                                    "read_type": "R2"
                                                },
                                                "rna2": null,
                                                "strandedness": "-",
                                                "umi": {
                                                    "length": 10,
                                                    "min_length": null,
                                                    "offset": 16,
                                                    "read_type": "R1"
                                                }
                                            },
                                            "chunk_id": 0,
                                            "fastq_id": "dimitri_RNA",
                                            "fastqs": {
                                                "i1": null,
                                                "i2": null,
                                                "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                                "r1_interleaved": false,
                                                "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                            },
                                            "gem_group": 1,
                                            "library_id": 0,
                                            "library_type": "Gene Expression",
                                            "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                            "read_lengths": {},
                                            "subsample_rate": null
                                        }
                                    ],
                                    "read_shards": {
                                        "corrected_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/valid_shard.shard"
                                        ],
                                        "invalid_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk24-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk25-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk26-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk27-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk28-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk29-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk30-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk31-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk32-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk33-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk34-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk35-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk36-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk37-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk38-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk39-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk40-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk41-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk42-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk43-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk44-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk45-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk46-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk47-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk48-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk49-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk50-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk51-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk52-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk53-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk54-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk55-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk56-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk57-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk58-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk59-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk60-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk61-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk62-ucc6a7a77b3/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/chnk63-ucc6a7a77b3/files/invalid_shard.shard"
                                        ],
                                        "valid_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c6/files/valid.shard"
                                        ]
                                    },
                                    "sample_assignment_metrics": {
                                        "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/dimitri-multi_summary.json"
                                    },
                                    "sample_barcodes_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/sample_barcodes.json",
                                    "sequencing_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                                    "slfe_feature_reference": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/split-ucc6a7a71c0/files/feature_reference.frf.bincode",
                                    "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MERGE_METRICS/fork0/chnk0-ucc6a7a7d61/files/summary.json",
                                    "target_set_name": null
                                },
                                "setup_chunks_outs": {
                                    "barcode_whitelist": "737K-august-2016",
                                    "chemistry_def": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell 5' R2-only",
                                        "endedness": "five_prime",
                                        "name": "SC5P-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunks": [
                                        {
                                            "chemistry": {
                                                "barcode": [
                                                    {
                                                        "kind": "gel_bead",
                                                        "length": 16,
                                                        "offset": 0,
                                                        "read_type": "R1",
                                                        "whitelist": "737K-august-2016"
                                                    }
                                                ],
                                                "description": "Single Cell 5' R2-only",
                                                "endedness": "five_prime",
                                                "name": "SC5P-R2",
                                                "rna": {
                                                    "length": null,
                                                    "min_length": null,
                                                    "offset": 0,
                                                    "read_type": "R2"
                                                },
                                                "rna2": null,
                                                "strandedness": "-",
                                                "umi": {
                                                    "length": 10,
                                                    "min_length": null,
                                                    "offset": 16,
                                                    "read_type": "R1"
                                                }
                                            },
                                            "chunk_id": 0,
                                            "fastq_id": "dimitri_RNA",
                                            "fastqs": {
                                                "i1": null,
                                                "i2": null,
                                                "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R1_001.fastq.gz",
                                                "r1_interleaved": false,
                                                "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_RNA_S1_L001_R2_001.fastq.gz"
                                            },
                                            "gem_group": 1,
                                            "library_id": 0,
                                            "library_type": "Gene Expression",
                                            "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                            "read_lengths": {},
                                            "subsample_rate": null
                                        }
                                    ]
                                },
                                "target_outs": {
                                    "bait_fasta": null,
                                    "disable_target_umi_filter": true,
                                    "disable_targeted": true,
                                    "probe_set": null,
                                    "rps_limit": null,
                                    "summary": null,
                                    "target_gene_indices": null,
                                    "target_panel": null,
                                    "target_panel_or_probe_set": null,
                                    "target_set_name": null,
                                    "targeting_method": null
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "include_introns",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "count_analyzer",
                            "type": "SC_RNA_ANALYZER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "crispr_analyzer",
                            "type": "_CRISPR_ANALYZER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "antibody_analyzer",
                            "type": "_ANTIBODY_ANALYZER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "targeted_analyzer",
                            "type": "_TARGETED_ANALYZER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
                            "waiting": false
                        },
                        {
                            "id": "vdj_t_receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "TR",
                            "waiting": false
                        },
                        {
                            "id": "vdj_t_gw",
                            "type": "VDJ_GEM_WELL_PROCESSOR",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "assembler_outs": {
                                    "assemblable_reads_per_bc": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/assemblable_reads_per_bc.arp.bincode",
                                    "barcode_support": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/barcode_support.csv",
                                    "barcodes_in_chunks": [
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk00-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk01-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk02-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk03-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk04-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk05-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk06-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk07-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk08-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk09-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk10-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk11-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk12-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk13-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk14-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk15-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk16-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk17-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk18-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk19-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk20-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk21-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk22-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk23-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk24-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk25-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk26-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk27-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk28-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk29-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk30-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk31-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk32-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk33-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk34-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk35-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk36-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk37-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk38-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk39-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk40-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk41-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk42-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk43-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk44-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk45-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk46-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk47-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk48-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk49-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk50-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk51-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk52-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk53-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk54-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk55-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk56-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk57-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk58-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk59-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk60-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk61-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk62-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk63-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk64-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk65-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk66-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk67-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk68-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk69-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk70-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk71-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk72-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk73-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk74-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk75-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk76-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk77-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk78-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk79-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk80-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk81-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk82-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk83-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk84-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk85-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk86-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk87-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk88-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk89-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk90-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk91-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk92-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk93-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk94-ucc6a7a72e6/files/barcodes_in_chunk.json"
                                    ],
                                    "contig_annotations": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                                    "contig_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_bam.bam",
                                    "contig_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_bam.bam.bai",
                                    "corrected_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72c2/files/corrected_barcode_counts.json",
                                    "gem_groups": [
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1
                                    ],
                                    "n50_n50_rpu": 2159,
                                    "processed_read_pairs": 46574590,
                                    "raw_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72c2/files/raw_barcode_counts.json",
                                    "read_shards": {
                                        "corrected_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                                        ],
                                        "invalid_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/invalid_shard.shard"
                                        ],
                                        "valid_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard"
                                        ]
                                    },
                                    "report": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/report.txt",
                                    "sequencing_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                                    "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/chnk0-ucc6a7a7409/files/summary.json",
                                    "summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/summary_tsv.tsv",
                                    "total_read_pairs": 58185432,
                                    "umi_summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/umi_summary_tsv.tsv",
                                    "unmapped_sample_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/unmapped_sample_fastq.fastq"
                                },
                                "setup_chunks_outs": {
                                    "barcode_whitelist": "737K-august-2016",
                                    "chemistry_def": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell V(D)J R2-only",
                                        "endedness": "five_prime",
                                        "name": "SCVDJ-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunks": [
                                        {
                                            "chemistry": {
                                                "barcode": [
                                                    {
                                                        "kind": "gel_bead",
                                                        "length": 16,
                                                        "offset": 0,
                                                        "read_type": "R1",
                                                        "whitelist": "737K-august-2016"
                                                    }
                                                ],
                                                "description": "Single Cell V(D)J R2-only",
                                                "endedness": "five_prime",
                                                "name": "SCVDJ-R2",
                                                "rna": {
                                                    "length": null,
                                                    "min_length": null,
                                                    "offset": 0,
                                                    "read_type": "R2"
                                                },
                                                "rna2": null,
                                                "strandedness": "-",
                                                "umi": {
                                                    "length": 10,
                                                    "min_length": null,
                                                    "offset": 16,
                                                    "read_type": "R1"
                                                }
                                            },
                                            "chunk_id": 0,
                                            "fastq_id": "dimitri_TCR",
                                            "fastqs": {
                                                "i1": null,
                                                "i2": null,
                                                "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_TCR_S1_L001_R1_001.fastq.gz",
                                                "r1_interleaved": false,
                                                "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_TCR_S1_L001_R2_001.fastq.gz"
                                            },
                                            "gem_group": 1,
                                            "library_id": 0,
                                            "library_type": "VDJ",
                                            "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                            "read_lengths": {},
                                            "subsample_rate": null
                                        }
                                    ]
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_t_clonotype",
                            "type": "SC_VDJ_CLONOTYPE_ASSIGNER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "airr_rearrangement": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0-ucc6a7a7cdd/files/airr_annotations.tsv",
                                "all_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.csv",
                                "all_contig_annotations_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.json",
                                "clonotypes_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd5/files/clonotypes.csv",
                                "concat_ref_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.bam",
                                "concat_ref_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.bam.bai",
                                "concat_ref_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.fasta",
                                "concat_ref_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.fasta.fai",
                                "consensus_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus_annotations.csv",
                                "consensus_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd7/files/consensus.bam",
                                "consensus_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd7/files/consensus.bam.bai",
                                "consensus_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus.fasta",
                                "consensus_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus.fasta.fai",
                                "disable_vloupe": false,
                                "donor_ref_fa": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/donor_ref.fa",
                                "enclone_output": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/enclone_output.pb",
                                "filtered_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_annotations.csv",
                                "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/summary.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "IG",
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_gw",
                            "type": "VDJ_GEM_WELL_PROCESSOR",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "assembler_outs": {
                                    "assemblable_reads_per_bc": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/assemblable_reads_per_bc.arp.bincode",
                                    "barcode_support": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/barcode_support.csv",
                                    "barcodes_in_chunks": [
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk000-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk001-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk002-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk003-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk004-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk005-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk006-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk007-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk008-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk009-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk010-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk011-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk012-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk013-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk014-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk015-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk016-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk017-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk018-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk019-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk020-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk021-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk022-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk023-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk024-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk025-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk026-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk027-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk028-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk029-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk030-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk031-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk032-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk033-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk034-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk035-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk036-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk037-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk038-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk039-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk040-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk041-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk042-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk043-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk044-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk045-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk046-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk047-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk048-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk049-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk050-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk051-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk052-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk053-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk054-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk055-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk056-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk057-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk058-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk059-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk060-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk061-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk062-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk063-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk064-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk065-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk066-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk067-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk068-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk069-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk070-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk071-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk072-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk073-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk074-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk075-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk076-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk077-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk078-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk079-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk080-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk081-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk082-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk083-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk084-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk085-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk086-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk087-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk088-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk089-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk090-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk091-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk092-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk093-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk094-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk095-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk096-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk097-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk098-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk099-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk100-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk101-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk102-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk103-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk104-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk105-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk106-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk107-ucc6a7a72ce/files/barcodes_in_chunk.json"
                                    ],
                                    "contig_annotations": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                                    "contig_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_bam.bam",
                                    "contig_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_bam.bam.bai",
                                    "corrected_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72b0/files/corrected_barcode_counts.json",
                                    "gem_groups": [
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1
                                    ],
                                    "n50_n50_rpu": 288,
                                    "processed_read_pairs": 20716612,
                                    "raw_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72b0/files/raw_barcode_counts.json",
                                    "read_shards": {
                                        "corrected_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                                        ],
                                        "invalid_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/invalid_shard.shard"
                                        ],
                                        "valid_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard"
                                        ]
                                    },
                                    "report": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/report.txt",
                                    "sequencing_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                                    "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/chnk0-ucc6a7a73e1/files/summary.json",
                                    "summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/summary_tsv.tsv",
                                    "total_read_pairs": 56633794,
                                    "umi_summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/umi_summary_tsv.tsv",
                                    "unmapped_sample_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/unmapped_sample_fastq.fastq"
                                },
                                "setup_chunks_outs": {
                                    "barcode_whitelist": "737K-august-2016",
                                    "chemistry_def": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell V(D)J R2-only",
                                        "endedness": "five_prime",
                                        "name": "SCVDJ-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunks": [
                                        {
                                            "chemistry": {
                                                "barcode": [
                                                    {
                                                        "kind": "gel_bead",
                                                        "length": 16,
                                                        "offset": 0,
                                                        "read_type": "R1",
                                                        "whitelist": "737K-august-2016"
                                                    }
                                                ],
                                                "description": "Single Cell V(D)J R2-only",
                                                "endedness": "five_prime",
                                                "name": "SCVDJ-R2",
                                                "rna": {
                                                    "length": null,
                                                    "min_length": null,
                                                    "offset": 0,
                                                    "read_type": "R2"
                                                },
                                                "rna2": null,
                                                "strandedness": "-",
                                                "umi": {
                                                    "length": 10,
                                                    "min_length": null,
                                                    "offset": 16,
                                                    "read_type": "R1"
                                                }
                                            },
                                            "chunk_id": 0,
                                            "fastq_id": "dimitri_BCR",
                                            "fastqs": {
                                                "i1": null,
                                                "i2": null,
                                                "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_BCR_S1_L001_R1_001.fastq.gz",
                                                "r1_interleaved": false,
                                                "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_BCR_S1_L001_R2_001.fastq.gz"
                                            },
                                            "gem_group": 1,
                                            "library_id": 0,
                                            "library_type": "VDJ",
                                            "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                            "read_lengths": {},
                                            "subsample_rate": null
                                        }
                                    ]
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_clonotype",
                            "type": "SC_VDJ_CLONOTYPE_ASSIGNER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "airr_rearrangement": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0-ucc6a7a7ce7/files/airr_annotations.tsv",
                                "all_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd8/files/all_contig_annotations.csv",
                                "all_contig_annotations_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd8/files/all_contig_annotations.json",
                                "clonotypes_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd7/files/clonotypes.csv",
                                "concat_ref_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.bam",
                                "concat_ref_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.bam.bai",
                                "concat_ref_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta",
                                "concat_ref_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta.fai",
                                "consensus_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus_annotations.csv",
                                "consensus_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd8/files/consensus.bam",
                                "consensus_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd8/files/consensus.bam.bai",
                                "consensus_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus.fasta",
                                "consensus_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus.fasta.fai",
                                "disable_vloupe": false,
                                "donor_ref_fa": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/donor_ref.fa",
                                "enclone_output": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/enclone_output.pb",
                                "filtered_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_annotations.csv",
                                "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/summary.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0/chnk0-ucc6a7a7c4d/files/barcode_summary.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "assign_tags_outs",
                            "type": "AssignTagsOuts",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "assignment_confidence_table": null,
                                "cells_per_tag": null,
                                "gem_well_inferred_throughputs": null,
                                "gem_well_throughput": null,
                                "jibes_model_summary": null,
                                "jibes_parameters": null,
                                "jibes_summary_data": null,
                                "marginal_tag_frequencies": null,
                                "non_tag_assignments": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/CALL_TAGS_JIBES/fork0/join-ucc6a7a7cdb/files/non_tag_assignments.json",
                                "sample_assignment_metrics": {
                                    "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/dimitri-multi_summary.json"
                                },
                                "sample_barcodes_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/sample_barcodes.json",
                                "tag_assigner_pickle": null,
                                "tag_call_metrics_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/MERGE_METRICS/fork0/chnk0-ucc6a7a7ce0/files/summary.json",
                                "tag_calls_per_cell": null,
                                "tag_calls_summary": null,
                                "tag_contaminant_info": null,
                                "tag_umi_thresholds_csv": null,
                                "tag_umi_thresholds_json": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "disable_library_cloupe",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "sample_cloupe",
                            "type": "map\u003ccloupe\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/CLOUPE_PREPROCESS/fork_dimitri-multi/join-ucc6a7a7db5/files/output_for_cloupe.cloupe"
                            },
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "count_summary",
                            "type": "SUMMARIZE_REPORTS",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "feature_reference": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/feature_reference.csv",
                                "metrics_summary_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/metrics_summary_csv.csv",
                                "metrics_summary_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/metrics_summary_json.json",
                                "web_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/web_summary.html",
                                "ws_data": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/ws_data.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "cloupe",
                            "type": "cloupe",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/CHOOSE_CLOUPE/fork0/chnk0-ucc6a7a7dbf/files/cloupe.cloupe",
                            "waiting": false
                        },
                        {
                            "id": "vdj_t_report",
                            "type": "VdjReport",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "annotations_bed": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/annotations_bed.bed",
                                "cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/cell_barcodes.json",
                                "contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fasta.fasta",
                                "contig_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fasta.fasta.fai",
                                "contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fastq.fastq",
                                "filtered_contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_fasta.fasta",
                                "filtered_contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_fastq.fastq",
                                "metrics_summary_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/metrics_summary_csv.csv",
                                "metrics_summary_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/metrics_summary_json.json",
                                "productive_cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/paired_cell_barcodes.json",
                                "receptor": "TR",
                                "vdj_contig_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_PROTO/fork0/chnk0-ucc6a7a7ce7/files/vdj_contig_info.pb",
                                "vloupe": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/VLOUPE_PREPROCESS/fork0/chnk0-ucc6a7a7cd5/files/output_for_vloupe.vloupe",
                                "web_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/web_summary.html",
                                "web_summary_data": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/web_summary_data.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_report",
                            "type": "VdjReport",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "annotations_bed": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/annotations_bed.bed",
                                "cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/cell_barcodes.json",
                                "contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fasta.fasta",
                                "contig_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fasta.fasta.fai",
                                "contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fastq.fastq",
                                "filtered_contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_fasta.fasta",
                                "filtered_contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_fastq.fastq",
                                "metrics_summary_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/metrics_summary_csv.csv",
                                "metrics_summary_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/metrics_summary_json.json",
                                "productive_cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/paired_cell_barcodes.json",
                                "receptor": "IG",
                                "vdj_contig_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_PROTO/fork0/chnk0-ucc6a7a7cea/files/vdj_contig_info.pb",
                                "vloupe": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/VLOUPE_PREPROCESS/fork0/chnk0-ucc6a7a7cd7/files/output_for_vloupe.vloupe",
                                "web_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/web_summary.html",
                                "web_summary_data": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/web_summary_data.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "barcode_rank_plots",
                            "type": "map\u003cjson\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "Gene Expression": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/GENERATE_LIBRARY_PLOTS/fork0/chnk0-ucc6a7a7d79/files/Gene Expression_barcode_rank_plot.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "antibody_histograms",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "jibes_biplot_histogram",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cmo_tsne_plot",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.CHOOSE_CLOUPE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.GENERATE_LIBRARY_PLOTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.SUMMARIZE_REPORTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CHOOSE_CLOUPE",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.CHOOSE_CLOUPE",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/CHOOSE_CLOUPE",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/CHOOSE_CLOUPE",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/CHOOSE_CLOUPE/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/CHOOSE_CLOUPE/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/CHOOSE_CLOUPE/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/CHOOSE_CLOUPE/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "library_cloupe",
                            "type": "cloupe",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_cloupe",
                            "type": "map\u003ccloupe\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/CLOUPE_PREPROCESS/fork_dimitri-multi/join-ucc6a7a7db5/files/output_for_cloupe.cloupe"
                            },
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "cloupe",
                            "type": "cloupe",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/CHOOSE_CLOUPE/fork0/chnk0-ucc6a7a7dbf/files/cloupe.cloupe",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.CHOOSE_CLOUPE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.CHOOSE_CLOUPE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.CHOOSE_CLOUPE"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/multi/choose_cloupe"
    },
    {
        "name": "CLOUPE_PREPROCESS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "pipestance_type",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "SC_RNA_COUNTER_CS",
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "analysis",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "metrics_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/metrics_summary_json.json",
                            "waiting": false
                        },
                        {
                            "id": "aggregation_csv",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "gem_group_index_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tissue_image_paths",
                            "type": "path[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "dark_images",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tissue_positions_list",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "fiducial_positions_list",
                            "type": "txt",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "dzi_info",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "dzi_tiles_paths",
                            "type": "path[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "scale_factors_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "no_secondary_analysis",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "loupe_map",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "product_type",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "sc",
                            "waiting": false
                        },
                        {
                            "id": "cells_per_tag",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cells_per_protospacer",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "spatial_enrichment",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "output_for_cloupe",
                            "type": "cloupe",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "gem_group_index_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.SUMMARIZE_REPORTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/cloupe/cloupe_preprocess"
    },
    {
        "name": "GENERATE_LIBRARY_PLOTS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.GENERATE_LIBRARY_PLOTS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/GENERATE_LIBRARY_PLOTS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/GENERATE_LIBRARY_PLOTS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 8,
                    "__vmem_gb": 11
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/GENERATE_LIBRARY_PLOTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/GENERATE_LIBRARY_PLOTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/GENERATE_LIBRARY_PLOTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/GENERATE_LIBRARY_PLOTS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "disable_count",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0/chnk0-ucc6a7a7c4d/files/barcode_summary.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_bc_matrices_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "tag_assigner_pickle",
                            "type": "pickle",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cells_per_tag",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "non_tag_assignments",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/CALL_TAGS_JIBES/fork0/join-ucc6a7a7cdb/files/non_tag_assignments.json",
                            "waiting": false
                        },
                        {
                            "id": "analysis",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "library_to_barcode_rank",
                            "type": "map\u003cjson\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "Gene Expression": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/GENERATE_LIBRARY_PLOTS/fork0/chnk0-ucc6a7a7d79/files/Gene Expression_barcode_rank_plot.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "jibes_biplot_histogram",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "antibody_histograms",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cmo_tsne_plot",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.GENERATE_LIBRARY_PLOTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.GENERATE_LIBRARY_PLOTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.GENERATE_LIBRARY_PLOTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.GENERATE_LIBRARY_PLOTS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/multi/generate_library_plots"
    },
    {
        "name": "SUMMARIZE_REPORTS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.SUMMARIZE_REPORTS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 8,
                    "__vmem_gb": 11
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "summaries",
                            "type": "json[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MERGE_METRICS/fork0/chnk0-ucc6a7a7d61/files/summary.json",
                                null,
                                null,
                                null,
                                null,
                                null
                            ],
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        },
                        {
                            "id": "analysis",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0/chnk0-ucc6a7a7c4d/files/barcode_summary.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_matrices_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "antibody_histograms",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "737K-august-2016",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_set_name",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "per_feature_metrics_csv",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "include_introns",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "metrics_summary_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/metrics_summary_json.json",
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary_csv",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/metrics_summary_csv.csv",
                            "waiting": false
                        },
                        {
                            "id": "web_summary",
                            "type": "html",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/web_summary.html",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/feature_reference.csv",
                            "waiting": false
                        },
                        {
                            "id": "ws_data",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/ws_data.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.SUMMARIZE_REPORTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.SUMMARIZE_REPORTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.SUMMARIZE_REPORTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.SUMMARIZE_REPORTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.SUMMARIZE_REPORTS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/counter/summarize_reports"
    },
    {
        "name": "VDJ_B_REPORTER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "IG",
                            "waiting": false
                        },
                        {
                            "id": "multi_config_sha",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "441f739f093e36c43f57328492fe5aa9703c212f8c5a330ff0ef60c31a5f08c4",
                            "waiting": false
                        },
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
                            "waiting": false
                        },
                        {
                            "id": "has_no_vdj_ref",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "vdj_gw",
                            "type": "VDJ_GEM_WELL_PROCESSOR",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "assembler_outs": {
                                    "assemblable_reads_per_bc": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/assemblable_reads_per_bc.arp.bincode",
                                    "barcode_support": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/barcode_support.csv",
                                    "barcodes_in_chunks": [
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk000-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk001-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk002-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk003-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk004-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk005-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk006-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk007-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk008-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk009-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk010-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk011-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk012-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk013-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk014-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk015-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk016-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk017-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk018-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk019-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk020-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk021-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk022-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk023-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk024-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk025-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk026-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk027-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk028-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk029-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk030-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk031-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk032-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk033-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk034-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk035-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk036-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk037-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk038-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk039-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk040-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk041-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk042-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk043-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk044-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk045-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk046-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk047-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk048-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk049-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk050-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk051-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk052-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk053-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk054-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk055-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk056-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk057-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk058-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk059-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk060-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk061-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk062-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk063-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk064-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk065-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk066-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk067-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk068-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk069-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk070-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk071-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk072-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk073-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk074-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk075-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk076-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk077-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk078-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk079-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk080-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk081-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk082-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk083-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk084-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk085-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk086-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk087-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk088-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk089-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk090-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk091-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk092-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk093-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk094-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk095-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk096-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk097-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk098-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk099-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk100-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk101-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk102-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk103-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk104-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk105-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk106-ucc6a7a72ce/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk107-ucc6a7a72ce/files/barcodes_in_chunk.json"
                                    ],
                                    "contig_annotations": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                                    "contig_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_bam.bam",
                                    "contig_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/contig_bam.bam.bai",
                                    "corrected_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72b0/files/corrected_barcode_counts.json",
                                    "gem_groups": [
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1
                                    ],
                                    "n50_n50_rpu": 288,
                                    "processed_read_pairs": 20716612,
                                    "raw_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72b0/files/raw_barcode_counts.json",
                                    "read_shards": {
                                        "corrected_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/valid_shard.shard"
                                        ],
                                        "invalid_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk0-ucc6a7a72ab/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk1-ucc6a7a72ab/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk2-ucc6a7a72ab/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk3-ucc6a7a72ab/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk4-ucc6a7a72ab/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk5-ucc6a7a72ab/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk6-ucc6a7a72ab/files/invalid_shard.shard"
                                        ],
                                        "valid_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard"
                                        ]
                                    },
                                    "report": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/report.txt",
                                    "sequencing_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                                    "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/chnk0-ucc6a7a73e1/files/summary.json",
                                    "summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/summary_tsv.tsv",
                                    "total_read_pairs": 56633794,
                                    "umi_summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/umi_summary_tsv.tsv",
                                    "unmapped_sample_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/unmapped_sample_fastq.fastq"
                                },
                                "setup_chunks_outs": {
                                    "barcode_whitelist": "737K-august-2016",
                                    "chemistry_def": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell V(D)J R2-only",
                                        "endedness": "five_prime",
                                        "name": "SCVDJ-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunks": [
                                        {
                                            "chemistry": {
                                                "barcode": [
                                                    {
                                                        "kind": "gel_bead",
                                                        "length": 16,
                                                        "offset": 0,
                                                        "read_type": "R1",
                                                        "whitelist": "737K-august-2016"
                                                    }
                                                ],
                                                "description": "Single Cell V(D)J R2-only",
                                                "endedness": "five_prime",
                                                "name": "SCVDJ-R2",
                                                "rna": {
                                                    "length": null,
                                                    "min_length": null,
                                                    "offset": 0,
                                                    "read_type": "R2"
                                                },
                                                "rna2": null,
                                                "strandedness": "-",
                                                "umi": {
                                                    "length": 10,
                                                    "min_length": null,
                                                    "offset": 16,
                                                    "read_type": "R1"
                                                }
                                            },
                                            "chunk_id": 0,
                                            "fastq_id": "dimitri_BCR",
                                            "fastqs": {
                                                "i1": null,
                                                "i2": null,
                                                "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_BCR_S1_L001_R1_001.fastq.gz",
                                                "r1_interleaved": false,
                                                "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_BCR_S1_L001_R2_001.fastq.gz"
                                            },
                                            "gem_group": 1,
                                            "library_id": 0,
                                            "library_type": "VDJ",
                                            "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                            "read_lengths": {},
                                            "subsample_rate": null
                                        }
                                    ]
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_clonotype",
                            "type": "SC_VDJ_CLONOTYPE_ASSIGNER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "airr_rearrangement": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0-ucc6a7a7ce7/files/airr_annotations.tsv",
                                "all_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd8/files/all_contig_annotations.csv",
                                "all_contig_annotations_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd8/files/all_contig_annotations.json",
                                "clonotypes_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd7/files/clonotypes.csv",
                                "concat_ref_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.bam",
                                "concat_ref_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.bam.bai",
                                "concat_ref_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta",
                                "concat_ref_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta.fai",
                                "consensus_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus_annotations.csv",
                                "consensus_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd8/files/consensus.bam",
                                "consensus_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd8/files/consensus.bam.bai",
                                "consensus_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus.fasta",
                                "consensus_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus.fasta.fai",
                                "disable_vloupe": false,
                                "donor_ref_fa": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/donor_ref.fa",
                                "enclone_output": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/enclone_output.pb",
                                "filtered_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_annotations.csv",
                                "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/summary.json"
                            },
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "report",
                            "type": "VdjReport",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "annotations_bed": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/annotations_bed.bed",
                                "cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/cell_barcodes.json",
                                "contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fasta.fasta",
                                "contig_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fasta.fasta.fai",
                                "contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fastq.fastq",
                                "filtered_contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_fasta.fasta",
                                "filtered_contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_fastq.fastq",
                                "metrics_summary_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/metrics_summary_csv.csv",
                                "metrics_summary_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/metrics_summary_json.json",
                                "productive_cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/paired_cell_barcodes.json",
                                "receptor": "IG",
                                "vdj_contig_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_PROTO/fork0/chnk0-ucc6a7a7cea/files/vdj_contig_info.pb",
                                "vloupe": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/VLOUPE_PREPROCESS/fork0/chnk0-ucc6a7a7cd7/files/output_for_vloupe.vloupe",
                                "web_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/web_summary.html",
                                "web_summary_data": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/web_summary_data.json"
                            },
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.SUMMARIZE_VDJ_REPORTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.VLOUPE_PREPROCESS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_PROTO",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "REPORT_CONTIGS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.REPORT_CONTIGS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/REPORT_CONTIGS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/REPORT_CONTIGS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/REPORT_CONTIGS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/REPORT_CONTIGS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/REPORT_CONTIGS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/REPORT_CONTIGS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
                            "waiting": false
                        },
                        {
                            "id": "cell_barcodes",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/cell_barcodes.json",
                            "waiting": false
                        },
                        {
                            "id": "contigs",
                            "type": "fasta",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fasta.fasta",
                            "waiting": false
                        },
                        {
                            "id": "annotations",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd8/files/all_contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "filter_summary",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "contig_summary",
                            "type": "tsv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/summary_tsv.tsv",
                            "waiting": false
                        },
                        {
                            "id": "umi_summary",
                            "type": "tsv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/umi_summary_tsv.tsv",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.REPORT_CONTIGS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/REPORT_CONTIGS/fork0/join-ucc6a7a7cd9/files/summary.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.REPORT_CONTIGS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.REPORT_CONTIGS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.REPORT_CONTIGS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.REPORT_CONTIGS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/vdj/report_contigs"
    },
    {
        "name": "SUMMARIZE_VDJ_REPORTS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.SUMMARIZE_VDJ_REPORTS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 2,
                    "__vmem_gb": 5
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "737K-august-2016",
                            "waiting": false
                        },
                        {
                            "id": "barcode_support",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/barcode_support.csv",
                            "waiting": false
                        },
                        {
                            "id": "summaries",
                            "type": "json[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/chnk0-ucc6a7a73e1/files/summary.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/REPORT_CONTIGS/fork0/join-ucc6a7a7cd9/files/summary.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/summary.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/summary.json"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "cell_barcodes",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/cell_barcodes.json",
                            "waiting": false
                        },
                        {
                            "id": "clonotype_summary",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd7/files/clonotypes.csv",
                            "waiting": false
                        },
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "IG",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.SUMMARIZE_VDJ_REPORTS",
                            "matchedFork": null,
                            "value": "IG",
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.SUMMARIZE_VDJ_REPORTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/metrics_summary_json.json",
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary_csv",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.SUMMARIZE_VDJ_REPORTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/metrics_summary_csv.csv",
                            "waiting": false
                        },
                        {
                            "id": "web_summary",
                            "type": "html",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.SUMMARIZE_VDJ_REPORTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/web_summary.html",
                            "waiting": false
                        },
                        {
                            "id": "web_summary_data",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.SUMMARIZE_VDJ_REPORTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/web_summary_data.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.SUMMARIZE_VDJ_REPORTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.SUMMARIZE_VDJ_REPORTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.REPORT_CONTIGS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.SUMMARIZE_VDJ_REPORTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.SUMMARIZE_VDJ_REPORTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.SUMMARIZE_VDJ_REPORTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.SUMMARIZE_VDJ_REPORTS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/vdj/summarize_reports"
    },
    {
        "name": "VLOUPE_PREPROCESS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.VLOUPE_PREPROCESS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/VLOUPE_PREPROCESS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/VLOUPE_PREPROCESS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 15,
                    "__vmem_gb": 18
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/VLOUPE_PREPROCESS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/VLOUPE_PREPROCESS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/VLOUPE_PREPROCESS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 15,
                            "__threads": 1,
                            "__vmem_gb": 18
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/VLOUPE_PREPROCESS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "pipestance_type",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "SC_VDJ_ASSEMBLER_CS",
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "enclone_output",
                            "type": "pb",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/enclone_output.pb",
                            "waiting": false
                        },
                        {
                            "id": "disable_vloupe",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "output_for_vloupe",
                            "type": "vloupe",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.VLOUPE_PREPROCESS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/VLOUPE_PREPROCESS/fork0/chnk0-ucc6a7a7cd7/files/output_for_vloupe.vloupe",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.VLOUPE_PREPROCESS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.VLOUPE_PREPROCESS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/vloupe/vloupe_preprocess"
    },
    {
        "name": "WRITE_CONTIG_OUTS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "contig_annotations",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd8/files/all_contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "total_read_pairs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 56633794,
                            "waiting": false
                        },
                        {
                            "id": "corrected_bc_counts",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72b0/files/corrected_barcode_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "assemblable_reads_per_bc",
                            "type": "arp.bincode",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72ce/files/assemblable_reads_per_bc.arp.bincode",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "contig_fastq",
                            "type": "fastq",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fastq.fastq",
                            "waiting": false
                        },
                        {
                            "id": "filtered_contig_fastq",
                            "type": "fastq",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_fastq.fastq",
                            "waiting": false
                        },
                        {
                            "id": "contig_fasta",
                            "type": "fasta",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fasta.fasta",
                            "waiting": false
                        },
                        {
                            "id": "contig_fasta_fai",
                            "type": "fasta.fai",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/contig_fasta.fasta.fai",
                            "waiting": false
                        },
                        {
                            "id": "filtered_contig_fasta",
                            "type": "fasta",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_fasta.fasta",
                            "waiting": false
                        },
                        {
                            "id": "annotations_bed",
                            "type": "bed",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/annotations_bed.bed",
                            "waiting": false
                        },
                        {
                            "id": "cell_barcodes",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/cell_barcodes.json",
                            "waiting": false
                        },
                        {
                            "id": "paired_cell_barcodes",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/paired_cell_barcodes.json",
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/summary.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian write_contig_outs"
    },
    {
        "name": "WRITE_CONTIG_PROTO",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_PROTO",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_PROTO",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_PROTO",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_PROTO/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_PROTO/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_PROTO/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_PROTO/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
                            "waiting": false
                        },
                        {
                            "id": "contig_annotations_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd8/files/all_contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.SUMMARIZE_VDJ_REPORTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/metrics_summary_json.json",
                            "waiting": false
                        },
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "IG",
                            "waiting": false
                        },
                        {
                            "id": "gem_wells",
                            "type": "int[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "cell_barcodes",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd8/files/cell_barcodes.json",
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "multi_config_sha",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "441f739f093e36c43f57328492fe5aa9703c212f8c5a330ff0ef60c31a5f08c4",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "vdj_contig_info",
                            "type": "pb",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/WRITE_CONTIG_PROTO/fork0/chnk0-ucc6a7a7cea/files/vdj_contig_info.pb",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_PROTO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_PROTO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.SUMMARIZE_VDJ_REPORTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_PROTO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_PROTO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_PROTO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_PROTO"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_aggr martian write_contig_proto"
    },
    {
        "name": "VDJ_T_REPORTER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "TR",
                            "waiting": false
                        },
                        {
                            "id": "multi_config_sha",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "441f739f093e36c43f57328492fe5aa9703c212f8c5a330ff0ef60c31a5f08c4",
                            "waiting": false
                        },
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
                            "waiting": false
                        },
                        {
                            "id": "has_no_vdj_ref",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "vdj_gw",
                            "type": "VDJ_GEM_WELL_PROCESSOR",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "assembler_outs": {
                                    "assemblable_reads_per_bc": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/assemblable_reads_per_bc.arp.bincode",
                                    "barcode_support": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/barcode_support.csv",
                                    "barcodes_in_chunks": [
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk00-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk01-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk02-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk03-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk04-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk05-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk06-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk07-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk08-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk09-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk10-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk11-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk12-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk13-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk14-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk15-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk16-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk17-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk18-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk19-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk20-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk21-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk22-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk23-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk24-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk25-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk26-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk27-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk28-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk29-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk30-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk31-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk32-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk33-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk34-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk35-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk36-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk37-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk38-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk39-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk40-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk41-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk42-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk43-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk44-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk45-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk46-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk47-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk48-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk49-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk50-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk51-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk52-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk53-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk54-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk55-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk56-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk57-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk58-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk59-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk60-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk61-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk62-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk63-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk64-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk65-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk66-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk67-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk68-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk69-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk70-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk71-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk72-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk73-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk74-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk75-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk76-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk77-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk78-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk79-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk80-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk81-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk82-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk83-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk84-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk85-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk86-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk87-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk88-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk89-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk90-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk91-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk92-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk93-ucc6a7a72e6/files/barcodes_in_chunk.json",
                                        "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/chnk94-ucc6a7a72e6/files/barcodes_in_chunk.json"
                                    ],
                                    "contig_annotations": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                                    "contig_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_bam.bam",
                                    "contig_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/contig_bam.bam.bai",
                                    "corrected_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72c2/files/corrected_barcode_counts.json",
                                    "gem_groups": [
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1,
                                        1
                                    ],
                                    "n50_n50_rpu": 2159,
                                    "processed_read_pairs": 46574590,
                                    "raw_barcode_counts": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72c2/files/raw_barcode_counts.json",
                                    "read_shards": {
                                        "corrected_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/valid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/valid_shard.shard"
                                        ],
                                        "invalid_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk00-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk01-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk02-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk03-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk04-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk05-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk06-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk07-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk08-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk09-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk10-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk11-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk12-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk13-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk14-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk15-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk16-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk17-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk18-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk19-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk20-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk21-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk22-ucc6a7a72b9/files/invalid_shard.shard",
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/BARCODE_CORRECTION/fork0/chnk23-ucc6a7a72b9/files/invalid_shard.shard"
                                        ],
                                        "valid_reads": [
                                            "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/chnk0-ucc6a7a71c0/files/valid.shard"
                                        ]
                                    },
                                    "report": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/report.txt",
                                    "sequencing_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                                    "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/chnk0-ucc6a7a7409/files/summary.json",
                                    "summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/summary_tsv.tsv",
                                    "total_read_pairs": 58185432,
                                    "umi_summary_tsv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/umi_summary_tsv.tsv",
                                    "unmapped_sample_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/unmapped_sample_fastq.fastq"
                                },
                                "setup_chunks_outs": {
                                    "barcode_whitelist": "737K-august-2016",
                                    "chemistry_def": {
                                        "barcode": [
                                            {
                                                "kind": "gel_bead",
                                                "length": 16,
                                                "offset": 0,
                                                "read_type": "R1",
                                                "whitelist": "737K-august-2016"
                                            }
                                        ],
                                        "description": "Single Cell V(D)J R2-only",
                                        "endedness": "five_prime",
                                        "name": "SCVDJ-R2",
                                        "rna": {
                                            "length": null,
                                            "min_length": null,
                                            "offset": 0,
                                            "read_type": "R2"
                                        },
                                        "rna2": null,
                                        "strandedness": "-",
                                        "umi": {
                                            "length": 10,
                                            "min_length": null,
                                            "offset": 16,
                                            "read_type": "R1"
                                        }
                                    },
                                    "chunks": [
                                        {
                                            "chemistry": {
                                                "barcode": [
                                                    {
                                                        "kind": "gel_bead",
                                                        "length": 16,
                                                        "offset": 0,
                                                        "read_type": "R1",
                                                        "whitelist": "737K-august-2016"
                                                    }
                                                ],
                                                "description": "Single Cell V(D)J R2-only",
                                                "endedness": "five_prime",
                                                "name": "SCVDJ-R2",
                                                "rna": {
                                                    "length": null,
                                                    "min_length": null,
                                                    "offset": 0,
                                                    "read_type": "R2"
                                                },
                                                "rna2": null,
                                                "strandedness": "-",
                                                "umi": {
                                                    "length": 10,
                                                    "min_length": null,
                                                    "offset": 16,
                                                    "read_type": "R1"
                                                }
                                            },
                                            "chunk_id": 0,
                                            "fastq_id": "dimitri_TCR",
                                            "fastqs": {
                                                "i1": null,
                                                "i2": null,
                                                "r1": "/scratch/etanis/ST-118/FASTQ/dimitri_TCR_S1_L001_R1_001.fastq.gz",
                                                "r1_interleaved": false,
                                                "r2": "/scratch/etanis/ST-118/FASTQ/dimitri_TCR_S1_L001_R2_001.fastq.gz"
                                            },
                                            "gem_group": 1,
                                            "library_id": 0,
                                            "library_type": "VDJ",
                                            "read_group": "dimitri-multi:0:1:HKLTCBGXL:1",
                                            "read_lengths": {},
                                            "subsample_rate": null
                                        }
                                    ]
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_clonotype",
                            "type": "SC_VDJ_CLONOTYPE_ASSIGNER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "airr_rearrangement": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0-ucc6a7a7cdd/files/airr_annotations.tsv",
                                "all_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.csv",
                                "all_contig_annotations_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.json",
                                "clonotypes_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd5/files/clonotypes.csv",
                                "concat_ref_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.bam",
                                "concat_ref_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.bam.bai",
                                "concat_ref_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.fasta",
                                "concat_ref_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.fasta.fai",
                                "consensus_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus_annotations.csv",
                                "consensus_bam": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd7/files/consensus.bam",
                                "consensus_bam_bai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd7/files/consensus.bam.bai",
                                "consensus_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus.fasta",
                                "consensus_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus.fasta.fai",
                                "disable_vloupe": false,
                                "donor_ref_fa": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/donor_ref.fa",
                                "enclone_output": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/enclone_output.pb",
                                "filtered_contig_annotations_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_annotations.csv",
                                "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/summary.json"
                            },
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "report",
                            "type": "VdjReport",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "annotations_bed": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/annotations_bed.bed",
                                "cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/cell_barcodes.json",
                                "contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fasta.fasta",
                                "contig_fasta_fai": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fasta.fasta.fai",
                                "contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fastq.fastq",
                                "filtered_contig_fasta": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_fasta.fasta",
                                "filtered_contig_fastq": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_fastq.fastq",
                                "metrics_summary_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/metrics_summary_csv.csv",
                                "metrics_summary_json": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/metrics_summary_json.json",
                                "productive_cell_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/paired_cell_barcodes.json",
                                "receptor": "TR",
                                "vdj_contig_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_PROTO/fork0/chnk0-ucc6a7a7ce7/files/vdj_contig_info.pb",
                                "vloupe": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/VLOUPE_PREPROCESS/fork0/chnk0-ucc6a7a7cd5/files/output_for_vloupe.vloupe",
                                "web_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/web_summary.html",
                                "web_summary_data": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/web_summary_data.json"
                            },
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.SUMMARIZE_VDJ_REPORTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.VLOUPE_PREPROCESS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_PROTO",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "REPORT_CONTIGS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.REPORT_CONTIGS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/REPORT_CONTIGS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/REPORT_CONTIGS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/REPORT_CONTIGS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/REPORT_CONTIGS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/REPORT_CONTIGS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 1,
                            "__vmem_gb": 9
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/REPORT_CONTIGS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
                            "waiting": false
                        },
                        {
                            "id": "cell_barcodes",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/cell_barcodes.json",
                            "waiting": false
                        },
                        {
                            "id": "contigs",
                            "type": "fasta",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fasta.fasta",
                            "waiting": false
                        },
                        {
                            "id": "annotations",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "filter_summary",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "contig_summary",
                            "type": "tsv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/summary_tsv.tsv",
                            "waiting": false
                        },
                        {
                            "id": "umi_summary",
                            "type": "tsv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/umi_summary_tsv.tsv",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.REPORT_CONTIGS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/REPORT_CONTIGS/fork0/join-ucc6a7a7cd8/files/summary.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.REPORT_CONTIGS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.REPORT_CONTIGS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.REPORT_CONTIGS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.REPORT_CONTIGS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/vdj/report_contigs"
    },
    {
        "name": "SUMMARIZE_VDJ_REPORTS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.SUMMARIZE_VDJ_REPORTS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 2,
                    "__vmem_gb": 5
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "737K-august-2016",
                            "waiting": false
                        },
                        {
                            "id": "barcode_support",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/barcode_support.csv",
                            "waiting": false
                        },
                        {
                            "id": "summaries",
                            "type": "json[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MERGE_METRICS/fork0/chnk0-ucc6a7a7409/files/summary.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/REPORT_CONTIGS/fork0/join-ucc6a7a7cd8/files/summary.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/summary.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/summary.json"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "cell_barcodes",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/cell_barcodes.json",
                            "waiting": false
                        },
                        {
                            "id": "clonotype_summary",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd5/files/clonotypes.csv",
                            "waiting": false
                        },
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "TR",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.SUMMARIZE_VDJ_REPORTS",
                            "matchedFork": null,
                            "value": "TR",
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.SUMMARIZE_VDJ_REPORTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/metrics_summary_json.json",
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary_csv",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.SUMMARIZE_VDJ_REPORTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/metrics_summary_csv.csv",
                            "waiting": false
                        },
                        {
                            "id": "web_summary",
                            "type": "html",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.SUMMARIZE_VDJ_REPORTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/web_summary.html",
                            "waiting": false
                        },
                        {
                            "id": "web_summary_data",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.SUMMARIZE_VDJ_REPORTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/web_summary_data.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.SUMMARIZE_VDJ_REPORTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.SUMMARIZE_VDJ_REPORTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.REPORT_CONTIGS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.SUMMARIZE_VDJ_REPORTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.SUMMARIZE_VDJ_REPORTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.SUMMARIZE_VDJ_REPORTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.SUMMARIZE_VDJ_REPORTS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/vdj/summarize_reports"
    },
    {
        "name": "VLOUPE_PREPROCESS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.VLOUPE_PREPROCESS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/VLOUPE_PREPROCESS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/VLOUPE_PREPROCESS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 15,
                    "__vmem_gb": 18
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/VLOUPE_PREPROCESS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/VLOUPE_PREPROCESS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/VLOUPE_PREPROCESS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 15,
                            "__threads": 1,
                            "__vmem_gb": 18
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/VLOUPE_PREPROCESS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "pipestance_type",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "SC_VDJ_ASSEMBLER_CS",
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "enclone_output",
                            "type": "pb",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/enclone_output.pb",
                            "waiting": false
                        },
                        {
                            "id": "disable_vloupe",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "output_for_vloupe",
                            "type": "vloupe",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.VLOUPE_PREPROCESS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/VLOUPE_PREPROCESS/fork0/chnk0-ucc6a7a7cd5/files/output_for_vloupe.vloupe",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.VLOUPE_PREPROCESS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.VLOUPE_PREPROCESS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/vloupe/vloupe_preprocess"
    },
    {
        "name": "WRITE_CONTIG_OUTS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "contig_annotations",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "total_read_pairs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": 58185432,
                            "waiting": false
                        },
                        {
                            "id": "corrected_bc_counts",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/RUST_BRIDGE/fork0/join-ucc6a7a72c2/files/corrected_barcode_counts.json",
                            "waiting": false
                        },
                        {
                            "id": "assemblable_reads_per_bc",
                            "type": "arp.bincode",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/ASSEMBLE_VDJ/fork0/join-ucc6a7a72e6/files/assemblable_reads_per_bc.arp.bincode",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "contig_fastq",
                            "type": "fastq",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fastq.fastq",
                            "waiting": false
                        },
                        {
                            "id": "filtered_contig_fastq",
                            "type": "fastq",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_fastq.fastq",
                            "waiting": false
                        },
                        {
                            "id": "contig_fasta",
                            "type": "fasta",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fasta.fasta",
                            "waiting": false
                        },
                        {
                            "id": "contig_fasta_fai",
                            "type": "fasta.fai",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/contig_fasta.fasta.fai",
                            "waiting": false
                        },
                        {
                            "id": "filtered_contig_fasta",
                            "type": "fasta",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_fasta.fasta",
                            "waiting": false
                        },
                        {
                            "id": "annotations_bed",
                            "type": "bed",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/annotations_bed.bed",
                            "waiting": false
                        },
                        {
                            "id": "cell_barcodes",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/cell_barcodes.json",
                            "waiting": false
                        },
                        {
                            "id": "paired_cell_barcodes",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/paired_cell_barcodes.json",
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/summary.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian write_contig_outs"
    },
    {
        "name": "WRITE_CONTIG_PROTO",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_PROTO",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_PROTO",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_PROTO",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_PROTO/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_PROTO/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_PROTO/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_PROTO/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
                            "waiting": false
                        },
                        {
                            "id": "contig_annotations_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.SUMMARIZE_VDJ_REPORTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/metrics_summary_json.json",
                            "waiting": false
                        },
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "TR",
                            "waiting": false
                        },
                        {
                            "id": "gem_wells",
                            "type": "int[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                1
                            ],
                            "waiting": false
                        },
                        {
                            "id": "cell_barcodes",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_OUTS/fork0/chnk0-ucc6a7a7cd7/files/cell_barcodes.json",
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "multi_config_sha",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "441f739f093e36c43f57328492fe5aa9703c212f8c5a330ff0ef60c31a5f08c4",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "vdj_contig_info",
                            "type": "pb",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/WRITE_CONTIG_PROTO/fork0/chnk0-ucc6a7a7ce7/files/vdj_contig_info.pb",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_PROTO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_PROTO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.SUMMARIZE_VDJ_REPORTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_PROTO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_PROTO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_PROTO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_PROTO"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_aggr martian write_contig_proto"
    },
    {
        "name": "MULTI_WEBSUMMARY_BUILDER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "vdj_gen_inputs",
                            "type": "VdjGenInputs",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": {
                                "reference_path": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                                "vdj_reference_path": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0"
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_t_metrics_summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/metrics_summary_json.json",
                            "waiting": false
                        },
                        {
                            "id": "vdj_t_ws_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/web_summary_data.json",
                            "waiting": false
                        },
                        {
                            "id": "vdj_t_receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "TR",
                            "waiting": false
                        },
                        {
                            "id": "vdj_t_inputs",
                            "type": "VdjInputs",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "chain_type": "TR",
                                "chemistry": "SCVDJ_auto",
                                "custom_chemistry_def": null,
                                "denovo": false,
                                "force_cells": null,
                                "ground_truth_clonotype_path": null,
                                "initial_reads": null,
                                "inner_enrichment_primers": null,
                                "physical_library_id": "VDJT_1",
                                "primer_initial_reads": null,
                                "primers": [
                                    {
                                        "name": "P5",
                                        "seq": "AATGATACGGCGACCACCGAGATCT"
                                    },
                                    {
                                        "name": "P7",
                                        "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                    },
                                    {
                                        "name": "R1",
                                        "seq": "ACACTCTTTCCCTACACGACGCTCTTCCGATCT"
                                    },
                                    {
                                        "name": "R2",
                                        "seq": "GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT"
                                    },
                                    {
                                        "name": "polyA",
                                        "seq": "AAAAAAAAAAAAAAAAAAAA"
                                    },
                                    {
                                        "name": "rt_primer",
                                        "seq": "AAGCAGTGGTATCAACGCAGAGTACAT"
                                    },
                                    {
                                        "name": "spacer",
                                        "seq": "TTTCTTATATGGG"
                                    }
                                ],
                                "r1_length": null,
                                "r2_length": null,
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_TCR",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "VDJ",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_TCR"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "special_genomic_regions": null,
                                "subsample_rate": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_t_sequencing_metrics",
                            "type": "smf.json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                            "waiting": false
                        },
                        {
                            "id": "disable_vdj_t",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_metrics_summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/metrics_summary_json.json",
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_ws_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/web_summary_data.json",
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "IG",
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_inputs",
                            "type": "VdjInputs",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "chain_type": "IG",
                                "chemistry": "SCVDJ_auto",
                                "custom_chemistry_def": null,
                                "denovo": false,
                                "force_cells": null,
                                "ground_truth_clonotype_path": null,
                                "initial_reads": null,
                                "inner_enrichment_primers": null,
                                "physical_library_id": "VDJB_1",
                                "primer_initial_reads": null,
                                "primers": [
                                    {
                                        "name": "P5",
                                        "seq": "AATGATACGGCGACCACCGAGATCT"
                                    },
                                    {
                                        "name": "P7",
                                        "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                    },
                                    {
                                        "name": "R1",
                                        "seq": "ACACTCTTTCCCTACACGACGCTCTTCCGATCT"
                                    },
                                    {
                                        "name": "R2",
                                        "seq": "GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT"
                                    },
                                    {
                                        "name": "polyA",
                                        "seq": "AAAAAAAAAAAAAAAAAAAA"
                                    },
                                    {
                                        "name": "rt_primer",
                                        "seq": "AAGCAGTGGTATCAACGCAGAGTACAT"
                                    },
                                    {
                                        "name": "spacer",
                                        "seq": "TTTCTTATATGGG"
                                    }
                                ],
                                "r1_length": null,
                                "r2_length": null,
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_BCR",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "VDJ",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_BCR"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "special_genomic_regions": null,
                                "subsample_rate": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_sequencing_metrics",
                            "type": "smf.json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                            "waiting": false
                        },
                        {
                            "id": "disable_vdj_b",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "per_sample_metrics",
                            "type": "map\u003cjson\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SANITIZE_MAP_CALLS/fork0/chnk0-ucc6a7a7db5/files/dimitri-multi_summary.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "library_metrics",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/metrics_summary_json.json",
                            "waiting": false
                        },
                        {
                            "id": "multi_config",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG/fork0/chnk0-ucc6a7a7197/files/config.csv",
                            "waiting": false
                        },
                        {
                            "id": "multi_graph",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG/fork0/chnk0-ucc6a7a7197/files/multi_graph.json",
                            "waiting": false
                        },
                        {
                            "id": "common_inputs",
                            "type": "CommonInputs",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": {
                                "multi_config_sha": "441f739f093e36c43f57328492fe5aa9703c212f8c5a330ff0ef60c31a5f08c4",
                                "sample_desc": "",
                                "sample_id": "dimitri-multi"
                            },
                            "waiting": false
                        },
                        {
                            "id": "count_inputs",
                            "type": "CountInputs",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "aligner": null,
                                "cell_calling_config": {
                                    "cell_barcodes": null,
                                    "disable_ab_aggregate_detection": false,
                                    "force_cells": null,
                                    "override_library_types": null,
                                    "override_mode": null,
                                    "recovered_cells": null
                                },
                                "chemistry": "auto",
                                "custom_chemistry_def": null,
                                "enforce_library_concordance": true,
                                "feature_reference": null,
                                "force_sample_barcodes": null,
                                "gene_index": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_COUNT_INPUTS/WRITE_GENE_INDEX/fork0/chnk0-ucc6a7a71a3/files/gene_index.json",
                                "genetic_demux_params": null,
                                "include_introns": false,
                                "initial_reads": null,
                                "min_assignment_confidence": null,
                                "no_bam": false,
                                "no_secondary_analysis": false,
                                "no_target_umi_filter": false,
                                "primer_initial_reads": null,
                                "primers": [
                                    {
                                        "name": "P5",
                                        "seq": "AATGATACGGCGACCACCGAGATCT"
                                    },
                                    {
                                        "name": "P7",
                                        "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                    },
                                    {
                                        "name": "R1",
                                        "seq": "ACACTCTTTCCCTACACGACG"
                                    },
                                    {
                                        "name": "R2",
                                        "seq": "GTGACTGGAGTTCAGACGTGTG"
                                    },
                                    {
                                        "name": "switch_oligo",
                                        "seq": "AAGCAGTGGTATCAACGCAGAGTACATGGG"
                                    },
                                    {
                                        "name": "polyA",
                                        "seq": "AAAAAAAAAAAAAAAAAAAA"
                                    }
                                ],
                                "probe_barcodes_intended_pairing": null,
                                "r1_length": null,
                                "r2_length": null,
                                "reference_path": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_RNA",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "Gene Expression",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_RNA"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "special_genomic_regions": null,
                                "subsample_rate": null,
                                "targeting_method": null,
                                "tenx_cmos": null,
                                "throughput": null,
                                "trim_polya_min_score": 20,
                                "trim_tso_min_score": 20
                            },
                            "waiting": false
                        },
                        {
                            "id": "sequencing_metrics",
                            "type": "smf.json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                            "waiting": false
                        },
                        {
                            "id": "tag_contaminant_info",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_tsne_plots",
                            "type": "map\u003cjson\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SANITIZE_MAP_CALLS/fork0/chnk0-ucc6a7a7db5/files/dimitri-multi_sample_tsne_plots.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "barcode_rank_plots",
                            "type": "map\u003cjson\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "Gene Expression": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SANITIZE_MAP_CALLS/fork0/chnk0-ucc6a7a7db5/files/Gene Expression_Gene Expression_barcode_rank_plot.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "antibody_histograms",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "jibes_biplot_histogram",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cmo_tsne_plot",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_set_name",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "targeted_per_feature_metrics",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "multi_web_summary_json",
                            "type": "WRITE_MULTI_WEB_SUMMARY_JSON",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "metrics_summary_csv": {
                                    "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/WRITE_MULTI_WEB_SUMMARY_JSON/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_metric_summary_csv.json.csv"
                                },
                                "web_summary_json": {
                                    "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/WRITE_MULTI_WEB_SUMMARY_JSON/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_web_summary_data.json"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "multi_web_summaries",
                            "type": "map\u003chtml\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_WEB_SUMMARY/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_web_summary.html"
                            },
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary_csvs",
                            "type": "map\u003ccsv\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_WEB_SUMMARY/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_metrics_summary.csv"
                            },
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_MULTI_WEB_SUMMARY",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.WRITE_MULTI_WEB_SUMMARY_JSON",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SANITIZE_MAP_CALLS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "BUILD_MULTI_GRAPH_VIEW",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_MULTI_GRAPH_VIEW",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_GRAPH_VIEW",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_GRAPH_VIEW",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_GRAPH_VIEW/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_GRAPH_VIEW/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_GRAPH_VIEW/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_GRAPH_VIEW/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "multi_graph",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG/fork0/chnk0-ucc6a7a7197/files/multi_graph.json",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "view",
                            "type": "svg",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_MULTI_GRAPH_VIEW",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_GRAPH_VIEW/fork0/chnk0-ucc6a7a71a3/files/view.svg",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_MULTI_GRAPH_VIEW"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/multi/build_multi_graph_view"
    },
    {
        "name": "BUILD_MULTI_WEB_SUMMARY",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_MULTI_WEB_SUMMARY",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_WEB_SUMMARY",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_WEB_SUMMARY",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_WEB_SUMMARY/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_WEB_SUMMARY/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_WEB_SUMMARY/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_WEB_SUMMARY/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "web_summary_data",
                            "type": "map\u003cjson\u003e",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.WRITE_MULTI_WEB_SUMMARY_JSON",
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/WRITE_MULTI_WEB_SUMMARY_JSON/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_web_summary_data.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary_csvs",
                            "type": "map\u003ccsv\u003e",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.WRITE_MULTI_WEB_SUMMARY_JSON",
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/WRITE_MULTI_WEB_SUMMARY_JSON/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_metric_summary_csv.json.csv"
                            },
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "web_summaries",
                            "type": "map\u003chtml\u003e",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_MULTI_WEB_SUMMARY",
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_WEB_SUMMARY/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_web_summary.html"
                            },
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary_csvs",
                            "type": "map\u003ccsv\u003e",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_MULTI_WEB_SUMMARY",
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_WEB_SUMMARY/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_metrics_summary.csv"
                            },
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.WRITE_MULTI_WEB_SUMMARY_JSON",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_MULTI_WEB_SUMMARY"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/common/build_multi_web_summary"
    },
    {
        "name": "BUILD_VDJ_B_WS_CONTENTS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_VDJ_B_WS_CONTENTS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_VDJ_B_WS_CONTENTS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_VDJ_B_WS_CONTENTS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_VDJ_B_WS_CONTENTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_VDJ_B_WS_CONTENTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_VDJ_B_WS_CONTENTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_VDJ_B_WS_CONTENTS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "vdj_gen_inputs",
                            "type": "VdjGenInputs",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": {
                                "reference_path": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                                "vdj_reference_path": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0"
                            },
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/metrics_summary_json.json",
                            "waiting": false
                        },
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "IG",
                            "waiting": false
                        },
                        {
                            "id": "vdj_inputs",
                            "type": "VdjInputs",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "chain_type": "IG",
                                "chemistry": "SCVDJ_auto",
                                "custom_chemistry_def": null,
                                "denovo": false,
                                "force_cells": null,
                                "ground_truth_clonotype_path": null,
                                "initial_reads": null,
                                "inner_enrichment_primers": null,
                                "physical_library_id": "VDJB_1",
                                "primer_initial_reads": null,
                                "primers": [
                                    {
                                        "name": "P5",
                                        "seq": "AATGATACGGCGACCACCGAGATCT"
                                    },
                                    {
                                        "name": "P7",
                                        "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                    },
                                    {
                                        "name": "R1",
                                        "seq": "ACACTCTTTCCCTACACGACGCTCTTCCGATCT"
                                    },
                                    {
                                        "name": "R2",
                                        "seq": "GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT"
                                    },
                                    {
                                        "name": "polyA",
                                        "seq": "AAAAAAAAAAAAAAAAAAAA"
                                    },
                                    {
                                        "name": "rt_primer",
                                        "seq": "AAGCAGTGGTATCAACGCAGAGTACAT"
                                    },
                                    {
                                        "name": "spacer",
                                        "seq": "TTTCTTATATGGG"
                                    }
                                ],
                                "r1_length": null,
                                "r2_length": null,
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_BCR",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "VDJ",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_BCR"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "special_genomic_regions": null,
                                "subsample_rate": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "sequencing_metrics",
                            "type": "smf.json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                            "waiting": false
                        },
                        {
                            "id": "vdj_ws_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_B_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce4/files/web_summary_data.json",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "vdj_ws_contents",
                            "type": "vwc.json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_VDJ_B_WS_CONTENTS/fork0/chnk0-ucc6a7a7cea/files/vdj_ws_contents.vwc.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_VDJ_B_WS_CONTENTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_VDJ_B_WS_CONTENTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_VDJ_B_WS_CONTENTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_VDJ_B_WS_CONTENTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_VDJ_B_WS_CONTENTS"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian build_vdj_ws_contents"
    },
    {
        "name": "BUILD_VDJ_T_WS_CONTENTS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_VDJ_T_WS_CONTENTS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_VDJ_T_WS_CONTENTS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_VDJ_T_WS_CONTENTS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_VDJ_T_WS_CONTENTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_VDJ_T_WS_CONTENTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_VDJ_T_WS_CONTENTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_VDJ_T_WS_CONTENTS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "vdj_gen_inputs",
                            "type": "VdjGenInputs",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": {
                                "reference_path": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                                "vdj_reference_path": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0"
                            },
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/metrics_summary_json.json",
                            "waiting": false
                        },
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "TR",
                            "waiting": false
                        },
                        {
                            "id": "vdj_inputs",
                            "type": "VdjInputs",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "chain_type": "TR",
                                "chemistry": "SCVDJ_auto",
                                "custom_chemistry_def": null,
                                "denovo": false,
                                "force_cells": null,
                                "ground_truth_clonotype_path": null,
                                "initial_reads": null,
                                "inner_enrichment_primers": null,
                                "physical_library_id": "VDJT_1",
                                "primer_initial_reads": null,
                                "primers": [
                                    {
                                        "name": "P5",
                                        "seq": "AATGATACGGCGACCACCGAGATCT"
                                    },
                                    {
                                        "name": "P7",
                                        "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                    },
                                    {
                                        "name": "R1",
                                        "seq": "ACACTCTTTCCCTACACGACGCTCTTCCGATCT"
                                    },
                                    {
                                        "name": "R2",
                                        "seq": "GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT"
                                    },
                                    {
                                        "name": "polyA",
                                        "seq": "AAAAAAAAAAAAAAAAAAAA"
                                    },
                                    {
                                        "name": "rt_primer",
                                        "seq": "AAGCAGTGGTATCAACGCAGAGTACAT"
                                    },
                                    {
                                        "name": "spacer",
                                        "seq": "TTTCTTATATGGG"
                                    }
                                ],
                                "r1_length": null,
                                "r2_length": null,
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_TCR",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "VDJ",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_TCR"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "special_genomic_regions": null,
                                "subsample_rate": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "sequencing_metrics",
                            "type": "smf.json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                            "waiting": false
                        },
                        {
                            "id": "vdj_ws_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/VDJ_T_REPORTER/SUMMARIZE_VDJ_REPORTS/fork0/join-ucc6a7a7ce0/files/web_summary_data.json",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "vdj_ws_contents",
                            "type": "vwc.json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_VDJ_T_WS_CONTENTS/fork0/chnk0-ucc6a7a7ce7/files/vdj_ws_contents.vwc.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_VDJ_T_WS_CONTENTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_VDJ_T_WS_CONTENTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_VDJ_T_WS_CONTENTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_VDJ_T_WS_CONTENTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_VDJ_T_WS_CONTENTS"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian build_vdj_ws_contents"
    },
    {
        "name": "WRITE_MULTI_WEB_SUMMARY_JSON",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.WRITE_MULTI_WEB_SUMMARY_JSON",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/WRITE_MULTI_WEB_SUMMARY_JSON",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/WRITE_MULTI_WEB_SUMMARY_JSON",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/WRITE_MULTI_WEB_SUMMARY_JSON/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/WRITE_MULTI_WEB_SUMMARY_JSON/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/WRITE_MULTI_WEB_SUMMARY_JSON/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/WRITE_MULTI_WEB_SUMMARY_JSON/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "per_sample_metrics",
                            "type": "map\u003cjson\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SANITIZE_MAP_CALLS/fork0/chnk0-ucc6a7a7db5/files/dimitri-multi_summary.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "library_metrics",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-ucc6a7a7d79/files/metrics_summary_json.json",
                            "waiting": false
                        },
                        {
                            "id": "multi_config",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG/fork0/chnk0-ucc6a7a7197/files/config.csv",
                            "waiting": false
                        },
                        {
                            "id": "multi_graph",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG/fork0/chnk0-ucc6a7a7197/files/multi_graph.json",
                            "waiting": false
                        },
                        {
                            "id": "multi_graph_svg",
                            "type": "svg",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_MULTI_GRAPH_VIEW",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_MULTI_GRAPH_VIEW/fork0/chnk0-ucc6a7a71a3/files/view.svg",
                            "waiting": false
                        },
                        {
                            "id": "common_inputs",
                            "type": "CommonInputs",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": {
                                "multi_config_sha": "441f739f093e36c43f57328492fe5aa9703c212f8c5a330ff0ef60c31a5f08c4",
                                "sample_desc": "",
                                "sample_id": "dimitri-multi"
                            },
                            "waiting": false
                        },
                        {
                            "id": "count_inputs",
                            "type": "CountInputs",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "aligner": null,
                                "cell_calling_config": {
                                    "cell_barcodes": null,
                                    "disable_ab_aggregate_detection": false,
                                    "force_cells": null,
                                    "override_library_types": null,
                                    "override_mode": null,
                                    "recovered_cells": null
                                },
                                "chemistry": "auto",
                                "custom_chemistry_def": null,
                                "enforce_library_concordance": true,
                                "feature_reference": null,
                                "force_sample_barcodes": null,
                                "gene_index": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_COUNT_INPUTS/WRITE_GENE_INDEX/fork0/chnk0-ucc6a7a71a3/files/gene_index.json",
                                "genetic_demux_params": null,
                                "include_introns": false,
                                "initial_reads": null,
                                "min_assignment_confidence": null,
                                "no_bam": false,
                                "no_secondary_analysis": false,
                                "no_target_umi_filter": false,
                                "primer_initial_reads": null,
                                "primers": [
                                    {
                                        "name": "P5",
                                        "seq": "AATGATACGGCGACCACCGAGATCT"
                                    },
                                    {
                                        "name": "P7",
                                        "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                    },
                                    {
                                        "name": "R1",
                                        "seq": "ACACTCTTTCCCTACACGACG"
                                    },
                                    {
                                        "name": "R2",
                                        "seq": "GTGACTGGAGTTCAGACGTGTG"
                                    },
                                    {
                                        "name": "switch_oligo",
                                        "seq": "AAGCAGTGGTATCAACGCAGAGTACATGGG"
                                    },
                                    {
                                        "name": "polyA",
                                        "seq": "AAAAAAAAAAAAAAAAAAAA"
                                    }
                                ],
                                "probe_barcodes_intended_pairing": null,
                                "r1_length": null,
                                "r2_length": null,
                                "reference_path": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_RNA",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "Gene Expression",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_RNA"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "special_genomic_regions": null,
                                "subsample_rate": null,
                                "targeting_method": null,
                                "tenx_cmos": null,
                                "throughput": null,
                                "trim_polya_min_score": 20,
                                "trim_tso_min_score": 20
                            },
                            "waiting": false
                        },
                        {
                            "id": "sequencing_metrics",
                            "type": "smf.json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-ucc6a7a71c0/files/sequencing_metrics.smf.json",
                            "waiting": false
                        },
                        {
                            "id": "tag_contaminant_info",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_tsne_plots",
                            "type": "map\u003cjson\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SANITIZE_MAP_CALLS/fork0/chnk0-ucc6a7a7db5/files/dimitri-multi_sample_tsne_plots.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "barcode_rank_plots",
                            "type": "map\u003cjson\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "Gene Expression": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SANITIZE_MAP_CALLS/fork0/chnk0-ucc6a7a7db5/files/Gene Expression_Gene Expression_barcode_rank_plot.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "antibody_histograms",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "jibes_biplot_histogram",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cmo_tsne_plot",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_set_name",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "targeted_per_feature_metrics",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "vdj_t_contents",
                            "type": "vwc.json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_VDJ_T_WS_CONTENTS/fork0/chnk0-ucc6a7a7ce7/files/vdj_ws_contents.vwc.json",
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_contents",
                            "type": "vwc.json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/BUILD_VDJ_B_WS_CONTENTS/fork0/chnk0-ucc6a7a7cea/files/vdj_ws_contents.vwc.json",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "web_summary_json",
                            "type": "map\u003cjson\u003e",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.WRITE_MULTI_WEB_SUMMARY_JSON",
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/WRITE_MULTI_WEB_SUMMARY_JSON/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_web_summary_data.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary_csv",
                            "type": "map\u003ccsv\u003e",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.WRITE_MULTI_WEB_SUMMARY_JSON",
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_WEBSUMMARY_BUILDER/WRITE_MULTI_WEB_SUMMARY_JSON/fork0/chnk0-ucc6a7a7db6/files/dimitri-multi_metric_summary_csv.json.csv"
                            },
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.WRITE_MULTI_WEB_SUMMARY_JSON"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.WRITE_MULTI_WEB_SUMMARY_JSON"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.COUNT_ANALYZER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.WRITE_MULTI_WEB_SUMMARY_JSON"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.WRITE_MULTI_WEB_SUMMARY_JSON"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.WRITE_MULTI_WEB_SUMMARY_JSON"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_MULTI_GRAPH_VIEW",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.WRITE_MULTI_WEB_SUMMARY_JSON"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_VDJ_B_WS_CONTENTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.WRITE_MULTI_WEB_SUMMARY_JSON"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.BUILD_VDJ_T_WS_CONTENTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.WRITE_MULTI_WEB_SUMMARY_JSON"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SANITIZE_MAP_CALLS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER.WRITE_MULTI_WEB_SUMMARY_JSON"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_lib martian write_multi_web_summary_json"
    },
    {
        "name": "SAMPLE_ANALYZER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/fork_dimitri-multi",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/fork_dimitri-multi/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/fork_dimitri-multi/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_matrices_h5",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/molecule_info_dimitri-multi.h5",
                            "waiting": false
                        },
                        {
                            "id": "count_inputs",
                            "type": "CounterInputs",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "aligner": null,
                                "cell_calling_config": {
                                    "cell_barcodes": null,
                                    "disable_ab_aggregate_detection": false,
                                    "force_cells": null,
                                    "override_library_types": null,
                                    "override_mode": null,
                                    "recovered_cells": null
                                },
                                "custom_chemistry_def": null,
                                "enforce_library_concordance": true,
                                "feature_reference": null,
                                "force_sample_barcodes": null,
                                "gene_index": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/FULL_COUNT_INPUTS/WRITE_GENE_INDEX/fork0/chnk0-ucc6a7a71a3/files/gene_index.json",
                                "include_introns": false,
                                "initial_reads": null,
                                "min_assignment_confidence": null,
                                "no_bam": false,
                                "no_target_umi_filter": false,
                                "primers": [
                                    {
                                        "name": "P5",
                                        "seq": "AATGATACGGCGACCACCGAGATCT"
                                    },
                                    {
                                        "name": "P7",
                                        "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                    },
                                    {
                                        "name": "R1",
                                        "seq": "ACACTCTTTCCCTACACGACG"
                                    },
                                    {
                                        "name": "R2",
                                        "seq": "GTGACTGGAGTTCAGACGTGTG"
                                    },
                                    {
                                        "name": "switch_oligo",
                                        "seq": "AAGCAGTGGTATCAACGCAGAGTACATGGG"
                                    },
                                    {
                                        "name": "polyA",
                                        "seq": "AAAAAAAAAAAAAAAAAAAA"
                                    }
                                ],
                                "r1_length": null,
                                "r2_length": null,
                                "reference_path": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_RNA",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "Gene Expression",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_RNA"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "subsample_rate": null,
                                "targeting_method": null,
                                "trim_polya_min_score": 20,
                                "trim_tso_min_score": 20
                            },
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "aggregate_barcodes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/aggregate_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "counter_metrics_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "disable_rna",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "disable_crispr",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "disable_antibody",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "disable_targeted",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "no_secondary_analysis",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "parse_target_features",
                            "type": "PARSE_TARGET_FEATURES",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "bait_fasta": null,
                                "disable_target_umi_filter": true,
                                "disable_targeted": true,
                                "probe_set": null,
                                "rps_limit": null,
                                "summary": null,
                                "target_gene_indices": null,
                                "target_panel": null,
                                "target_panel_or_probe_set": null,
                                "target_set_name": null,
                                "targeting_method": null
                            },
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "rna_analyzer",
                            "type": "SC_RNA_ANALYZER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "analysis": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d8e/files/analysis",
                                "analysis_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d8e/files/analysis_csv",
                                "cloupe_matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork_dimitri-multi/join-ucc6a7a7d7a/files/cloupe_matrix_h5.h5",
                                "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d8e/files/summary.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "crispr_analyzer",
                            "type": "_CRISPR_ANALYZER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "antibody_analyzer",
                            "type": "_ANTIBODY_ANALYZER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "targeted_analyzer",
                            "type": "_TARGETED_ANALYZER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._ANTIBODY_ANALYZER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "SC_RNA_ANALYZER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/fork_dimitri-multi",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/fork_dimitri-multi/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/fork_dimitri-multi/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_matrices_h5",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "no_secondary_analysis",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "use_genes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip_multigenome_analysis",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_batch_correction",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "aggr_library_info",
                            "type": "map[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_analysis_bcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pca_bcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pca_genes",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_principal_comps",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_knn",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_alpha",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_sigma",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_realign_panorama",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_clusters",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "graphclust_neighbors",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_a",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_b",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "graphclust_resolution",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_perplexity",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_input_pcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_theta",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "exclude_genes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "use_bcs",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_max_dims",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_max_iter",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_stop_lying_iter",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_mom_switch_iter",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_n_neighbors",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_input_pcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_max_dims",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_min_dist",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_metric",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "analysis",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d8e/files/analysis",
                            "waiting": false
                        },
                        {
                            "id": "analysis_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d8e/files/analysis_csv",
                            "waiting": false
                        },
                        {
                            "id": "cloupe_matrix_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork_dimitri-multi/join-ucc6a7a7d7a/files/cloupe_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d8e/files/summary.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "ANALYZER_PREFLIGHT",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT/fork_dimitri-multi",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT/fork_dimitri-multi/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT/fork_dimitri-multi/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/ANALYZER_PREFLIGHT/fork_dimitri-multi/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "skip",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "filtered_matrices_h5",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "use_genes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "exclude_genes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "use_bcs",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_analysis_bcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pca_bcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pca_genes",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_principal_comps",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_batch_correction",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "cbc_knn",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_alpha",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_sigma",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_realign_panorama",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_clusters",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "graphclust_neighbors",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_a",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_b",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_perplexity",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_input_pcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_max_dims",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_max_iter",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_stop_lying_iter",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_mom_switch_iter",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tsne_theta",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_n_neighbors",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_input_pcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_max_dims",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_min_dist",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "umap_metric",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "skip_multigenome_analysis",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "skip",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "disable_run_pca",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "disable_correct_chemistry_batch",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "skip_multigenome_analysis",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/analyzer/analyzer_preflight"
    },
    {
        "name": "CHOOSE_DIMENSION_REDUCTION_OUTPUT",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork_dimitri-multi",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork_dimitri-multi/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork_dimitri-multi/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork_dimitri-multi/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "pca_h5_list",
                            "type": "h5[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_PCA/fork_dimitri-multi/join-ucc6a7a7d7e/files/pca_h5.h5",
                                null
                            ],
                            "waiting": false
                        },
                        {
                            "id": "pca_csv_list",
                            "type": "path[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_PCA/fork_dimitri-multi/join-ucc6a7a7d7e/files/pca_csv",
                                null
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork_dimitri-multi/chnk0-ucc6a7a7d81/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "pca_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork_dimitri-multi/chnk0-ucc6a7a7d81/files/pca_csv",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_PCA",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/analyzer/choose_dimension_reduction_output"
    },
    {
        "name": "COMBINE_CLUSTERING",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.COMBINE_CLUSTERING",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/COMBINE_CLUSTERING",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/COMBINE_CLUSTERING",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork_dimitri-multi",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork_dimitri-multi/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork_dimitri-multi/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork_dimitri-multi/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "kmeans_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS/fork_dimitri-multi/join-ucc6a7a7d81/files/kmeans_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "kmeans_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS/fork_dimitri-multi/join-ucc6a7a7d81/files/kmeans_csv",
                            "waiting": false
                        },
                        {
                            "id": "graphclust_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork_dimitri-multi/join-ucc6a7a7d81/files/clusters_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "graphclust_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork_dimitri-multi/join-ucc6a7a7d81/files/clusters_csv",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "clustering_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork_dimitri-multi/chnk0-ucc6a7a7d85/files/clustering_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "clustering_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork_dimitri-multi/chnk0-ucc6a7a7d85/files/clustering_csv",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.COMBINE_CLUSTERING"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.COMBINE_CLUSTERING"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.COMBINE_CLUSTERING"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/analyzer/combine_clustering"
    },
    {
        "name": "CORRECT_CHEMISTRY_BATCH",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH/fork_dimitri-multi",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH/fork_dimitri-multi/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/CORRECT_CHEMISTRY_BATCH/fork_dimitri-multi/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "dimred_matrix",
                            "type": "pickle",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "matrix_barcode_feature_info",
                            "type": "pickle",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_knn",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_alpha",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_sigma",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cbc_realign_panorama",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "batch_score_before_correction",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "batch_score_after_correction",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "aligned_pca_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "aligned_pca_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_FBPCA",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/analyzer/correct_chemistry_batch"
    },
    {
        "name": "PREPROCESS_MATRIX",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 3,
                    "__vmem_gb": 6
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork_dimitri-multi",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork_dimitri-multi/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork_dimitri-multi/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "use_genes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "exclude_genes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "use_bcs",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_bcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "force_cells",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "cloupe_matrix_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork_dimitri-multi/join-ucc6a7a7d7a/files/cloupe_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "preprocessed_matrix_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork_dimitri-multi/join-ucc6a7a7d7a/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "is_multi_genome",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/analyzer/preprocess_matrix"
    },
    {
        "name": "RUN_DIFFERENTIAL_EXPRESSION",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork_dimitri-multi",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork_dimitri-multi/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork_dimitri-multi/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "cluster_keys": [
                                {
                                    "cluster_id": 1,
                                    "cluster_type": "kmeans_2_clusters"
                                },
                                {
                                    "cluster_id": 2,
                                    "cluster_type": "kmeans_2_clusters"
                                },
                                {
                                    "cluster_id": 1,
                                    "cluster_type": "kmeans_3_clusters"
                                },
                                {
                                    "cluster_id": 2,
                                    "cluster_type": "kmeans_3_clusters"
                                },
                                {
                                    "cluster_id": 3,
                                    "cluster_type": "kmeans_3_clusters"
                                },
                                {
                                    "cluster_id": 1,
                                    "cluster_type": "kmeans_4_clusters"
                                },
                                {
                                    "cluster_id": 2,
                                    "cluster_type": "kmeans_4_clusters"
                                },
                                {
                                    "cluster_id": 3,
                                    "cluster_type": "kmeans_4_clusters"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork_dimitri-multi/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "cluster_keys": [
                                {
                                    "cluster_id": 4,
                                    "cluster_type": "kmeans_4_clusters"
                                },
                                {
                                    "cluster_id": 1,
                                    "cluster_type": "kmeans_5_clusters"
                                },
                                {
                                    "cluster_id": 2,
                                    "cluster_type": "kmeans_5_clusters"
                                },
                                {
                                    "cluster_id": 3,
                                    "cluster_type": "kmeans_5_clusters"
                                },
                                {
                                    "cluster_id": 4,
                                    "cluster_type": "kmeans_5_clusters"
                                },
                                {
                                    "cluster_id": 5,
                                    "cluster_type": "kmeans_5_clusters"
                                },
                                {
                                    "cluster_id": 1,
                                    "cluster_type": "kmeans_6_clusters"
                                },
                                {
                                    "cluster_id": 2,
                                    "cluster_type": "kmeans_6_clusters"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork_dimitri-multi/chnk1",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "cluster_keys": [
                                {
                                    "cluster_id": 3,
                                    "cluster_type": "kmeans_6_clusters"
                                },
                                {
                                    "cluster_id": 4,
                                    "cluster_type": "kmeans_6_clusters"
                                },
                                {
                                    "cluster_id": 5,
                                    "cluster_type": "kmeans_6_clusters"
                                },
                                {
                                    "cluster_id": 6,
                                    "cluster_type": "kmeans_6_clusters"
                                },
                                {
                                    "cluster_id": 1,
                                    "cluster_type": "kmeans_7_clusters"
                                },
                                {
                                    "cluster_id": 2,
                                    "cluster_type": "kmeans_7_clusters"
                                },
                                {
                                    "cluster_id": 3,
                                    "cluster_type": "kmeans_7_clusters"
                                },
                                {
                                    "cluster_id": 4,
                                    "cluster_type": "kmeans_7_clusters"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork_dimitri-multi/chnk2",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "cluster_keys": [
                                {
                                    "cluster_id": 5,
                                    "cluster_type": "kmeans_7_clusters"
                                },
                                {
                                    "cluster_id": 6,
                                    "cluster_type": "kmeans_7_clusters"
                                },
                                {
                                    "cluster_id": 7,
                                    "cluster_type": "kmeans_7_clusters"
                                },
                                {
                                    "cluster_id": 1,
                                    "cluster_type": "kmeans_8_clusters"
                                },
                                {
                                    "cluster_id": 2,
                                    "cluster_type": "kmeans_8_clusters"
                                },
                                {
                                    "cluster_id": 3,
                                    "cluster_type": "kmeans_8_clusters"
                                },
                                {
                                    "cluster_id": 4,
                                    "cluster_type": "kmeans_8_clusters"
                                },
                                {
                                    "cluster_id": 5,
                                    "cluster_type": "kmeans_8_clusters"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork_dimitri-multi/chnk3",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "cluster_keys": [
                                {
                                    "cluster_id": 6,
                                    "cluster_type": "kmeans_8_clusters"
                                },
                                {
                                    "cluster_id": 7,
                                    "cluster_type": "kmeans_8_clusters"
                                },
                                {
                                    "cluster_id": 8,
                                    "cluster_type": "kmeans_8_clusters"
                                },
                                {
                                    "cluster_id": 1,
                                    "cluster_type": "kmeans_9_clusters"
                                },
                                {
                                    "cluster_id": 2,
                                    "cluster_type": "kmeans_9_clusters"
                                },
                                {
                                    "cluster_id": 3,
                                    "cluster_type": "kmeans_9_clusters"
                                },
                                {
                                    "cluster_id": 4,
                                    "cluster_type": "kmeans_9_clusters"
                                },
                                {
                                    "cluster_id": 5,
                                    "cluster_type": "kmeans_9_clusters"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork_dimitri-multi/chnk4",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "cluster_keys": [
                                {
                                    "cluster_id": 6,
                                    "cluster_type": "kmeans_9_clusters"
                                },
                                {
                                    "cluster_id": 7,
                                    "cluster_type": "kmeans_9_clusters"
                                },
                                {
                                    "cluster_id": 8,
                                    "cluster_type": "kmeans_9_clusters"
                                },
                                {
                                    "cluster_id": 9,
                                    "cluster_type": "kmeans_9_clusters"
                                },
                                {
                                    "cluster_id": 1,
                                    "cluster_type": "kmeans_10_clusters"
                                },
                                {
                                    "cluster_id": 2,
                                    "cluster_type": "kmeans_10_clusters"
                                },
                                {
                                    "cluster_id": 3,
                                    "cluster_type": "kmeans_10_clusters"
                                },
                                {
                                    "cluster_id": 4,
                                    "cluster_type": "kmeans_10_clusters"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork_dimitri-multi/chnk5",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "cluster_keys": [
                                {
                                    "cluster_id": 5,
                                    "cluster_type": "kmeans_10_clusters"
                                },
                                {
                                    "cluster_id": 6,
                                    "cluster_type": "kmeans_10_clusters"
                                },
                                {
                                    "cluster_id": 7,
                                    "cluster_type": "kmeans_10_clusters"
                                },
                                {
                                    "cluster_id": 8,
                                    "cluster_type": "kmeans_10_clusters"
                                },
                                {
                                    "cluster_id": 9,
                                    "cluster_type": "kmeans_10_clusters"
                                },
                                {
                                    "cluster_id": 10,
                                    "cluster_type": "kmeans_10_clusters"
                                },
                                {
                                    "cluster_id": 1,
                                    "cluster_type": "graphclust"
                                },
                                {
                                    "cluster_id": 2,
                                    "cluster_type": "graphclust"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork_dimitri-multi/chnk6",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4,
                            "cluster_keys": [
                                {
                                    "cluster_id": 3,
                                    "cluster_type": "graphclust"
                                },
                                {
                                    "cluster_id": 4,
                                    "cluster_type": "graphclust"
                                },
                                {
                                    "cluster_id": 5,
                                    "cluster_type": "graphclust"
                                },
                                {
                                    "cluster_id": 6,
                                    "cluster_type": "graphclust"
                                },
                                {
                                    "cluster_id": 7,
                                    "cluster_type": "graphclust"
                                },
                                {
                                    "cluster_id": 8,
                                    "cluster_type": "graphclust"
                                },
                                {
                                    "cluster_id": 9,
                                    "cluster_type": "graphclust"
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork_dimitri-multi/chnk7",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork_dimitri-multi/join-ucc6a7a7d7a/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "clustering_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork_dimitri-multi/chnk0-ucc6a7a7d85/files/clustering_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_clusters",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "diffexp_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork_dimitri-multi/join-ucc6a7a7d86/files/diffexp_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "diffexp_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork_dimitri-multi/join-ucc6a7a7d86/files/diffexp_csv",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.COMBINE_CLUSTERING",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_ana martian diff_exp_stage"
    },
    {
        "name": "RUN_FBPCA",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_FBPCA",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_FBPCA",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_FBPCA",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_FBPCA/fork_dimitri-multi",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_FBPCA/fork_dimitri-multi/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_FBPCA/fork_dimitri-multi/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork_dimitri-multi/join-ucc6a7a7d7a/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "library_info",
                            "type": "map[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "dimred_matrix",
                            "type": "pickle",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "matrix_barcode_feature_info",
                            "type": "pickle",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_FBPCA"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_FBPCA"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/analyzer/run_fbpca"
    },
    {
        "name": "RUN_GRAPH_CLUSTERING",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 4,
                    "__mem_gb": 2,
                    "__vmem_gb": 5
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork_dimitri-multi",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork_dimitri-multi/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork_dimitri-multi/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork_dimitri-multi/join-ucc6a7a7d7a/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork_dimitri-multi/chnk0-ucc6a7a7d81/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "num_neighbors",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_a",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "neighbor_b",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "input_pcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_bcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "similarity_type",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "nn",
                            "waiting": false
                        },
                        {
                            "id": "balltree_leaf_size",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "resolution",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "clusters_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork_dimitri-multi/join-ucc6a7a7d81/files/clusters_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "clusters_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork_dimitri-multi/join-ucc6a7a7d81/files/clusters_csv",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_ana martian graph_clustering_stage"
    },
    {
        "name": "RUN_KMEANS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS/fork_dimitri-multi",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS/fork_dimitri-multi/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS/fork_dimitri-multi/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 2
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS/fork_dimitri-multi/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 1,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 3
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS/fork_dimitri-multi/chnk1",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 2,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS/fork_dimitri-multi/chnk2",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 3,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 5
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS/fork_dimitri-multi/chnk3",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 4,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 6
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS/fork_dimitri-multi/chnk4",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 5,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 7
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS/fork_dimitri-multi/chnk5",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 6,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 8
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS/fork_dimitri-multi/chnk6",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 7,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 9
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS/fork_dimitri-multi/chnk7",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    },
                    {
                        "index": 8,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "n_clusters": 10
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS/fork_dimitri-multi/chnk8",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork_dimitri-multi/join-ucc6a7a7d7a/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork_dimitri-multi/chnk0-ucc6a7a7d81/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_clusters",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_bcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "kmeans_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS/fork_dimitri-multi/join-ucc6a7a7d81/files/kmeans_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "kmeans_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS/fork_dimitri-multi/join-ucc6a7a7d81/files/kmeans_csv",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/analyzer/run_kmeans"
    },
    {
        "name": "RUN_MULTIGENOME_ANALYSIS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork_dimitri-multi",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork_dimitri-multi/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork_dimitri-multi/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_matrices_h5",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "is_multi_genome",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "multi_genome_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d7e/files/multi_genome_csv",
                            "waiting": false
                        },
                        {
                            "id": "multi_genome_json",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d7e/files/multi_genome_json",
                            "waiting": false
                        },
                        {
                            "id": "multi_genome_summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d7e/files/multi_genome_summary.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/analyzer/run_multigenome_analysis"
    },
    {
        "name": "RUN_PCA",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_PCA",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_PCA",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_PCA",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_PCA/fork_dimitri-multi",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_PCA/fork_dimitri-multi/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_PCA/fork_dimitri-multi/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork_dimitri-multi/join-ucc6a7a7d7a/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_bcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_genes",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "num_pcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_PCA/fork_dimitri-multi/join-ucc6a7a7d7e/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "pca_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_PCA/fork_dimitri-multi/join-ucc6a7a7d7e/files/pca_csv",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_PCA"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_PCA"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_ana martian pca_stage"
    },
    {
        "name": "RUN_TSNE",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_TSNE",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_TSNE",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_TSNE/fork_dimitri-multi",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_TSNE/fork_dimitri-multi/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_TSNE/fork_dimitri-multi/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "feature_type": "Gene Expression",
                            "tsne_dims": 2
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_TSNE/fork_dimitri-multi/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork_dimitri-multi/join-ucc6a7a7d7a/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork_dimitri-multi/chnk0-ucc6a7a7d81/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perplexity",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "input_pcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_dims",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_iter",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "stop_lying_iter",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "mom_switch_iter",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "theta",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "tsne_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_TSNE/fork_dimitri-multi/join-ucc6a7a7d81/files/tsne_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "tsne_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_TSNE/fork_dimitri-multi/join-ucc6a7a7d81/files/tsne_csv",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_ana martian tsne_stage"
    },
    {
        "name": "RUN_UMAP",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_UMAP",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_UMAP",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_UMAP/fork_dimitri-multi",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_UMAP/fork_dimitri-multi/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_UMAP/fork_dimitri-multi/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 1,
                            "__vmem_gb": 7,
                            "feature_type": "Gene Expression",
                            "umap_dims": 2
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_UMAP/fork_dimitri-multi/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork_dimitri-multi/join-ucc6a7a7d7a/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork_dimitri-multi/chnk0-ucc6a7a7d81/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "random_seed",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "n_neighbors",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "input_pcs",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "max_dims",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "min_dist",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "metric",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "umap_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_UMAP/fork_dimitri-multi/join-ucc6a7a7d81/files/umap_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "umap_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_UMAP/fork_dimitri-multi/join-ucc6a7a7d81/files/umap_csv",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_ana martian umap_stage"
    },
    {
        "name": "SUMMARIZE_ANALYSIS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrix_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork_dimitri-multi/join-ucc6a7a7d7a/files/preprocessed_matrix_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "pca_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork_dimitri-multi/chnk0-ucc6a7a7d81/files/pca_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "clustering_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork_dimitri-multi/chnk0-ucc6a7a7d85/files/clustering_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "diffexp_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork_dimitri-multi/join-ucc6a7a7d86/files/diffexp_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "tsne_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_TSNE/fork_dimitri-multi/join-ucc6a7a7d81/files/tsne_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "umap_h5",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_UMAP/fork_dimitri-multi/join-ucc6a7a7d81/files/umap_h5.h5",
                            "waiting": false
                        },
                        {
                            "id": "pca_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork_dimitri-multi/chnk0-ucc6a7a7d81/files/pca_csv",
                            "waiting": false
                        },
                        {
                            "id": "clustering_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork_dimitri-multi/chnk0-ucc6a7a7d85/files/clustering_csv",
                            "waiting": false
                        },
                        {
                            "id": "diffexp_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_DIFFERENTIAL_EXPRESSION/fork_dimitri-multi/join-ucc6a7a7d86/files/diffexp_csv",
                            "waiting": false
                        },
                        {
                            "id": "tsne_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_TSNE/fork_dimitri-multi/join-ucc6a7a7d81/files/tsne_csv",
                            "waiting": false
                        },
                        {
                            "id": "umap_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_UMAP/fork_dimitri-multi/join-ucc6a7a7d81/files/umap_csv",
                            "waiting": false
                        },
                        {
                            "id": "multi_genome_summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d7e/files/multi_genome_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "multi_genome_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d7e/files/multi_genome_csv",
                            "waiting": false
                        },
                        {
                            "id": "multi_genome_json",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/RUN_MULTIGENOME_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d7e/files/multi_genome_json",
                            "waiting": false
                        },
                        {
                            "id": "is_multi_genome",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "chemistry_batch_correction",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "batch_score_before_correction",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "batch_score_after_correction",
                            "type": "float",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "analysis",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d8e/files/analysis",
                            "waiting": false
                        },
                        {
                            "id": "analysis_csv",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d8e/files/analysis_csv",
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d8e/files/summary.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.COMBINE_CLUSTERING",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/analyzer/summarize_analysis"
    },
    {
        "name": "_ANTIBODY_ANALYZER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._ANTIBODY_ANALYZER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_ANTIBODY_ANALYZER",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_ANTIBODY_ANALYZER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_ANTIBODY_ANALYZER/fork_dimitri-multi",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_ANTIBODY_ANALYZER/fork_dimitri-multi/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_ANTIBODY_ANALYZER/fork_dimitri-multi/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "aggregate_barcodes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/aggregate_barcodes.csv",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "antibody_analysis",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "antibody_histograms_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._ANTIBODY_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._ANTIBODY_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._ANTIBODY_ANALYZER.CALL_ANTIBODIES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._ANTIBODY_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._ANTIBODY_ANALYZER.SUMMARIZE_ANTIBODY_ANALYSIS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._ANTIBODY_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._ANTIBODY_ANALYZER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CALL_ANTIBODIES",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._ANTIBODY_ANALYZER.CALL_ANTIBODIES",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_ANTIBODY_ANALYZER/CALL_ANTIBODIES",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_ANTIBODY_ANALYZER/CALL_ANTIBODIES",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_ANTIBODY_ANALYZER/CALL_ANTIBODIES/fork_dimitri-multi",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_ANTIBODY_ANALYZER/CALL_ANTIBODIES/fork_dimitri-multi/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_ANTIBODY_ANALYZER/CALL_ANTIBODIES/fork_dimitri-multi/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "antibody_histograms_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._ANTIBODY_ANALYZER.CALL_ANTIBODIES",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._ANTIBODY_ANALYZER.CALL_ANTIBODIES"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/feature/call_antibodies"
    },
    {
        "name": "SUMMARIZE_ANTIBODY_ANALYSIS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._ANTIBODY_ANALYZER.SUMMARIZE_ANTIBODY_ANALYSIS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_ANTIBODY_ANALYZER/SUMMARIZE_ANTIBODY_ANALYSIS",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_ANTIBODY_ANALYZER/SUMMARIZE_ANTIBODY_ANALYSIS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_ANTIBODY_ANALYZER/SUMMARIZE_ANTIBODY_ANALYSIS/fork0",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_ANTIBODY_ANALYZER/SUMMARIZE_ANTIBODY_ANALYSIS/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_ANTIBODY_ANALYZER/SUMMARIZE_ANTIBODY_ANALYSIS/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "aggregate_barcodes",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-ucc6a7a7c51/files/aggregate_barcodes.csv",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "antibody_analysis",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._ANTIBODY_ANALYZER.SUMMARIZE_ANTIBODY_ANALYSIS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._ANTIBODY_ANALYZER.SUMMARIZE_ANTIBODY_ANALYSIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/feature/summarize_antibody_analysis"
    },
    {
        "name": "_CRISPR_ANALYZER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER/fork_dimitri-multi",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER/fork_dimitri-multi/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER/fork_dimitri-multi/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "counter_metrics_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_summary.json",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "cells_per_protospacer",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "crispr_analysis_metrics",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "crispr_analysis",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CALL_PROTOSPACERS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER/CALL_PROTOSPACERS",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER/CALL_PROTOSPACERS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER/CALL_PROTOSPACERS/fork_dimitri-multi",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER/CALL_PROTOSPACERS/fork_dimitri-multi/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER/CALL_PROTOSPACERS/fork_dimitri-multi/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "counter_metrics_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_summary.json",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "protospacer_calls_summary",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_calls_per_cell",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_call_metrics_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cells_per_protospacer",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_umi_thresholds_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_umi_thresholds_csv",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/feature/call_protospacers"
    },
    {
        "name": "SUMMARIZE_CRISPR_ANALYSIS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS/fork_dimitri-multi",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS/fork_dimitri-multi/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER/SUMMARIZE_CRISPR_ANALYSIS/fork_dimitri-multi/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_calls_summary",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_calls_per_cell",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cells_per_protospacer",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_umi_thresholds_csv",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "protospacer_umi_thresholds_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perturbation_efficiencies_by_feature",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perturbations_efficiencies_by_target",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perturbation_effects_by_feature",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perturbation_effects_by_target",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "crispr_analysis",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/feature/summarize_crispr_analysis"
    },
    {
        "name": "_PERTURBATIONS_BY_FEATURE",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE/fork_dimitri-multi",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE/fork_dimitri-multi/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_FEATURE/fork_dimitri-multi/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "protospacer_calls_per_cell",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "by_feature",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "ignore_multiples",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "perturbation_efficiencies",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perturbation_effects_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/feature/measure_perturbations"
    },
    {
        "name": "_PERTURBATIONS_BY_TARGET",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET/fork_dimitri-multi",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET/fork_dimitri-multi/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_CRISPR_ANALYZER/_PERTURBATIONS_BY_TARGET/fork_dimitri-multi/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "protospacer_calls_per_cell",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "filtered_feature_counts_matrix",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "by_feature",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "ignore_multiples",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "perturbation_efficiencies",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "perturbation_effects_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/feature/measure_perturbations"
    },
    {
        "name": "_TARGETED_ANALYZER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER/fork_dimitri-multi",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER/fork_dimitri-multi/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER/fork_dimitri-multi/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/molecule_info_dimitri-multi.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "basic_counter_summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "targeted_summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "targeted_analysis_metrics",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "per_feature_metrics_csv",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER.CALCULATE_TARGETED_METRICS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER.SUMMARIZE_TARGETED_ANALYSIS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CALCULATE_TARGETED_METRICS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER.CALCULATE_TARGETED_METRICS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER/CALCULATE_TARGETED_METRICS",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER/CALCULATE_TARGETED_METRICS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER/CALCULATE_TARGETED_METRICS/fork_dimitri-multi",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER/CALCULATE_TARGETED_METRICS/fork_dimitri-multi/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER/CALCULATE_TARGETED_METRICS/fork_dimitri-multi/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/molecule_info_dimitri-multi.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "basic_counter_summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "targeted_summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER.CALCULATE_TARGETED_METRICS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "per_feature_metrics_csv",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER.CALCULATE_TARGETED_METRICS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER.CALCULATE_TARGETED_METRICS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER.CALCULATE_TARGETED_METRICS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/targeted/calculate_targeted_metrics"
    },
    {
        "name": "SUBSAMPLE_OFF_TARGET_READS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_OFF_TARGET_READS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER/SUBSAMPLE_OFF_TARGET_READS",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER/SUBSAMPLE_OFF_TARGET_READS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER/SUBSAMPLE_OFF_TARGET_READS/fork_dimitri-multi",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER/SUBSAMPLE_OFF_TARGET_READS/fork_dimitri-multi/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER/SUBSAMPLE_OFF_TARGET_READS/fork_dimitri-multi/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/molecule_info_dimitri-multi.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "target_mode",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "offtarget",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_OFF_TARGET_READS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "merged_metrics",
                            "type": "pickle",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_OFF_TARGET_READS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_OFF_TARGET_READS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/counter/subsample_reads"
    },
    {
        "name": "SUBSAMPLE_ON_TARGET_READS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_ON_TARGET_READS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER/SUBSAMPLE_ON_TARGET_READS",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER/SUBSAMPLE_ON_TARGET_READS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER/SUBSAMPLE_ON_TARGET_READS/fork_dimitri-multi",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER/SUBSAMPLE_ON_TARGET_READS/fork_dimitri-multi/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER/SUBSAMPLE_ON_TARGET_READS/fork_dimitri-multi/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/molecule_info_dimitri-multi.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "target_mode",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "ontarget",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_ON_TARGET_READS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "merged_metrics",
                            "type": "pickle",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_ON_TARGET_READS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_ON_TARGET_READS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/counter/subsample_reads"
    },
    {
        "name": "SUMMARIZE_TARGETED_ANALYSIS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER.SUMMARIZE_TARGETED_ANALYSIS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER/SUMMARIZE_TARGETED_ANALYSIS",
        "state": "disabled",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER/SUMMARIZE_TARGETED_ANALYSIS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "disabled",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER/SUMMARIZE_TARGETED_ANALYSIS/fork_dimitri-multi",
                    "names": [
                        "disabled",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER/SUMMARIZE_TARGETED_ANALYSIS/fork_dimitri-multi/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/_TARGETED_ANALYZER/SUMMARIZE_TARGETED_ANALYSIS/fork_dimitri-multi/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "summaries",
                            "type": "json[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                null,
                                null,
                                null
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER.SUMMARIZE_TARGETED_ANALYSIS",
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER.CALCULATE_TARGETED_METRICS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER.SUMMARIZE_TARGETED_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_OFF_TARGET_READS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER.SUMMARIZE_TARGETED_ANALYSIS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_ON_TARGET_READS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER._TARGETED_ANALYZER.SUMMARIZE_TARGETED_ANALYSIS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/targeted/summarize_targeted_analysis"
    },
    {
        "name": "SAMPLE_REPORTER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/fork_dimitri-multi",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/fork_dimitri-multi/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/fork_dimitri-multi/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_outs",
                            "type": "SampleSlfeOuts",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": {
                                "feature_reference": null,
                                "target_panel": null,
                                "sample": "dimitri-multi",
                                "bam_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_dimitri-multi.bam",
                                "bam_index_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_dimitri-multi.bam.bai",
                                "molecule_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/molecule_info_dimitri-multi.h5",
                                "matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                                "all_genes_matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix.h5",
                                "filtered_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_barcodes.csv",
                                "matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix",
                                "all_genes_matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix",
                                "metrics_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_summary.json",
                                "per_barcode_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_per_barcode_metrics.csv"
                            },
                            "waiting": false
                        },
                        {
                            "id": "count_analyzer",
                            "type": "SC_RNA_ANALYZER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "analysis": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d8e/files/analysis",
                                "analysis_csv": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d8e/files/analysis_csv",
                                "cloupe_matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork_dimitri-multi/join-ucc6a7a7d7a/files/cloupe_matrix_h5.h5",
                                "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d8e/files/summary.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "crispr_analyzer",
                            "type": "_CRISPR_ANALYZER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "targeted_analyzer",
                            "type": "_TARGETED_ANALYZER",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_assignment_metrics",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/dimitri-multi_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "target_features_metrics",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "config",
                            "type": "FullPipelineConfig",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "disable_count": false,
                                "disable_multi": false,
                                "disable_multi_count": false,
                                "disable_vdj_b": false,
                                "disable_vdj_t": false,
                                "has_no_vdj_ref": false
                            },
                            "waiting": false
                        },
                        {
                            "id": "count_pipestance_type",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "SC_RNA_COUNTER_CS",
                            "waiting": false
                        },
                        {
                            "id": "cell_calling_config",
                            "type": "CellCalling",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "cell_barcodes": null,
                                "disable_ab_aggregate_detection": false,
                                "force_cells": null,
                                "override_library_types": null,
                                "override_mode": null,
                                "recovered_cells": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0/chnk0-ucc6a7a7c4d/files/barcode_summary.h5",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        },
                        {
                            "id": "cells_per_tag",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "metrics_summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS/fork_dimitri-multi/join-ucc6a7a7db3/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "cloupe",
                            "type": "cloupe",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/CLOUPE_PREPROCESS/fork_dimitri-multi/join-ucc6a7a7db5/files/output_for_cloupe.cloupe",
                            "waiting": false
                        },
                        {
                            "id": "sample_tsne_plots",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/GENERATE_SAMPLE_TSNE_PLOTS/fork_dimitri-multi/join-ucc6a7a7d8f/files/sample_tsne_plots.json",
                            "waiting": false
                        },
                        {
                            "id": "vdj_t_report",
                            "type": "VdjReport",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_report",
                            "type": "VdjReport",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER.CLOUPE_PREPROCESS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER.GENERATE_SAMPLE_TSNE_PLOTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CLOUPE_PREPROCESS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER.CLOUPE_PREPROCESS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/CLOUPE_PREPROCESS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/CLOUPE_PREPROCESS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/CLOUPE_PREPROCESS/fork_dimitri-multi",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/CLOUPE_PREPROCESS/fork_dimitri-multi/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/CLOUPE_PREPROCESS/fork_dimitri-multi/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 6,
                            "__threads": 2,
                            "__vmem_gb": 9
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/CLOUPE_PREPROCESS/fork_dimitri-multi/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "pipestance_type",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "SC_RNA_COUNTER_CS",
                            "waiting": false
                        },
                        {
                            "id": "sample_id",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "dimitri-multi",
                            "waiting": false
                        },
                        {
                            "id": "sample_desc",
                            "type": "string",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "",
                            "waiting": false
                        },
                        {
                            "id": "analysis",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d8e/files/analysis",
                            "waiting": false
                        },
                        {
                            "id": "filtered_gene_bc_matrices_h5",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "metrics_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS/fork_dimitri-multi/join-ucc6a7a7db3/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "aggregation_csv",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "gem_group_index_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tissue_image_paths",
                            "type": "path[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "dark_images",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "tissue_positions_list",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "fiducial_positions_list",
                            "type": "txt",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "dzi_info",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "dzi_tiles_paths",
                            "type": "path[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "scale_factors_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "no_secondary_analysis",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "barcode_whitelist",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "loupe_map",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "product_type",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "sc",
                            "waiting": false
                        },
                        {
                            "id": "cells_per_tag",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cells_per_protospacer",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "spatial_enrichment",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "output_for_cloupe",
                            "type": "cloupe",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/CLOUPE_PREPROCESS/fork_dimitri-multi/join-ucc6a7a7db5/files/output_for_cloupe.cloupe",
                            "waiting": false
                        },
                        {
                            "id": "gem_group_index_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/CLOUPE_PREPROCESS/fork_dimitri-multi/join-ucc6a7a7db5/files/gem_group_index_json.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER.CLOUPE_PREPROCESS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER.CLOUPE_PREPROCESS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER.CLOUPE_PREPROCESS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER.CLOUPE_PREPROCESS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER.CLOUPE_PREPROCESS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER.CLOUPE_PREPROCESS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/cloupe/cloupe_preprocess"
    },
    {
        "name": "GENERATE_SAMPLE_TSNE_PLOTS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER.GENERATE_SAMPLE_TSNE_PLOTS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/GENERATE_SAMPLE_TSNE_PLOTS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/GENERATE_SAMPLE_TSNE_PLOTS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 2.0947265625,
                    "__vmem_gb": 5.0947265625
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/GENERATE_SAMPLE_TSNE_PLOTS/fork_dimitri-multi",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/GENERATE_SAMPLE_TSNE_PLOTS/fork_dimitri-multi/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/GENERATE_SAMPLE_TSNE_PLOTS/fork_dimitri-multi/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrices_h5",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "analysis",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d8e/files/analysis",
                            "waiting": false
                        },
                        {
                            "id": "is_antibody_only",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "sample_tsne_plots",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER.GENERATE_SAMPLE_TSNE_PLOTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/GENERATE_SAMPLE_TSNE_PLOTS/fork_dimitri-multi/join-ucc6a7a7d8f/files/sample_tsne_plots.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER.GENERATE_SAMPLE_TSNE_PLOTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER.GENERATE_SAMPLE_TSNE_PLOTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER.GENERATE_SAMPLE_TSNE_PLOTS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/multi/generate_sample_tsne_plots"
    },
    {
        "name": "_SAMPLE_CELLS_REPORTER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/fork_dimitri-multi",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/fork_dimitri-multi/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/fork_dimitri-multi/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/molecule_info_dimitri-multi.h5",
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "matrices_h5",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "matrix_computer_summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "per_barcode_metrics",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_per_barcode_metrics.csv",
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0/chnk0-ucc6a7a7c4d/files/barcode_summary.h5",
                            "waiting": false
                        },
                        {
                            "id": "sample_assignment_metrics",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/dimitri-multi_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "count_analyzer_metrics",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d8e/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "targeted_analyzer_metrics",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "crispr_analyzer_metrics",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_features_metrics",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS/fork_dimitri-multi/join-ucc6a7a7db3/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "merged_subsampling_metrics",
                            "type": "pickle",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER.SUBSAMPLE_READS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/SUBSAMPLE_READS/fork_dimitri-multi/join-ucc6a7a7d79/files/merged_metrics.pickle",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER.SUBSAMPLE_READS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "SUBSAMPLE_READS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER.SUBSAMPLE_READS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/SUBSAMPLE_READS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/SUBSAMPLE_READS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 6,
                    "__vmem_gb": 9
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/SUBSAMPLE_READS/fork_dimitri-multi",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/SUBSAMPLE_READS/fork_dimitri-multi/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/SUBSAMPLE_READS/fork_dimitri-multi/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 3,
                            "__threads": 1,
                            "__vmem_gb": 6,
                            "chunk_len": 9210225,
                            "chunk_start": 0,
                            "subsample_info": [
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 5000,
                                    "library_subsample_rates": [
                                        0.04356875315683356
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 10000,
                                    "library_subsample_rates": [
                                        0.08713750631366712
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 11476,
                                    "library_subsample_rates": [
                                        0.09999900224556438
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 20000,
                                    "library_subsample_rates": [
                                        0.17427501262733425
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 22952,
                                    "library_subsample_rates": [
                                        0.19999800449112876
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 30000,
                                    "library_subsample_rates": [
                                        0.26141251894100137
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 34428,
                                    "library_subsample_rates": [
                                        0.2999970067366931
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 45904,
                                    "library_subsample_rates": [
                                        0.3999960089822575
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 50000,
                                    "library_subsample_rates": [
                                        0.43568753156833556
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 57380,
                                    "library_subsample_rates": [
                                        0.4999950112278219
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 68856,
                                    "library_subsample_rates": [
                                        0.5999940134733862
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 80332,
                                    "library_subsample_rates": [
                                        0.6999930157189507
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 91808,
                                    "library_subsample_rates": [
                                        0.799992017964515
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 103285,
                                    "library_subsample_rates": [
                                        0.8999997339607109
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_rpc",
                                    "target_read_pairs_per_cell": 114761,
                                    "library_subsample_rates": [
                                        1.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 5000,
                                    "library_subsample_rates": [
                                        0.0663245113168268
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 7538,
                                    "library_subsample_rates": [
                                        0.0999908332612481
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 10000,
                                    "library_subsample_rates": [
                                        0.1326490226336536
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 15077,
                                    "library_subsample_rates": [
                                        0.19999493142475955
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 20000,
                                    "library_subsample_rates": [
                                        0.2652980452673072
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 22616,
                                    "library_subsample_rates": [
                                        0.299999029588271
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 30000,
                                    "library_subsample_rates": [
                                        0.39794706790096085
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 30154,
                                    "library_subsample_rates": [
                                        0.3999898628495191
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 37693,
                                    "library_subsample_rates": [
                                        0.49999396101303056
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 45232,
                                    "library_subsample_rates": [
                                        0.599998059176542
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 50000,
                                    "library_subsample_rates": [
                                        0.6632451131682681
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 52770,
                                    "library_subsample_rates": [
                                        0.6999888924377901
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 60309,
                                    "library_subsample_rates": [
                                        0.7999929906013016
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 67848,
                                    "library_subsample_rates": [
                                        0.899997088764813
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "conf_mapped_barcoded_filtered_bc_rpc",
                                    "target_read_pairs_per_cell": 75386,
                                    "library_subsample_rates": [
                                        1.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 10000,
                                    "library_subsample_rates": [
                                        4.284046524762395e-05
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 50000,
                                    "library_subsample_rates": [
                                        0.00021420232623811975
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 100000,
                                    "library_subsample_rates": [
                                        0.0004284046524762395
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 250000,
                                    "library_subsample_rates": [
                                        0.0010710116311905987
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 500000,
                                    "library_subsample_rates": [
                                        0.0021420232623811973
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 1000000,
                                    "library_subsample_rates": [
                                        0.004284046524762395
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 2500000,
                                    "library_subsample_rates": [
                                        0.010710116311905988
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 5000000,
                                    "library_subsample_rates": [
                                        0.021420232623811975
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 7500000,
                                    "library_subsample_rates": [
                                        0.032130348935717964
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 10000000,
                                    "library_subsample_rates": [
                                        0.04284046524762395
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 23342416,
                                    "library_subsample_rates": [
                                        0.09999999614435813
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 46684833,
                                    "library_subsample_rates": [
                                        0.19999999657276277
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 50000000,
                                    "library_subsample_rates": [
                                        0.21420232623811974
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 70027250,
                                    "library_subsample_rates": [
                                        0.2999999970011674
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 93369667,
                                    "library_subsample_rates": [
                                        0.3999999974295721
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 100000000,
                                    "library_subsample_rates": [
                                        0.4284046524762395
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 116712084,
                                    "library_subsample_rates": [
                                        0.4999999978579767
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 140054501,
                                    "library_subsample_rates": [
                                        0.5999999982863814
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 163396918,
                                    "library_subsample_rates": [
                                        0.699999998714786
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 186739335,
                                    "library_subsample_rates": [
                                        0.7999999991431906
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 210081752,
                                    "library_subsample_rates": [
                                        0.8999999995715954
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 233424169,
                                    "library_subsample_rates": [
                                        1.0
                                    ]
                                },
                                {
                                    "library_type": "Gene Expression",
                                    "subsample_type": "raw_reads",
                                    "target_read_pairs_per_cell": 1000000000,
                                    "library_subsample_rates": [
                                        0.0
                                    ]
                                }
                            ]
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/SUBSAMPLE_READS/fork_dimitri-multi/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "molecule_info",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/molecule_info_dimitri-multi.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "target_mode",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER.SUBSAMPLE_READS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/SUBSAMPLE_READS/fork_dimitri-multi/join-ucc6a7a7d79/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "merged_metrics",
                            "type": "pickle",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER.SUBSAMPLE_READS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/SUBSAMPLE_READS/fork_dimitri-multi/join-ucc6a7a7d79/files/merged_metrics.pickle",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER.SUBSAMPLE_READS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/counter/subsample_reads"
    },
    {
        "name": "SUMMARIZE_BASIC_REPORTS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 5,
                    "__vmem_gb": 8
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS/fork_dimitri-multi",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS/fork_dimitri-multi/split",
                    "names": [
                        "args",
                        "complete",
                        "jobinfo",
                        "log",
                        "stage_defs",
                        "stderr",
                        "stdout"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS/fork_dimitri-multi/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "chunk_outs",
                        "complete",
                        "jobinfo",
                        "log",
                        "outs",
                        "stderr",
                        "stdout"
                    ]
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "matrices_h5",
                            "type": "h5",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix.h5",
                            "waiting": false
                        },
                        {
                            "id": "filtered_barcodes",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_barcodes.csv",
                            "waiting": false
                        },
                        {
                            "id": "per_barcode_metrics",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_per_barcode_metrics.csv",
                            "waiting": false
                        },
                        {
                            "id": "matrix_computer_summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_summary.json",
                            "waiting": false
                        },
                        {
                            "id": "barcode_summary",
                            "type": "h5",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_BARCODE_SUMMARY/fork0/chnk0-ucc6a7a7c4d/files/barcode_summary.h5",
                            "waiting": false
                        },
                        {
                            "id": "recovered_cells",
                            "type": "int",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "reference_path",
                            "type": "path",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-gex-GRCh38-2020-A",
                            "waiting": false
                        },
                        {
                            "id": "cell_bcs_only",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": true,
                            "waiting": false
                        },
                        {
                            "id": "summary_jsons",
                            "type": "json[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_summary.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/SUBSAMPLE_READS/fork_dimitri-multi/join-ucc6a7a7d79/files/summary.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/_ASSIGN_TAGS/DETERMINE_SAMPLE_ASSIGNMENTS/fork0/chnk0-ucc6a7a7cde/files/dimitri-multi_summary.json",
                                "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork_dimitri-multi/join-ucc6a7a7d8e/files/summary.json",
                                null,
                                null,
                                null
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS/fork_dimitri-multi/join-ucc6a7a7db3/files/summary.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_ANALYZER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER.SUBSAMPLE_READS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER._SAMPLE_CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/counter/summarize_basic_reports"
    },
    {
        "name": "SANITIZE_MAP_CALLS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SANITIZE_MAP_CALLS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SANITIZE_MAP_CALLS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SANITIZE_MAP_CALLS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SANITIZE_MAP_CALLS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SANITIZE_MAP_CALLS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SANITIZE_MAP_CALLS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SANITIZE_MAP_CALLS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "in_crispr_analysis",
                            "type": "map\u003cpath\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "in_antibody_analysis",
                            "type": "map\u003cpath\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "in_rna_analysis",
                            "type": "map\u003cpath\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "in_cloupe_file",
                            "type": "map\u003ccloupe\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "in_metrics_summary",
                            "type": "map\u003cjson\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/_SAMPLE_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS/fork_dimitri-multi/join-ucc6a7a7db3/files/summary.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "in_sample_tsne_plots",
                            "type": "map\u003cjson\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SAMPLE_REPORTER/GENERATE_SAMPLE_TSNE_PLOTS/fork_dimitri-multi/join-ucc6a7a7d8f/files/sample_tsne_plots.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "in_barcode_rank_plots",
                            "type": "map\u003cjson\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "Gene Expression": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_REPORTER/GENERATE_LIBRARY_PLOTS/fork0/chnk0-ucc6a7a7d79/files/Gene Expression_barcode_rank_plot.json"
                            },
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "crispr_analysis",
                            "type": "map\u003cpath\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "antibody_analysis",
                            "type": "map\u003cpath\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "rna_analysis",
                            "type": "map\u003cpath\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "cloupe_file",
                            "type": "map\u003ccloupe\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "metrics_summary",
                            "type": "map\u003cjson\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SANITIZE_MAP_CALLS/fork0/chnk0-ucc6a7a7db5/files/dimitri-multi_summary.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "sample_tsne_plots",
                            "type": "map\u003cjson\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SANITIZE_MAP_CALLS/fork0/chnk0-ucc6a7a7db5/files/dimitri-multi_sample_tsne_plots.json"
                            },
                            "waiting": false
                        },
                        {
                            "id": "barcode_rank_plots",
                            "type": "map\u003cjson\u003e",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "Gene Expression": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SANITIZE_MAP_CALLS/fork0/chnk0-ucc6a7a7db5/files/Gene Expression_Gene Expression_barcode_rank_plot.json"
                            },
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SANITIZE_MAP_CALLS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_REPORTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SANITIZE_MAP_CALLS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SAMPLE_REPORTER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SANITIZE_MAP_CALLS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/multi/sanitize_map_calls"
    },
    {
        "name": "SPLIT_VDJ_INPUTS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SPLIT_VDJ_INPUTS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SPLIT_VDJ_INPUTS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SPLIT_VDJ_INPUTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SPLIT_VDJ_INPUTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SPLIT_VDJ_INPUTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/SPLIT_VDJ_INPUTS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "vdj_inputs",
                            "type": "VdjInputs[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "chain_type": "IG",
                                    "chemistry": "SCVDJ_auto",
                                    "custom_chemistry_def": null,
                                    "denovo": false,
                                    "force_cells": null,
                                    "ground_truth_clonotype_path": null,
                                    "initial_reads": null,
                                    "inner_enrichment_primers": null,
                                    "physical_library_id": "VDJB_1",
                                    "primer_initial_reads": null,
                                    "primers": [
                                        {
                                            "name": "P5",
                                            "seq": "AATGATACGGCGACCACCGAGATCT"
                                        },
                                        {
                                            "name": "P7",
                                            "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                        },
                                        {
                                            "name": "R1",
                                            "seq": "ACACTCTTTCCCTACACGACGCTCTTCCGATCT"
                                        },
                                        {
                                            "name": "R2",
                                            "seq": "GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT"
                                        },
                                        {
                                            "name": "polyA",
                                            "seq": "AAAAAAAAAAAAAAAAAAAA"
                                        },
                                        {
                                            "name": "rt_primer",
                                            "seq": "AAGCAGTGGTATCAACGCAGAGTACAT"
                                        },
                                        {
                                            "name": "spacer",
                                            "seq": "TTTCTTATATGGG"
                                        }
                                    ],
                                    "r1_length": null,
                                    "r2_length": null,
                                    "sample_def": [
                                        {
                                            "fastq_id": "dimitri_BCR",
                                            "fastq_mode": "ILMN_BCL2FASTQ",
                                            "gem_group": 1,
                                            "lanes": null,
                                            "library_type": "VDJ",
                                            "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                            "sample_indices": null,
                                            "sample_names": [
                                                "dimitri_BCR"
                                            ],
                                            "subsample_rate": null,
                                            "target_set": null,
                                            "target_set_name": null
                                        }
                                    ],
                                    "special_genomic_regions": null,
                                    "subsample_rate": null
                                },
                                {
                                    "chain_type": "TR",
                                    "chemistry": "SCVDJ_auto",
                                    "custom_chemistry_def": null,
                                    "denovo": false,
                                    "force_cells": null,
                                    "ground_truth_clonotype_path": null,
                                    "initial_reads": null,
                                    "inner_enrichment_primers": null,
                                    "physical_library_id": "VDJT_1",
                                    "primer_initial_reads": null,
                                    "primers": [
                                        {
                                            "name": "P5",
                                            "seq": "AATGATACGGCGACCACCGAGATCT"
                                        },
                                        {
                                            "name": "P7",
                                            "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                        },
                                        {
                                            "name": "R1",
                                            "seq": "ACACTCTTTCCCTACACGACGCTCTTCCGATCT"
                                        },
                                        {
                                            "name": "R2",
                                            "seq": "GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT"
                                        },
                                        {
                                            "name": "polyA",
                                            "seq": "AAAAAAAAAAAAAAAAAAAA"
                                        },
                                        {
                                            "name": "rt_primer",
                                            "seq": "AAGCAGTGGTATCAACGCAGAGTACAT"
                                        },
                                        {
                                            "name": "spacer",
                                            "seq": "TTTCTTATATGGG"
                                        }
                                    ],
                                    "r1_length": null,
                                    "r2_length": null,
                                    "sample_def": [
                                        {
                                            "fastq_id": "dimitri_TCR",
                                            "fastq_mode": "ILMN_BCL2FASTQ",
                                            "gem_group": 1,
                                            "lanes": null,
                                            "library_type": "VDJ",
                                            "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                            "sample_indices": null,
                                            "sample_names": [
                                                "dimitri_TCR"
                                            ],
                                            "subsample_rate": null,
                                            "target_set": null,
                                            "target_set_name": null
                                        }
                                    ],
                                    "special_genomic_regions": null,
                                    "subsample_rate": null
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "vdj_chemistry_types",
                            "type": "string[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": [
                                "SCVDJ-R2",
                                "SCVDJ-R2"
                            ],
                            "waiting": false
                        },
                        {
                            "id": "vdj_receptors",
                            "type": "string[]",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR.COMBINE_GEM_WELL_CHEMISTRIES",
                            "matchedFork": null,
                            "value": [
                                "IG",
                                "TR"
                            ],
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "vdj_t_input",
                            "type": "VdjInputs",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "chain_type": "TR",
                                "chemistry": "SCVDJ_auto",
                                "custom_chemistry_def": null,
                                "denovo": false,
                                "force_cells": null,
                                "ground_truth_clonotype_path": null,
                                "initial_reads": null,
                                "inner_enrichment_primers": null,
                                "physical_library_id": "VDJT_1",
                                "primer_initial_reads": null,
                                "primers": [
                                    {
                                        "name": "P5",
                                        "seq": "AATGATACGGCGACCACCGAGATCT"
                                    },
                                    {
                                        "name": "P7",
                                        "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                    },
                                    {
                                        "name": "R1",
                                        "seq": "ACACTCTTTCCCTACACGACGCTCTTCCGATCT"
                                    },
                                    {
                                        "name": "R2",
                                        "seq": "GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT"
                                    },
                                    {
                                        "name": "polyA",
                                        "seq": "AAAAAAAAAAAAAAAAAAAA"
                                    },
                                    {
                                        "name": "rt_primer",
                                        "seq": "AAGCAGTGGTATCAACGCAGAGTACAT"
                                    },
                                    {
                                        "name": "spacer",
                                        "seq": "TTTCTTATATGGG"
                                    }
                                ],
                                "r1_length": null,
                                "r2_length": null,
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_TCR",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "VDJ",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_TCR"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "special_genomic_regions": null,
                                "subsample_rate": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_t_chemistry_type",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "SCVDJ-R2",
                            "waiting": false
                        },
                        {
                            "id": "vdj_t_receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "TR",
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_input",
                            "type": "VdjInputs",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": {
                                "chain_type": "IG",
                                "chemistry": "SCVDJ_auto",
                                "custom_chemistry_def": null,
                                "denovo": false,
                                "force_cells": null,
                                "ground_truth_clonotype_path": null,
                                "initial_reads": null,
                                "inner_enrichment_primers": null,
                                "physical_library_id": "VDJB_1",
                                "primer_initial_reads": null,
                                "primers": [
                                    {
                                        "name": "P5",
                                        "seq": "AATGATACGGCGACCACCGAGATCT"
                                    },
                                    {
                                        "name": "P7",
                                        "seq": "CAAGCAGAAGACGGCATACGAGAT"
                                    },
                                    {
                                        "name": "R1",
                                        "seq": "ACACTCTTTCCCTACACGACGCTCTTCCGATCT"
                                    },
                                    {
                                        "name": "R2",
                                        "seq": "GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT"
                                    },
                                    {
                                        "name": "polyA",
                                        "seq": "AAAAAAAAAAAAAAAAAAAA"
                                    },
                                    {
                                        "name": "rt_primer",
                                        "seq": "AAGCAGTGGTATCAACGCAGAGTACAT"
                                    },
                                    {
                                        "name": "spacer",
                                        "seq": "TTTCTTATATGGG"
                                    }
                                ],
                                "r1_length": null,
                                "r2_length": null,
                                "sample_def": [
                                    {
                                        "fastq_id": "dimitri_BCR",
                                        "fastq_mode": "ILMN_BCL2FASTQ",
                                        "gem_group": 1,
                                        "lanes": null,
                                        "library_type": "VDJ",
                                        "read_path": "/scratch/etanis/ST-118/FASTQ/",
                                        "sample_indices": null,
                                        "sample_names": [
                                            "dimitri_BCR"
                                        ],
                                        "subsample_rate": null,
                                        "target_set": null,
                                        "target_set_name": null
                                    }
                                ],
                                "special_genomic_regions": null,
                                "subsample_rate": null
                            },
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_chemistry_type",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "SCVDJ-R2",
                            "waiting": false
                        },
                        {
                            "id": "vdj_b_receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "IG",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/vdj/split_vdj_inputs"
    },
    {
        "name": "STRUCTIFY_PER_SAMPLE_OUTS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "sample_bams",
                            "type": "SampleBamFile[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "bam_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_dimitri-multi.bam",
                                    "bam_index_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_dimitri-multi.bam.bai",
                                    "sample": "dimitri-multi"
                                },
                                {
                                    "bam_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_unassigned.bam",
                                    "bam_index_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_BAM/fork0/join-ucc6a7a7cde/files/pos_sorted_unassigned.bam.bai",
                                    "sample": "unassigned"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "sample_metrics",
                            "type": "SampleMetrics[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "per_barcode_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS/fork0/chnk0-ucc6a7a7cde/files/per_barcode_metrics.csv",
                                    "per_lib_type_metrics": {},
                                    "sample": "dimitri-multi",
                                    "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_COLLATE_PER_SAMPLE_METRICS/fork0/chnk0-ucc6a7a7cde/files/summary.json"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "sample_molecule_infos",
                            "type": "SampleMoleculeInfo[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "h5_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ce2/files/molecule_info_dimitri-multi.h5",
                                    "sample": "dimitri-multi",
                                    "summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO/fork0/chnk0-ucc6a7a7ce2/files/dimitri-multi_summary.json"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "sample_matrices",
                            "type": "SampleMatrices[]",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": [
                                {
                                    "sample": "dimitri-multi",
                                    "matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                                    "matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_feature_barcode_matrix",
                                    "all_genes_matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix.h5",
                                    "all_genes_matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix",
                                    "filtered_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/MULTI_WRITE_PER_SAMPLE_MATRICES/fork0/chnk0-ucc6a7a7cdf/files/dimitri-multi_filtered_barcodes.csv"
                                }
                            ],
                            "waiting": false
                        },
                        {
                            "id": "multi_graph",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/PARSE_MULTI_CONFIG/fork0/chnk0-ucc6a7a7197/files/multi_graph.json",
                            "waiting": false
                        },
                        {
                            "id": "feature_reference",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        },
                        {
                            "id": "target_panel",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": null,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "sample_outs",
                            "type": "map\u003cSampleSlfeOuts\u003e",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": {
                                "dimitri-multi": {
                                    "feature_reference": null,
                                    "target_panel": null,
                                    "sample": "dimitri-multi",
                                    "bam_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_dimitri-multi.bam",
                                    "bam_index_file": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_dimitri-multi.bam.bai",
                                    "molecule_info": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/molecule_info_dimitri-multi.h5",
                                    "matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix.h5",
                                    "all_genes_matrix_h5": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix.h5",
                                    "filtered_barcodes": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_barcodes.csv",
                                    "matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_filtered_feature_barcode_matrix",
                                    "all_genes_matrix_mex": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_all_genes_filtered_feature_barcode_matrix",
                                    "metrics_summary": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_summary.json",
                                    "per_barcode_metrics": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/dimitri-multi_per_barcode_metrics.csv"
                                }
                            },
                            "waiting": false
                        },
                        {
                            "id": "unassigned_alignments",
                            "type": "bam",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_unassigned.bam",
                            "waiting": false
                        },
                        {
                            "id": "unassigned_alignments_index",
                            "type": "bam.bai",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/STRUCTIFY_PER_SAMPLE_OUTS/fork0/chnk0-ucc6a7a7d79/files/pos_sorted_unassigned.bam.bai",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.FULL_COUNT_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS"
            }
        ],
        "stagecodeLang": "Python",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/mro/rna/stages/multi/structify_per_sample_outs"
    },
    {
        "name": "VDJ_B_CLONOTYPE_ASSIGNER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
                            "waiting": false
                        },
                        {
                            "id": "contig_annotations",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "IG",
                            "waiting": false
                        },
                        {
                            "id": "has_no_vdj_ref",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "all_contig_annotations_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd8/files/all_contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "all_contig_annotations_csv",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd8/files/all_contig_annotations.csv",
                            "waiting": false
                        },
                        {
                            "id": "filtered_contig_annotations_csv",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_annotations.csv",
                            "waiting": false
                        },
                        {
                            "id": "clonotypes_csv",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd7/files/clonotypes.csv",
                            "waiting": false
                        },
                        {
                            "id": "consensus_fasta",
                            "type": "fasta",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus.fasta",
                            "waiting": false
                        },
                        {
                            "id": "consensus_fasta_fai",
                            "type": "fasta.fai",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus.fasta.fai",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_fasta",
                            "type": "fasta",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_fasta_fai",
                            "type": "fasta.fai",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta.fai",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_bam",
                            "type": "bam",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.bam",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_bam_bai",
                            "type": "bam.bai",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "consensus_bam",
                            "type": "bam",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd8/files/consensus.bam",
                            "waiting": false
                        },
                        {
                            "id": "consensus_bam_bai",
                            "type": "bam.bai",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd8/files/consensus.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "consensus_annotations_csv",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus_annotations.csv",
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "airr_rearrangement",
                            "type": "tsv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0-ucc6a7a7ce7/files/airr_annotations.tsv",
                            "waiting": false
                        },
                        {
                            "id": "enclone_output",
                            "type": "pb",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/enclone_output.pb",
                            "waiting": false
                        },
                        {
                            "id": "disable_vloupe",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "donor_ref_fa",
                            "type": "fa",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/donor_ref.fa",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CLONOTYPE_ASSIGNER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
                            "waiting": false
                        },
                        {
                            "id": "contig_annotations",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "IG",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "contig_annotations_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "all_contig_annotations_csv",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd8/files/all_contig_annotations.csv",
                            "waiting": false
                        },
                        {
                            "id": "filtered_contig_annotations_csv",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_annotations.csv",
                            "waiting": false
                        },
                        {
                            "id": "clonotypes_csv",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd7/files/clonotypes.csv",
                            "waiting": false
                        },
                        {
                            "id": "consensus_fasta",
                            "type": "fasta",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus.fasta",
                            "waiting": false
                        },
                        {
                            "id": "consensus_fasta_fai",
                            "type": "fasta.fai",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus.fasta.fai",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_fasta",
                            "type": "fasta",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_fasta_fai",
                            "type": "fasta.fai",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta.fai",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_bam",
                            "type": "bam",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.bam",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_bam_bai",
                            "type": "bam.bai",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "consensus_bam",
                            "type": "bam",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd8/files/consensus.bam",
                            "waiting": false
                        },
                        {
                            "id": "consensus_bam_bai",
                            "type": "bam.bai",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd8/files/consensus.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "consensus_annotations_csv",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus_annotations.csv",
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "airr_rearrangement",
                            "type": "tsv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0-ucc6a7a7ce7/files/airr_annotations.tsv",
                            "waiting": false
                        },
                        {
                            "id": "enclone_output",
                            "type": "pb",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/enclone_output.pb",
                            "waiting": false
                        },
                        {
                            "id": "disable_vloupe",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "donor_ref_fa",
                            "type": "fa",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/donor_ref.fa",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CREATE_AIRR_TSV",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "contig_annotations",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_fasta",
                            "type": "fasta",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "airr_annotations",
                            "type": "tsv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0-ucc6a7a7ce7/files/airr_annotations.tsv",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian airr_filter"
    },
    {
        "name": "FILL_CLONOTYPE_INFO",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "contig_annotations",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "enclone_output",
                            "type": "pb",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/enclone_output.pb",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "all_contig_annotations_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian fill_clonotype_info"
    },
    {
        "name": "RUN_ENCLONE",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 64,
                    "__mem_gb": 5,
                    "__vmem_gb": 8
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 64,
                            "__vmem_gb": 8
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
                            "waiting": false
                        },
                        {
                            "id": "contig_annotations",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "IG",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "enclone_output",
                            "type": "pb",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/enclone_output.pb",
                            "waiting": false
                        },
                        {
                            "id": "donor_ref_fa",
                            "type": "fa",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/donor_ref.fa",
                            "waiting": false
                        },
                        {
                            "id": "disable_vloupe",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian assigner"
    },
    {
        "name": "WRITE_ANN_CSV",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "all_contig_annotations_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.json",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "all_contig_annotations_csv",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd8/files/all_contig_annotations.csv",
                            "waiting": false
                        },
                        {
                            "id": "filtered_contig_annotations_csv",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd8/files/filtered_contig_annotations.csv",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian write_ann_csv"
    },
    {
        "name": "WRITE_CLONOTYPE_OUTS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 8,
                    "__vmem_gb": 11
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "enclone_output",
                            "type": "pb",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/enclone_output.pb",
                            "waiting": false
                        },
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "IG",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "clonotypes_csv",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd7/files/clonotypes.csv",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian write_clonotype_outs"
    },
    {
        "name": "WRITE_CONCAT_REF_OUTS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 4,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "all_contig_annotations_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "enclone_output",
                            "type": "pb",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/enclone_output.pb",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "concat_ref_bam",
                            "type": "bam",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.bam",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_bam_bai",
                            "type": "bam.bai",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_fasta",
                            "type": "fasta",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_fasta_fai",
                            "type": "fasta.fai",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd8/files/concat_ref.fasta.fai",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian write_concat_ref_outs"
    },
    {
        "name": "WRITE_CONSENSUS_BAM",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 4,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "all_contig_annotations_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "enclone_output",
                            "type": "pb",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/enclone_output.pb",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "consensus_bam",
                            "type": "bam",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd8/files/consensus.bam",
                            "waiting": false
                        },
                        {
                            "id": "consensus_bam_bai",
                            "type": "bam.bai",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd8/files/consensus.bam.bai",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian write_consensus_bam"
    },
    {
        "name": "WRITE_CONSENSUS_TXT",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 4,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "enclone_output",
                            "type": "pb",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7cce/files/enclone_output.pb",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "consensus_fasta",
                            "type": "fasta",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus.fasta",
                            "waiting": false
                        },
                        {
                            "id": "consensus_fasta_fai",
                            "type": "fasta.fai",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus.fasta.fai",
                            "waiting": false
                        },
                        {
                            "id": "consensus_annotations_csv",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd7/files/consensus_annotations.csv",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian write_consensus_txt"
    },
    {
        "name": "HANDLE_NO_VDJ_REF",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "asm_contig_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_B_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "clonotype_contig_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "has_no_vdj_ref",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "final_contig_annotations",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_B_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd8/files/all_contig_annotations.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian handle_no_ref"
    },
    {
        "name": "VDJ_T_CLONOTYPE_ASSIGNER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
                            "waiting": false
                        },
                        {
                            "id": "contig_annotations",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "TR",
                            "waiting": false
                        },
                        {
                            "id": "has_no_vdj_ref",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "all_contig_annotations_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "all_contig_annotations_csv",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.csv",
                            "waiting": false
                        },
                        {
                            "id": "filtered_contig_annotations_csv",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_annotations.csv",
                            "waiting": false
                        },
                        {
                            "id": "clonotypes_csv",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd5/files/clonotypes.csv",
                            "waiting": false
                        },
                        {
                            "id": "consensus_fasta",
                            "type": "fasta",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus.fasta",
                            "waiting": false
                        },
                        {
                            "id": "consensus_fasta_fai",
                            "type": "fasta.fai",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus.fasta.fai",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_fasta",
                            "type": "fasta",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.fasta",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_fasta_fai",
                            "type": "fasta.fai",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.fasta.fai",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_bam",
                            "type": "bam",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.bam",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_bam_bai",
                            "type": "bam.bai",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "consensus_bam",
                            "type": "bam",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd7/files/consensus.bam",
                            "waiting": false
                        },
                        {
                            "id": "consensus_bam_bai",
                            "type": "bam.bai",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd7/files/consensus.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "consensus_annotations_csv",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus_annotations.csv",
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "airr_rearrangement",
                            "type": "tsv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0-ucc6a7a7cdd/files/airr_annotations.tsv",
                            "waiting": false
                        },
                        {
                            "id": "enclone_output",
                            "type": "pb",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/enclone_output.pb",
                            "waiting": false
                        },
                        {
                            "id": "disable_vloupe",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "donor_ref_fa",
                            "type": "fa",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/donor_ref.fa",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CLONOTYPE_ASSIGNER",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER",
        "type": "pipeline",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": null,
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/fork0/split",
                    "names": []
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/fork0/join",
                    "names": []
                },
                "chunks": [],
                "bindings": {
                    "Argument": [
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
                            "waiting": false
                        },
                        {
                            "id": "contig_annotations",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "TR",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "contig_annotations_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0/chnk0-ucc6a7a7cd5/files/all_contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "all_contig_annotations_csv",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.csv",
                            "waiting": false
                        },
                        {
                            "id": "filtered_contig_annotations_csv",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_annotations.csv",
                            "waiting": false
                        },
                        {
                            "id": "clonotypes_csv",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd5/files/clonotypes.csv",
                            "waiting": false
                        },
                        {
                            "id": "consensus_fasta",
                            "type": "fasta",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus.fasta",
                            "waiting": false
                        },
                        {
                            "id": "consensus_fasta_fai",
                            "type": "fasta.fai",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus.fasta.fai",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_fasta",
                            "type": "fasta",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.fasta",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_fasta_fai",
                            "type": "fasta.fai",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.fasta.fai",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_bam",
                            "type": "bam",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.bam",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_bam_bai",
                            "type": "bam.bai",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "consensus_bam",
                            "type": "bam",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd7/files/consensus.bam",
                            "waiting": false
                        },
                        {
                            "id": "consensus_bam_bai",
                            "type": "bam.bai",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd7/files/consensus.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "consensus_annotations_csv",
                            "type": "csv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus_annotations.csv",
                            "waiting": false
                        },
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "airr_rearrangement",
                            "type": "tsv",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0-ucc6a7a7cdd/files/airr_annotations.tsv",
                            "waiting": false
                        },
                        {
                            "id": "enclone_output",
                            "type": "pb",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/enclone_output.pb",
                            "waiting": false
                        },
                        {
                            "id": "disable_vloupe",
                            "type": "bool",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        },
                        {
                            "id": "donor_ref_fa",
                            "type": "fa",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/donor_ref.fa",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER"
            }
        ],
        "stagecodeLang": "",
        "stagecodeCmd": ""
    },
    {
        "name": "CREATE_AIRR_TSV",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "contig_annotations",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0/chnk0-ucc6a7a7cd5/files/all_contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_fasta",
                            "type": "fasta",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.fasta",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "airr_annotations",
                            "type": "tsv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/CREATE_AIRR_TSV/fork0/chnk0-ucc6a7a7cdd/files/airr_annotations.tsv",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian airr_filter"
    },
    {
        "name": "FILL_CLONOTYPE_INFO",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "contig_annotations",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "enclone_output",
                            "type": "pb",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/enclone_output.pb",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "all_contig_annotations_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0/chnk0-ucc6a7a7cd5/files/all_contig_annotations.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian fill_clonotype_info"
    },
    {
        "name": "RUN_ENCLONE",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 64,
                    "__mem_gb": 5,
                    "__vmem_gb": 8
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 5,
                            "__threads": 64,
                            "__vmem_gb": 8
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "vdj_reference_path",
                            "type": "path",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/references/refdata-cellranger-vdj-GRCh38-alts-ensembl-5.0.0",
                            "waiting": false
                        },
                        {
                            "id": "contig_annotations",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "TR",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "summary",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/summary.json",
                            "waiting": false
                        },
                        {
                            "id": "enclone_output",
                            "type": "pb",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/enclone_output.pb",
                            "waiting": false
                        },
                        {
                            "id": "donor_ref_fa",
                            "type": "fa",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/donor_ref.fa",
                            "waiting": false
                        },
                        {
                            "id": "disable_vloupe",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.PARSE_MULTI_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian assigner"
    },
    {
        "name": "WRITE_ANN_CSV",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "all_contig_annotations_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0/chnk0-ucc6a7a7cd5/files/all_contig_annotations.json",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "all_contig_annotations_csv",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.csv",
                            "waiting": false
                        },
                        {
                            "id": "filtered_contig_annotations_csv",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_ANN_CSV/fork0/chnk0-ucc6a7a7cd7/files/filtered_contig_annotations.csv",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian write_ann_csv"
    },
    {
        "name": "WRITE_CLONOTYPE_OUTS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 8,
                    "__vmem_gb": 11
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 8,
                            "__threads": 1,
                            "__vmem_gb": 11
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "enclone_output",
                            "type": "pb",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/enclone_output.pb",
                            "waiting": false
                        },
                        {
                            "id": "receptor",
                            "type": "string",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "TR",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "clonotypes_csv",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CLONOTYPE_OUTS/fork0/chnk0-ucc6a7a7cd5/files/clonotypes.csv",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.SPLIT_VDJ_INPUTS",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian write_clonotype_outs"
    },
    {
        "name": "WRITE_CONCAT_REF_OUTS",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 4,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "all_contig_annotations_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0/chnk0-ucc6a7a7cd5/files/all_contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "enclone_output",
                            "type": "pb",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/enclone_output.pb",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "concat_ref_bam",
                            "type": "bam",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.bam",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_bam_bai",
                            "type": "bam.bai",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.bam.bai",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_fasta",
                            "type": "fasta",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.fasta",
                            "waiting": false
                        },
                        {
                            "id": "concat_ref_fasta_fai",
                            "type": "fasta.fai",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONCAT_REF_OUTS/fork0/chnk0-ucc6a7a7cd7/files/concat_ref.fasta.fai",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian write_concat_ref_outs"
    },
    {
        "name": "WRITE_CONSENSUS_BAM",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 4,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "all_contig_annotations_json",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0/chnk0-ucc6a7a7cd5/files/all_contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "enclone_output",
                            "type": "pb",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/enclone_output.pb",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "consensus_bam",
                            "type": "bam",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd7/files/consensus.bam",
                            "waiting": false
                        },
                        {
                            "id": "consensus_bam_bai",
                            "type": "bam.bai",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_BAM/fork0/chnk0-ucc6a7a7cd7/files/consensus.bam.bai",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian write_consensus_bam"
    },
    {
        "name": "WRITE_CONSENSUS_TXT",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 4,
                    "__mem_gb": 4,
                    "__vmem_gb": 7
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 4,
                            "__threads": 4,
                            "__vmem_gb": 7
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "enclone_output",
                            "type": "pb",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/RUN_ENCLONE/fork0/chnk0-ucc6a7a7ccd/files/enclone_output.pb",
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "consensus_fasta",
                            "type": "fasta",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus.fasta",
                            "waiting": false
                        },
                        {
                            "id": "consensus_fasta_fai",
                            "type": "fasta.fai",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus.fasta.fai",
                            "waiting": false
                        },
                        {
                            "id": "consensus_annotations_csv",
                            "type": "csv",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/WRITE_CONSENSUS_TXT/fork0/chnk0-ucc6a7a7cd5/files/consensus_annotations.csv",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian write_consensus_txt"
    },
    {
        "name": "HANDLE_NO_VDJ_REF",
        "fqname": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF",
        "type": "stage",
        "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF",
        "state": "complete",
        "metadata": {
            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF",
            "names": []
        },
        "forks": [
            {
                "index": 0,
                "argPermute": null,
                "joinDef": {
                    "__threads": 1,
                    "__mem_gb": 1,
                    "__vmem_gb": 4
                },
                "state": "complete",
                "metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0",
                    "names": [
                        "complete",
                        "invocation",
                        "outs",
                        "vdrkill"
                    ]
                },
                "split_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/split",
                    "names": [
                        "args",
                        "complete",
                        "stage_defs"
                    ]
                },
                "join_metadata": {
                    "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/join",
                    "names": [
                        "args",
                        "chunk_defs",
                        "complete",
                        "outs"
                    ]
                },
                "chunks": [
                    {
                        "index": 0,
                        "chunkDef": {
                            "__mem_gb": 1,
                            "__threads": 1,
                            "__vmem_gb": 4
                        },
                        "state": "complete",
                        "metadata": {
                            "path": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0",
                            "names": [
                                "args",
                                "complete",
                                "jobinfo",
                                "log",
                                "outs",
                                "stderr",
                                "stdout"
                            ]
                        }
                    }
                ],
                "bindings": {
                    "Argument": [
                        {
                            "id": "asm_contig_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/VDJ_T_GEM_WELL_PROCESSOR/SC_VDJ_CONTIG_ASSEMBLER/HANDLE_GEX_CELLS/fork0/chnk0-ucc6a7a7ccd/files/contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "clonotype_contig_json",
                            "type": "json",
                            "mode": "",
                            "node": null,
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/CLONOTYPE_ASSIGNER/FILL_CLONOTYPE_INFO/fork0/chnk0-ucc6a7a7cd5/files/all_contig_annotations.json",
                            "waiting": false
                        },
                        {
                            "id": "has_no_vdj_ref",
                            "type": "bool",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG",
                            "matchedFork": null,
                            "value": false,
                            "waiting": false
                        }
                    ],
                    "Return": [
                        {
                            "id": "final_contig_annotations",
                            "type": "json",
                            "mode": "reference",
                            "node": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF",
                            "matchedFork": null,
                            "value": "/scratch/etanis/ST-118/multi/dimitri-multi/SC_MULTI_CS/SC_MULTI_CORE/VDJ_T_CLONOTYPE_ASSIGNER/HANDLE_NO_VDJ_REF/fork0/chnk0-ucc6a7a7cd7/files/all_contig_annotations.json",
                            "waiting": false
                        }
                    ]
                }
            }
        ],
        "edges": [
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF"
            },
            {
                "from": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER",
                "to": "ID.dimitri-multi.SC_MULTI_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF"
            }
        ],
        "stagecodeLang": "Compiled",
        "stagecodeCmd": "/scratch/etanis/software/cellranger-6.1.2/lib/bin/cr_vdj martian handle_no_ref"
    }
]