Raw file	Experiment	Enzyme	Enzyme mode	Enzyme first search	Enzyme mode first search	Use enzyme first search	Variable modifications	Variable modifications first search	Use variable modifications first search	Multiplicity	Max. missed cleavages	Labels0	LC-MS run type	Time-dependent recalibration	MS	MS/MS	MS/MS Submitted	MS/MS Submitted (SIL)	MS/MS Submitted (ISO)	MS/MS Submitted (PEAK)	MS/MS Identified	MS/MS Identified (SIL)	MS/MS Identified (ISO)	MS/MS Identified (PEAK)	MS/MS Identified [%]	MS/MS Identified (SIL) [%]	MS/MS Identified (ISO) [%]	MS/MS Identified (PEAK) [%]	Peptide Sequences Identified	Peaks	Peaks Sequenced	Peaks Sequenced [%]	Peaks Repeatedly Sequenced	Peaks Repeatedly Sequenced [%]	Isotope Patterns	Isotope Patterns Sequenced	Isotope Patterns Sequenced (z>1)	Isotope Patterns Sequenced [%]	Isotope Patterns Sequenced (z>1) [%]	Isotope Patterns Repeatedly Sequenced	Isotope Patterns Repeatedly Sequenced [%]	Recalibrated	Av. Absolute Mass Deviation [ppm]	Mass Standard Deviation [ppm]	Av. Absolute Mass Deviation [mDa]	Mass Standard Deviation [mDa]	Label free norm param
20150910_Q1_SA_NiHu_Masterprac_group13_B	g13_MTA2	Trypsin/P	Specific			False	Acetyl (Protein N-term);Oxidation (M)		False	1	2		Standard		13783	76587	136380	16788	0	119592	3109	3061	0	48	2.28	18.23	NaN	0.04	2594	1337206	43669	3.27	921	2.11	57636	14285	12671	24.78	33.49	2288	16.02	+	0.24413	0.35914	0.1524	0.23858	
20150910_Q1_SA_NiHu_Masterprac_group13_C	g13_con	Trypsin/P	Specific			False	Acetyl (Protein N-term);Oxidation (M)		False	1	2		Standard		13677	74802	130962	18640	0	112322	3806	3747	0	59	2.91	20.1	NaN	0.05	3189	1211141	40858	3.37	941	2.3	59137	15739	14118	26.61	34.65	2676	17	+	0.25528	0.37986	0.15916	0.26839	
20150910_Q1_SA_NiHu_Masterprac_group15_B	g15_MTA2	Trypsin/P	Specific			False	Acetyl (Protein N-term);Oxidation (M)		False	1	2		Standard		13428	79555	132534	26574	0	105960	6805	6649	0	156	5.13	25.02	NaN	0.15	5717	1330242	50743	3.81	1136	2.24	79053	22744	21114	28.77	34.86	3524	15.49	+	0.2329	0.34033	0.14132	0.2176	
20150910_Q1_SA_NiHu_Masterprac_group15_C	g15_con	Trypsin/P	Specific			False	Acetyl (Protein N-term);Oxidation (M)		False	1	2		Standard		13792	72579	126663	18491	0	108172	3586	3497	0	89	2.83	18.91	NaN	0.08	3025	1143050	39821	3.48	806	2.02	70124	16039	14174	22.87	29.6	2274	14.18	+	0.2457	0.35472	0.15028	0.23003	
20150910_Q1_SA_NiHu_Masterprac_group10_B	g10_MTA2	Trypsin/P	Specific			False	Acetyl (Protein N-term);Oxidation (M)		False	1	2		Standard		13870	76108	131553	20661	0	110892	4810	4710	0	100	3.66	22.8	NaN	0.09	4095	1167047	42585	3.65	916	2.15	61139	17546	16024	28.7	37.94	2868	16.35	+	0.24148	0.35703	0.15382	0.24238	
20150910_Q1_SA_NiHu_Masterprac_group10_C	g10_con	Trypsin/P	Specific			False	Acetyl (Protein N-term);Oxidation (M)		False	1	2		Standard		13910	70213	123172	17250	0	105922	3824	3736	0	88	3.1	21.66	NaN	0.08	2963	1319962	40493	3.07	853	2.11	62039	14794	13283	23.85	30.71	2237	15.12	+	0.24388	0.36996	0.15277	0.24121	
g10_con																													2963																		
g10_MTA2																													4095																		
g13_con																													3189																		
g13_MTA2																													2594																		
g15_con																													3025																		
g15_MTA2																													5717																		
Total															82460	449844	781264	118404	0	662860	25940	25400	0	540	3.32	21.45	NaN	0.08	9036	7508648					389128	101147	91384	25.99	33.53	15867	15.69		0.24252	0.35812	0.15052	0.23793