Sequence Modifications Mass Mass Fractional Part Protein Groups Proteins Gene Names Protein Names Unique (Groups) Unique (Proteins) Acetyl (Protein N-term) Oxidation (M) Missed cleavages Identification type g10_con Identification type g10_MTA2 Identification type g13_con Identification type g13_MTA2 Identification type g15_con Identification type g15_MTA2 Experiment g10_con Experiment g10_MTA2 Experiment g13_con Experiment g13_MTA2 Experiment g15_con Experiment g15_MTA2 Retention time Calibrated retention time Charges PEP MS/MS count MS/MS scan number Raw file Score Delta score Intensity Intensity g10_con Intensity g10_MTA2 Intensity g13_con Intensity g13_MTA2 Intensity g15_con Intensity g15_MTA2 Reverse Potential contaminant id Protein group IDs Peptide ID Evidence IDs MS/MS IDs Best MS/MS Oxidation (M) site IDs MS/MS Count AAAAAAAAAPAAAATAPTTAATTAATAAQ Unmodified 2367.203 0.2030165 903 P37108;H0YLW0 SRP14 Signal recognition particle 14 kDa protein yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 2 2 2 132.33 121.61 2;3 7.2355E-77 17 84176 20150910_Q1_SA_NiHu_Masterprac_group10_B 110.89 94.271 2503400000 484120000 446850000 600310000 341240000 103390000 527450000 0 903 0 0;1;2;3;4;5;6;7;8;9;10;11;12;13 0;1;2;3;4;5;6;7;8;9;10;11;12;13;14;15;16 13 17 AAAAAAAAAVSR Unmodified 999.54614 0.54614213 677 Q96JP5-2;H9KV86;Q96JP5 ZFP91 E3 ubiquitin-protein ligase ZFP91 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 62.782 56.737 2 0.0018566 5 40113 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.169 57.726 13653000 1122400 909770 1038800 559980 3730900 6290900 1 677 1 14;15;16;17;18;19;20 17;18;19;20;21 19 5 AAAAAAALQAK Unmodified 955.54508 0.5450795 392 E7EWF1;P36578;H3BU31;H3BM89 RPL4 60S ribosomal protein L4 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 61.864 55.087 2 6.7664E-09 6 39221 20150910_Q1_SA_NiHu_Masterprac_group15_B 112.71 53.896 20922000 2471500 4119500 6347200 1728300 1300200 4955600 2 392 2 21;22;23;24;25;26 22;23;24;25;26;27 24 4 AAAAAAAPSGGGGGGEEER Acetyl (Protein N-term) 1626.7234 0.72339081 953 P51608-2 MECP2 Methyl-CpG-binding protein 2 yes yes 1 0 0 By matching By matching By matching By matching By MS/MS By matching 1 85.252 69.411 2 0.037372 1 53651 20150910_Q1_SA_NiHu_Masterprac_group15_C 41.422 21.039 0 0 0 0 0 0 0 3 953 3 27 28 28 1 AAAAAETPEVLRECGCK Acetyl (Protein N-term) 1873.8662 0.866232 1561 Q9NXW9-2;Q9NXW9 ALKBH4 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 4 yes no 1 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 130.92 130.62 2 8.4116E-133 1 83714 20150910_Q1_SA_NiHu_Masterprac_group10_B 148.7 135.14 5990300 0 4388300 0 1602100 0 0 4 1561 4 28;29 29 29 1 AAAAAWEEPSSGNGTAR Unmodified 1644.7492 0.74921163 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 89.002 80.222 2;3 4.5456E-14 7 55108 20150910_Q1_SA_NiHu_Masterprac_group15_B 100.43 82.013 187610000 13176000 0 19691000 11523000 46568000 96651000 5 1575 5 30;31;32;33;34;35;36 30;31;32;33;34;35;36 32 7 AAAAAWEEPSSGNGTARAGPR Unmodified 2025.9617 0.96166402 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 88.243 80.565 3 0.00066295 4 55693 20150910_Q1_SA_NiHu_Masterprac_group10_C 54.768 41.343 12480000 2812700 2857500 1848900 1017100 1831800 2111900 6 1575 6 37;38;39;40;41;42 37;38;39;40 40 4 AAAAAWEEPSSGNGTARAGPRK Unmodified 2154.0566 0.056627037 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 74.267 66.456 3;4 0.0003161 9 51967 20150910_Q1_SA_NiHu_Masterprac_group15_C 58.712 45.345 117730000 21267000 12789000 30412000 21608000 18403000 13256000 7 1575 7 43;44;45;46;47;48;49;50;51;52;53 41;42;43;44;45;46;47;48;49 47 9 AAAADSFSGGPAGVRLPRSPPLK Acetyl (Protein N-term) 2263.2073 0.20731402 1378 Q96E14;I3L2E0 RMI2 RecQ-mediated genome instability protein 2 yes no 1 0 2 By matching By MS/MS By matching By matching By matching By matching 1 133.2 132.6 3 0.00097221 1 86236 20150910_Q1_SA_NiHu_Masterprac_group10_B 52.814 34.115 14925000 0 14925000 0 0 0 0 8 1378 8 54 50 50 1 AAAAPAGGNPEQRLDYER Unmodified 1884.9078 0.90783753 1218 Q68DK7 MSL1 Male-specific lethal 1 homolog yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 92.836 85.007 3 0.0095129 2 58565 20150910_Q1_SA_NiHu_Masterprac_group10_C 42.52 30.157 22815000 3230200 3914400 3137800 1042500 3807800 7682700 9 1218 9 55;56;57;58;59;60 51;52 52 2 AAAAPDSRVSEEENLK Acetyl (Protein N-term) 1727.8326 0.83260691 1644 Q9Y3B9 RRP15 RRP15-like protein yes yes 1 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 99.774 92.113 2 7.4772E-164 6 62961 20150910_Q1_SA_NiHu_Masterprac_group15_B 158.65 122.55 38370000 0 6954200 5823400 4229100 9094400 12269000 10 1644 10 61;62;63;64;65 53;54;55;56;57;58 55 6 AAAATGGTGPGAGIGAATGTGGSSEPSACSDHPIPGCSLKEEEK Unmodified 4067.8437 0.84366524 884 P28356 HOXD9 Homeobox protein Hox-D9 yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 129.35 112.73 4 0.00053927 2 75437 20150910_Q1_SA_NiHu_Masterprac_group10_C 19.941 18.67 3793200 3025900 0 0 0 767370 0 11 884 11 66;67 59;60 60 2 AAADAEAVPARGEPQQDCCVK Acetyl (Protein N-term) 2284.0212 0.021229087 1507 Q9H9B1-3;Q9H9B1;Q9H9B1-4 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 1 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 102.61 94.812 3 0.0010034 3 68858 20150910_Q1_SA_NiHu_Masterprac_group15_C 54.764 47.272 14860000 0 4139800 2906800 1420000 2142700 4250800 12 1507 12 68;69;70;71;72 61;62;63 63 1 AAAEALSFTK Unmodified 1007.5288 0.52876073 1415 Q96QE3 ATAD5 ATPase family AAA domain-containing protein 5 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 106.05 96.3 2 0.0087186 1 64474 20150910_Q1_SA_NiHu_Masterprac_group10_B 79.659 20.678 11027000 0 8525700 2501200 0 0 0 13 1415 13 73;74 64 64 1 AAAEQAISVR Unmodified 1014.5458 0.54580778 1030 Q01780;Q01780-2 EXOSC10 Exosome component 10 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 71.735 64.556 2 1.3004E-23 5 50481 20150910_Q1_SA_NiHu_Masterprac_group15_C 125.74 53.13 13745000 0 1927700 2718000 820100 3199800 5079000 14 1030 14 75;76;77;78;79 65;66;67;68;69 68 5 AAAEQAISVRQQVVLENAAKK Unmodified 2223.2335 0.23352877 1030 Q01780;Q01780-2 EXOSC10 Exosome component 10 yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 2 116.74 108.79 3;4 2.3543E-05 6 71261 20150910_Q1_SA_NiHu_Masterprac_group13_B 61.015 47.289 19840000 0 3836300 7725700 1512200 1216500 5548800 15 1030 15 80;81;82;83;84;85;86;87 70;71;72;73;74;75 70 5 AAAGGGGGGAAAAGR Acetyl (Protein N-term) 1112.5323 0.53228298 1605 Q9UL25 RAB21 Ras-related protein Rab-21 yes yes 1 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 40.404 38.772 2 0.00028599 2 27321 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.891 59.8 952730 0 310910 0 0 0 641820 16 1605 16 88;89 76;77 76 2 AAAGGGGGGAAAAGRAYSFK Acetyl (Protein N-term) 1708.8281 0.82813065 1605 Q9UL25 RAB21 Ras-related protein Rab-21 yes yes 1 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 109.33 101.81 2 0.00020092 1 67367 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.105 51.956 4376800 0 1113800 1008000 0 0 2255100 17 1605 17 90;91;92 78 78 1 AAAGPSTRASSAAAAAALSR Acetyl (Protein N-term) 1798.9286 0.92857298 1318 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 yes yes 1 0 1 By MS/MS By matching By matching By matching By matching By matching 1 130.64 114.95 3 0.0020937 1 76264 20150910_Q1_SA_NiHu_Masterprac_group10_C 71.148 53.19 4217800 4217800 0 0 0 0 0 18 1318 18 93 79 79 1 AAAGQESEGPAVGPPQPLGK Unmodified 1859.9377 0.93774068 694 O14497-2;O14497 ARID1A AT-rich interactive domain-containing protein 1A yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 2 1 1 1 110.45 103.99 2 0.0015047 3 70113 20150910_Q1_SA_NiHu_Masterprac_group10_C 52.185 39.582 6810800 916270 1134200 1401600 607410 0 2751300 19 694 19 94;95;96;97;98;99 80;81;82 82 3 AAAGWRDGSGQEK Acetyl (Protein N-term) 1373.6324 0.63239096 192 E9PQK5;E9PQC5;P62070;B7Z5Z2 RRAS2 Ras-related protein R-Ras2 yes no 1 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 72.927 65.708 2 0.0020704 2 45904 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.083 46.316 5281900 0 722820 1009500 463030 563310 2523200 20 192 20 100;101;102;103;104 83;84 84 2 AAAMDVDTPSGTNSGAGK Acetyl (Protein N-term) 1690.7468 0.74682837 996 P62877 RBX1 E3 ubiquitin-protein ligase RBX1;E3 ubiquitin-protein ligase RBX1, N-terminally processed yes yes 1 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 110.9 100.37 2 0.00091761 1 68388 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.782 44.683 1812000 0 0 391260 0 0 1420700 21 996 21 105;106 85 85 1 AAAMDVDTPSGTNSGAGKK Acetyl (Protein N-term) 1818.8418 0.84179138 996 P62877 RBX1 E3 ubiquitin-protein ligase RBX1;E3 ubiquitin-protein ligase RBX1, N-terminally processed yes yes 1 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 96.409 87.423 2 0.00032212 2 66047 20150910_Q1_SA_NiHu_Masterprac_group13_C 71.402 59.484 17914000 0 4631200 6818000 2855700 3608700 0 22 996 22 107;108;109;110 86;87 87 2 AAAPAPVSEAVCR Unmodified 1297.6449 0.6448699 375 G5E9D3;P20810-5;E7ESM9;P20810-7;P20810-6;B7Z468;H0Y7F0;P20810-3;E9PDE4;E7ES10;P20810-4;E9PCH5;G5E946;B7Z574;P20810-2;P20810;H0Y9H6;E7EVY3;E7EQ12;E7EQA0;H0YD33 CAST Calpastatin yes no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 94.037 86.174 2 0.00073145 4 58914 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.19 80.955 10267000 147680 1468400 834650 1103900 3103500 3609300 23 375 23 111;112;113;114;115;116 88;89;90;91 90 4 AAAPQAPGR Acetyl (Protein N-term) 879.45626 0.45626449 1009 Q5VUC9;Q5VUC3;P78345 RPP38 Ribonuclease P protein subunit p38 yes no 1 0 0 By matching By matching By matching By matching By matching By MS/MS 1 56.831 55.777 2 0.018344 1 39388 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.59 35.459 0 0 0 0 0 0 0 24 1009 24 117 92 92 1 AAAPQAPGRGSLRK Acetyl (Protein N-term) 1420.7899 0.78989465 1009 Q5VUC9;Q5VUC3;P78345 RPP38 Ribonuclease P protein subunit p38 yes no 1 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 68.041 60.831 3 0.027403 1 42748 20150910_Q1_SA_NiHu_Masterprac_group10_B 42.629 20.958 35396000 4699100 6698200 8261500 238550 8286100 7212400 25 1009 25 118;119;120;121;122;123 93 93 1 AAAPSEDPWQAVK Unmodified 1368.6674 0.66737948 1404 Q96L73-2;Q96L73-3;Q96L73 NSD1 Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 119.07 116.33 2 0.012023 2 75331 20150910_Q1_SA_NiHu_Masterprac_group10_B 53.448 35.615 4076800 0 1863300 0 0 0 2213600 26 1404 26 124;125 94;95 95 2 AAAQQLGEVVK Unmodified 1112.619 0.61897272 700 O14981 BTAF1 TATA-binding protein-associated factor 172 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 88.161 86.305 2 0.0030617 1 59161 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.479 53.915 837980 0 0 0 0 0 837980 27 700 27 126 96 96 1 AAASGYTDLREK Acetyl (Protein N-term) 1322.6466 0.64664404 1227 Q6P6C2-2;Q6P6C2 ALKBH5 RNA demethylase ALKBH5 yes no 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 100.83 91.158 2 7.4548E-13 6 62284 20150910_Q1_SA_NiHu_Masterprac_group15_B 112.64 87.577 20463000 1816900 3626100 3682400 0 3474500 7863300 28 1227 28 127;128;129;130;131;132 97;98;99;100;101;102 99 6 AAASGYTDLREKLK Acetyl (Protein N-term) 1563.8257 0.82567103 1227 Q6P6C2-2;Q6P6C2 ALKBH5 RNA demethylase ALKBH5 yes no 1 0 2 By MS/MS By matching By matching By matching By matching By matching 1 131.41 115.72 3 0.0031658 1 77028 20150910_Q1_SA_NiHu_Masterprac_group10_C 61.03 40.223 6975800 6975800 0 0 0 0 0 29 1227 29 133 103 103 1 AAATGAVAASAASGQAEGK Acetyl (Protein N-term) 1629.7958 0.79582747 1554 Q9NWH9;H7BXE3;H0YL55;H0YLW7;H0YMW8;H0YNF3;H0YMR6;H0YLE6 SLTM SAFB-like transcription modulator yes no 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 114.77 103.98 2 2.7877E-06 5 73730 20150910_Q1_SA_NiHu_Masterprac_group15_C 85.087 68.737 26808000 6915200 5611400 6590600 3765000 3925600 0 30 1554 30 134;135;136;137;138;139;140;141 104;105;106;107;108 106 4 AAATGAVAASAASGQAEGKK Acetyl (Protein N-term) 1757.8908 0.89079049 1554 Q9NWH9;H7BXE3;H0YL55;H0YLW7;H0YMW8;H0YNF3;H0YMR6;H0YLE6 SLTM SAFB-like transcription modulator yes no 1 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 103.43 93.806 2 0.0008547 2 62954 20150910_Q1_SA_NiHu_Masterprac_group10_B 56.719 46.344 8244200 0 1790100 1146700 0 886210 4421200 31 1554 31 142;143;144;145 109;110 110 2 AAATGDPGLSK Acetyl (Protein N-term) 1028.5138 0.51383895 404 E9PB95;O95352-2;O95352;C9JGL2;F8WDY9;C9JNU2;C9JKA3;C9JE55;C9J415;C9JFF4 ATG7 Ubiquitin-like modifier-activating enzyme ATG7 yes no 1 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 74.12 69.358 2 0.030197 1 48427 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.68 27.759 682250 174360 0 0 0 0 507880 32 404 32 146;147 111 111 1 AAAVAVAAASRR Acetyl (Protein N-term) 1154.652 0.65200419 1254 Q7Z5L9-2;Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 yes no 1 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 123.38 121.56 2 0.00024281 2 78105 20150910_Q1_SA_NiHu_Masterprac_group10_B 96.229 53.894 6526700 0 2855400 0 779540 0 2891800 33 1254 33 148;149;150 112;113 113 2 AAAYSAQVQPVDGATR Unmodified 1603.7954 0.79543354 1499 Q9H7E9;Q9H7E9-2 C8orf33 UPF0488 protein C8orf33 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 92.388 86.372 2 0.0084668 3 58939 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.249 46.249 6286900 998120 424600 0 446650 2414000 2003500 34 1499 34 151;152;153;154;155 114;115;116 115 2 AAAYSAQVQPVDGATRK Unmodified 1731.8904 0.89039656 1499 Q9H7E9;Q9H7E9-2 C8orf33 UPF0488 protein C8orf33 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 80.877 73.333 3 0.00063287 2 50746 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.833 62.103 8655900 1069200 386880 725090 919210 3416000 2139500 35 1499 35 156;157;158;159;160;161 117;118 117 2 AAAYSAQVQPVDGATRKK Unmodified 1859.9854 0.98535957 1499 Q9H7E9;Q9H7E9-2 C8orf33 UPF0488 protein C8orf33 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 70.88 62.709 3 0.028547 1 43773 20150910_Q1_SA_NiHu_Masterprac_group13_B 42.708 24.841 4688400 861510 0 632340 728840 1473900 991780 36 1499 36 162;163;164;165;166 119 119 1 AADEVAGGARK Acetyl (Protein N-term) 1085.5465 0.54653606 1234 Q6STE5 SMARCD3 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 yes yes 1 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 54.2 48.042 2 0.010202 2 36105 20150910_Q1_SA_NiHu_Masterprac_group10_C 67.385 17.032 5830200 621790 678980 1540800 785840 1045900 1156800 37 1234 37 167;168;169;170;171;172 120;121 121 2 AADISESSGADCKGDPR Acetyl (Protein N-term) 1776.7585 0.75845568 544 F8VVL1;O43583 DENR Density-regulated protein yes no 1 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 81.46 74.1 2 0.0024745 1 50979 20150910_Q1_SA_NiHu_Masterprac_group13_B 56.121 47.587 9606400 0 1124800 1749200 2374100 2200300 2158000 38 544 38 173;174;175;176;177 122 122 1 AADISESSGADCKGDPRNSAK Acetyl (Protein N-term) 2176.9655 0.96548835 544 F8VVL1;O43583 DENR Density-regulated protein yes no 1 0 2 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 77.608 69.211 3 3.2778E-05 3 55122 20150910_Q1_SA_NiHu_Masterprac_group13_C 60.093 60.093 32670000 0 0 8107200 8303000 6854800 9404800 39 544 39 178;179;180;181 123;124;125 123 3 AADISLDNLVEGKRK Unmodified 1627.8893 0.88933392 1063 Q12888;Q12888-2;A6NNK5;F8VY86;H7BZY0 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 129.62 124.66 4 0.0035826 1 84293 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.335 29.887 7343300 0 0 0 0 0 7343300 40 1063 40 182 126 126 1 AADLLAVHAVK Unmodified 1106.6448 0.64479354 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 107.63 101.68 2 3.0955E-05 2 69496 20150910_Q1_SA_NiHu_Masterprac_group15_B 102.95 81.174 2173300 195950 935570 0 0 0 1041800 41 1325 41 183;184;185 127;128 127 2 AADQFDIYSSQQSK Unmodified 1586.7213 0.72126554 1256 Q7Z6I8;H0YAE0;Q7Z6I8-2 C5orf24 UPF0461 protein C5orf24 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 115.84 104.14 2 0.0041826 1 71038 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.079 46.82 2555600 190520 0 0 0 326730 2038400 42 1256 42 186;187;188 129 129 1 AADRLEQELLRDTVK Unmodified 1755.9479 0.94791144 679 Q6PK04;I3L0U5 CCDC137 Coiled-coil domain-containing protein 137 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 132.26 132.26 4 0.0015012 2 85250 20150910_Q1_SA_NiHu_Masterprac_group13_B 68.171 38.808 2621500 0 0 0 2621500 0 0 43 679 43 189 130;131 131 2 AADSDDGAVSAPAASDGGVSK Unmodified 1846.8181 0.81807905 1389 Q96GM8 TOE1 Target of EGR1 protein 1 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 1 2 2 3 3 77.135 69.149 2;3 5.5918E-92 7 49571 20150910_Q1_SA_NiHu_Masterprac_group10_C 130.05 121.94 76308000 12249000 663160 21182000 5686500 10012000 26515000 44 1389 44 190;191;192;193;194;195;196;197;198;199;200;201;202 132;133;134;135;136;137;138 138 7 AADSDDGAVSAPAASDGGVSK Acetyl (Protein N-term) 1888.8286 0.82864374 1389 Q96GM8 TOE1 Target of EGR1 protein 1 yes yes 1 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 98.55 88.842 2 3.5319E-06 2 61444 20150910_Q1_SA_NiHu_Masterprac_group10_C 67.396 58.796 4448900 1828200 0 1696000 0 0 924730 45 1389 44 203;204;205 139;140 140 2 AADSICDGDLVDSQIR Unmodified 1733.789 0.78902753 896 P35251-2;P35251 RFC1 Replication factor C subunit 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 131.02 130.72 2 7.9421E-05 1 83810 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.376 75.376 5628900 0 3542600 0 2086300 0 0 46 896 45 206;207 141 141 0 AAEAFLRQQQAAPNLRK Unmodified 1911.0439 0.043877506 1113 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 2 102.73 94.554 3 0.011138 2 64707 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.136 52.965 5369300 927400 1102700 0 0 1175400 2163800 47 1113 46 208;209;210;211;212 142;143 143 2 AAEESASQIQSSAQR Unmodified 1561.7332 0.73322721 1091 Q13751 LAMB3 Laminin subunit beta-3 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 57.604 56.55 2 0.00267 1 39899 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.723 42.925 1144200 0 0 0 0 0 1144200 48 1091 47 213 144 144 1 AAEGVSAADMAK Unmodified 1119.523 0.52302343 422 E9PDD9;Q9NW13 RBM28 RNA-binding protein 28 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 71.671 63.156 2 0.0019375 6 44205 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.44 58.616 13132000 2761500 1556600 1523500 1373000 3225500 2691800 49 422 48 214;215;216;217;218;219;220;221 145;146;147;148;149;150 147 6 AAEIASSDSANVSSRGGK Unmodified 1705.8231 0.82310485 915 P42338 PIK3CB Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 53.112 48.369 3 0.005056 1 34414 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.892 26.656 2936000 292350 767010 710980 385360 0 780340 50 915 49 222;223;224;225;226 151 151 1 AAEISAMLK Unmodified 932.5001 0.50010314 1428 Q99575;E5RK39 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 117.03 109.45 2 0.011969 3 74984 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.287 45.526 11734000 572480 3725500 0 1830900 2260300 3344600 51 1428 50 227;228;229;230;231 152;153;154 153 3 AAELVEAK Acetyl (Protein N-term) 871.4651 0.46509784 1295 Q8N2W9 PIAS4 E3 SUMO-protein ligase PIAS4 yes yes 1 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 115.27 110.97 1;2 0.0016314 5 75613 20150910_Q1_SA_NiHu_Masterprac_group15_B 113.41 76.711 12066000 0 2126500 1301700 484370 0 8153100 52 1295 51 232;233;234;235;236;237;238;239 155;156;157;158;159 158 5 AAESHWGLPVQK Unmodified 1321.6779 0.67788459 1211 Q5VYV7 SLX4IP Protein SLX4IP yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 106.25 102.79 3 0.032229 1 70261 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.691 29.623 0 0 0 0 0 0 0 53 1211 52 240 160 160 1 AAESVSKPDVSEEAPGPSK Unmodified 1883.9113 0.91125116 38 Q9BY42;A8MSH5;A2A2L5 RTFDC1 Protein RTF2 homolog yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 79.67 72.29 3 0.00046343 4 50336 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.924 50.297 7670000 0 1787700 997030 752940 1663700 2468600 54 38 53 241;242;243;244;245 161;162;163;164 164 4 AAESVSKPDVSEEAPGPSKVK Unmodified 2111.0746 0.074628091 38 Q9BY42;A8MSH5;A2A2L5 RTFDC1 Protein RTF2 homolog yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 2 2 2 81.435 75.227 3;4 4.4651E-91 8 52924 20150910_Q1_SA_NiHu_Masterprac_group10_C 128.66 128.66 157480000 12594000 63582000 15385000 19374000 30423000 16123000 55 38 54 246;247;248;249;250;251;252;253;254;255;256 165;166;167;168;169;170;171;172 172 7 AAEVLPSAR Acetyl (Protein N-term) 954.51345 0.51344502 1475 Q9GZS1-2;B4DW33 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes no 1 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 2 120.32 114.11 2 0.00366 3 77481 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.665 52.026 14376000 4813200 0 0 1955100 0 7607900 56 1475 55 257;258;259;260 173;174;175 174 3 AAFGGSGGRGSSSGGGYSSGSSSYGSGGR Unmodified 2500.0599 0.059934093 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 72.587 65.209 3 5.6874E-30 6 45287 20150910_Q1_SA_NiHu_Masterprac_group13_B 85.925 82.171 44530000 710790 4773700 15168000 5176700 2319200 16381000 + 57 302 56 261;262;263;264;265;266 176;177;178;179;180;181 177 6 AAFGGSGGRGSSSGGGYSSGSSSYGSGGRQSGSR Unmodified 3015.3051 0.30514318 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 64.369 57.393 4 0.00025464 2 39962 20150910_Q1_SA_NiHu_Masterprac_group13_B 29.822 25.517 37090000 983180 3067600 16826000 7822800 2287900 6101800 + 58 302 57 267;268;269;270;271;272 182;183 182 2 AAFGISDSYVDGSSFDPQRR Unmodified 2174.0029 0.0028601316 1623 Q9UQ35;Q9UQ35-2;I3L2L6;I3L182;Q9UQ39;I3L4D8;I3L1C0;I3L1I8;Q9UQ35-3 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 133.22 123.99 3 2.599E-40 2 86205 20150910_Q1_SA_NiHu_Masterprac_group10_B 112.96 92.1 73689000 0 48915000 0 0 24774000 0 59 1623 58 273;274 184;185 185 2 AAFTECCQAADK Unmodified 1370.5595 0.55948529 293 P02768;CON__P02768-1;E7ESU5;H0YA55;D6RHD5;B7WNR0 ALB Serum albumin yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 74.202 59.014 2 0.011764 1 48078 20150910_Q1_SA_NiHu_Masterprac_group13_C 57.52 40.498 580790 0 0 580790 0 0 0 + 60 293 59 275 186 186 1 AAGEPIKEGDNDYFTCITK Unmodified 2127.9783 0.97828486 1426 Q99543;Q99543-2;H7C3L7;C9IZ83;F5H621;F2Z3N9 DNAJC2 DnaJ homolog subfamily C member 2 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 130.93 130.63 3 8.5079E-07 1 83936 20150910_Q1_SA_NiHu_Masterprac_group13_B 88.565 57.99 16023000 0 10462000 0 5560800 0 0 61 1426 60 276;277 187 187 1 AAGEVKALDDFYK Unmodified 1425.714 0.71399532 1443 Q9BRX2 PELO Protein pelota homolog yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 2 129.86 122.73 2;3 1.6483E-34 4 82413 20150910_Q1_SA_NiHu_Masterprac_group13_C 121.21 90.35 27845000 0 1899100 6975700 0 0 18971000 62 1443 61 278;279;280;281 188;189;190;191 188 3 AAGNPGSLAAPIDHKPCSAPLEPK Unmodified 2397.2111 0.21107877 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 3 1 120.27 109.94 3;4 1.4859E-07 8 77340 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.706 50.42 81227000 11783000 10785000 6981800 4765900 32184000 14727000 63 1109 62 282;283;284;285;286;287;288;289;290 192;193;194;195;196;197;198;199 197 7 AAGPASPPEEDPERTK Unmodified 1650.7849 0.78492843 1402 Q96KM6 ZNF512B Zinc finger protein 512B yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 64.383 54.357 3 0.0051539 2 38649 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.988 41.944 4840400 0 0 413060 0 1634400 2792900 64 1402 63 291;292;293 200;201 201 2 AAGPLLTDECR Unmodified 1201.5761 0.57612163 1439 Q9BQ69 MACROD1 O-acetyl-ADP-ribose deacetylase MACROD1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 95.875 86.44 2 0.0093835 1 63850 20150910_Q1_SA_NiHu_Masterprac_group15_C 65.695 51.451 5310200 431320 1330200 566990 0 897570 2084100 65 1439 64 294;295;296;297;298 202 202 1 AAIVARHTYLANGQTK Unmodified 1712.9322 0.93220179 532 F6RIS4;Q9H3M7 TXNIP Thioredoxin-interacting protein yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 71.421 64.242 3 6.1405E-05 2 50343 20150910_Q1_SA_NiHu_Masterprac_group15_C 88.108 81.487 5901300 0 493570 950650 1479600 2152000 825500 66 532 65 299;300;301;302;303 203;204 203 2 AALAHPFFQDVTKPVPHLRL Unmodified 2256.2531 0.253142 589 P24941-2;P24941;G3V5T9;E7ESI2 CDK2 Cyclin-dependent kinase 2 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 133.58 133.58 5 0.0011387 1 86688 20150910_Q1_SA_NiHu_Masterprac_group13_B 70.802 57.367 52861000 0 0 0 52861000 0 0 67 589 66 304 205 205 1 AALEAQNALHNMK Unmodified 1409.7085 0.70853279 560 Q92879-2;Q92879-3;F8W940;Q92879;Q92879-4;G5EA30;E9PQK4;E9PSH0;E9PKU1 CELF1 CUGBP Elav-like family member 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 2 1 1 1 96.355 90.098 2;3 7.6162E-15 3 61893 20150910_Q1_SA_NiHu_Masterprac_group15_B 104.17 75.466 7906600 2433700 3230300 583920 1658700 0 0 68 560 67 305;306;307;308;309;310 206;207;208 206 3 AALEEANGEIEK Unmodified 1272.6198 0.61976058 1314 Q8NB16;Q8NB16-2;I3L4Z5;I3L2T9 MLKL Mixed lineage kinase domain-like protein yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 81.878 74.35 2 4.3881E-64 3 51433 20150910_Q1_SA_NiHu_Masterprac_group15_B 140.91 110.77 16262000 243740 4381500 1154600 387310 1506100 8588200 69 1314 68 311;312;313;314;315;316 209;210;211 209 3 AALEEFSR Unmodified 921.4556 0.45559579 1365 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 92.839 85.01 2 0.040645 1 58235 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.016 24.574 15781000 1419200 2543300 1558300 1040900 3123300 6096000 70 1365 69 317;318;319;320;321;322 212 212 1 AALEEVYPDLTPEETRR Unmodified 1987.9851 0.9850848 146 Q9H0D6-2;B4DZC3;Q9H0D6 XRN2 5'-3' exoribonuclease 2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.1 131.49 3 0.0022598 1 85017 20150910_Q1_SA_NiHu_Masterprac_group10_B 48.214 28.952 9279800 0 9279800 0 0 0 0 71 146 70 323 213 213 1 AALGEPVRLER Acetyl (Protein N-term) 1251.6935 0.69353465 575 G3V1D4;Q9NUP9 LIN7C Protein lin-7 homolog C yes no 1 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.03 130.42 2 0.0033269 1 83821 20150910_Q1_SA_NiHu_Masterprac_group10_B 72.2 27.883 0 0 0 0 0 0 0 72 575 71 324 214 214 1 AALGHLAGEAAAAPGPGTPCASR Acetyl (Protein N-term) 2144.0433 0.043285158 1499 Q9H7E9;Q9H7E9-2 C8orf33 UPF0488 protein C8orf33 yes no 1 0 0 By matching By matching By matching By MS/MS By matching By matching 1 133.34 133.34 3 0.0011971 1 86414 20150910_Q1_SA_NiHu_Masterprac_group13_B 63.706 41.341 36881000 0 0 0 36881000 0 0 73 1499 72 325 215 215 0 AALGHLAGEAAAAPGPGTPCASRGAR Acetyl (Protein N-term) 2428.203 0.2029737 1499 Q9H7E9;Q9H7E9-2 C8orf33 UPF0488 protein C8orf33 yes no 1 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 132.65 115.8 3 1.1445E-11 2 83298 20150910_Q1_SA_NiHu_Masterprac_group13_C 72.568 57.945 54876000 32614000 0 22262000 0 0 0 74 1499 73 326;327 216;217 216 2 AALLSGPPGVGK Unmodified 1065.6182 0.61824444 896 P35251-2;P35251 RFC1 Replication factor C subunit 1 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 118.66 109.87 2 0.03954 1 71858 20150910_Q1_SA_NiHu_Masterprac_group13_B 44.614 19.738 7017700 411150 2321300 2483600 1801700 0 0 75 896 74 328;329;330;331 218 218 1 AALMESQGQQQEER Unmodified 1603.726 0.72603334 1121 Q14980-2;Q14980 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 65.828 57.731 2 0.010211 1 40870 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.874 31.347 728830 0 0 0 0 260520 468310 76 1121 75 332;333 219 219 1 AALMESQGQQQEERGQQER Unmodified 2202.0084 0.008356215 1121 Q14980-2;Q14980 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 65.805 57.333 3 0.024063 2 40387 20150910_Q1_SA_NiHu_Masterprac_group15_B 36.029 29.428 2571400 0 746310 203640 0 830380 791090 77 1121 76 334;335;336;337 220;221 220 2 AALNGADIYAGCCTLK Unmodified 1696.7913 0.79127614 236 Q8WVV9-4;C9J9G0;Q8WVV9;Q8WVV9-3;Q8WVV9-2;C9IYN3;H7BXH8 HNRNPLL;HNRPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 131.66 123.4 2 5.2222E-164 4 86707 20150910_Q1_SA_NiHu_Masterprac_group15_B 158.91 135.57 114990000 0 48412000 35032000 10317000 1907900 19325000 78 236 77 338;339;340;341;342 222;223;224;225 223 4 AALQMQFNAAER Unmodified 1348.6558 0.65576893 1343 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-5;Q8WX93-2;Q8WX93-9 PALLD Palladin yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 122.23 121.62 2 0.0037769 1 78092 20150910_Q1_SA_NiHu_Masterprac_group10_B 67.879 46.847 726230 0 726230 0 0 0 0 79 1343 78 343 226 226 1 AAMYDIISSPSKDSTK Unmodified 1712.8291 0.82910143 1222 Q6KC79-2;Q6KC79;Q6KC79-3 NIPBL Nipped-B-like protein yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 122.15 114.3 3 0.0039447 1 75539 20150910_Q1_SA_NiHu_Masterprac_group10_C 52.372 38.626 4132400 3262800 0 0 869620 0 0 80 1222 79 344;345 227 227 1 AANAAENDFSVSQAEMSSR Unmodified 1983.8592 0.85923236 1321;411 E9PC67;F8VQZ0;Q5STZ8;Q8NE71;Q8NE71-2;H0YGW7 ABCF1 ATP-binding cassette sub-family F member 1 no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 2 123.82 113.9 2;3 1.7478E-145 6 80820 20150910_Q1_SA_NiHu_Masterprac_group13_C 147.64 128.48 38125000 11127000 3151100 7799500 2114900 5587200 8345500 81 411;1321 80 346;347;348;349;350;351;352;353 228;229;230;231;232;233 228 6 AANENEPEGKVPSK Unmodified 1468.7158 0.71578623 42 A8MTM6;Q15398;Q15398-1 DLGAP5 Disks large-associated protein 5 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 45.64 37.953 3 0.0065572 1 26785 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.276 44.087 1896900 0 0 453040 0 106380 1337400 82 42 81 354;355;356 234 234 1 AANLEMFKGK Unmodified 1107.5747 0.57466507 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 91.537 89.48 2 0.016738 1 61233 20150910_Q1_SA_NiHu_Masterprac_group15_B 85.533 68.862 22783000 0 0 0 0 0 22783000 83 1344 82 357 235 235 1 AANLEMFKGKGIEER Unmodified 1691.8665 0.86648999 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 2 2 2 113.39 105.7 3;4 0.0070413 3 69516 20150910_Q1_SA_NiHu_Masterprac_group10_B 49.216 30.803 16148000 0 2062800 2665400 0 0 11420000 84 1344 83 358;359;360;361;362;363 236;237;238 238 3 AANSSGQGFQNKNR Acetyl (Protein N-term) 1519.7128 0.71276654 1539 Q9NRY2;Q9NRY2-2 INIP SOSS complex subunit C yes no 1 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 48.744 42.26 2 0.038311 1 30243 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.227 30.128 773460 181780 0 0 0 178730 412950 85 1539 84 364;365;366 239 239 1 AAPAERQIDLQR Unmodified 1366.7317 0.73171107 1159 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 79.937 70.136 3 0.039529 1 48836 20150910_Q1_SA_NiHu_Masterprac_group10_B 44.847 25.941 6798900 0 2879400 3919400 0 0 0 86 1159 85 367;368 240 240 1 AAPAPATAASTTSSSSTSLSSSSK Unmodified 2154.0288 0.028800111 884 P28356 HOXD9 Homeobox protein Hox-D9 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 82.416 75.037 2 0.0040675 1 51820 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.384 38.263 6294400 0 1075800 1531100 759020 643610 2285000 87 884 86 369;370;371;372;373 241 241 1 AAPAPGKVGDVTPQVK Unmodified 1533.8515 0.85149185 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;Q13428-3;Q13428;Q13428-4;E9PHK9 TCOF1 Treacle protein no no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 91.071 83.293 3 0.0019745 3 57382 20150910_Q1_SA_NiHu_Masterprac_group10_C 59.68 39.444 12103000 3423000 1120600 1121500 1800600 3337400 1300200 88 383;1082 87 374;375;376;377;378;379 242;243;244 244 3 AAPAPGKVGDVTPQVKGGALPPAK Unmodified 2225.2532 0.25320158 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;Q13428-3;Q13428;Q13428-4;E9PHK9 TCOF1 Treacle protein no no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 111.72 103.35 4 0.003432 1 69462 20150910_Q1_SA_NiHu_Masterprac_group10_C 46.35 39.024 7135400 3831800 483120 1584000 1236400 0 0 89 383;1082 88 380;381;382;383 245 245 1 AAPAPTASSTININTSTSK Unmodified 1830.9323 0.93232095 1272 Q86Y37-2;Q86Y37 CACUL1 CDK2-associated and cullin domain-containing protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 106.27 98.814 2 0.0017181 2 67318 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.866 44.027 2555800 0 723810 700460 0 0 1131500 90 1272 89 384;385;386 246;247 246 2 AAPEEHDSPTEASQPIVEEEETK Acetyl (Protein N-term) 2564.1402 0.14020105 1481 Q9H0S4;G5E955;F5H1N9 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 1 2 2 2 126.02 113.45 2;3 9.3306E-22 6 80519 20150910_Q1_SA_NiHu_Masterprac_group13_C 93.196 88.556 141800000 42608000 12979000 53319000 0 19451000 13447000 91 1481 90 387;388;389;390;391;392;393;394;395 248;249;250;251;252;253 249 6 AAPEEHDSPTEASQPIVEEEETKTFK Acetyl (Protein N-term) 2940.3513 0.35125646 1481 Q9H0S4;G5E955;F5H1N9 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 131.57 121.16 3 0 5 82516 20150910_Q1_SA_NiHu_Masterprac_group13_C 170.92 156.44 141170000 23237000 60043000 38599000 15415000 3876800 0 92 1481 91 396;397;398;399;400 254;255;256;257;258 255 5 AAPEEPQQRPPEAVAAAPAGTTSSR Unmodified 2488.2306 0.23062824 677 Q96JP5-2;H9KV86;Q96JP5 ZFP91 E3 ubiquitin-protein ligase ZFP91 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 1 1 1 1 1 95.75 87.528 3 0.0097527 3 59631 20150910_Q1_SA_NiHu_Masterprac_group15_B 35.812 25.863 38420000 8499300 529960 6641200 3562800 6456000 12731000 93 677 92 401;402;403;404;405;406;407 259;260;261 259 3 AAPGAEFAPNK Unmodified 1071.5349 0.53490874 1133 Q15233;F5GYZ3 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 78.187 70.827 2 0.0093835 2 54455 20150910_Q1_SA_NiHu_Masterprac_group15_C 65.695 50.757 16478000 0 2918500 1951000 1852300 3994200 5762200 94 1133 93 408;409;410;411;412 262;263 262 2 AAPGAEFAPNKR Unmodified 1227.636 0.63601977 1133 Q15233;F5GYZ3 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 2 68.023 59.896 2;3 0.00094017 7 42289 20150910_Q1_SA_NiHu_Masterprac_group10_B 81.625 66.253 23185000 7624800 3053100 2718100 5464200 4324600 0 95 1133 94 413;414;415;416;417;418;419;420 264;265;266;267;268;269;270 268 7 AAPQSPSVPKKPGPPVLSSDPNMLSNEEAGHHFEQMLK Unmodified 4050.9932 0.99317043 100 E9PF10;O75694-2;B4DLT2;O75694 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 2 1 132.57 130.91 5;6 2.9248E-07 3 85488 20150910_Q1_SA_NiHu_Masterprac_group13_B 35.368 28.989 126930000 0 0 0 18996000 0 107930000 96 100 95 421;422;423 271;272;273 271 3 AAPSAGSWSTFQHK Acetyl (Protein N-term) 1515.7106 0.71064128 267 E9PDN0;C9JRR9;P42575 CASP2 Caspase-2;Caspase-2 subunit p18;Caspase-2 subunit p13;Caspase-2 subunit p12 yes no 1 0 0 By matching By matching By matching By matching By matching By MS/MS 1 130.42 125.45 2 0.00057747 1 85198 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.879 52.185 1851900 0 0 0 0 0 1851900 97 267 96 424 274 274 1 AAQCGHPVLCVQPHHIGVAVK Unmodified 2277.1623 0.16229486 563 P08651-4;P08651-5;P08651-3;P08651-2;P08651;F8W9H9 NFIC Nuclear factor 1 C-type yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 3 111.65 104.91 3;4;5 9.5917E-06 4 71802 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.289 53.768 18031000 0 839810 909480 1268200 842860 14171000 98 563 97 425;426;427;428;429;430;431 275;276;277;278 277 3 AAQGEPQVQFK Acetyl (Protein N-term) 1243.6197 0.619701 173 P62826;B5MDF5 RAN GTP-binding nuclear protein Ran yes no 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 1 112.92 108.26 2 9.1825E-06 5 72777 20150910_Q1_SA_NiHu_Masterprac_group10_C 105.2 62.961 26720000 0 4461200 3903000 5037500 0 13319000 99 173 98 432;433;434;435;436;437 279;280;281;282;283 283 4 AAQHGVCSVLK Unmodified 1168.6023 0.6022768 414 Q5JTH9-2;E9PCK7;Q5JTH9 RRP12 RRP12-like protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 58.936 57.581 2 1.2937E-41 1 40770 20150910_Q1_SA_NiHu_Masterprac_group15_B 131.42 98.04 2534900 0 549150 0 317260 0 1668500 100 414 99 438;439;440 284 284 1 AAQLAIRVTNPNAR Unmodified 1493.8427 0.8426585 312 D3YTB1;P62910;F8W727 RPL32 60S ribosomal protein L32 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 103.64 95.796 3 0.0059448 2 65477 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.291 25.152 8370900 1348500 0 0 1009700 1690400 4322300 101 312 100 441;442;443;444 285;286 285 2 AAQRLQDTSSYAK Unmodified 1437.7212 0.72120596 840 P15924;P15924-2 DSP Desmoplakin yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 55.396 49.339 3 0.0010613 1 35218 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.861 68.532 4892100 0 828140 983140 328660 760100 1992000 102 840 101 445;446;447;448;449 287 287 1 AAQSAPKVVLK Acetyl (Protein N-term) 1152.6867 0.68665836 1649 Q9Y3Y2-4;Q9Y3Y2;Q9Y3Y2-3 CHTOP Chromatin target of PRMT1 protein yes no 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 103.54 95.197 2 4.3866E-20 6 63584 20150910_Q1_SA_NiHu_Masterprac_group13_B 122.18 62.913 58553000 12881000 4907500 12543000 10845000 10413000 6964300 103 1649 102 450;451;452;453;454;455 288;289;290;291;292;293 288 6 AAQSAPKVVLKSTTK Acetyl (Protein N-term) 1569.909 0.90900673 1649 Q9Y3Y2-4;Q9Y3Y2;Q9Y3Y2-3 CHTOP Chromatin target of PRMT1 protein yes no 1 0 2 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 96.388 87.433 3 0.0041287 2 59413 20150910_Q1_SA_NiHu_Masterprac_group13_B 55.415 33.318 8666400 5163000 0 2102900 1400600 0 0 104 1649 103 456;457;458 294;295 294 2 AAQVAQDEEIAR Unmodified 1299.6419 0.64189301 1277 Q8IVM0;Q8IVM0-2 CCDC50 Coiled-coil domain-containing protein 50 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 70.267 63.665 2 0.0040099 2 44470 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.393 48.727 2979300 0 486920 0 0 792670 1699700 105 1277 104 459;460;461 296;297 296 2 AAQVERYVPEHER Unmodified 1582.7852 0.7852032 1263 Q86UT8;E9PJ16;E9PPT8 CCDC84 Coiled-coil domain-containing protein 84 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 75.106 66.056 3 0.0082324 1 46014 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.567 37.96 5732500 0 1348500 1111000 0 1501500 1771600 106 1263 105 462;463;464;465 298 298 1 AARPEIADRATSEVPGSQASPNPVPGDGLHR Unmodified 3151.5759 0.57588571 1389 Q96GM8;B4DEM6 TOE1 Target of EGR1 protein 1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 128.89 110.89 5 0.026994 1 79709 20150910_Q1_SA_NiHu_Masterprac_group13_C 33.451 24.955 2484900 0 0 2484900 0 0 0 107 1389 106 466 299 299 1 AARRPYAPINANAIK Unmodified 1624.9162 0.9161578 754 O94776;Q68DB1 MTA2;DKFZp686F2281 Metastasis-associated protein MTA2 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 2 2 2 89.401 82.449 3;4 0.0062139 2 56428 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.467 50.467 27768000 0 3832600 4284600 0 0 19651000 108 754 107 467;468;469;470;471;472 300;301 300 2 AASAAAASAAAASAASGSPGPGEGSAGGEK Acetyl (Protein N-term) 2428.1102 0.11023833 1076 Q13263-2;Q13263 TRIM28 Transcription intermediary factor 1-beta yes no 1 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 132.19 126.76 3 3.9061E-157 2 78670 20150910_Q1_SA_NiHu_Masterprac_group10_C 136.74 119.38 36139000 14102000 13703000 0 8333500 0 0 109 1076 108 473;474;475 302;303 303 2 AASAPAKGTPGKGATPAPPGK Unmodified 1830.9952 0.99519598 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 3 2 50.733 44.303 3;4 3.1837E-45 10 37555 20150910_Q1_SA_NiHu_Masterprac_group15_C 110.64 73.163 109230000 24399000 13937000 12326000 13168000 33626000 11774000 110 383;1082 109 476;477;478;479;480;481;482;483;484;485;486;487;488;489;490 304;305;306;307;308;309;310;311;312;313 308 10 AASITSEVFNK Unmodified 1165.5979 0.59790293 1653 Q9Y5B9;F5H063 SUPT16H FACT complex subunit SPT16 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 125.44 112.08 2 0.0051197 1 76773 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.632 46.882 5352400 0 0 1737800 0 1877200 1737300 111 1653 110 491;492;493 314 314 1 AASLGSSQSSRTYAGGTASATK Unmodified 2057.9978 0.99777475 375 G5E9D3;P20810-5;E7ESM9;P20810-7;P20810-6;B7Z468;F8W7E0;H0YA91;E9PSG1;D6RGF7;D6RBR1;E7EN75;H0Y944 CAST Calpastatin yes no 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 65.897 58.82 3 0.025198 2 41097 20150910_Q1_SA_NiHu_Masterprac_group13_B 34.148 24.885 3850000 571940 475920 618840 764660 610820 807780 112 375 111 494;495;496;497;498;499 315;316 315 2 AASQAVEEMR Acetyl (Protein N-term) 1132.5183 0.5182724 704 O15160-2;O15160;E7EQB9 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 1 116.28 107.06 2 0.0032423 5 72981 20150910_Q1_SA_NiHu_Masterprac_group15_B 85.813 56.045 14767000 1780200 1282200 1941400 835880 3492000 5434900 113 704 112 500;501;502;503;504;505;506 317;318;319;320;321 318 5 AASQDHVRGFLEK Unmodified 1456.7423 0.74227576 1642 Q9Y314 NOSIP Nitric oxide synthase-interacting protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 2 79.334 72.497 3 0.0022759 6 50513 20150910_Q1_SA_NiHu_Masterprac_group13_B 67.749 48.253 29305000 4335100 4532100 5040500 1516700 3292400 10588000 114 1642 113 507;508;509;510;511;512;513;514 322;323;324;325;326;327 322 6 AASTAAGKQRIPK Acetyl (Protein N-term) 1339.7572 0.75719754 1472 Q9BZJ0-2 yes yes 1 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 63.784 55.552 3 0.0017483 2 39242 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.237 43.088 11100000 1160600 3001300 1922000 0 1407800 3607900 115 1472 114 515;516;517;518;519 328;329 328 2 AASVPVKGSLGQGTAPVLPGK Unmodified 1933.0997 0.09966105 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 2 1 2 2 127.8 118.99 3 2.0698E-45 7 76678 20150910_Q1_SA_NiHu_Masterprac_group10_C 108.25 94.997 236460000 136380000 25800000 31314000 20981000 21992000 0 116 383;1082 115 520;521;522;523;524;525;526;527 330;331;332;333;334;335;336 336 7 AATAATQGPKAQDKPYICTDCGK Unmodified 2451.1522 0.15224326 1408 Q96MX3 ZNF48 Zinc finger protein 48 yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 79.125 70.018 4 0.037182 1 54105 20150910_Q1_SA_NiHu_Masterprac_group15_C 30.311 19.963 3202900 809920 493580 0 0 1899400 0 117 1408 116 528;529;530 337 337 1 AATNHVTPEEKEQVYRER Unmodified 2156.061 0.061043712 1580 Q9P2W1;Q9P2W1-2 PSMC3IP Homologous-pairing protein 2 homolog yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 60.864 53.47 4 0.024171 1 43854 20150910_Q1_SA_NiHu_Masterprac_group15_C 36.597 19.526 2773400 0 0 792680 578160 1155700 246860 118 1580 117 531;532;533;534 338 338 1 AATQGVVENQCQHIK Unmodified 1681.8206 0.82060243 1557 Q9NWW7;C9JZF3;C9JJF4 C2orf42 Uncharacterized protein C2orf42 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 63.775 56.815 3 2.0517E-13 4 42096 20150910_Q1_SA_NiHu_Masterprac_group10_C 102.33 80.419 6605700 970990 949450 960110 676150 1613900 1435000 119 1557 118 535;536;537;538;539;540 339;340;341;342 342 4 AAVAASVGLSEGPAGSR Unmodified 1498.774 0.77396981 1261 Q86U90 YRDC YrdC domain-containing protein, mitochondrial yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 109.21 100.42 2 0.0030265 1 67531 20150910_Q1_SA_NiHu_Masterprac_group10_C 62.813 46.04 4286100 725310 618640 0 0 1187200 1755000 120 1261 119 541;542;543;544 343 343 1 AAVAVVPLVSEDK Unmodified 1296.7289 0.7289171 97 B4DLG2;O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 133.14 115.29 2 0.030658 1 82202 20150910_Q1_SA_NiHu_Masterprac_group15_C 44.426 22.876 5267800 0 0 0 0 5267800 0 121 97 120 545 344 344 1 AAVELEEPEDAR Unmodified 1327.6256 0.62557424 757 O94906-2;O94906 PRPF6 Pre-mRNA-processing factor 6 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 98.057 91.087 2 0.028955 1 66671 20150910_Q1_SA_NiHu_Masterprac_group15_C 47.991 22.291 3038300 0 724630 0 0 990380 1323300 122 757 121 546;547;548 345 345 1 AAVGEEKDINTFVGTPVEK Unmodified 2003.0211 0.021135958 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 131.66 114.82 3 0.00048413 2 82193 20150910_Q1_SA_NiHu_Masterprac_group13_C 65.374 38.963 23096000 16265000 0 6830400 0 0 0 123 919;920 122 549;550 346;347 346 2 AAVKEPLEFHAK Acetyl (Protein N-term) 1380.7402 0.74015049 1037 Q03701;F5H3Y6 CEBPZ CCAAT/enhancer-binding protein zeta yes no 1 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 2 1 1 1 118.02 110.15 2;3 8.6706E-18 4 72000 20150910_Q1_SA_NiHu_Masterprac_group10_B 118.61 94.535 46090000 8119400 12333000 5615700 2719400 0 17302000 124 1037 123 551;552;553;554;555;556 348;349;350;351 349 4 AAVKGSDGFWVGK Unmodified 1320.6826 0.68263561 1264 Q86UV5;Q86UV5-2;B7ZKS7;Q86UV5-3 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 107.12 99.787 3 0.0059096 1 71792 20150910_Q1_SA_NiHu_Masterprac_group15_C 60.161 35.696 4879900 0 521720 0 0 1680000 2678200 125 1264 124 557;558;559 352 352 1 AAWGALEK Unmodified 844.4443 0.44430282 357 G3V2F4;E7EPD8;Q9NUW8;H0YJ44;Q86TV8 TDP1 Tyrosyl-DNA phosphodiesterase 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 100.54 92.465 2 0.0063921 1 67481 20150910_Q1_SA_NiHu_Masterprac_group15_C 95.815 53.419 8659300 631440 499950 1201200 543910 1613600 4169100 126 357 125 560;561;562;563;564;565 353 353 1 AAYEAELGDARK Unmodified 1292.6361 0.63607935 783 P02545;P02545-3;Q6UYC3;P02545-2;Q3BDU5;Q5TCJ4 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 74.42 68.634 3 0.00071527 5 47880 20150910_Q1_SA_NiHu_Masterprac_group10_B 91.313 68.301 11859000 1042900 2846900 1413300 926650 0 5629200 127 783 126 566;567;568;569;570 354;355;356;357;358 357 5 AAYLSDPRAPPCEYK Unmodified 1736.8192 0.81920545 1012 P78527 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 2 3 105.29 97.583 2;3 5.6788E-05 11 66395 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.26 66.931 189000000 4269200 41047000 24743000 25183000 42181000 51580000 128 1012 127 571;572;573;574;575;576;577;578;579;580;581;582;583;584 359;360;361;362;363;364;365;366;367;368;369 363 11 ACARPLISVYSEK Acetyl (Protein N-term) 1534.7814 0.78136338 392 E7EWF1;P36578;H3BU31;B4DP82;H3BTP7 RPL4 60S ribosomal protein L4 yes no 1 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.62 132.02 2 2.2749E-09 2 85542 20150910_Q1_SA_NiHu_Masterprac_group10_B 105.19 66.891 12039000 0 12039000 0 0 0 0 129 392 128 585 370;371 370 2 ACARPLISVYSEKGESSGK Acetyl (Protein N-term) 2080.0259 0.02590376 392 E7EWF1;P36578;H3BU31;B4DP82;H3BTP7 RPL4 60S ribosomal protein L4 yes no 1 0 2 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 2 1 1 127.61 122.3 3 6.4164E-172 4 84431 20150910_Q1_SA_NiHu_Masterprac_group15_B 154.39 137.41 16344000 6395800 1241300 0 658540 0 8048400 130 392 129 586;587;588;589;590 372;373;374;375 373 3 ACCPLEGVRPSPQQTEYRNK Unmodified 2389.1267 0.12669721 478 Q8IZ69-2;Q8IZ69;F2Z2W7 TRMT2A tRNA (uracil-5-)-methyltransferase homolog A yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 100.46 90.766 4 0.031595 1 61075 20150910_Q1_SA_NiHu_Masterprac_group10_B 33.666 27.04 15694000 1424200 3990100 3932500 0 2623100 3723600 131 478 130 591;592;593;594;595 376 376 1 ACEIRDQITSK Unmodified 1319.6503 0.65034921 1362 Q92878-2;Q92878;Q92878-3;E7EN38;E7ESD9 RAD50 DNA repair protein RAD50 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 2 2 67.349 59.868 2;3 2.9051E-07 7 41992 20150910_Q1_SA_NiHu_Masterprac_group13_B 107.34 63.925 36523000 4023200 3121200 2735900 1694600 8278100 16670000 132 1362 131 596;597;598;599;600;601;602;603;604 377;378;379;380;381;382;383 377 7 ACGPKLTNSPTVIVMVGLPARGK Unmodified 2365.2974 0.29739135 519 F5H5L1;Q5VX15 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 132.98 114.98 4 0.0016467 1 83915 20150910_Q1_SA_NiHu_Masterprac_group13_C 50.916 22.591 17938000 0 0 17938000 0 0 0 133 519 132 605 384 384 1 ACGVSRPVIACSVTIK Unmodified 1716.9015 0.90149529 969 P55769;B1AHD1 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 122.27 112.8 3 0.00024781 5 75031 20150910_Q1_SA_NiHu_Masterprac_group10_C 71.316 27.455 28971000 8512800 4348700 4898100 2553700 1749500 6908600 134 969 133 606;607;608;609;610;611 385;386;387;388;389 389 5 ACGVSRPVIACSVTIKEGSQLK Unmodified 2359.2352 0.23518503 969 P55769;B1AHD1 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 2 130.41 114.72 3;4 3.9053E-06 2 76003 20150910_Q1_SA_NiHu_Masterprac_group10_C 78.057 56.575 11266000 11266000 0 0 0 0 0 135 969 134 612;613 390;391 390 1 ACLDRNPEAFKPK Unmodified 1544.7769 0.7769467 1223 Q6MZP7-3;Q6MZP7;Q6MZP7-4;Q6MZP7-2 LIN54 Protein lin-54 homolog yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 81.152 73.772 3 9.4646E-09 2 51146 20150910_Q1_SA_NiHu_Masterprac_group15_B 103.91 79.485 11467000 0 1343500 1432500 2120100 3376000 3194800 136 1223 135 614;615;616;617;618 392;393 393 2 ACLNFLK Unmodified 864.45276 0.45275902 1339 Q8WUA2 PPIL4 Peptidyl-prolyl cis-trans isomerase-like 4 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 126.93 124.15 2 0.0013153 1 84055 20150910_Q1_SA_NiHu_Masterprac_group15_B 113.08 72.511 1799900 0 386590 0 0 0 1413300 137 1339 136 619;620 394 394 1 ACPLQPDHTNDEKE Unmodified 1652.71 0.71004893 1124 Q15004;H0YKX3 KIAA0101 PCNA-associated factor yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 2 2 2 1 2 52.905 47.746 2;3 0.016684 3 33971 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.88 35.165 25059000 0 4880500 6310700 1481700 1944300 10442000 138 1124 137 621;622;623;624;625;626;627;628;629 395;396;397 396 2 ACQLSVVVDDK Unmodified 1232.6071 0.60708741 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 110.27 100.8 2 0.0081578 1 66855 20150910_Q1_SA_NiHu_Masterprac_group10_B 67.519 49.446 3024400 0 2029300 0 0 995160 0 139 487 138 630;631 398 398 1 ACQSIYPLHDVFVRK Unmodified 1831.9403 0.94032364 321 D6RAT0;P61247;D6RG13;D6R9B6;D6RB09;H0Y9Y4 RPS3A 40S ribosomal protein S3a yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching 2 1 132.04 126.12 3;4 0.0004366 3 84950 20150910_Q1_SA_NiHu_Masterprac_group13_B 77.204 65.286 26184000 0 0 0 22764000 3420500 0 140 321 139 632;633;634 399;400;401 399 2 ACQSIYPLHDVFVRKVK Unmodified 2059.1037 0.10370057 321 D6RAT0;P61247;D6RG13;D6R9B6;D6RB09;H0Y9Y4 RPS3A 40S ribosomal protein S3a yes no 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 2 1 131.22 122.86 4;5 0.00069403 4 83782 20150910_Q1_SA_NiHu_Masterprac_group13_B 70.47 43.04 53592000 16993000 0 0 32160000 4438200 0 141 321 140 635;636;637;638 402;403;404;405 402 4 ACSVGAVPGITK Unmodified 1158.6067 0.60669348 1549 Q9NVN8 GNL3L Guanine nucleotide-binding protein-like 3-like protein yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 102.76 95.442 2 0.0033562 2 65062 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.563 45.71 6260800 0 1331600 1098500 0 0 3830700 142 1549 141 639;640;641 406;407 406 2 ACVQGECGVCHYCR Unmodified 1754.6745 0.6745486 314 E7EMR1;D4QA03;E9PIL6;Q9Y2K7-3;Q9Y2K7-2;Q9Y2K7 KDM2A Lysine-specific demethylase 2A yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 67.591 60.38 3 0.00092181 4 47944 20150910_Q1_SA_NiHu_Masterprac_group15_C 74.987 74.987 10158000 1359000 1085600 827510 1353200 1842200 3690600 143 314 142 642;643;644;645;646;647 408;409;410;411 411 4 ADAAATAGAGGSGTR Acetyl (Protein N-term) 1274.5851 0.58510641 233 C9J7M8;Q7Z7C8;Q7Z7C8-2;Q7Z7C8-4 TAF8 Transcription initiation factor TFIID subunit 8 yes no 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 64.952 56.891 2 9.5122E-05 5 40714 20150910_Q1_SA_NiHu_Masterprac_group10_B 87.363 77.618 3787600 861220 887020 516040 632810 890530 0 144 233 143 648;649;650;651;652 412;413;414;415;416 415 5 ADAAATAGAGGSGTRSGSK Acetyl (Protein N-term) 1633.7656 0.76558997 233 C9J7M8;Q7Z7C8;Q7Z7C8-2;Q7Z7C8-4 TAF8 Transcription initiation factor TFIID subunit 8 yes no 1 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 51.724 45.868 2 4.5691E-65 5 32979 20150910_Q1_SA_NiHu_Masterprac_group15_B 121.01 107.46 13606000 0 2591000 2535700 1816600 3510800 3152300 145 233 144 653;654;655;656;657 417;418;419;420;421 419 5 ADAEAECNILRK Unmodified 1388.6718 0.67181293 1383 Q96ES7 CCDC101 SAGA-associated factor 29 homolog yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 77.985 72.933 3 0.022183 1 55872 20150910_Q1_SA_NiHu_Masterprac_group15_C 43.604 29.875 2744800 0 399490 0 287220 927550 1130600 146 1383 145 658;659;660;661 422 422 1 ADCPENATMSLKHLTK Unmodified 1814.8655 0.86550371 1509 Q9H9L3 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 104.43 94.889 3 0.014796 1 70568 20150910_Q1_SA_NiHu_Masterprac_group13_C 42.818 30.326 7365500 1876200 1157200 1955600 507760 1868800 0 147 1509 146 662;663;664;665;666 423 423 1 ADDPYAHLSK Unmodified 1115.5247 0.52473799 1321;411 E9PC67;F8VQZ0;Q5STZ8;Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 no no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 74.824 59.436 2 0.0030558 1 48393 20150910_Q1_SA_NiHu_Masterprac_group13_C 92.611 43.613 1268200 0 0 1268200 0 0 0 148 411;1321 147 667 424 424 1 ADEGISFR Unmodified 893.4243 0.42429566 1044 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 90.816 82.094 2 0.013633 1 56324 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.698 30.781 30425000 0 0 3534400 1457600 5969300 19463000 149 1044 148 668;669;670;671 425 425 1 ADEVVAPGQEK Unmodified 1141.5615 0.56151742 1288 Q8IY37 DHX37 Probable ATP-dependent RNA helicase DHX37 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 56.421 49.763 2 0.0060017 2 40587 20150910_Q1_SA_NiHu_Masterprac_group13_C 70.728 44.022 4993000 0 2041500 1635200 0 383700 932510 150 1288 149 672;673;674;675;676 426;427 426 2 ADFDDRVSDEEK Acetyl (Protein N-term) 1466.6161 0.61613177 961 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 1 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 100.45 94.06 2 0.00053199 3 62798 20150910_Q1_SA_NiHu_Masterprac_group10_B 94.547 64.997 3624600 1461500 2163200 0 0 0 0 151 961 150 677;678;679 428;429;430 429 3 ADFDDRVSDEEKVR Acetyl (Protein N-term) 1721.7857 0.78565671 961 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 1 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 102.3 100.74 3 0.0020634 2 68733 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.023 51.459 2988100 0 1382800 0 685900 0 919380 152 961 151 680;681;682 431;432 431 2 ADFSGMSQTDLSLSK Unmodified 1585.7294 0.72938739 418 H0Y3G3;E9PD07;P35237 SERPINB6 Serpin B6 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.1 131.49 2 4.4413E-05 1 85016 20150910_Q1_SA_NiHu_Masterprac_group10_B 88.951 73.963 10063000 0 10063000 0 0 0 0 153 418 152 683 433 433 1 ADIQTER Acetyl (Protein N-term) 873.41921 0.41921028 989 P62280 RPS11 40S ribosomal protein S11 yes yes 1 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 65.538 58.733 2 0.021192 2 41918 20150910_Q1_SA_NiHu_Masterprac_group10_B 79.116 8.2035 2253600 595310 509670 729440 0 0 419200 154 989 153 684;685;686;687 434;435 435 2 ADIQTERAYQKQPTIFQNK Acetyl (Protein N-term) 2320.1812 0.18115885 989 P62280 RPS11 40S ribosomal protein S11 yes yes 1 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 129.78 129.48 3 1.1537E-100 2 82784 20150910_Q1_SA_NiHu_Masterprac_group13_B 135.69 118.1 7456300 0 3315000 0 4141200 0 0 155 989 154 688;689 436;437 437 2 ADKEAAFDDAVEER Acetyl (Protein N-term) 1606.7111 0.71109479 1051 Q09028-3;Q09028;E9PNS2;E9PIC4;E9PNS6 RBBP4 Histone-binding protein RBBP4 yes no 1 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 129.86 113.02 2 9.3292E-124 2 80391 20150910_Q1_SA_NiHu_Masterprac_group13_C 149.6 136.46 37075000 4118800 0 32956000 0 0 0 156 1051 155 690;691 438;439 438 2 ADLDVSGPK Unmodified 900.45526 0.45526144 1054 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 68.858 62.207 2 0.00050793 4 43684 20150910_Q1_SA_NiHu_Masterprac_group15_B 110.76 42.74 7981600 0 2608500 1737500 0 0 3635600 157 1054 156 692;693;694 440;441;442;443 442 4 ADLHGAIISVTK Unmodified 1223.6874 0.68738664 773 O95707;A8MYC1 POP4 Ribonuclease P protein subunit p29 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 112.6 108.74 3 0.0089914 1 74476 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.32 36.265 1217300 0 0 0 0 0 1217300 158 773 157 695 444 444 1 ADLIPYQDSPEGPDHSSASSGVPNPPKAR Unmodified 2988.4213 0.42134213 1340 Q8WUA4;H7C318;H7C3X9;H0Y4Q6 GTF3C2 General transcription factor 3C polypeptide 2 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 129.26 118.93 4 0.00012162 4 81231 20150910_Q1_SA_NiHu_Masterprac_group13_C 45.042 36.694 47734000 0 3193200 13518000 0 11789000 19235000 159 1340 158 696;697;698;699 445;446;447;448 445 4 ADPAFGLESSGIAGTTSDEPERIEESGNDEAR Unmodified 3306.476 0.47601606 539 Q8TAQ2-2;F8VTJ5;Q8TAQ2;F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 132.97 132.66 3 8.4479E-33 2 86057 20150910_Q1_SA_NiHu_Masterprac_group13_B 80.664 62.824 28540000 0 18553000 0 9987100 0 0 160 539 159 700;701 449;450 449 2 ADPATPGRVHYHPDSPAK Unmodified 1914.9337 0.93365835 716 O43435-2;O43435;O43435-3 TBX1 T-box transcription factor TBX1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 64.218 55.986 4 0.0018893 1 39356 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.511 53.419 10787000 911550 1342200 2271800 0 2291800 3969900 161 716 160 702;703;704;705;706 451 451 1 ADPDGPEAQAEACSGER Unmodified 1758.7115 0.71150549 323 D6RC52;D6RCB9;Q9NX24 NHP2 H/ACA ribonucleoprotein complex subunit 2 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 72.859 65.865 2 0.0037868 4 48036 20150910_Q1_SA_NiHu_Masterprac_group10_C 49.708 47.745 5186600 1236000 861630 0 0 1657000 1432000 162 323 161 707;708;709;710 452;453;454;455 455 4 ADPENIKSEGDGTQDIVDK Unmodified 2029.944 0.94400785 1201 Q5UIP0-2;Q5UIP0 RIF1 Telomere-associated protein RIF1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 93.785 86.245 3 0.039807 1 65354 20150910_Q1_SA_NiHu_Masterprac_group13_C 33.666 23.163 6220200 0 1414700 1125100 576740 1593600 1510100 163 1201 162 711;712;713;714;715 456 456 1 ADPQGPELGEACEKGNMLK Unmodified 2042.9401 0.94012522 835 P13682 ZNF35 Zinc finger protein 35 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 2 1 114.67 104.41 3 0.0030588 2 71372 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.708 38.333 16298000 3221800 2971700 2702100 1691200 2703600 3007300 164 835 163 716;717;718;719;720;721;722 457;458 457 2 ADQDRLDLEER Unmodified 1358.6426 0.64262129 1110 Q14683;G8JLG1 SMC1A Structural maintenance of chromosomes protein 1A yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 78.346 74.134 3 0.012843 1 51399 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.815 39.494 2574900 419940 1048300 0 0 0 1106700 165 1110 164 723;724;725 459 459 1 ADQGDGPEGSGRACSTVEGK Unmodified 1976.8494 0.84939596 535 Q96RL1;F8VQY2;Q96RL1-3;F2Z2T8;Q96RL1-2;Q96RL1-4;H7BXP9 UIMC1 BRCA1-A complex subunit RAP80 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 52.511 46.615 3 0.00081998 3 33295 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.688 44.827 18535000 0 2639800 1990100 1150400 3173000 9581800 166 535 165 726;727;728;729;730 460;461;462 461 3 ADSEPESPLNASYVYK Unmodified 1768.8156 0.81555986 190 B7Z5N6;Q5T1V6-2;Q5T1V6 DDX59 Probable ATP-dependent RNA helicase DDX59 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.43 130.82 2 0.033164 1 84296 20150910_Q1_SA_NiHu_Masterprac_group10_B 38.14 27.326 1066900 0 1066900 0 0 0 0 167 190 166 731 463 463 1 ADSLLAVVK Unmodified 914.54368 0.54368251 1097;1137 Q14151;A8MXT5;C9JPX0;Q15424;F5H1L1;F5H0H3;F5GZU3;B7Z2F6 SAFB2;SAFB Scaffold attachment factor B2;Scaffold attachment factor B1 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 132.86 122.15 2 3.4616E-69 7 79147 20150910_Q1_SA_NiHu_Masterprac_group10_C 149.82 87.352 554000000 51046000 59583000 64009000 37188000 41338000 300830000 168 1097;1137 167 732;733;734;735;736;737;738 464;465;466;467;468;469;470 469 7 ADSRDPASDQMQHWK Acetyl (Protein N-term) 1812.7849 0.78494521 785 P04040 CAT Catalase yes yes 1 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 100.48 91.392 3 0.00027259 1 68490 20150910_Q1_SA_NiHu_Masterprac_group13_C 91.789 74.996 4144900 0 810440 1752800 1345200 236540 0 169 785 168 739;740;741;742 471 471 1 ADTEEEFLAFRK Unmodified 1454.7042 0.70415892 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 1 132.35 121.78 2;3 0 11 84320 20150910_Q1_SA_NiHu_Masterprac_group10_B 267.02 219.95 555600000 119040000 111880000 70961000 49808000 53175000 150730000 170 919;920 169 743;744;745;746;747;748;749;750;751;752;753;754 472;473;474;475;476;477;478;479;480;481;482 480 10 ADTEEEFLAFRKQTPSAGK Unmodified 2124.0487 0.048747692 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 1 129.62 120.2 3;4 0.00085837 8 81225 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.783 53.496 328780000 72113000 31626000 131520000 9708100 31773000 52043000 171 919;920 170 755;756;757;758;759;760;761;762;763 483;484;485;486;487;488;489;490 489 8 ADTTSTVTPVPGQEK Unmodified 1529.7573 0.7573167 1507 Q9H9B1-3;Q9H9B1;Q9H9B1-4;C9JD67;Q9H9B1-2 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 76.807 69.312 2 0.0016325 3 48042 20150910_Q1_SA_NiHu_Masterprac_group13_B 68.283 42.941 19696000 804620 2838800 2594000 2292200 5440800 5725500 172 1507 171 764;765;766;767;768;769 491;492;493 491 3 ADTTTGSKPTGVFSR Unmodified 1523.758 0.7579854 1310 Q8N9M1-3;Q8N9M1-2;Q8N9M1 C19orf47 Uncharacterized protein C19orf47 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 73.692 67.238 3 0.01736 1 53779 20150910_Q1_SA_NiHu_Masterprac_group13_C 43.914 21.838 5607800 1034200 0 1694800 543570 0 2335200 173 1310 172 770;771;772;773 494 494 1 ADVEEEFLAFRK Unmodified 1452.7249 0.72489436 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 135.54 124.24 3 1.4841E-07 5 82484 20150910_Q1_SA_NiHu_Masterprac_group15_C 103.21 60.37 298560000 5984200 0 257580000 28128000 6471900 387760 174 919;920 173 774;775;776;777;778 495;496;497;498;499 498 5 ADVEEEFLALRK Unmodified 1418.7405 0.74054442 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 2 1 3 136.65 130.79 2;3 6.3422E-166 7 86457 20150910_Q1_SA_NiHu_Masterprac_group10_B 169.21 65.135 808280000 28909000 700860000 0 67316000 0 11192000 175 919;920 174 779;780;781;782;783;784;785;786;787 500;501;502;503;504;505;506 504 5 ADVEEESLALR Unmodified 1230.6092 0.6091959 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 119.71 108.51 2 0.011767 3 71482 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.799 21.719 4477100 713920 710640 1219800 0 295630 1537100 176 919;920 175 788;789;790;791;792 507;508;509 508 3 ADVEEESLALRK Unmodified 1358.7042 0.70415892 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 3 2 98.08 89.333 2;3 0 13 67238 20150910_Q1_SA_NiHu_Masterprac_group13_C 242.97 177.28 545820000 80088000 77918000 106070000 42851000 99833000 139060000 177 919;920 176 793;794;795;796;797;798;799;800;801;802;803;804;805;806 510;511;512;513;514;515;516;517;518;519;520;521;522 513 12 ADVEGELLACR Unmodified 1231.5867 0.58668632 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 124.44 122.58 2 1.088E-49 6 82398 20150910_Q1_SA_NiHu_Masterprac_group13_C 136.96 102.2 62291000 0 9149100 0 2764900 0 50377000 178 919;920 177 807;808;809;810;811 523;524;525;526;527;528 524 6 ADVEGELLACRNLMPSAGK Unmodified 2029.9925 0.99249514 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 133.4 132.8 3 8.6255E-38 1 86448 20150910_Q1_SA_NiHu_Masterprac_group10_B 108.25 89.62 144550000 0 144550000 0 0 0 0 179 919;920 178 812 529 529 1 ADVERYIASVQGSTPSPR Unmodified 1931.9701 0.97010344 945 P49792;E9PGT0;F8WBP7 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 131.64 122.55 3 7.6075E-182 3 84157 20150910_Q1_SA_NiHu_Masterprac_group10_B 155.92 136.25 43085000 0 8982400 14265000 14963000 4874200 0 180 945 179 813;814;815;816 530;531;532 532 3 ADVERYIASVQGSTPSPRQK Unmodified 2188.1236 0.12364397 945 P49792;E9PGT0;F8WBP7 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 1 127.49 119.35 3;4 7.1544E-230 9 76690 20150910_Q1_SA_NiHu_Masterprac_group10_C 166.21 147.63 66077000 34541000 2073500 18316000 4687100 1833500 4626100 181 945 180 817;818;819;820;821;822;823;824;825 533;534;535;536;537;538;539;540;541 539 8 ADVLSGENAYMCAK Unmodified 1527.6698 0.66976402 1576 Q9P275;Q9P275-2;F5H3B9 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 124.92 113.7 2 5.8517E-05 4 76034 20150910_Q1_SA_NiHu_Masterprac_group10_C 91.845 72.078 21787000 6122800 0 4872000 1194500 2259400 7338200 182 1576 181 826;827;828;829;830 542;543;544;545 545 4 ADVTRLPATIAR Unmodified 1282.7357 0.73573382 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 110.72 103.06 3 0.00011302 1 70330 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.368 66.89 9410700 0 1116500 998000 0 0 7296200 183 486 182 831;832;833 546 546 1 ADVTRLPATLSR Unmodified 1298.7306 0.73064844 430 Q12873;E9PG89;Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 110.27 102.65 3 0.011936 1 70029 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.567 35.239 3506800 0 664790 229180 0 0 2612800 184 430 183 834;835;836 547 547 1 ADVVDSETVVR Unmodified 1188.5986 0.59863121 1498 Q9H6T0-2;Q9H6T0 ESRP2 Epithelial splicing regulatory protein 2 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 95.125 85.717 2 0.010802 1 63330 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.944 26.388 8309500 1012200 3388000 0 0 3909300 0 185 1498 184 837;838;839 548 548 1 ADVVDSETVVRAR Unmodified 1415.7369 0.73685603 1498 Q9H6T0-2;Q9H6T0 ESRP2 Epithelial splicing regulatory protein 2 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 90.846 83.101 3 5.7185E-35 3 56945 20150910_Q1_SA_NiHu_Masterprac_group15_B 123.67 79.304 31827000 2591400 6089900 8360600 3541800 5020400 6222800 186 1498 185 840;841;842;843;844;845 549;550;551 550 3 AEAAALSTQCR Unmodified 1176.5557 0.55572054 1498 Q9H6T0-2;Q9H6T0 ESRP2 Epithelial splicing regulatory protein 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 58.535 50.739 2 0.0038421 1 36425 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.245 55.99 3196400 0 725610 393860 0 718030 1358900 187 1498 186 846;847;848;849 552 552 1 AEAALEEESR Unmodified 1103.5095 0.50948185 85 C0IMW5;B4DFR4;Q969G3-2;B4DGM3;Q969G3 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 58.801 46.018 2 0.034866 1 37987 20150910_Q1_SA_NiHu_Masterprac_group13_C 55.353 31.629 264950 0 0 264950 0 0 0 188 85 187 850 553 553 1 AEAAVVAVAEK Unmodified 1056.5815 0.58152458 1293 Q8IZQ5 SELH Selenoprotein H yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 85.191 78.624 2 0.0054001 3 54710 20150910_Q1_SA_NiHu_Masterprac_group10_C 72.29 41.678 6189800 1856700 0 0 1356400 2112400 864340 189 1293 188 851;852;853;854 554;555;556 556 3 AEAEALYQTK Unmodified 1122.5557 0.55570376 300;305 Q86Y46;CON__Q32MB2;H0YIC5;B4DQ49;Q86Y46-2;Q8N1N4-2;Q8N1N4;CON__Q8N1N4-2;CON__Q7RTT2;Q3SY84;CON__Q3SY84;Q7RTS7;CON__Q7RTS7;F8W1S1;F8VS64;P19013;CON__P19013;F5H8K9 KRT73;KRT78;KRT71;KRT74;KRT4 Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 78;Keratin, type II cytoskeletal 71;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 4 no no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 74.919 66.622 2 1.9966E-05 2 53108 20150910_Q1_SA_NiHu_Masterprac_group13_C 111.27 66.285 13766000 0 0 6739600 326990 640030 6058900 + 190 305;300 189 855;856;857;858 557;558 557 2 AEAESLYQSK Unmodified 1124.535 0.53496832 789 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 65.719 58.625 2 4.8592E-15 7 41125 20150910_Q1_SA_NiHu_Masterprac_group13_B 120.06 98.39 540030000 13687000 90670000 284070000 46490000 44356000 60750000 + 191 789 190 859;860;861;862;863;864 559;560;561;562;563;564;565 559 7 AEASSANLGSGCEEK Acetyl (Protein N-term) 1550.6519 0.65186535 1197 Q6P1K2-3;Q5TCK1;Q6P1K2;Q6P1K2-2;Q6P1K2-5 PMF1 Polyamine-modulated factor 1 yes no 1 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 84.591 74.405 2 5.4008E-06 5 53049 20150910_Q1_SA_NiHu_Masterprac_group10_C 92.38 79.232 12686000 3394500 0 1663300 0 5457100 2171100 192 1197 191 865;866;867;868;869 566;567;568;569;570 570 5 AEAVVNTVDISER Unmodified 1401.71 0.70997257 1289 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 121.52 106.84 2 0.0022324 1 71372 20150910_Q1_SA_NiHu_Masterprac_group10_C 67.234 42.819 450310 450310 0 0 0 0 0 193 1289 192 870 571 571 1 AECRYCGCAISR Unmodified 1501.6224 0.62243667 737 O75132 ZBED4 Zinc finger BED domain-containing protein 4 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 56.51 54.528 3 0.022874 1 38735 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.897 43.518 986080 0 251340 0 0 0 734740 194 737 193 871;872 572 572 1 AECSIRLPK Unmodified 1072.5699 0.56991404 754 O94776;Q68DB1 MTA2;DKFZp686F2281 Metastasis-associated protein MTA2 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 86.97 77.745 2 2.8924E-29 3 60372 20150910_Q1_SA_NiHu_Masterprac_group13_C 135.43 93.08 75565000 0 14164000 22107000 0 841110 38453000 195 754 194 873;874;875;876 573;574;575 573 3 AECTARLPEASQSPLVLK Unmodified 1969.0303 0.030260856 1078 Q13330;Q13330-3;E7ESY4;E7EN71;H0Y4T7;F8W9Y9 MTA1 Metastasis-associated protein MTA1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 131.54 128.75 3 7.5604E-210 2 86735 20150910_Q1_SA_NiHu_Masterprac_group15_B 161.75 161.75 46165000 0 12989000 0 0 0 33176000 196 1078 195 877;878 576;577 576 2 AEDAVEAIRGLDNTEFQGK Unmodified 2061.9967 0.99671212 1457 Q9BWF3;E9PB51;Q9BQ04;E7EQS3 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 133.1 132.5 3 1.4034E-33 1 86052 20150910_Q1_SA_NiHu_Masterprac_group10_B 94.639 59.167 123200000 0 123200000 0 0 0 0 197 1457 196 879 578 578 0 AEDEPDAKSPK Acetyl (Protein N-term) 1227.5619 0.56191135 553 F8W689;P48382;B7Z848;F6TYI9;F6X9D6;F6R6G4;F6UE82;F6U6P3;F8WDU3;F8WFE4;F2Z2G0;F6S3S0;F6X8N2 RFX5 DNA-binding protein RFX5 yes no 1 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 49.032 40.977 2 0.0075759 2 29385 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.685 44.026 1931900 0 0 872440 0 394900 664510 198 553 197 880;881;882 579;580 579 1 AEDEWKAQVAR Unmodified 1301.6364 0.6364137 1121 Q14980-2;Q14980;F5H2L0;H0YFY6 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 77.902 70.459 2;3 7.3152E-20 9 48910 20150910_Q1_SA_NiHu_Masterprac_group15_B 119.22 72.427 22711000 2067900 2823200 4556100 3898300 4691500 4674500 199 1121 198 883;884;885;886;887;888;889;890;891;892;893 581;582;583;584;585;586;587;588;589 584 9 AEEDAALQAK Unmodified 1044.5088 0.50875357 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;H0YA99;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 50.375 44.551 2 0.0022251 4 32073 20150910_Q1_SA_NiHu_Masterprac_group10_B 102.06 57.684 6437500 1242200 1392500 2075100 458210 724810 544590 200 383;1082 199 894;895;896;897;898;899 590;591;592;593 592 4 AEEDTQFNYHRK Unmodified 1536.6957 0.69571949 1110 Q14683;H0Y7K8;E7EPI6 SMC1A Structural maintenance of chromosomes protein 1A yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 54.305 48.289 3 0.0016989 5 33880 20150910_Q1_SA_NiHu_Masterprac_group13_B 71.03 37.973 14049000 0 2001200 2208200 1769700 2381000 5689300 201 1110 200 900;901;902;903;904;905 594;595;596;597;598 594 4 AEEGIAAGGVMDVNTALQEVLK Acetyl (Protein N-term) 2256.1308 0.13076276 875 P25398 RPS12 40S ribosomal protein S12 yes yes 1 0 0 By MS/MS By matching By matching By matching By matching By matching 1 134.28 118.59 2 4.0087E-06 1 80271 20150910_Q1_SA_NiHu_Masterprac_group10_C 62.082 51.101 32718000 32718000 0 0 0 0 0 202 875 201 906 599 599 1 AEEHQRQNINKFER Unmodified 1797.887 0.88704251 212 B7ZM82;B3KVH1;O95785;O95785-2 WIZ Protein Wiz yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 44.804 38.612 4 0.021129 1 32497 20150910_Q1_SA_NiHu_Masterprac_group15_C 43.761 31.243 1107400 0 0 0 0 500270 607150 203 212 202 907;908 600 600 1 AEEIVAAQEK Unmodified 1086.5557 0.55570376 476 H0Y4W2;Q9Y4A5-2;F2Z2U4;Q9Y4A5 TRRAP Transformation/transcription domain-associated protein yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 67.242 53.057 2 0.01037 1 43824 20150910_Q1_SA_NiHu_Masterprac_group13_C 73.499 32.776 547460 0 0 547460 0 0 0 204 476 203 909 601 601 1 AEELGQELK Unmodified 1015.5186 0.51858998 1121 Q14980-2;Q14980;F5H2L0;H0YFY6 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 84.234 75.16 2 0.011126 3 52040 20150910_Q1_SA_NiHu_Masterprac_group10_B 83.647 30.154 12720000 1081300 2275000 1539300 0 2169000 5655500 205 1121 204 910;911;912;913;914 602;603;604 603 3 AEEPSDLIGPEAPK Unmodified 1451.7144 0.71438925 1303 Q8N5F7 NKAP NF-kappa-B-activating protein yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 117.76 114.97 2 0.0014162 2 78221 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.456 43.542 2793200 0 1161400 0 0 0 1631800 206 1303 205 915;916 605;606 605 2 AEEVATFFAK Unmodified 1111.555 0.55497548 825 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.2 131.59 2 1.1378E-23 2 85072 20150910_Q1_SA_NiHu_Masterprac_group10_B 126.39 89.831 9081200 0 9081200 0 0 0 0 207 825 206 917 607;608 607 2 AEEYTEETEER Unmodified 1384.563 0.56303357 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 56.119 49.81 2 4.4886E-13 7 41578 20150910_Q1_SA_NiHu_Masterprac_group15_C 117.09 99.88 10043000 493420 1501800 2097500 1082100 2037000 2830900 208 1639 207 918;919;920;921;922;923;924 609;610;611;612;613;614;615 612 7 AEFCNKSKQPGLAR Unmodified 1604.8093 0.80930946 426 E9PFZ0;P38398-4;P38398-2;P38398;E9PFC7;E7EP70;F8W8H7;E7EMP0;E9PH68;E7EWN5;Q3B891;C9IZW4;H0Y8D8 BRCA1 Breast cancer type 1 susceptibility protein yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 55.287 50.313 4 0.025344 1 36037 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.825 23.752 9064300 1671700 1428700 0 1419400 2519100 2025300 209 426 208 925;926;927;928;929 616 616 1 AEFEEQNVRK Unmodified 1248.6099 0.6098646 1588 Q9UFW8;C9JUJ0 CGGBP1 CGG triplet repeat-binding protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 52.776 46.88 3 0.0043835 2 33740 20150910_Q1_SA_NiHu_Masterprac_group10_B 82.645 51.167 3201900 0 643680 921880 349170 413760 873440 210 1588 209 930;931;932;933;934 617;618 618 2 AEFVEVTK Unmodified 921.48075 0.48074791 294 CON__P02769 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 87.716 80.898 1;2 3.0224E-167 7 60338 20150910_Q1_SA_NiHu_Masterprac_group15_C 180.87 112.08 1045400000 133370000 136090000 86222000 59505000 211570000 418640000 + 211 294 210 935;936;937;938;939;940;941 619;620;621;622;623;624;625 623 7 AEGDSAGTAGTPGGTPAGDK Unmodified 1715.7598 0.75983589 217 Q92925-3;B9EGA3;Q92925-2;Q92925 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 50.685 45.186 2 0.0073794 3 32298 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.164 30.242 3581800 0 503030 0 0 839790 2238900 212 217 211 942;943;944 626;627;628 626 3 AEGFVDALHR Unmodified 1113.5567 0.55670682 1394 Q96I24;A6NJ37 FUBP3 Far upstream element-binding protein 3 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 109.67 99.723 2 0.018011 2 73190 20150910_Q1_SA_NiHu_Masterprac_group13_C 65.278 45.963 3946800 0 630270 513030 0 1136800 1666700 213 1394 212 945;946;947;948 629;630 629 2 AEGFVDALHRVR Unmodified 1368.7262 0.72623176 1394 Q96I24;A6NJ37 FUBP3 Far upstream element-binding protein 3 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 2 118.5 108.66 2;3 0.0018183 10 76601 20150910_Q1_SA_NiHu_Masterprac_group15_C 77.288 50.282 105700000 0 9645100 20510000 5057800 22059000 48426000 214 1394 213 949;950;951;952;953;954;955;956 631;632;633;634;635;636;637;638;639;640 637 10 AEGGGGGGRPGAPAAGDGK Unmodified 1537.7233 0.72333123 1022 Q00839;B3KX72 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 27.575 26.788 3 0.011796 1 18536 20150910_Q1_SA_NiHu_Masterprac_group10_B 40.602 20.76 793090 0 419700 0 142660 0 230730 215 1022 214 957;958;959 641 641 1 AEGPGRGDEPSPS Unmodified 1254.5477 0.54765827 576 G3V1I6;H0Y2W2;Q9NVI7-2;E9PDY1;Q9NVI7 ATAD3A ATPase family AAA domain-containing protein 3A yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 43.413 38.19 2 0.0057854 2 28395 20150910_Q1_SA_NiHu_Masterprac_group10_C 69.03 53.886 4659800 438060 659670 861910 488910 957700 1253500 216 576 215 960;961;962;963;964;965 642;643 643 2 AEGTVFTEEDFQK Unmodified 1499.678 0.67800374 1269 Q86WX3 RPS19BP1 Active regulator of SIRT1 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 122.37 122.37 2 0.028651 1 78428 20150910_Q1_SA_NiHu_Masterprac_group13_B 45.115 33.675 355230 0 0 0 355230 0 0 217 1269 216 966 644 644 1 AEHLESPQLGGK Unmodified 1264.6412 0.64116473 1562 Q9NYD6;D6RAG4 HOXC10 Homeobox protein Hox-C10 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 2 1 2 2 75.524 67.44 2;3 0.00018861 3 46832 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.477 67.996 9118100 649530 2214900 267620 0 2175600 3810400 218 1562 217 967;968;969;970;971;972;973;974 645;646;647 645 3 AEKPDATADAEPDANQK Unmodified 1769.8068 0.80678609 1422 Q96T58 SPEN Msx2-interacting protein yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 45.293 40.931 3 0.0074263 2 29131 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.438 31.354 1684000 0 0 0 485740 428900 769360 219 1422 218 975;976;977 648;649 648 2 AEKQVETEEAGVVTTATASVNLK Unmodified 2374.2227 0.22274889 741 O75475;O75475-2 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 132.33 130.48 3 0 3 84970 20150910_Q1_SA_NiHu_Masterprac_group13_B 191.73 161.59 112940000 0 16482000 0 24757000 0 71696000 220 741 219 978;979;980 650;651;652 650 3 AELDDTPMR Unmodified 1046.4703 0.47025958 865 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 75.351 74.096 2 0.036082 1 51282 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.78 55.467 683080 0 0 0 0 0 683080 221 865 220 981 653 653 1 AELEIANPPELQK Unmodified 1450.7668 0.76675917 516 Q9Y4C1;F5H4E6;F5H070;F8WE62 KDM3A Lysine-specific demethylase 3A yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 132.66 114.67 2 0.015732 1 83528 20150910_Q1_SA_NiHu_Masterprac_group13_C 68.044 46.373 7768300 0 0 7768300 0 0 0 222 516 221 982 654 654 0 AELIKTHHNDTELIRK Unmodified 1917.0432 0.043208804 129 F8W720;B4DUT7;P49915 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 2 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 76.182 66.106 4 0.011618 2 46430 20150910_Q1_SA_NiHu_Masterprac_group13_B 43.69 29.116 3692900 1043000 0 1192600 983850 473450 0 223 129 222 983;984;985;986 655;656 655 2 AELLLLK Unmodified 798.52149 0.52149051 1340 Q8WUA4;Q8WUA4-2 GTF3C2 General transcription factor 3C polypeptide 2 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 133.52 115.68 2 4.7708E-07 1 82612 20150910_Q1_SA_NiHu_Masterprac_group15_C 119.56 119.56 59855000 0 0 0 0 59855000 0 224 1340 223 987 657 657 1 AELNSTTEELHK Unmodified 1370.6678 0.66777341 767 O95235;B4DL79 KIF20A Kinesin-like protein KIF20A yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 2 98.061 96.253 3 0.013812 2 84049 20150910_Q1_SA_NiHu_Masterprac_group10_B 53.567 9.9627 2168000 0 2168000 0 0 0 0 225 767 224 988;989 658;659 659 2 AELNSTTEELHKYQK Unmodified 1789.8846 0.88464248 767 O95235;B4DL79 KIF20A Kinesin-like protein KIF20A yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 88.349 80.67 3 1.6944E-05 5 55449 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.689 74.698 22980000 2355800 2990100 4889200 2597800 3625700 6521400 226 767 225 990;991;992;993;994;995 660;661;662;663;664 662 5 AELQTALAHTQHAAR Unmodified 1616.8383 0.83830141 204 H0Y7B8;B7ZC06;Q08379 GOLGA2 Golgin subfamily A member 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 80.257 75.345 4 0.0067578 1 52264 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.351 28.227 3176400 227830 0 0 0 0 2948500 227 204 226 996;997 665 665 1 AELVQGQSAPVGMK Acetyl (Protein N-term) 1455.7392 0.73916421 1394 Q96I24 FUBP3 Far upstream element-binding protein 3 yes yes 1 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 133.33 124.22 2 3.9297E-20 3 86181 20150910_Q1_SA_NiHu_Masterprac_group10_B 107.46 55.393 156750000 0 54355000 54371000 29224000 18800000 0 228 1394 227 998;999;1000;1001 666;667;668 668 3 AELVQGQSAPVGMK Acetyl (Protein N-term);Oxidation (M) 1471.7341 0.73407884 1394 Q96I24 FUBP3 Far upstream element-binding protein 3 yes yes 1 1 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 2 120.84 120.29 2 0.0012123 3 77214 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.32 48.762 1871600 0 1871600 0 0 0 0 229 1394 227 1002;1003;1004 669;670;671 669 162 3 AELYKEPTNEELNRLR Unmodified 1974.0171 0.017053633 1497 Q9H6R4-4;Q9H6R4;Q9H6R4-2;G8JLK7;Q9H6R4-3 NOL6 Nucleolar protein 6 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 117.95 108.67 3 0.033481 1 71400 20150910_Q1_SA_NiHu_Masterprac_group10_B 44.968 34.594 4327400 0 2172000 0 0 2155400 0 230 1497 228 1005;1006 672 672 1 AENAGLSSTAGLLR Unmodified 1358.7154 0.7153923 848 P17275 JUNB Transcription factor jun-B yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 128.94 127.08 2 0.016499 2 81566 20150910_Q1_SA_NiHu_Masterprac_group10_B 46.68 20.698 16695000 0 6773800 0 1081100 0 8840400 231 848 229 1007;1008;1009 673;674 674 1 AENKYAGGNPVCVRPTPK Unmodified 1956.984 0.98397937 1124 Q15004;H0YMA4;H0YKX3 KIAA0101 PCNA-associated factor yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 2 77.116 70.523 3;4 0.00078461 6 49016 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.081 57.032 21295000 446920 4966500 4793200 2472800 1919000 6696800 232 1124 230 1010;1011;1012;1013;1014;1015;1016;1017;1018;1019 675;676;677;678;679;680 680 5 AENTTGNWLTAK Unmodified 1304.6361 0.63607935 1562 Q9NYD6 HOXC10 Homeobox protein Hox-C10 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 2 1 111.05 102.07 2 1.406E-07 4 74556 20150910_Q1_SA_NiHu_Masterprac_group13_C 105.19 73.713 21228000 1378400 3771100 2593600 1968700 3188500 8327900 233 1562 231 1020;1021;1022;1023;1024;1025;1026;1027 681;682;683;684 682 4 AENVVEPGPPSAKRPK Acetyl (Protein N-term) 1716.9159 0.91588303 1053 Q09472 EP300 Histone acetyltransferase p300 yes yes 1 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 89.529 82.089 3 0.012684 1 62875 20150910_Q1_SA_NiHu_Masterprac_group13_C 44.132 25.796 4386400 0 1089000 727900 578660 965500 1025300 234 1053 232 1028;1029;1030;1031;1032 685 685 1 AEPASVAAESLAGSRAR Acetyl (Protein N-term) 1683.854 0.85401105 1532 Q9NQT5-2;Q9NQT5 EXOSC3 Exosome complex component RRP40 yes no 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 132.48 122.06 2 0 4 83629 20150910_Q1_SA_NiHu_Masterprac_group13_C 197.73 173.79 105740000 16718000 20514000 43210000 21523000 3770000 0 235 1532 233 1033;1034;1035;1036;1037 686;687;688;689 687 4 AEPEALQSLRR Unmodified 1268.6837 0.68369824 15 A6NCU2;B7Z227;A6NHW8;Q8N5Y2-2;Q8N5Y2-3;Q8N5Y2;A6NLU8 MSL3 Male-specific lethal 3 homolog yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 95.502 87.573 3 0.0013212 4 59346 20150910_Q1_SA_NiHu_Masterprac_group10_B 86.898 49.298 12763000 1385000 1799900 1479900 828820 2040900 5228300 236 15 234 1038;1039;1040;1041;1042;1043 690;691;692;693 692 4 AEPPQAMNALMR Unmodified 1327.6377 0.63767603 243 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;C9JFV5;Q12906;G5E9M5;B4DFG4 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 130.43 122.28 2 1.5899E-05 3 85669 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.9 48.783 14431000 7162000 7269300 0 0 0 0 237 243 235 1044;1045;1046 694;695;696 694 3 AEPSEVDMNSPKSK Unmodified 1517.7032 0.70317264 1534 Q9NR30;Q3SWU7 DDX21 Nucleolar RNA helicase 2 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 1 1 1 56.143 51.151 3 0.0018185 5 35293 20150910_Q1_SA_NiHu_Masterprac_group10_C 67.234 67.234 6301300 2035600 1123100 0 680910 1767200 694650 238 1534 236 1047;1048;1049;1050;1051;1052;1053 697;698;699;700;701 700 5 AEPTAAPHPVLK Unmodified 1229.6768 0.67682195 170 Q86YP4;B5MC40;Q86YP4-2;B4DKZ7;F5H7D9;H7C3H1 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 1 2 2 77.568 69.436 2;3 0.0017864 8 48127 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.674 49.81 33626000 0 6654900 7905000 490600 736180 17839000 239 170 237 1054;1055;1056;1057;1058;1059;1060;1061;1062 702;703;704;705;706;707;708;709 707 8 AEPTAAPHPVLKQVIKPR Unmodified 1951.1367 0.13671526 170 Q86YP4;B5MC40;F5H7D9 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 3 2 97.898 90.712 3;4 6.7601E-08 7 62056 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.106 82.492 99778000 0 19140000 18435000 0 0 62203000 240 170 238 1063;1064;1065;1066;1067;1068;1069 710;711;712;713;714;715;716 714 7 AEPVEVVAPR Unmodified 1065.5819 0.58185893 815 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 1 98.562 89.316 2 0.015692 3 65646 20150910_Q1_SA_NiHu_Masterprac_group15_C 67.334 35.912 82574000 3696800 12368000 7020000 4782000 32710000 21997000 241 815 239 1070;1071;1072;1073;1074;1075;1076 717;718;719 719 3 AEPVEVVAPRGK Unmodified 1250.6983 0.69828568 815 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 78.671 71.143 2;3 0.001855 11 54702 20150910_Q1_SA_NiHu_Masterprac_group15_C 73.632 57.767 77211000 10888000 13918000 13015000 8423500 19783000 11184000 242 815 240 1077;1078;1079;1080;1081;1082;1083;1084;1085;1086;1087;1088 720;721;722;723;724;725;726;727;728;729;730 726 11 AEQLMSDENCFK Unmodified 1470.6119 0.61191479 1420 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 105.79 103.3 2 0.021901 1 70384 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.135 33.413 1898600 0 603730 0 0 0 1294900 243 1420 241 1089;1090 731 731 1 AEQMHQSFVAETSQR Unmodified 1747.7948 0.79478161 936 P49454 CENPF Centromere protein F yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 80.948 75.734 3 0.0051498 1 52267 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.495 40.177 4442000 0 777720 814470 256930 0 2592900 244 936 242 1091;1092;1093;1094 732 732 1 AERDSALETLQGQLEEK Unmodified 1915.9487 0.9486993 1121 Q14980-2;Q14980;F5H2L0;H0YFY6 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 2 1 1 132.28 130.74 2;3 3.5672E-73 5 87639 20150910_Q1_SA_NiHu_Masterprac_group15_B 126.25 67.786 110370000 0 77335000 0 16391000 0 16647000 245 1121 243 1095;1096;1097;1098 733;734;735;736;737 734 5 AEREVESGPRK Acetyl (Protein N-term) 1298.6579 0.65787742 1213 Q5VZL5-2;Q5VZL5 ZMYM4 Zinc finger MYM-type protein 4 yes no 1 0 2 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 44.776 42.394 3 0.0077882 3 29451 20150910_Q1_SA_NiHu_Masterprac_group13_B 68.515 40.155 7551100 1544400 1681300 0 2039600 0 2285800 246 1213 244 1099;1100;1101;1102 738;739;740 738 3 AERMGFTEVTPVTGASLRR Unmodified 2077.0739 0.073857005 352 P55265;P55265-4;E7ENU4;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 2 130.67 125.43 3;4 2.4568E-100 5 85635 20150910_Q1_SA_NiHu_Masterprac_group15_B 133.9 121.7 164290000 37577000 22193000 0 33649000 0 70874000 247 352 245 1103;1104;1105;1106;1107 741;742;743;744;745 742 5 AERMGFTEVTPVTGASLRR Oxidation (M) 2093.0688 0.068771627 352 P55265;P55265-4;E7ENU4;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 1 2 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 116.36 108.26 4 0.0028756 2 78218 20150910_Q1_SA_NiHu_Masterprac_group13_C 62.525 50.77 14138000 0 1184300 3335000 2659400 4075000 2884000 248 352 245 1108;1109;1110;1111;1112 746;747 746 34 2 AERVHELNEEIGK Unmodified 1522.774 0.77396981 186 B7Z500;Q9Y383-2;Q9Y383;B7Z4Q3 LUC7L2;C7orf55 Putative RNA-binding protein Luc7-like 2;UPF0562 protein C7orf55 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 1 1 71.029 63.581 3 8.0069E-24 5 44753 20150910_Q1_SA_NiHu_Masterprac_group10_B 113.52 75.324 35267000 4025100 6616600 5858800 1700300 5654600 11412000 249 186 246 1113;1114;1115;1116;1117;1118;1119 748;749;750;751;752 750 5 AESCGSGNSTGYQIR Unmodified 1585.6791 0.67908315 502 Q9H2U1-3;Q9H2U1-2;F5GZS0;Q9H2U1;E7EWK3 DHX36 Probable ATP-dependent RNA helicase DHX36 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 61.608 60.453 2 0.00044315 1 42408 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.354 55.809 1293300 0 0 0 0 0 1293300 250 502 247 1120 753 753 1 AESEASLLNVSTPK Unmodified 1444.7409 0.74093835 1415 Q96QE3;Q96QE3-2 ATAD5 ATPase family AAA domain-containing protein 5 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 130.16 120.49 2 9.4243E-125 4 77911 20150910_Q1_SA_NiHu_Masterprac_group10_C 154.13 125.85 39964000 9897100 0 18191000 1596800 0 10278000 251 1415 248 1121;1122;1123;1124 754;755;756;757 757 2 AESTLQNSSSAVHTESNK Unmodified 1888.8763 0.87626263 1504 Q9H967;C9JE56 WDR76 WD repeat-containing protein 76 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 56.732 49.604 2;3 0.00072362 5 35355 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.111 53.353 8613300 0 0 1145900 1892200 783290 4791900 252 1504 249 1125;1126;1127;1128;1129;1130 758;759;760;761;762 760 5 AESTLQNSSSAVHTESNKLQPK Unmodified 2355.1666 0.166631 1504 Q9H967;C9JE56 WDR76 WD repeat-containing protein 76 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 90.084 81.813 3;4 7.1681E-10 10 55650 20150910_Q1_SA_NiHu_Masterprac_group13_B 86.179 69.586 54621000 13698000 7878300 9870700 7576300 9934300 5663500 253 1504 250 1131;1132;1133;1134;1135;1136;1137;1138;1139;1140;1141 763;764;765;766;767;768;769;770;771;772 763 10 AETAAGVGR Acetyl (Protein N-term) 872.43519 0.4351947 1058 Q12788;H3BN88 TBL3 Transducin beta-like protein 3 yes no 1 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 60.086 58.004 2 0.015486 1 40850 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.654 36.74 1541400 0 460940 0 0 0 1080400 254 1058 251 1142;1143 773 773 1 AETAAGVGRFK Acetyl (Protein N-term) 1147.5986 0.59857163 1058 Q12788;H3BN88 TBL3 Transducin beta-like protein 3 yes no 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 104.51 94.283 2 1.2282E-42 7 63871 20150910_Q1_SA_NiHu_Masterprac_group10_C 136.49 84.321 38312000 5414000 6229200 4182000 0 7312700 15174000 255 1058 252 1144;1145;1146;1147;1148;1149;1150 774;775;776;777;778;779;780 780 7 AETLAGAMPNEAGGHPDAR Unmodified 1863.8534 0.85335912 1659 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 101.47 91.866 3 0.0010889 1 62801 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.817 45.931 1982100 0 0 0 0 572530 1409500 256 1659 253 1151;1152 781 781 1 AETNDSYHIILK Unmodified 1402.7092 0.70924429 1060 Q12800-3;Q12800;F8VX55 TFCP2 Alpha-globin transcription factor CP2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 104.52 102.18 2 0.020234 1 67525 20150910_Q1_SA_NiHu_Masterprac_group10_B 73.632 47.62 2200900 0 564650 0 0 0 1636200 257 1060 254 1153;1154 782 782 0 AETPTAAEDDNEGDKKK Unmodified 1817.8279 0.82791546 734 O60841 EIF5B Eukaryotic translation initiation factor 5B yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 32.235 24.364 4 0.0027363 1 20153 20150910_Q1_SA_NiHu_Masterprac_group13_C 51.591 45.477 291270 0 0 291270 0 0 0 258 734 255 1155 783 783 1 AEVEQVELPDGK Unmodified 1312.6511 0.65106071 422 E9PDD9;Q9NW13 RBM28 RNA-binding protein 28 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 112.94 103.57 2 0.0026021 2 75374 20150910_Q1_SA_NiHu_Masterprac_group13_C 73.927 50.459 4807500 1005500 1274300 940020 0 0 1587700 259 422 256 1156;1157;1158;1159 784;785 784 2 AEVEQVELPDGKK Unmodified 1440.746 0.74602373 422 E9PDD9;Q9NW13 RBM28 RNA-binding protein 28 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 99.142 87.687 3 0.036238 1 59294 20150910_Q1_SA_NiHu_Masterprac_group10_B 36.292 18.089 3632700 935840 893210 371000 0 1432600 0 260 422 257 1160;1161;1162;1163 786 786 1 AEVGEDSGAR Acetyl (Protein N-term) 1031.452 0.45196697 1017 P85037 FOXK1 Forkhead box protein K1 yes yes 1 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 52.64 50.708 2 0.039752 1 36535 20150910_Q1_SA_NiHu_Masterprac_group10_B 45.829 21.874 1490400 0 588990 0 0 0 901380 261 1017 258 1164;1165 787 787 1 AEVKERTEEPMETEPK Unmodified 1901.9041 0.90405729 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 2 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 60.871 52.825 3 0.0096712 2 37796 20150910_Q1_SA_NiHu_Masterprac_group10_B 54.402 44.591 16533000 0 3344700 4330600 0 642600 8215100 262 486 259 1166;1167;1168;1169 788;789 789 2 AEVQLSCCCACHSK Unmodified 1708.679 0.67896527 1461 Q9BX63-2;Q9BX63 BRIP1 Fanconi anemia group J protein yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 65.502 59.051 3 0.010191 2 41860 20150910_Q1_SA_NiHu_Masterprac_group10_B 49.298 46.485 1878500 0 471960 579640 0 0 826860 263 1461 260 1170;1171;1172 790;791 790 2 AEVVQVIRNPAK Unmodified 1322.767 0.76703394 143 B4DY99;Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 3 2 1 2 1 95.189 87.58 2;3 0.0023958 4 59621 20150910_Q1_SA_NiHu_Masterprac_group10_C 74.962 51.285 7720700 2194600 774900 0 671880 3037700 1041600 264 143 261 1173;1174;1175;1176;1177;1178;1179;1180;1181 792;793;794;795 795 4 AEVVQVIRNPAKLK Unmodified 1563.9461 0.94606094 143 B4DY99;Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 114.12 100.94 3 0.03351 1 67671 20150910_Q1_SA_NiHu_Masterprac_group10_C 50.467 36.036 1582600 1582600 0 0 0 0 0 265 143 262 1182 796 796 1 AEYGRLGLGEGAEEK Unmodified 1577.7686 0.76855009 271 C9JW69;P18754;P18754-2 RCC1 Regulator of chromosome condensation yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 3 1 1 1 1 2 98.902 90.374 2;3 1.0252E-09 6 61896 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.662 33.374 71204000 15202000 6336700 8137100 9251200 13165000 19111000 266 271 263 1183;1184;1185;1186;1187;1188;1189;1190;1191 797;798;799;800;801;802 797 4 AEYISLAEHEAK Unmodified 1359.667 0.66704513 512 F5H2B9;H0YNH8;G3XAG2;Q9BZF9 UACA Uveal autoantigen with coiled-coil domains and ankyrin repeats yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 107.46 98.681 3 0.0098026 3 67295 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.52 32.047 5926000 660150 1219000 1078900 505750 956070 1506100 267 512 264 1192;1193;1194;1195;1196;1197 803;804;805 804 3 AEYLASIFGTEK Acetyl (Protein N-term) 1369.6765 0.67654718 1024 Q01081-3;Q8WU68-3;Q8WU68-2;Q8WU68;Q01081-2;Q01081 U2AF1;U2AF1L4 Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit yes no 1 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 134.39 127.3 2 1.2259E-97 3 80414 20150910_Q1_SA_NiHu_Masterprac_group10_C 150.51 120.51 118610000 27947000 23210000 0 0 0 67453000 268 1024 265 1198;1199;1200 806;807;808 808 3 AEYSYVK Acetyl (Protein N-term) 900.4229 0.42289868 1106 Q14331;E9PI42 FRG1 Protein FRG1 yes no 1 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 104.46 94.786 1 0.0016778 4 68809 20150910_Q1_SA_NiHu_Masterprac_group15_C 114.78 66.934 24767000 2258700 0 7392900 2661100 5100200 7354200 269 1106 266 1201;1202;1203;1204;1205 809;810;811;812 811 4 AFAFQASQDK Unmodified 1111.5298 0.52982336 114 B4DPR4;C9J494;Q9H000 MKRN2 Probable E3 ubiquitin-protein ligase makorin-2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 1 98.608 89.325 2 0.0093219 4 61157 20150910_Q1_SA_NiHu_Masterprac_group10_C 76.228 49.786 5785500 1357200 1432800 1236700 653760 1105100 0 270 114 267 1206;1207;1208;1209;1210;1211 813;814;815;816 816 4 AFAMIIDK Unmodified 907.48372 0.48372479 1135;548 F8VZX2;Q15366-4;Q15366-5;Q15366-3;Q15366;Q15366-2;H3BRU6;G3V0E8;B4DXP5;B4DRD7;F8W0G4;B4DLC0;F8VXH9;F8W1G6;H3BND9;Q15365 PCBP2;PCBP1 Poly(rC)-binding protein 2;Poly(rC)-binding protein 1 no no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 132.08 129.3 2 0.0063921 3 87484 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.815 70.921 112190000 0 46394000 0 0 0 65795000 271 548;1135 268 1212;1213 817;818;819 817 3 AFANLRK Acetyl (Protein N-term) 860.48684 0.48683634 711 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 1 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 105.48 94.123 2 0.0081283 2 70072 20150910_Q1_SA_NiHu_Masterprac_group13_C 95.957 50.876 13009000 881460 0 2674200 2618600 6834300 0 272 711 269 1214;1215;1216;1217 820;821 820 2 AFASTGLESGASGR Unmodified 1309.6262 0.62624295 1199 Q5TGY3 AHDC1 AT-hook DNA-binding motif-containing protein 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 84.629 82.697 2 0.014379 1 56701 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.621 30.896 1563300 0 386730 0 0 0 1176500 273 1199 270 1218;1219 822 822 1 AFAVQSAVR Unmodified 947.51886 0.51886475 1113 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 95.232 87.27 2 0.0065883 2 59868 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.265 51.619 7526800 967850 803600 658980 686410 2271200 2138900 274 1113 271 1220;1221;1222;1223;1224;1225 823;824 824 2 AFAVSSSLITHSR Unmodified 1374.7256 0.72556306 1524 Q9NPC7-3;Q9NPC7-2;Q9NPC7 MYNN Myoneurin yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 125.59 120.28 3 0.0012646 5 76993 20150910_Q1_SA_NiHu_Masterprac_group10_C 79.886 53.994 11720000 6584100 1681500 0 804670 0 2650200 275 1524 272 1226;1227;1228;1229 825;826;827;828;829 829 5 AFAVSSSLITHSRK Unmodified 1502.8205 0.82052608 1524 Q9NPC7-3;Q9NPC7-2;Q9NPC7 MYNN Myoneurin yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 109.01 101.86 3 0.0003355 4 67650 20150910_Q1_SA_NiHu_Masterprac_group10_C 86.944 53.403 12288000 3017400 1647200 2172100 2478800 0 2973000 276 1524 273 1230;1231;1232;1233;1234 830;831;832;833 833 4 AFAYSSCLIRHQK Unmodified 1579.7929 0.79293112 1309 Q8N8Y5 ZFP41 Zinc finger protein 41 homolog yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 102.64 94.815 3 0.0012892 4 63364 20150910_Q1_SA_NiHu_Masterprac_group10_B 89.9 54.126 19093000 0 2591500 5149200 3946900 2720200 4685300 277 1309 274 1235;1236;1237;1238;1239 834;835;836;837 837 4 AFDHVLHLRPLSR Unmodified 1559.8685 0.86847932 1497 Q9H6R4-4;Q9H6R4;Q9H6R4-2;G8JLK7;Q9H6R4-3;F5H6M7 NOL6 Nucleolar protein 6 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 129.5 124.54 3 0.018911 1 84290 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.448 38.189 12477000 0 0 0 0 0 12477000 278 1497 275 1240 838 838 1 AFDTAGNGYCR Unmodified 1230.5088 0.50877035 934 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 76.411 67.312 2 6.7948E-20 1 46971 20150910_Q1_SA_NiHu_Masterprac_group15_B 119.53 106.57 3060300 0 513340 348010 0 401350 1797600 279 934 276 1241;1242;1243;1244 839 839 1 AFEDDAIQLVARK Unmodified 1474.778 0.77799256 1080 Q13415 ORC1 Origin recognition complex subunit 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 132.98 130.2 3 4.1705E-24 2 88304 20150910_Q1_SA_NiHu_Masterprac_group15_B 113.38 76.015 41517000 0 5688300 0 0 0 35828000 280 1080 277 1245;1246 840;841 840 2 AFGGEEVILKGSPEEK Unmodified 1688.8621 0.86211612 1205 Q5VUA4 ZNF318 Zinc finger protein 318 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 118.26 117.91 3 0.0046251 1 76195 20150910_Q1_SA_NiHu_Masterprac_group10_B 51.03 28.039 1301200 0 940440 0 360720 0 0 281 1205 278 1247;1248 842 842 1 AFGYYGPLR Unmodified 1042.5236 0.52361577 160 B4E241;P84103 SFRS3;SRSF3 Serine/arginine-rich splicing factor 3 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 132.83 114.98 2 0.020359 1 81887 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.628 44.852 6215800 0 0 0 0 6215800 0 282 160 279 1249 843 843 1 AFHDPESAQQHFHRK Unmodified 1833.8659 0.86591314 436 Q9Y4E5-2;E9PH99;Q9Y4E5 ZNF451 Zinc finger protein 451 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 60.625 47.465 4 0.016324 2 39149 20150910_Q1_SA_NiHu_Masterprac_group13_C 39.947 27.169 3417400 0 0 2432700 0 984710 0 283 436 280 1250;1251 844;845 844 1 AFIQSANLVVHQR Unmodified 1481.8103 0.81029574 835 P13682;B4DUB8 ZNF35 Zinc finger protein 35 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 122.25 120.43 3 0.0012915 2 81888 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.021 69.689 7303900 0 2408600 0 1713300 0 3181900 284 835 281 1252;1253;1254 846;847 846 2 AFIVTDEDIRK Unmodified 1305.6929 0.69286595 1581 Q9UBB5 MBD2 Methyl-CpG-binding domain protein 2 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 116.1 106.04 2;3 0.0022783 4 72520 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.062 57.963 30527000 0 6787200 5176900 0 1277000 17286000 285 1581 282 1255;1256;1257;1258;1259;1260;1261;1262 848;849;850;851 849 4 AFIVTDEDIRKQEER Unmodified 1847.9377 0.93774068 1581 Q9UBB5 MBD2 Methyl-CpG-binding domain protein 2 yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 115.82 105.77 4 0.0024239 2 69682 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.224 34.152 42430000 0 10808000 10058000 0 1109200 20456000 286 1581 283 1263;1264;1265;1266 852;853 853 2 AFKDTGKTPVEPEVAIHR Acetyl (Protein N-term) 2036.0691 0.069089203 979 P60866;P60866-2;E5RJX2;E5RIP1 RPS20 40S ribosomal protein S20 yes no 1 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 125.66 115.75 3;4 9.226E-09 8 76216 20150910_Q1_SA_NiHu_Masterprac_group10_C 94.325 76.568 284230000 162610000 10475000 48444000 27168000 23829000 11708000 287 979 284 1267;1268;1269;1270;1271;1272;1273;1274;1275;1276;1277 854;855;856;857;858;859;860;861 861 8 AFLDRPSQPTQETKK Unmodified 1744.9108 0.91079765 532 F6RIS4;Q9H3M7 TXNIP Thioredoxin-interacting protein yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 74.308 65.665 4 0.036736 1 51374 20150910_Q1_SA_NiHu_Masterprac_group15_C 37.654 21.835 3979600 602160 668310 412650 1018600 1277900 0 288 532 285 1278;1279;1280;1281;1282 862 862 1 AFLLSSCLVQHQRIHTGEK Unmodified 2223.1583 0.15825534 1406 Q96LW9;C9J423;Q6P178 ZSCAN31 Zinc finger and SCAN domain-containing protein 31 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 130.09 130.09 4 0.0011788 2 83102 20150910_Q1_SA_NiHu_Masterprac_group13_B 59.728 44.549 3025400 0 0 0 3025400 0 0 289 1406 286 1283 863;864 864 2 AFMGTPVQK Unmodified 977.50044 0.50043749 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 89.899 82.035 2 5.848E-106 10 56220 20150910_Q1_SA_NiHu_Masterprac_group15_B 164.96 102.3 406690000 48833000 57728000 61621000 25587000 47389000 165530000 290 919;920 287 1284;1285;1286;1287;1288;1289;1290 865;866;867;868;869;870;871;872;873;874 867 10 AFMGTPVQK Oxidation (M) 993.49535 0.49535211 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 1 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 60.326 55.051 2 0.034662 1 39173 20150910_Q1_SA_NiHu_Masterprac_group10_B 99.136 50.38 11680000 1415900 3224300 0 1350100 124430 5565000 291 919;920 287 1291;1292;1293;1294;1295 875 875 102 1 AFMVTDEDIRK Unmodified 1323.6493 0.64928657 776 O95983;O95983-2 MBD3 Methyl-CpG-binding domain protein 3 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 112.6 101.94 3 1.8058E-13 2 67435 20150910_Q1_SA_NiHu_Masterprac_group10_B 117.52 82.765 26704000 180290 6855700 4729900 0 321560 14616000 292 776 288 1296;1297;1298;1299;1300 876;877 877 2 AFNCGSNLLK Unmodified 1122.5492 0.5491786 1309 Q8N8Y5 ZFP41 Zinc finger protein 41 homolog yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 1 2 1 114.89 103.83 2 0.0020268 6 68587 20150910_Q1_SA_NiHu_Masterprac_group10_B 102.52 59.925 39795000 9522100 5472700 5512500 4349800 5992400 8945500 293 1309 289 1301;1302;1303;1304;1305;1306;1307;1308;1309 878;879;880;881;882;883 882 6 AFNCGSNLLKHQK Unmodified 1515.7616 0.76163099 1309 Q8N8Y5 ZFP41 Zinc finger protein 41 homolog yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 82.154 73.808 3 0.026905 2 51037 20150910_Q1_SA_NiHu_Masterprac_group13_B 45.891 19.137 3539900 0 0 2424500 1115500 0 0 294 1309 290 1310;1311 884;885 884 2 AFNGNTGLIQHLR Unmodified 1439.7633 0.76334555 1147 Q15776 ZKSCAN8 Zinc finger protein with KRAB and SCAN domains 8 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 123.08 120.65 3 0.036296 1 81886 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.767 22.631 1930900 0 0 0 467640 0 1463200 295 1147 291 1312;1313 886 886 1 AFNSVDPTFDNSVPSK Unmodified 1723.8053 0.80532952 1426 Q99543;Q99543-2;H7C3L7;C9IZ83;F5H621 DNAJC2 DnaJ homolog subfamily C member 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 130.88 130.27 2 0.036446 1 83623 20150910_Q1_SA_NiHu_Masterprac_group10_B 37.477 23.536 4667200 0 4667200 0 0 0 0 296 1426 292 1314 887 887 0 AFPNKQGYVLSSIEGR Unmodified 1764.9159 0.91588303 719 O43684-2;O43684;B4DDM6 BUB3 Mitotic checkpoint protein BUB3 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.48 130.87 3 0.00025169 1 84367 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.354 49.934 3017500 0 3017500 0 0 0 0 297 719 293 1315 888 888 1 AFPNPYADYNK Unmodified 1298.5932 0.5931519 441 E9PHS0;O43813;F8WDS9 LANCL1 LanC-like protein 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 126.26 115.98 2 0.010064 2 79828 20150910_Q1_SA_NiHu_Masterprac_group15_C 64.82 46.63 12886000 0 1958600 3985800 0 1208900 5732500 298 441 294 1316;1317;1318;1319 889;890 890 2 AFQEFIR Unmodified 909.47085 0.47085192 478 Q8IZ69-2;Q8IZ69;F2Z2W7 TRMT2A tRNA (uracil-5-)-methyltransferase homolog A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 124.06 119.3 2 0.03659 1 80890 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.244 41.848 3359900 0 0 0 0 0 3359900 299 478 295 1320 891 891 1 AFQLEEGEETEPDCK Unmodified 1780.7462 0.74615966 904 P38432 COIL Coilin yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 114.22 104.84 2 0.00075906 4 71481 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.968 68.185 4013600 919060 1120300 554110 0 0 1420200 300 904 296 1321;1322;1323;1324 892;893;894;895 893 4 AFRAVVSQHAR Unmodified 1240.6789 0.67888764 1351 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 53.431 47.339 3 4.119E-07 4 33914 20150910_Q1_SA_NiHu_Masterprac_group15_B 107.06 92.376 14393000 975500 2651100 3989700 1399300 1280700 4096200 301 1351 297 1325;1326;1327;1328;1329;1330 896;897;898;899 897 4 AFRDVYHLNR Unmodified 1289.6629 0.66290322 1094;219 Q14119;C6G496;P56270;G5E927;I3L2Z5;F5H7A6 VEZF1;MAZ Vascular endothelial zinc finger 1;Myc-associated zinc finger protein no no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 92.636 84.874 3 0.0030798 5 58236 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.096 69.066 123470000 11002000 3922000 8072900 10589000 32521000 57366000 302 1094;219 298 1331;1332;1333;1334;1335;1336 900;901;902;903;904 901 5 AFRDVYHLNRHK Unmodified 1554.8168 0.8167781 1094;219 Q14119;C6G496;P56270;G5E927;I3L2Z5;F5H7A6 VEZF1;MAZ Vascular endothelial zinc finger 1;Myc-associated zinc finger protein no no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 70.127 59.917 3 0.0090353 1 48844 20150910_Q1_SA_NiHu_Masterprac_group13_C 72.731 53.599 44597000 0 0 23248000 9291500 12057000 0 303 1094;219 299 1337;1338;1339 905 905 1 AFRQPASDALK Unmodified 1202.6408 0.6407708 1415 Q96QE3;Q96QE3-2 ATAD5 ATPase family AAA domain-containing protein 5 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 74.386 67.106 3 0.0021463 2 46791 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.713 67.427 8083400 0 2111600 1627900 451600 974210 2918100 304 1415 300 1340;1341;1342;1343;1344;1345 906;907 906 2 AFRTYHQLVLHSR Unmodified 1626.8743 0.87429298 740 O75362 ZNF217 Zinc finger protein 217 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 85.121 83.465 4 0.026304 1 57246 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.282 39.191 1038900 0 0 0 0 0 1038900 305 740 301 1346 908 908 1 AFSASNGLTR Unmodified 1022.5145 0.51450765 1406 Q96LW9;C9J423;Q6P178 ZSCAN31 Zinc finger and SCAN domain-containing protein 31 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 81.079 73.534 2 0.00089383 5 50859 20150910_Q1_SA_NiHu_Masterprac_group13_B 105.17 67.354 33592000 3439500 2904200 4746900 4174900 7162900 11164000 306 1406 302 1347;1348;1349;1350;1351;1352 909;910;911;912;913 909 5 AFSCFSHLIVHQR Unmodified 1600.7933 0.79326547 835 P13682;B4DUB8 ZNF35 Zinc finger protein 35 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 130.97 128.48 3 0.0013707 2 86125 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.69 63.489 13880000 0 0 0 5033600 0 8846700 307 835 303 1353;1354 914;915 915 2 AFSCLSSLQGHIK Unmodified 1446.7289 0.72893388 491 Q15973-4;F5GXU3;Q15973-1;Q5T2V5;Q15973 ZNF124 Zinc finger protein 124 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 130.54 129.94 3 0.0018604 1 83411 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.023 46.746 1300200 0 1300200 0 0 0 0 308 491 304 1355 916 916 1 AFSHSSNLILHQR Unmodified 1508.7848 0.78480927 74 B3KRF7;E9PC66;P17029 ZKSCAN1 Zinc finger protein with KRAB and SCAN domains 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 86.266 81.027 3 0.0037296 1 55195 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.088 50.829 5440600 0 1138000 885570 370270 0 3046800 309 74 305 1356;1357;1358;1359 917 917 1 AFSQNSGLINHQR Unmodified 1470.7328 0.7327737 844 P17028 ZNF24 Zinc finger protein 24 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 78.005 70.798 2;3 0.00028949 7 49197 20150910_Q1_SA_NiHu_Masterprac_group10_B 93.839 80.11 24098000 0 4265900 4716700 1960300 3724400 9430400 310 844 306 1360;1361;1362;1363;1364;1365;1366;1367 918;919;920;921;922;923;924 924 7 AFSQNSSLVQHER Unmodified 1501.7274 0.72735397 847 P17098;B4DSF4 ZNF8 Zinc finger protein 8 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 75.174 67.73 3 0.00048016 4 48505 20150910_Q1_SA_NiHu_Masterprac_group10_C 92.856 80.436 7554400 1060900 1425600 1020600 611960 1340800 2094500 311 847 307 1368;1369;1370;1371;1372;1373 925;926;927;928 928 4 AFSQNTGLILHQR Unmodified 1483.7896 0.7895603 1147 Q15776 ZKSCAN8 Zinc finger protein with KRAB and SCAN domains 8 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 117.22 106.97 3 0.0089607 1 71285 20150910_Q1_SA_NiHu_Masterprac_group10_C 54.772 6.2587 5350400 1065900 1015500 1277600 982730 1008600 0 312 1147 308 1374;1375;1376;1377;1378 929 929 1 AFSQRAHLAHHNR Unmodified 1543.7869 0.78687496 508 Q96SK3-2;F5H141;Q96SK3 ZNF607 Zinc finger protein 607 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 78.191 69.921 3 0.024412 1 49675 20150910_Q1_SA_NiHu_Masterprac_group10_C 46.73 10.409 1752400 1752400 0 0 0 0 0 313 508 309 1379 930 930 1 AFSQSSDLIK Unmodified 1094.5608 0.56078914 646 H3BS42;Q9H5H4 ZNF768 Zinc finger protein 768 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 103.51 95.163 2 1.2161E-15 5 64977 20150910_Q1_SA_NiHu_Masterprac_group15_B 123.75 68.665 24374000 3066400 3212000 3339700 4035800 5685400 5034900 314 646 310 1380;1381;1382;1383;1384;1385 931;932;933;934;935 932 5 AFSQSSDLIR Unmodified 1122.5669 0.56693715 646 H3BS42;Q9H5H4;B7Z2Y7 ZNF768 Zinc finger protein 768 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 107.81 97.659 2 0.030524 1 70429 20150910_Q1_SA_NiHu_Masterprac_group15_C 57.149 14.958 7530600 1448700 0 454400 1108600 2048400 2470500 315 646 311 1386;1387;1388;1389;1390 936 936 1 AFSQSSDLIRHQR Unmodified 1543.7855 0.78553755 646 H3BS42;Q9H5H4;B7Z2Y7 ZNF768 Zinc finger protein 768 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 80.626 71.1 3 0.024214 1 49448 20150910_Q1_SA_NiHu_Masterprac_group10_B 46.796 14.807 3570300 0 1536100 0 0 2034200 0 316 646 312 1391;1392 937 937 1 AFSQSSDLTK Unmodified 1082.5244 0.52440364 74 B3KRF7;E9PC66;P17029 ZKSCAN1 Zinc finger protein with KRAB and SCAN domains 1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 69.015 60.969 2 0.0090532 2 49078 20150910_Q1_SA_NiHu_Masterprac_group13_C 76.927 40.48 6982800 0 0 3282900 511120 904640 2284200 317 74 313 1393;1394;1395;1396 938;939 938 2 AFSQSSHLYQHQR Unmodified 1587.7542 0.75423743 845 P17036 ZNF3 Zinc finger protein 3 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 56.759 52.258 3 0.017818 1 37377 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.712 33.966 1842800 0 303360 0 380930 387660 770870 318 845 314 1397;1398;1399;1400 940 940 1 AFSQSSSLCIHQR Unmodified 1519.7202 0.72016011 1296 Q8N3J9;F5H507 ZNF664 Zinc finger protein 664 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 90.006 82.235 2;3 3.0396E-11 8 56524 20150910_Q1_SA_NiHu_Masterprac_group15_B 113.22 101.31 43513000 7779900 6155900 6574600 3576900 6324900 13101000 319 1296 315 1401;1402;1403;1404;1405;1406;1407;1408;1409;1410;1411;1412;1413 941;942;943;944;945;946;947;948 944 6 AFSQSSTLAQHQR Unmodified 1459.7168 0.71678929 125 F5H290;P17097;B4DT08 ZNF7 Zinc finger protein 7 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 70.376 55.637 3 0.0018595 1 44894 20150910_Q1_SA_NiHu_Masterprac_group15_C 70.089 54.503 975520 0 0 0 0 975520 0 320 125 316 1414 949 949 1 AFSQSTSLCIHQR Unmodified 1533.7358 0.73581017 1296 Q8N3J9;F5H507 ZNF664 Zinc finger protein 664 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 97.508 87.993 3 2.5183E-05 5 66454 20150910_Q1_SA_NiHu_Masterprac_group13_C 96.334 36.359 13672000 1959100 2552000 2556900 0 2581500 4022000 321 1296 317 1415;1416;1417;1418;1419 950;951;952;953;954 950 5 AFSYSSQLAR Unmodified 1128.5564 0.55637247 835 P13682;B4DUB8 ZNF35 Zinc finger protein 35 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 105.6 98.646 2 3.5969E-05 2 67207 20150910_Q1_SA_NiHu_Masterprac_group15_B 109.83 79.691 10229000 0 0 3749900 1795400 0 4684200 322 835 318 1420;1421;1422 955;956 956 2 AFTCSSYLLIHQR Unmodified 1594.7926 0.79259677 835 P13682;B4DUB8 ZNF35 Zinc finger protein 35 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.47 130.86 3 0.010575 1 84331 20150910_Q1_SA_NiHu_Masterprac_group10_B 53.034 38.854 4146600 0 4146600 0 0 0 0 323 835 319 1423 957 957 1 AFTQCNQLK Unmodified 1108.5335 0.53352853 1524 Q9NPC7-3;Q9NPC7-2;Q9NPC7 MYNN Myoneurin yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 65.575 62.491 2 0.0066315 5 43847 20150910_Q1_SA_NiHu_Masterprac_group10_B 91.069 45.067 5494000 1099200 809770 0 973740 0 2611300 324 1524 320 1424;1425;1426;1427 958;959;960;961;962 960 5 AFTQSANLIVHQR Unmodified 1483.7896 0.7895603 835 P13682;B4DUB8 ZNF35 Zinc finger protein 35 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 2 2 112.55 104.04 2;3 0.0013419 5 71292 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.611 48.079 26288000 4627700 4657800 866810 449320 3107800 12579000 325 835 321 1428;1429;1430;1431;1432;1433;1434;1435;1436 963;964;965;966;967 964 4 AFTQSSNLTVHQK Unmodified 1459.7419 0.7419414 835 P13682;B4DUB8 ZNF35 Zinc finger protein 35 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 2 2 2 2 74.338 66.86 2;3 2.7248E-15 10 46633 20150910_Q1_SA_NiHu_Masterprac_group15_B 107.17 78.095 49152000 12311000 10502000 7730500 7352300 2040600 9215100 326 835 322 1437;1438;1439;1440;1441;1442;1443;1444;1445;1446;1447;1448;1449 968;969;970;971;972;973;974;975;976;977 973 10 AFTQSTNLIK Unmodified 1121.6081 0.60807369 1586 Q9UEG4 ZNF629 Zinc finger protein 629 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 109.5 100.67 2 0.016158 3 67122 20150910_Q1_SA_NiHu_Masterprac_group10_C 66.92 36.994 20982000 2443500 3138200 2731000 3098400 807060 8764000 327 1586 323 1450;1451;1452;1453;1454;1455 978;979;980 980 3 AFTVSSSLHNHVK Unmodified 1425.7365 0.7364621 977 P58317;B4DNH5 ZNF121 Zinc finger protein 121 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 1 1 81.703 75.536 2;3 0.0011643 4 57330 20150910_Q1_SA_NiHu_Masterprac_group15_C 75.739 56.243 16764000 0 2125200 1365300 4427300 5670400 3175800 328 977 324 1456;1457;1458;1459;1460;1461 981;982;983;984 983 4 AFTYSTSHAVSVK Unmodified 1396.6987 0.69867961 977 P58317;B4DNH5 ZNF121 Zinc finger protein 121 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 96.198 86.874 3 0.0033616 1 64235 20150910_Q1_SA_NiHu_Masterprac_group15_C 62.732 42.952 3425300 568560 0 0 0 1921700 935020 329 977 325 1462;1463;1464 985 985 1 AFVAIGDYNGHVGLGVK Unmodified 1715.8995 0.89950468 839 P15880;H0YEN5;E9PMM9;I3L404;E9PM36;E9PPT0 RPS2 40S ribosomal protein S2 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 133.48 133.17 3 8.9863E-59 1 86619 20150910_Q1_SA_NiHu_Masterprac_group13_B 124.16 89.126 71429000 0 24981000 0 46448000 0 0 330 839 326 1465;1466 986 986 1 AFVNSQIQGHKEMSK Unmodified 1702.8461 0.8460889 1657 Q9Y5X2 SNX8 Sorting nexin-8 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 77.143 66.08 3 0.016867 1 45931 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.132 24.455 1448100 0 0 171710 0 469620 806740 331 1657 327 1467;1468;1469 987 987 1 AFVQSGQLK Unmodified 976.53418 0.53418046 1247 Q7RTV3-2;Q7RTV3 ZNF367 Zinc finger protein 367 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 83.426 74.285 2 0.0059201 1 56627 20150910_Q1_SA_NiHu_Masterprac_group15_C 94.309 48.181 1888800 663820 364140 0 0 860820 0 332 1247 328 1470;1471;1472 988 988 1 AGAANSQLSTSQPSLR Unmodified 1586.8012 0.8012472 350 E7ENF1;G5EA44;Q96C57;F5H7W8;H0YF83 C12orf43 Uncharacterized protein C12orf43 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 84.837 82.855 2 0.0027343 1 56792 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.203 43.831 1195700 0 478930 0 0 0 716780 333 350 329 1473;1474 989 989 1 AGAEDDEEKGEGTPREEGK Unmodified 2002.8716 0.87157119 372 Q86VM9;E7ERS3;Q86VM9-2;H7BXJ7 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 34.168 29.747 4 0.00031032 6 25370 20150910_Q1_SA_NiHu_Masterprac_group15_C 68.845 57.305 13097000 1047000 1220100 1912000 2220700 2515900 4181800 334 372 330 1475;1476;1477;1478;1479;1480 990;991;992;993;994;995 994 6 AGAEGFVRVDRDYVLK Unmodified 1793.9424 0.94243213 1451 Q9BUP3;Q9BUP3-3 HTATIP2 Oxidoreductase HTATIP2 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 130.63 128.77 3 0.0037818 2 83240 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.102 35.155 13355000 0 3453600 0 2231200 0 7669800 335 1451 331 1481;1482;1483 996;997 997 2 AGAEREFRGLGDCLVK Unmodified 1776.8941 0.89410173 795 P05141 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 2 1 2 1 125.73 114.15 3;4 0.0045896 4 75818 20150910_Q1_SA_NiHu_Masterprac_group10_C 78.529 45.216 79276000 21676000 3634500 32165000 6412500 8056900 7331300 336 795 332 1484;1485;1486;1487;1488;1489;1490;1491 998;999;1000;1001 1001 4 AGALVDPKDAEGSTCLHLAAK Unmodified 2123.0681 0.068102925 1507 Q9H9B1-3;Q9H9B1;C9JD67 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 128.34 123.38 4 0.015602 1 83422 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.402 23.111 3783900 0 0 0 0 0 3783900 337 1507 333 1492 1002 1002 1 AGCTATCPVCFASASER Unmodified 1843.7651 0.76513774 473 Q8NB78-2;F2Z2A7;Q8NB78 KDM1B Lysine-specific histone demethylase 1B yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 117.54 108.18 2 0.0032362 3 74135 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.127 35.625 8790400 2357200 0 2237200 1169400 0 3026600 338 473 334 1493;1494;1495;1496 1003;1004;1005 1004 3 AGDEIDEPSERER Unmodified 1501.6645 0.66447894 123 B4DSM5;G3XAG1;Q96ME7;Q86XK6;B4E0X7 ZNF512 Zinc finger protein 512 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 50.719 48.937 3 0.012601 1 34796 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.237 34.427 1155400 0 225960 0 0 0 929400 339 123 335 1497;1498 1006 1006 1 AGEAAELQDAEVESSAK Unmodified 1703.785 0.78498801 376 E7ESW4;Q9NZT2-2;Q9NZT2 OGFR Opioid growth factor receptor yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 101.74 94.455 2 0.0022491 2 63434 20150910_Q1_SA_NiHu_Masterprac_group10_B 78.228 58.461 4406400 0 1282200 1570100 0 0 1554100 340 376 336 1499;1500;1501 1007;1008 1008 2 AGEGLGTSSGDAISGTDHNSLDSSLTR Unmodified 2604.1899 0.18994521 1608 Q9ULL5-3;Q9ULL5-2;A6NFN6;Q9ULL5 PRR12 Proline-rich protein 12 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 128.66 121.57 3 3.6141E-09 2 84365 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.561 45.676 22010000 3765300 1006800 0 0 0 17238000 341 1608 337 1502;1503;1504 1009;1010 1009 2 AGEGLGTSSGDAISGTDHNSLDSSLTREK Unmodified 2861.3275 0.32750133 1608 Q9ULL5-3;Q9ULL5-2;A6NFN6;Q9ULL5 PRR12 Proline-rich protein 12 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 1 1 1 124.21 113.23 3;4 3.0994E-30 5 80105 20150910_Q1_SA_NiHu_Masterprac_group13_C 87.457 72.076 27841000 7701700 2633000 14905000 0 0 2602100 342 1608 338 1505;1506;1507;1508;1509 1011;1012;1013;1014;1015 1011 5 AGELIGTCKGHQCSLK Unmodified 1757.8553 0.85527338 499 F5GZ90;Q9NZJ0;Q9NZJ0-2 DTL Denticleless protein homolog yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 72.358 62.858 3 0.019967 1 44039 20150910_Q1_SA_NiHu_Masterprac_group10_B 40.941 6.9734 1521200 0 982690 538550 0 0 0 343 499 339 1510;1511 1016 1016 1 AGELKVVNGAAASQPPSK Unmodified 1722.9264 0.92644771 746 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 85.885 78.29 3 8.4067E-22 6 54317 20150910_Q1_SA_NiHu_Masterprac_group10_C 102.57 87.283 20250000 3517700 4126600 2793200 1727900 3205700 4879100 344 746 340 1512;1513;1514;1515;1516;1517 1017;1018;1019;1020;1021;1022 1022 6 AGELTPEEEAQYKK Acetyl (Protein N-term) 1633.7835 0.78353145 1568 Q9NZT1 CALML5 Calmodulin-like protein 5 yes yes 1 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 107.39 97.466 2 0.00044009 2 66255 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.163 88.163 37312000 0 10176000 13790000 0 3015500 10331000 345 1568 341 1518;1519;1520;1521 1023;1024 1023 2 AGEQQETASRELVKEPAR Unmodified 1998.013 0.013030887 1121 Q14980-2;Q14980 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 2 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 74.102 66.691 4 0.0031343 2 52028 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.595 25.484 8546800 952340 2211400 1923200 524230 1707000 1228600 346 1121 342 1522;1523;1524;1525;1526;1527 1025;1026 1025 2 AGEQRAGSEVISR Unmodified 1358.6902 0.69024019 477 H0Y5J9;F2Z2W0;Q9H2D6-5;F8W6V6;Q9H2D6-3;Q9H2D6-2;Q9H2D6;F6WYE2;F6TR96 TRIOBP TRIO and F-actin-binding protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 49.986 43.342 3 0.020436 1 31136 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.532 26.59 899280 0 0 0 0 329820 569460 347 477 343 1528;1529 1027 1027 1 AGEVDVEQHTLAK Unmodified 1395.6994 0.69940789 761 O95067 CCNB2 G2/mitotic-specific cyclin-B2 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 3 2 3 77.418 70.672 2;3 2.4738E-09 8 48925 20150910_Q1_SA_NiHu_Masterprac_group15_B 103.97 71.986 31716000 7507400 2890000 3193600 6082100 7845200 4197500 348 761 344 1530;1531;1532;1533;1534;1535;1536;1537;1538;1539;1540;1541;1542;1543;1544;1545 1028;1029;1030;1031;1032;1033;1034;1035 1031 8 AGEVFIHK Unmodified 899.4865 0.48650199 1133 Q15233;F5GYZ3;C9JYS8;H7C367;C9IZL7 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 58.576 57.999 2 0.018279 1 40709 20150910_Q1_SA_NiHu_Masterprac_group13_B 81.296 39.867 2459600 0 0 0 1083100 0 1376500 349 1133 345 1546;1547 1036 1036 1 AGEVFIHKDK Unmodified 1142.6084 0.60840804 1133 Q15233;F5GYZ3;C9JYS8;H7C367;C9IZL7 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 46.884 40.819 2 0.03016 1 30045 20150910_Q1_SA_NiHu_Masterprac_group10_C 70.942 51.283 429210 429210 0 0 0 0 0 350 1133 346 1548 1037 1037 1 AGEVFIHKDKGFGFIR Unmodified 1819.9733 0.97333832 1133 Q15233;F5GYZ3;C9JYS8;H7C367;C9IZL7 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 130.95 130.95 4 0.0019341 1 83918 20150910_Q1_SA_NiHu_Masterprac_group13_B 68.044 54.879 5360900 0 0 0 5360900 0 0 351 1133 347 1549 1038 1038 1 AGEVICIDD Unmodified 990.43281 0.43281144 430 Q12873;E9PG89;Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 118.46 115.72 1 0.0014094 2 75489 20150910_Q1_SA_NiHu_Masterprac_group10_B 91.9 76.285 6359100 0 2337200 0 0 0 4021900 352 430 348 1550;1551 1039;1040 1040 2 AGFAGDDAPR Unmodified 975.44101 0.44100836 164 F5H0N0;B4E335;P63261;P60709;I3L3I4;G5E9R0;I3L3R2;E7EVS6;I3L3I0;I3L1U9;E7EQV5;Q5T8M8;A6NL76;B4DW52;P68133;P68032;Q5T8M7;F5H1C1;P63267;P62736;C9JUM1;C9JZR7;C9JTX5;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;I3L4N8;E9PG30;Q6S8J3;P0CG38;A5A3E0;F8WCH0;P0CG39 ACTG1;ACTB;ACTA1;ACTC1;ACTG2;ACTA2;POTEE;POTEI;POTEF;POTEJ Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member I;POTE ankyrin domain family member F;POTE ankyrin domain family member J yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 62.575 55.782 2 0.0078923 5 41403 20150910_Q1_SA_NiHu_Masterprac_group10_C 83.862 56.814 141050000 30273000 16243000 22402000 13818000 28157000 30157000 353 164 349 1552;1553;1554;1555;1556;1557 1041;1042;1043;1044;1045 1045 5 AGFAGDDAPRAVFPSIVGRPR Unmodified 2155.1287 0.12866977 164 F5H0N0;B4E335;P63261;P60709;I3L3I4;G5E9R0;I3L3R2;E7EVS6;I3L3I0;I3L1U9;E7EQV5;Q5T8M8;A6NL76;B4DW52;P68133;P68032;Q5T8M7;F5H1C1;P63267;P62736;C9JUM1;C9JZR7;C9JTX5;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;I3L4N8;E9PG30;Q6S8J3;P0CG38;A5A3E0;F8WCH0 ACTG1;ACTB;ACTA1;ACTC1;ACTG2;ACTA2;POTEE;POTEI;POTEF Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member I;POTE ankyrin domain family member F yes no 0 0 2 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 1 133.1 125.81 3;4 3.579E-05 6 86112 20150910_Q1_SA_NiHu_Masterprac_group13_B 73.76 57.916 259810000 0 47635000 83233000 89808000 39138000 0 354 164 350 1558;1559;1560;1561;1562 1046;1047;1048;1049;1050;1051 1047 6 AGGAAVVITEPEHTK Unmodified 1478.7729 0.77290718 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 86.169 78.466 2;3 2.1526E-56 14 54052 20150910_Q1_SA_NiHu_Masterprac_group15_B 129.76 110.52 182490000 22275000 50756000 16387000 15337000 21719000 56020000 355 1575 351 1563;1564;1565;1566;1567;1568;1569;1570;1571;1572;1573;1574;1575 1052;1053;1054;1055;1056;1057;1058;1059;1060;1061;1062;1063;1064;1065 1058 14 AGGAAVVITEPEHTKER Unmodified 1763.9166 0.91661131 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 2 2 3 77.046 70.112 3;4 0 14 49777 20150910_Q1_SA_NiHu_Masterprac_group10_C 195.87 172.28 697090000 184230000 157850000 101180000 86624000 70767000 96444000 356 1575 352 1576;1577;1578;1579;1580;1581;1582;1583;1584;1585;1586;1587;1588;1589;1590;1591 1066;1067;1068;1069;1070;1071;1072;1073;1074;1075;1076;1077;1078;1079 1078 14 AGGAAVVITEPEHTKERVK Unmodified 1991.08 0.079988241 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 3 2 2 78.716 71.38 3;4 1.9688E-37 13 56761 20150910_Q1_SA_NiHu_Masterprac_group13_C 109.48 49.75 141190000 23292000 39838000 25624000 22117000 9202800 21116000 357 1575 353 1592;1593;1594;1595;1596;1597;1598;1599;1600;1601;1602;1603;1604;1605;1606 1080;1081;1082;1083;1084;1085;1086;1087;1088;1089;1090;1091;1092 1084 13 AGGKPSQSPSQEAAGEAVLGAK Unmodified 2039.0283 0.028346601 666 H7C1H8;P00519;P00519-2 ABL1 Tyrosine-protein kinase ABL1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 94.811 86.932 3 3.4152E-15 7 59631 20150910_Q1_SA_NiHu_Masterprac_group10_C 90.397 61.757 15176000 2088500 2342500 2676700 1258800 2118300 4690700 358 666 354 1607;1608;1609;1610;1611;1612;1613 1093;1094;1095;1096;1097;1098;1099 1099 7 AGGRDCGTSVPQGLLK Unmodified 1614.8148 0.81478877 1505 Q9H9A6 LRRC40 Leucine-rich repeat-containing protein 40 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 107.97 97.697 3 0.017089 1 64918 20150910_Q1_SA_NiHu_Masterprac_group10_B 41.542 30.103 3710300 450610 802660 335620 0 333370 1788000 359 1505 355 1614;1615;1616;1617;1618 1100 1100 1 AGGVGLNLSAASR Unmodified 1171.6309 0.63093439 1107 Q14527;Q14527-2;H7C5K0 HLTF Helicase-like transcription factor yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 114.84 105.43 2 2.7567E-05 4 69629 20150910_Q1_SA_NiHu_Masterprac_group10_B 96.756 52.192 24699000 1069500 4178600 2321700 0 0 17130000 360 1107 356 1619;1620;1621;1622 1101;1102;1103;1104 1103 3 AGHLILQDR Unmodified 1021.5669 0.56687757 255 C9JJU9;Q96P11-2;G3V0G9;Q96P11;Q96P11-4;Q96P11-3;Q63ZY6;Q63ZY6-5;Q63ZY6-6;Q63ZY6-2 NSUN5;NSUN5P2 Putative methyltransferase NSUN5;Putative methyltransferase NSUN5C yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 66.653 66.076 2 0.014355 1 45938 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.113 19.521 837890 0 0 0 144370 0 693520 361 255 357 1623;1624 1105 1105 1 AGHSENGVEEDTEGRTGPK Unmodified 1968.8773 0.87732527 376 E7ESW4;Q9NZT2-2;Q9NZT2 OGFR Opioid growth factor receptor yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 2 2 2 43.595 38.395 3;4 0.00042619 3 27064 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.153 55.835 8757900 375230 2016000 1766900 903150 1017900 2678700 362 376 358 1625;1626;1627;1628;1629;1630;1631;1632;1633;1634;1635 1106;1107;1108 1107 3 AGIRAYPTVK Unmodified 1074.6186 0.61857879 1287 Q8IXB1;Q8IXB1-2;F8W884 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 74.723 67.295 2 0.0069689 1 46916 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.568 27.876 51417000 3925800 14658000 5320700 3823800 14199000 9489400 363 1287 359 1636;1637;1638;1639;1640;1641 1109 1109 1 AGITTTLNSR Unmodified 1032.5564 0.55637247 892 P33992;B1AHB1 MCM5 DNA replication licensing factor MCM5 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 82.253 75.108 2 0.0026343 2 51854 20150910_Q1_SA_NiHu_Masterprac_group15_B 100.88 68.128 17182000 1394000 3232200 0 0 3315200 9240300 364 892 360 1642;1643;1644;1645 1110;1111 1110 2 AGKFPSLLTHNENMVAK Unmodified 1855.9615 0.96145301 997 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 128.63 119.14 3;4 9.9348E-110 4 79820 20150910_Q1_SA_NiHu_Masterprac_group15_C 137.93 120.69 24963000 8313400 544990 2492300 1350900 7209700 5051400 365 997 361 1646;1647;1648;1649;1650;1651 1112;1113;1114;1115 1114 4 AGLESGAEPGDGDSDTTK Unmodified 1705.7279 0.72786706 733 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 64.946 58.047 2 0.0016684 1 41008 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.173 46.529 6312000 0 615410 473560 579350 2413700 2230000 366 733 362 1652;1653;1654;1655;1656 1116 1116 1 AGLESGAEPGDGDSDTTKK Unmodified 1833.8228 0.82283008 733 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 54.726 48.517 3 0.0067385 2 34601 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.855 40.537 11182000 1792000 1056400 649190 1228300 4017000 2439300 367 733 363 1657;1658;1659;1660;1661;1662 1117;1118 1117 1 AGLESGAEPGDGDSDTTKKK Unmodified 1961.9178 0.9177931 733 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 51.993 40.061 4 0.00085755 1 33725 20150910_Q1_SA_NiHu_Masterprac_group15_C 54.292 35.92 1176600 0 0 0 0 1176600 0 368 733 364 1663 1119 1119 1 AGLEVLGSSDPTTSASR Unmodified 1646.8111 0.81114318 42 A8MTM6 DLGAP5 Disks large-associated protein 5 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 123.67 118.91 2 0.022505 1 80727 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.338 11.371 1814000 0 0 0 0 0 1814000 369 42 365 1664 1120 1120 1 AGLNCSTENMPIK Oxidation (M) 1449.6592 0.65919933 587 H0YJS4;G3V4T5;P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 0 1 0 By MS/MS By matching By matching By matching By matching By matching 1 76.851 68.581 3 0.022701 1 48950 20150910_Q1_SA_NiHu_Masterprac_group10_C 48.948 13.271 0 0 0 0 0 0 0 370 587 366 1665 1121 1121 63 1 AGLNYHTMAEHSAKPSDAEASEGGEQEER Unmodified 3100.3428 0.34283382 1402 Q96KM6 ZNF512B Zinc finger protein 512B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 90.572 82.843 4;5 6.1496E-12 11 56797 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.291 63.291 36881000 5642600 4940700 8346400 3891900 5829100 8230600 371 1402 367 1666;1667;1668;1669;1670;1671;1672;1673;1674;1675;1676;1677 1122;1123;1124;1125;1126;1127;1128;1129;1130;1131;1132 1125 8 AGLNYHTMAEHSAKPSDAEASEGGEQEERER Unmodified 3385.4865 0.48653794 1402 Q96KM6 ZNF512B Zinc finger protein 512B yes yes 0 0 2 By MS/MS By matching By matching By MS/MS By matching By matching 2 2 1 2 1 90.535 79.869 5;6 2.5823E-05 2 54508 20150910_Q1_SA_NiHu_Masterprac_group13_B 42.93 39.614 19833000 4838700 0 6170800 2702500 3718100 2402700 372 1402 368 1678;1679;1680;1681;1682;1683;1684;1685 1133;1134 1133 2 AGLQFPVGR Unmodified 943.52395 0.52395013 792;816 Q99878;Q96KK5;Q9BTM1;Q16777;Q93077;Q7L7L0;Q6FI13;P20671;P0C0S8;P04908;Q96QV6;P16104;Q9BTM1-2;C9JE22;A8MQC5;Q8IUE6;Q71UI9;P0C0S5;Q71UI9-2;C9J0D1 HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST1H2AC;HIST3H2A;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AB;HIST1H2AA;H2AFX;H2AFV;HIST2H2AB;H2AFZ Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E;Histone H2A type 1-A;Histone H2A.x;Histone H2A.V;Histone H2A type 2-B;Histone H2A.Z;Histone H2A no no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 2 1 1 129.24 124.87 2 2.1975E-12 4 85445 20150910_Q1_SA_NiHu_Masterprac_group15_B 124.08 59.816 41057000 10784000 15507000 0 969030 0 13798000 373 792;816 369 1686;1687;1688;1689;1690 1135;1136;1137;1138 1135 4 AGLSPANCQSDRVNLEK Unmodified 1857.9003 0.90030932 1113 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 95.157 87.194 3 0.00058287 2 59739 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.578 63.405 13137000 2428300 2469500 1817100 2081500 2223900 2116700 374 1113 370 1691;1692;1693;1694;1695;1696 1139;1140 1140 2 AGLVIGKGGETIK Unmodified 1241.7343 0.73433683 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 3 2 97.962 89.2 2;3 1.072E-109 13 60671 20150910_Q1_SA_NiHu_Masterprac_group13_B 152.4 65.488 1156700000 81652000 152470000 119990000 55650000 341050000 405840000 375 1366 371 1697;1698;1699;1700;1701;1702;1703;1704;1705;1706;1707;1708;1709;1710 1141;1142;1143;1144;1145;1146;1147;1148;1149;1150;1151;1152;1153 1142 13 AGLVIGKGGETIKQLQER Unmodified 1896.0793 0.079259959 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 6 3 127.42 115.86 3;4 2.9023E-155 16 80990 20150910_Q1_SA_NiHu_Masterprac_group13_C 151.31 118.56 1580500000 636770000 104490000 530840000 19836000 117470000 171080000 376 1366 372 1711;1712;1713;1714;1715;1716;1717;1718;1719;1720;1721;1722;1723;1724;1725;1726;1727 1154;1155;1156;1157;1158;1159;1160;1161;1162;1163;1164;1165;1166;1167;1168;1169 1156 15 AGLYGLPR Unmodified 845.47594 0.4759373 934 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 113.25 109.19 2 0.029454 1 74923 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.342 35.898 1030900 0 0 0 0 0 1030900 377 934 373 1728 1170 1170 1 AGNLGGGVVTIER Unmodified 1241.6728 0.67279921 897 P35268 RPL22 60S ribosomal protein L22 yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 117.1 107.87 2 0.0022314 3 76264 20150910_Q1_SA_NiHu_Masterprac_group15_C 70.889 39.82 9017800 1745400 1082100 841560 543020 2353000 2452800 378 897 374 1729;1730;1731;1732;1733;1734 1171;1172;1173 1172 3 AGPEGIEPR Unmodified 924.46649 0.46649483 1095 Q14146 URB2 Unhealthy ribosome biogenesis protein 2 homolog yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 63.554 56.678 2 0.032961 1 40140 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.184 25.373 6119700 443580 792910 967310 465380 1302700 2147800 379 1095 375 1735;1736;1737;1738;1739;1740 1174 1174 1 AGPEGTSQEIPK Unmodified 1212.5986 0.59863121 1428 Q99575;E5RK39 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 70.647 63.199 2 6.5082E-27 6 50931 20150910_Q1_SA_NiHu_Masterprac_group13_C 123.26 92.187 27378000 4075300 4141700 2312000 2190500 6996500 7662000 380 1428 376 1741;1742;1743;1744;1745;1746;1747 1175;1176;1177;1178;1179;1180 1176 6 AGPGSEELTVTNAR Unmodified 1400.6896 0.68957148 1456 Q9BW19 KIFC1 Kinesin-like protein KIFC1 yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 93.426 85.58 2 2.0283E-05 3 58129 20150910_Q1_SA_NiHu_Masterprac_group10_B 94.023 74.924 11942000 299230 3405500 1086900 296700 1019500 5834400 381 1456 377 1748;1749;1750;1751;1752;1753 1181;1182;1183 1183 3 AGPGSEELTVTNARYVPVSCEK Unmodified 2363.1427 0.14272443 1456 Q9BW19 KIFC1 Kinesin-like protein KIFC1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 130.05 129.44 3 0.0044447 1 82870 20150910_Q1_SA_NiHu_Masterprac_group10_B 45.844 22.186 2651000 0 2651000 0 0 0 0 382 1456 378 1754 1184 1184 1 AGPGSLELCGLPSQK Unmodified 1512.7606 0.76062794 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 3 1 133.45 121.4 2 0 10 85045 20150910_Q1_SA_NiHu_Masterprac_group13_B 292.16 245.21 504140000 160200000 91646000 48108000 73561000 22241000 108380000 383 1111 379 1755;1756;1757;1758;1759;1760;1761;1762;1763 1185;1186;1187;1188;1189;1190;1191;1192;1193;1194 1185 10 AGPNASIISLK Unmodified 1069.6132 0.61315906 1477 Q9H0A0;E7ESU4;E9PMN9 NAT10 N-acetyltransferase 10 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 123.16 120.53 2 0.034398 1 81645 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.301 14.703 4405900 0 174560 0 0 0 4231400 384 1477 380 1764;1765 1195 1195 0 AGPNASIISLKSDK Unmodified 1399.7671 0.76709352 1477 Q9H0A0;E7ESU4;E9PMN9 NAT10 N-acetyltransferase 10 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 2 2 108.9 98.418 2;3 0.0011283 5 65792 20150910_Q1_SA_NiHu_Masterprac_group10_C 73.927 44.015 16391000 2798400 3953100 962360 0 5035000 3642700 385 1477 381 1766;1767;1768;1769;1770;1771;1772;1773;1774;1775 1196;1197;1198;1199;1200 1200 5 AGPSRTVGLFLQGGK Unmodified 1486.8256 0.82561145 918 P43304;P43304-2;F8W6E4 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 130.65 125.22 3 0.00065951 2 82722 20150910_Q1_SA_NiHu_Masterprac_group10_B 81.185 43.822 3851300 1121200 1532600 0 1197500 0 0 386 918 382 1776;1777;1778 1201;1202 1201 2 AGPVAVQVK Unmodified 867.5178 0.51780212 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 69.959 66.876 2 0.0085293 3 47876 20150910_Q1_SA_NiHu_Masterprac_group10_C 87.181 45.733 28240000 6793300 6770200 0 2233500 0 12443000 387 383;1082 383 1779;1780;1781;1782 1203;1204;1205 1205 3 AGQCVIGLQMGTNK Unmodified 1475.7225 0.72246829 80 E7ENR3;B4DDF4;Q99439;B4DUT8;H3BTZ5;H3BVI6 CNN2 Calponin-2 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 126.17 116.7 2 2.7898E-229 5 81984 20150910_Q1_SA_NiHu_Masterprac_group13_C 177.93 136.37 86329000 15771000 8552800 34524000 3181000 4543500 19757000 388 80 384 1783;1784;1785;1786;1787;1788 1206;1207;1208;1209;1210 1207 5 AGQPHSSSDAAQAPAEQPHSSSDAAQAPCPR Unmodified 3112.3653 0.36530059 594 G5E9E2;Q5J9I4;P29372-2;P29372;A2IDA3 MPG DNA-3-methyladenine glycosylase yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 68.852 61.574 4 1.238E-27 5 48811 20150910_Q1_SA_NiHu_Masterprac_group15_C 75.156 75.156 54512000 4439100 8243900 8344500 4337300 8431700 20716000 389 594 385 1789;1790;1791;1792;1793;1794 1211;1212;1213;1214;1215 1214 5 AGQVMCVAQGSGHTHSVGTVCCSR Unmodified 2545.1043 0.10426399 1058 Q12788 TBL3 Transducin beta-like protein 3 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 2 1 1 2 86.772 79.667 3;4 0.00015196 3 54817 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.488 52.391 12970000 2522600 1575500 1807600 0 1396500 5668300 390 1058 386 1795;1796;1797;1798;1799;1800;1801 1216;1217;1218 1218 3 AGSGAPGGTSKGPAEESR Unmodified 1614.7598 0.75977631 666 H7C1H8;P00519;P00519-2 ABL1 Tyrosine-protein kinase ABL1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 33.117 28.073 3 0.013373 1 22366 20150910_Q1_SA_NiHu_Masterprac_group13_C 40.693 26.68 3012900 420870 623840 967600 0 185970 814610 391 666 387 1802;1803;1804;1805;1806 1219 1219 1 AGSISSEEVDGSQGNMMR Unmodified 1853.7884 0.7883756 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 97.403 95.321 2 0.026855 1 63739 20150910_Q1_SA_NiHu_Masterprac_group10_B 36.637 24.588 2017400 0 1054300 0 0 0 963140 392 1325 388 1807;1808 1220 1220 1 AGSPDVLRCSSQGHRK Unmodified 1753.8642 0.86419858 1320 Q8NDX6 ZNF740 Zinc finger protein 740 yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 43.916 38.722 4 0.0051774 2 27442 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.527 48.527 9999700 0 2538500 2932500 1313300 1356600 1858800 393 1320 389 1809;1810;1811;1812;1813 1221;1222 1221 2 AGSQLGPGYQHHAQPK Unmodified 1674.8227 0.82265134 660 Q02241-2;H7BYN4;Q02241;B4E1K0 KIF23 Kinesin-like protein KIF23 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 47.466 41.642 3;4 4.2259E-18 9 29024 20150910_Q1_SA_NiHu_Masterprac_group13_B 102.52 74.169 28227000 2420900 3329300 4848500 2213500 4851400 10563000 394 660 390 1814;1815;1816;1817;1818;1819;1820;1821;1822;1823;1824 1223;1224;1225;1226;1227;1228;1229;1230;1231 1223 9 AGSSWQCDTCLLQNK Unmodified 1766.7716 0.77160333 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 130.9 129.05 2 1.5504E-124 4 83447 20150910_Q1_SA_NiHu_Masterprac_group10_B 149.3 122.36 34404000 0 25565000 0 2077200 0 6761500 395 531 391 1825;1826;1827 1232;1233;1234;1235 1235 4 AGSSWQCDTCLLQNKVTDNK Unmodified 2324.0525 0.052529216 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 131.76 114.02 3 0.016257 1 80847 20150910_Q1_SA_NiHu_Masterprac_group15_C 38.696 14.857 1309400 0 0 0 0 1309400 0 396 531 392 1828 1236 1236 1 AGSTSWTGFQTK Unmodified 1269.599 0.59896556 422 E9PDD9;Q9NW13 RBM28 RNA-binding protein 28 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 112.03 101.69 2 0.0039606 4 74307 20150910_Q1_SA_NiHu_Masterprac_group13_C 66.708 50.787 8180500 733480 0 1587700 1845800 1320700 2692800 397 422 393 1829;1830;1831;1832;1833 1237;1238;1239;1240 1239 4 AGTCCANCQTTTTTLWR Unmodified 2000.8503 0.85026435 869 P23769 GATA2 Endothelial transcription factor GATA-2 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 111.79 109.16 2 0.0039082 1 74715 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.395 41.532 895950 0 356700 0 0 0 539250 398 869 394 1834;1835 1241 1241 1 AGTCCANCQTTTTTLWRR Unmodified 2156.9514 0.95137538 869 P23769 GATA2 Endothelial transcription factor GATA-2 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 103.21 94.921 3 0.018702 1 63508 20150910_Q1_SA_NiHu_Masterprac_group10_B 34.851 15.361 4565900 886050 1158600 1546700 0 0 974570 399 869 395 1836;1837;1838;1839 1242 1242 1 AGTGVDNVDLEAATRK Unmodified 1615.8166 0.81656291 711 O43175;Q5SZU1 PHGDH D-3-phosphoglycerate dehydrogenase yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 95.62 93.262 3 0.00012775 1 63734 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.354 51.587 4031800 0 0 0 0 0 4031800 400 711 396 1840 1243 1243 1 AGVIGLTQTAAR Unmodified 1156.6564 0.65642086 1349 Q92506 HSD17B8 Estradiol 17-beta-dehydrogenase 8 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 107.05 102.46 2 0.0040963 1 69977 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.842 36.298 1731300 282240 192540 0 323560 0 932950 401 1349 397 1841;1842;1843;1844 1244 1244 1 AGVNTVTTLVENKK Unmodified 1472.8199 0.81985737 991 P62424;Q5T8U2;Q5T8U3 RPL7A 60S ribosomal protein L7a yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 114.94 105.53 3 0.023188 2 70732 20150910_Q1_SA_NiHu_Masterprac_group10_C 38.376 21.123 3724800 1105100 675290 383270 0 0 1561100 402 991 398 1845;1846;1847;1848 1245;1246 1246 2 AGVPGVAAPGAPAAAPPAK Unmodified 1568.8675 0.86747627 962 P53350;I3L387;Q58A51 PLK1;Plk-1 delta Serine/threonine-protein kinase PLK1 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 115.06 106.99 2;3 0.00061653 6 73216 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.574 64.266 67966000 0 12928000 9246400 4708200 13667000 27416000 403 962 399 1849;1850;1851;1852;1853;1854;1855;1856;1857;1858 1247;1248;1249;1250;1251;1252 1249 6 AGVPLPPNLKPAPPPTIEEK Unmodified 2064.1619 0.16192696 854 P18583-2;P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;H7C2G8;H7C1M2 SON Protein SON yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.73 132.13 3 0.0001346 1 85739 20150910_Q1_SA_NiHu_Masterprac_group10_B 67.252 54.002 7037900 0 7037900 0 0 0 0 404 854 400 1859 1253 1253 1 AGVQADEDEDGDEKDEK Unmodified 1848.7497 0.74972472 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 38.736 33.512 3 0.0017864 4 22528 20150910_Q1_SA_NiHu_Masterprac_group13_B 57.703 54.352 7177100 623260 0 2607000 927400 789850 2229600 405 487 401 1860;1861;1862;1863;1864 1254;1255;1256;1257 1255 4 AGVQSGTNALLVVK Unmodified 1355.7773 0.77726428 564 F8W9Q2;Q8N7H5-2;Q8N7H5 PAF1 RNA polymerase II-associated factor 1 homolog yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.5 126.53 2 0.027511 1 86353 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.726 17.856 1965900 0 0 0 0 0 1965900 406 564 402 1865 1258 1258 0 AGVRPSSSGSAWEACSEAPSK Unmodified 2119.9593 0.95928076 1059 Q12789-3;Q12789;H7BYG6 GTF3C1 General transcription factor 3C polypeptide 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 91.499 82.55 3 9.3217E-33 2 56596 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.62 82.617 1707900 0 0 0 0 342670 1365200 407 1059 403 1866;1867 1259;1260 1260 2 AGVSVKPFQVK Unmodified 1158.6761 0.67609367 1035 Q02880-2;Q02880;E9PCY5 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 107.14 96.916 2 3.3076E-05 1 65944 20150910_Q1_SA_NiHu_Masterprac_group15_B 105.4 69.732 5926000 0 0 1899600 0 0 4026400 408 1035 404 1868;1869 1261 1261 1 AGVVNGTGAPGQSPGAGR Unmodified 1551.7754 0.7753668 1078 Q13330;Q13330-3;E7ESY4;E7EN71;H0Y4T7;Q13330-2 MTA1 Metastasis-associated protein MTA1 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 67.778 61.193 2 0.0080565 3 49347 20150910_Q1_SA_NiHu_Masterprac_group13_C 43.794 33.445 8160700 0 2115700 1629600 0 0 4415400 409 1078 405 1870;1871;1872 1262;1263;1264 1262 3 AGYSQGATQYTQAQQTR Unmodified 1857.8606 0.86055299 1403 Q96KR1;B5MEH6 ZFR Zinc finger RNA-binding protein yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 3 3 79.143 70.881 2;3 0.0013492 12 49383 20150910_Q1_SA_NiHu_Masterprac_group10_B 74.147 57.573 160590000 24008000 24036000 19303000 12720000 28533000 51986000 410 1403 406 1873;1874;1875;1876;1877;1878;1879;1880;1881;1882;1883;1884;1885;1886;1887 1265;1266;1267;1268;1269;1270;1271;1272;1273;1274;1275;1276 1273 12 AGYSTDESSSSSLHATR Unmodified 1754.7707 0.77073493 950 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 66.145 55.985 3 0.00047268 1 39483 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.59 74.024 2237800 0 0 501830 0 473790 1262200 411 950 407 1888;1889;1890 1277 1277 1 AHAYGDPNAGLNSQLHYK Unmodified 1954.9286 0.92857298 1591 Q9UGU0-2;Q9UGU0 TCF20 Transcription factor 20 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 97.715 92.3 3 0.00084057 1 63246 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.576 56.372 4436100 0 1352700 615400 395620 0 2072400 412 1591 408 1891;1892;1893;1894 1278 1278 1 AHLHAQAKPYENISLCQAK Unmodified 2178.1004 0.10040611 357 G3V2F4;E7EPD8;Q9NUW8;G3V2J6;G3V2U6;Q9BRS7 TDP1 Tyrosyl-DNA phosphodiesterase 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 2 1 2 93.333 87.639 3;4 0.00045864 3 59862 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.326 66.694 34013000 0 3736800 6877100 3944300 6216600 13239000 413 357 409 1895;1896;1897;1898;1899;1900;1901 1279;1280;1281 1279 2 AHLRGLGGLAS Unmodified 1050.5934 0.59342667 1313 Q8NAF0 ZNF579 Zinc finger protein 579 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 95.255 87.635 2 0.010299 2 66371 20150910_Q1_SA_NiHu_Masterprac_group13_C 79.489 70.001 7941800 0 1264800 1043200 896080 1152900 3584800 414 1313 410 1902;1903;1904;1905;1906 1282;1283 1282 2 AHLRHLGVSDPDAK Unmodified 1514.7954 0.79537396 212 B7ZM82 WIZ yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 55.231 48.179 3 0.0011287 3 36337 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.705 41.03 5934300 802010 0 0 0 2443500 2688800 415 212 411 1907;1908;1909 1284;1285;1286 1284 3 AHNAGAAAAAGTHSAK Acetyl (Protein N-term) 1446.6964 0.6963882 1326 Q8NFD5;Q8NFD5-2;Q8NFD5-3 ARID1B AT-rich interactive domain-containing protein 1B yes no 1 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 1 40.452 36.054 2;3 0.0006276 6 25285 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.011 41.001 5088400 1046400 351860 0 1352000 1498600 839570 416 1326 412 1910;1911;1912;1913;1914;1915;1916 1287;1288;1289;1290;1291;1292 1289 6 AHNLNVHMSMVHPLTQTQDK Unmodified 2300.1154 0.11540424 1300 Q8N554-2;Q8N554;A8K186 ZNF276 Zinc finger protein 276 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 116.98 108.9 4 0.00020999 3 74645 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.589 53.928 4935000 0 554100 1579200 363850 792810 1645000 417 1300 413 1917;1918;1919;1920;1921 1293;1294;1295 1295 3 AHPSRRVTLNTLQAWSK Unmodified 1964.0704 0.070426607 1069 Q13112 CHAF1B Chromatin assembly factor 1 subunit B yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 117.97 103.99 4 0.010217 1 69568 20150910_Q1_SA_NiHu_Masterprac_group10_C 42.242 32.743 1214900 1214900 0 0 0 0 0 418 1069 414 1922 1296 1296 1 AHQETFPSLCQLGK Unmodified 1614.7824 0.78242601 832;122 D6RBI3;B4DSI3;P10826-2;P10826;P10826-3;B7Z4F1;P13631-2;P13631 RARB;RARG Retinoic acid receptor beta;Retinoic acid receptor gamma no no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.08 130.48 3 0.0028863 1 83907 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.294 26.295 4892800 0 4892800 0 0 0 0 419 122;832 415 1923 1297 1297 1 AHQNLSHIPLAQQQLMK Unmodified 1956.0363 0.036349287 1522 Q9HCJ3-2;E9PE10 RAVER2 Ribonucleoprotein PTB-binding 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 121.06 115.21 4 0.0028257 1 78562 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.305 27.338 4146000 0 584980 0 299810 1811200 1449900 420 1522 416 1924;1925;1926;1927 1298 1298 1 AHQTGETVTGSGTQTQAGATQTVEQDSSHQTGR Unmodified 3355.5261 0.52609457 1582 Q9UBG3 CRNN Cornulin yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 89.947 73.905 3 3.6833E-14 1 56452 20150910_Q1_SA_NiHu_Masterprac_group15_C 52.814 37.84 0 0 0 0 0 0 0 421 1582 417 1928 1299 1299 1 AHYIEAEKLR Unmodified 1228.6564 0.65642086 1525 Q9NPC8 SIX2 Homeobox protein SIX2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 2 68.1 61.712 2;3 7.1736E-09 6 50130 20150910_Q1_SA_NiHu_Masterprac_group13_C 114.4 91.715 18090000 539950 1698200 2767400 790890 2852200 9441300 422 1525 418 1929;1930;1931;1932;1933;1934;1935 1300;1301;1302;1303;1304;1305 1300 6 AHYVEAEKLR Unmodified 1214.6408 0.6407708 1139 Q15475 SIX1 Homeobox protein SIX1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 57.21 50.768 3 0.0029118 4 36373 20150910_Q1_SA_NiHu_Masterprac_group10_B 95.523 72.638 10525000 841230 653540 934510 990720 2165300 4940200 423 1139 419 1936;1937;1938;1939;1940;1941 1306;1307;1308;1309 1307 4 AIAALISEK Unmodified 914.54368 0.54368251 1287 Q8IXB1;Q8IXB1-2;F8W884 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 3 1 115.75 107.31 1;2 0.0059535 7 73040 20150910_Q1_SA_NiHu_Masterprac_group15_B 104.2 64.945 271070000 0 58693000 24625000 18495000 26982000 142280000 424 1287 420 1942;1943;1944;1945;1946;1947;1948;1949;1950 1310;1311;1312;1313;1314;1315;1316 1313 7 AIACLLFGGSRK Unmodified 1291.7071 0.70707622 892 P33992;B1AHB1;E7EQY5 MCM5 DNA replication licensing factor MCM5 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 132.93 131.07 3 0.0026825 3 88385 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.224 35.84 50952000 0 13330000 0 2203100 0 35419000 425 892 421 1951;1952;1953 1317;1318;1319 1318 3 AIAESLNSCRPSDASATR Unmodified 1904.901 0.9010376 535 Q96RL1;F8VQY2;Q96RL1-3;F2Z2T8;Q96RL1-2;D6RC40;D6RCQ3 UIMC1 BRCA1-A complex subunit RAP80 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 88.105 79.242 3 0.0032695 3 55118 20150910_Q1_SA_NiHu_Masterprac_group10_C 50.305 38.765 21626000 3730800 5398800 5302500 3132300 4061200 0 426 535 422 1954;1955;1956;1957;1958 1320;1321;1322 1322 3 AIEAAPQEPEQK Unmodified 1309.6514 0.65139506 683 Q96CP2;I3L1Y9 FLYWCH2 FLYWCH family member 2 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 66.15 58.945 2 1.672E-26 7 41463 20150910_Q1_SA_NiHu_Masterprac_group15_B 120.55 110.98 142220000 21781000 18735000 16553000 10132000 30302000 44720000 427 683 423 1959;1960;1961;1962;1963;1964;1965 1323;1324;1325;1326;1327;1328;1329 1324 7 AIEAAPQEPEQKR Unmodified 1465.7525 0.75250609 683 Q96CP2;I3L1Y9 FLYWCH2 FLYWCH family member 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 57.46 51.162 3 0.00093755 2 36486 20150910_Q1_SA_NiHu_Masterprac_group15_B 85.522 71.278 5174500 0 740990 693730 433600 1111700 2194500 428 683 424 1966;1967;1968;1969;1970 1330;1331 1330 2 AIEDEGGNPDEIEITSEGNK Unmodified 2115.9444 0.94440178 1137 Q15424;F5H1L1;F5H0H3;B7Z959 SAFB Scaffold attachment factor B1 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 124.45 113.09 2 0.00016186 5 80421 20150910_Q1_SA_NiHu_Masterprac_group13_C 74.776 46.14 12506000 5468800 1919000 2888100 0 656010 1573700 429 1137 425 1971;1972;1973;1974;1975 1332;1333;1334;1335;1336 1332 5 AIEDEGGNPDEIEITSEGNKK Unmodified 2244.0394 0.039364797 1137 Q15424;F5H1L1;F5H0H3;B7Z959 SAFB Scaffold attachment factor B1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 109.88 101.02 3 6.4402E-06 5 73708 20150910_Q1_SA_NiHu_Masterprac_group13_C 63.46 48.019 25526000 4923000 5244500 2594500 2717900 4797500 5248300 430 1137 426 1976;1977;1978;1979;1980;1981 1337;1338;1339;1340;1341 1338 5 AIEELLKEAK Unmodified 1142.6547 0.65468953 1637 Q9Y2S0-2 POLR1D DNA-directed RNA polymerases I and III subunit RPAC2 yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 123.07 113.61 2 0 4 80963 20150910_Q1_SA_NiHu_Masterprac_group13_C 203.02 119.24 97490000 8024200 11704000 19882000 2333600 1547400 53999000 431 1637 427 1982;1983;1984;1985;1986;1987 1342;1343;1344;1345 1342 4 AIEEQMVAAK Unmodified 1088.5536 0.55359527 1477 Q9H0A0;E7ESU4;E9PMN9 NAT10 N-acetyltransferase 10 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 85.636 76.946 2 0.0049765 4 58103 20150910_Q1_SA_NiHu_Masterprac_group15_C 87.258 26.348 4851000 1169000 0 0 0 1651600 2030400 432 1477 428 1988;1989;1990 1346;1347;1348;1349 1348 4 AIEIVESDVK Unmodified 1101.5918 0.59175492 1431 Q99741 CDC6 Cell division control protein 6 homolog yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 109.69 102.1 2 0.0026885 3 67688 20150910_Q1_SA_NiHu_Masterprac_group10_B 99.568 73.947 8999900 0 1686500 1849200 0 0 5464300 433 1431 429 1991;1992;1993 1350;1351;1352 1352 3 AIENCEYAFNLKK Unmodified 1598.7763 0.776278 1148 Q15796-2;Q15796 SMAD2 Mothers against decapentaplegic homolog 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 122.32 112.2 3 0.00059769 1 76488 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.597 60.456 4524000 1284000 0 0 0 0 3240000 434 1148 430 1994;1995 1353 1353 1 AIENSARDAAVQK Unmodified 1371.7106 0.71064128 1609 Q9ULM3 YEATS2 YEATS domain-containing protein 2 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 45.987 45.51 3 0.023652 1 32624 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.985 3.5808 1677600 0 0 0 417250 0 1260300 435 1609 431 1996;1997 1354 1354 1 AIETTDIISR Unmodified 1117.5979 0.59790293 1392 Q96HS1-2;Q96HS1;F5GXG4 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 105.57 102.31 2 0.025061 1 69791 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.418 30.462 1108000 0 0 0 0 0 1108000 436 1392 432 1998 1355 1355 1 AIGGGLSSVGGGSSTIK Unmodified 1446.7678 0.7678218 287 P02538;CON__P02538;E7EUE8 KRT6A Keratin, type II cytoskeletal 6A no no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 109.63 104.78 2 0.0017201 5 69085 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.936 31.955 34028000 0 6381600 5365400 22281000 0 0 + 437 287 433 1999;2000;2001;2002 1356;1357;1358;1359;1360 1360 5 AIGGGLSSVGGGSSTIKYTTTSSSSRK Unmodified 2545.2984 0.29837345 287 P02538;CON__P02538;E7EUE8 KRT6A Keratin, type II cytoskeletal 6A no no 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 109.75 102.82 4 0.0032889 2 67838 20150910_Q1_SA_NiHu_Masterprac_group13_B 36.627 25.283 7654200 0 0 0 4380900 1110500 2162800 + 438 287 434 2003;2004;2005 1361;1362 1361 2 AIGGSKPRVATPEVVSK Unmodified 1694.9679 0.9679186 877;878 P26367;G3V3Q9;P26367-2 PAX6 Paired box protein Pax-6 no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 79.062 77.029 4 0.0036723 2 53330 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.899 31.758 2450100 0 671050 0 0 0 1779100 439 877;878 435 2006;2007 1363;1364 1364 2 AIGISEPVKVPYSK Unmodified 1486.8395 0.83953018 427 Q9UHL9-2;Q9UHL9;E9PFE2;Q9UHL9-3 GTF2IRD1 General transcription factor II-I repeat domain-containing protein 1 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 130.97 125.66 3 1.4186E-20 4 83396 20150910_Q1_SA_NiHu_Masterprac_group13_B 112.02 93.057 43301000 8404100 6153500 0 4913200 0 23830000 440 427 436 2008;2009;2010;2011 1365;1366;1367;1368 1365 4 AIGVLTSGGDAQGMNAAVR Unmodified 1786.8996 0.89958103 1031 Q01813;P17858 PFKP;PFKL 6-phosphofructokinase type C;6-phosphofructokinase, liver type yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 131.53 128.75 2 0.00013191 2 86823 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.121 56.176 14188000 0 4261100 0 0 0 9926800 441 1031 437 2012;2013 1369;1370 1369 2 AIHERGEAVCPTCNVVTRK Unmodified 2196.0892 0.089189493 1402 Q96KM6 ZNF512B Zinc finger protein 512B yes yes 0 0 2 By MS/MS By MS/MS By matching By MS/MS By matching By matching 3 3 1 2 2 2 70.711 64.309 4;5 0.00053305 5 45676 20150910_Q1_SA_NiHu_Masterprac_group10_C 64.331 52.675 60415000 9817100 11144000 5722300 6653900 10405000 16673000 442 1402 438 2014;2015;2016;2017;2018;2019;2020;2021;2022;2023;2024;2025;2026 1371;1372;1373;1374;1375 1375 5 AIIRENEFSFEDNAIRGGK Unmodified 2165.0865 0.086530182 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 131.65 131.05 3 6.0973E-08 1 84489 20150910_Q1_SA_NiHu_Masterprac_group10_B 86.179 67.24 0 0 0 0 0 0 0 443 486 439 2027 1376 1376 1 AIKEMGFTNMTEIQHK Unmodified 1876.9175 0.91753928 1550 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 130.5 112.63 4 0.0090551 1 79514 20150910_Q1_SA_NiHu_Masterprac_group15_C 46.121 21.203 9773900 0 0 2795700 0 6978200 0 444 1550 440 2028;2029 1377 1377 1 AIMEMPSFYSHGLPR Oxidation (M) 1750.8171 0.81709696 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 1 0 By matching By matching By matching By matching By matching By MS/MS 1 132.56 127.6 3 0.017723 1 87581 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.094 39.519 7836700 0 0 0 0 0 7836700 445 352;968 441 2030 1378 1378 35 1 AIMYEETTYSK Unmodified 1334.6064 0.60641871 959 P52701;B4DF41;F5H2F9;F5H769;P52701-2 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 102.28 92.459 2 0.0023817 1 63200 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.713 58.18 7640300 0 0 1142000 0 0 6498300 446 959 442 2031;2032 1379 1379 1 AINGPTSASGDDISK Unmodified 1431.6842 0.68415175 140 P51114-3;B4DXZ6;P51114;H7C4S4 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 69.302 67.22 2 0.00049384 1 46697 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.26 55.79 1299500 0 174060 0 0 0 1125500 447 140 443 2033;2034 1380 1380 0 AINQQTGAFVEISR Unmodified 1532.7947 0.79470526 1366 Q92945-2;Q92945 KHSRP Far upstream element-binding protein 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 7 2 5 3 3 129.58 123.23 2;3 1.241E-260 19 84920 20150910_Q1_SA_NiHu_Masterprac_group15_B 180.3 145.55 1755100000 572690000 138160000 250030000 38824000 69495000 685880000 448 1366 444 2035;2036;2037;2038;2039;2040;2041;2042;2043;2044;2045;2046;2047;2048;2049;2050;2051;2052;2053;2054;2055;2056 1381;1382;1383;1384;1385;1386;1387;1388;1389;1390;1391;1392;1393;1394;1395;1396;1397;1398;1399 1386 17 AINQQTGAFVEISRQLPPNGDPNFK Unmodified 2740.3933 0.39327689 1366 Q92945-2;Q92945 KHSRP Far upstream element-binding protein 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 2 134.83 125.11 3 2.4459E-162 7 79511 20150910_Q1_SA_NiHu_Masterprac_group10_C 137.87 121.15 1518500000 373980000 276310000 483130000 208970000 41852000 134310000 449 1366 445 2057;2058;2059;2060;2061;2062;2063;2064 1400;1401;1402;1403;1404;1405;1406 1405 7 AINTLNGLR Unmodified 970.55598 0.55597854 1146 Q15717;B1AM48;Q12926-2;Q12926;P26378-4;P26378-2;P26378-5;B1APY9;P26378;P26378-3;B1APY8 ELAVL1;ELAVL2;ELAVL4 ELAV-like protein 1;ELAV-like protein 2;ELAV-like protein 4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 104.21 94.766 2 0.0089047 1 63646 20150910_Q1_SA_NiHu_Masterprac_group10_B 86.67 29.623 5726400 197750 2106900 1076300 762260 1583200 0 450 1146 446 2065;2066;2067;2068;2069 1407 1407 1 AINTLNGLRLQSK Unmodified 1426.8256 0.82561145 1146 Q15717 ELAVL1 ELAV-like protein 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 123.87 113.75 2;3 0 14 80936 20150910_Q1_SA_NiHu_Masterprac_group13_C 211.83 174.22 134260000 33456000 18876000 28770000 9886100 7079000 36189000 451 1146 447 2070;2071;2072;2073;2074;2075;2076;2077;2078;2079;2080;2081;2082 1408;1409;1410;1411;1412;1413;1414;1415;1416;1417;1418;1419;1420;1421 1412 14 AIPRPDGIEWR Unmodified 1308.6939 0.693869 320 D6RAF2;Q6PIY7-2;Q6PIY7 PAPD4 Poly(A) RNA polymerase GLD2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.62 125.66 3 0.0059731 2 85412 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.942 38.527 3328400 0 0 0 0 0 3328400 452 320 448 2083 1422;1423 1423 2 AIPTTGRGSSGVGLTAAVTTDQETGER Unmodified 2631.31 0.31000077 873 P25205 MCM3 DNA replication licensing factor MCM3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 127.09 115.66 3 0.00077198 3 76406 20150910_Q1_SA_NiHu_Masterprac_group10_C 43.732 31.264 8603800 3561700 979860 4062200 0 0 0 453 873 449 2084;2085;2086 1424;1425;1426 1426 3 AIQAVATNPK Unmodified 1011.5713 0.57129425 1216 Q68CQ4 DIEXF Digestive organ expansion factor homolog yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 55.506 52.648 2 0.0093219 3 39086 20150910_Q1_SA_NiHu_Masterprac_group10_C 76.228 35.876 3897200 859730 745850 0 791270 0 1500300 454 1216 450 2087;2088;2089;2090 1427;1428;1429 1429 3 AIQERLFK Unmodified 1003.5815 0.581465 1533 Q9NQW6;Q9NQW6-2;H7C3S1 ANLN Actin-binding protein anillin yes no 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 94.001 85.153 2 0.0099875 3 64753 20150910_Q1_SA_NiHu_Masterprac_group13_C 109.48 29.249 7396600 0 0 3055300 1379600 1243200 1718500 455 1533 451 2091;2092;2093;2094 1430;1431;1432 1431 3 AIQINPAFADAHSNLASIHK Unmodified 2117.1018 0.10178632 705 O15294;O15294-2;O15294-3;O15294-4 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 2 131.86 131.26 3;4 8.2504E-05 2 84699 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.334 54.023 21579000 0 21579000 0 0 0 0 456 705 452 2095;2096 1433;1434 1434 2 AIQPQAAQGPAAVQQK Unmodified 1604.8635 0.86345352 1405 Q96L91-4;Q96L91-3;Q96L91-5;Q96L91-2;Q96L91 EP400 E1A-binding protein p400 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 81.367 73.822 2 0.0037916 4 56319 20150910_Q1_SA_NiHu_Masterprac_group15_C 52.527 34.114 12210000 1115200 1699300 1611500 1639500 3432200 2712700 457 1405 453 2097;2098;2099;2100;2101;2102 1435;1436;1437;1438 1436 4 AIQRKPNPLANSNTSGYSESK Unmodified 2261.14 0.14002232 1122 Q14CA3;Q14669;Q14CF1 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 74.225 66.945 4 6.619E-06 2 46580 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.644 44.009 8644500 0 2456200 931070 830010 2200300 2226900 458 1122 454 2103;2104;2105;2106;2107 1439;1440 1440 2 AIRAAQVERYVPEHER Unmodified 1923.0075 0.0074919995 1263 Q86UT8;E9PJ16;E9PPT8 CCDC84 Coiled-coil domain-containing protein 84 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 97.247 91.206 4 0.0040621 2 61436 20150910_Q1_SA_NiHu_Masterprac_group10_B 51.03 30.938 2127100 1217900 909200 0 0 0 0 459 1263 455 2108;2109 1441;1442 1441 2 AIRLELQGPRGSPNAR Unmodified 1733.9649 0.9648989 397 E7EX81;P19338;H7BY16;Q9BQ02 NCL Nucleolin yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 105.14 98.338 4 0.034675 1 70920 20150910_Q1_SA_NiHu_Masterprac_group15_C 36.993 19.207 5885200 0 0 0 1008700 2323400 2553200 460 397 456 2110;2111;2112 1443 1443 1 AIRPQIDLK Unmodified 1052.6342 0.63422886 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 99.759 92.038 2 0.0268 1 62982 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.46 57.035 13572000 0 1209400 710450 886050 3827600 6938700 461 1012 457 2113;2114;2115;2116;2117 1444 1444 1 AITFFTEDDKPLLR Unmodified 1664.8774 0.87737225 1635 Q9Y2R4;A8MTP9 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 133.52 115.68 3 0.0012599 1 82598 20150910_Q1_SA_NiHu_Masterprac_group15_C 79.089 50.728 186090000 0 0 0 0 186090000 0 462 1635 458 2118 1445 1445 1 AITGRIPESLRNCVNK Unmodified 1826.9785 0.97850006 973 P56545;Q5SQP8;P56545-2 CTBP2 C-terminal-binding protein 2 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 111.41 102.38 3 0.014197 1 69976 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.009 51.009 11114000 1316300 2770600 3048700 0 0 3977900 463 973 459 2119;2120;2121;2122 1446 1446 1 AITHLNNNFMFGQK Unmodified 1633.8035 0.8034958 838 P14866;A6NIT8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 132.25 121.34 2;3 2.4502E-200 10 84504 20150910_Q1_SA_NiHu_Masterprac_group10_B 172.58 148.49 504680000 105120000 121250000 63789000 31615000 61241000 121660000 464 838 460 2123;2124;2125;2126;2127;2128;2129;2130;2131;2132 1447;1448;1449;1450;1451;1452;1453;1454;1455;1456 1454 10 AITHLNNNFMFGQK Oxidation (M) 1649.7984 0.79841043 838 P14866;A6NIT8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 1 0 By matching By matching By matching By matching By MS/MS By matching 1 1 130.45 112.58 3 0.0014715 1 79470 20150910_Q1_SA_NiHu_Masterprac_group15_C 88.092 67.084 10949000 0 0 3356000 0 7592600 0 465 838 460 2133;2134 1457 1457 84 1 AITIAGVPQSVTECVK Unmodified 1671.8866 0.88655673 1135 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 133.4 132.8 2 1.1813E-26 1 86472 20150910_Q1_SA_NiHu_Masterprac_group10_B 108.66 85.478 49446000 0 49446000 0 0 0 0 466 1135 461 2135 1458 1458 1 AITIAGVPQSVTECVKQICLVMLETLSQSPQGR Unmodified 3612.8678 0.86775891 1135 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 134.17 133.56 3 8.856E-12 1 87399 20150910_Q1_SA_NiHu_Masterprac_group10_B 53.665 42.807 181170000 0 181170000 0 0 0 0 467 1135 462 2136 1459 1459 1 AIVAESLNNTSIK Unmodified 1358.7405 0.74054442 896 P35251-2;P35251;H0Y8U4 RFC1 Replication factor C subunit 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 113.35 110.52 2 0.0022322 1 75559 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.952 47.637 3350700 0 706720 0 0 0 2643900 468 896 463 2137;2138 1460 1460 1 AIVFSGCGR Unmodified 965.47529 0.47528537 1450 Q9BUL9 RPP25 Ribonuclease P protein subunit p25 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 86.077 84.095 2 0.022914 1 57338 20150910_Q1_SA_NiHu_Masterprac_group10_B 68.224 9.3063 2579600 0 936430 0 0 0 1643200 469 1450 464 2139;2140 1461 1461 1 AIVIDPKNPLCK Unmodified 1366.7643 0.76425675 95 B4DL80;G5EA36;P30260;G3V1C4;I3L394 CDC27 Cell division cycle protein 27 homolog yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 129.58 127.73 3 3.0936E-13 3 85567 20150910_Q1_SA_NiHu_Masterprac_group15_B 112.85 79.806 13326000 0 5749000 0 766320 0 6811000 470 95 465 2141;2142;2143 1462;1463;1464 1463 3 AIVSGGGGTIVAQPVQTLTK Unmodified 1896.068 0.068026571 1609 Q9ULM3 YEATS2 YEATS domain-containing protein 2 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 132.91 132.61 2 1.2433E-26 2 86025 20150910_Q1_SA_NiHu_Masterprac_group13_B 101.17 77.807 20390000 0 15244000 0 5145600 0 0 471 1609 466 2144;2145 1465;1466 1465 2 AKEEEGVPDEEGWVK Unmodified 1700.7893 0.78934511 1643 Q9Y3A4;Q9NSQ0 RRP7A;RRP7B Ribosomal RNA-processing protein 7 homolog A;Putative ribosomal RNA-processing protein 7 homolog B yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 110.12 101.67 2;3 0.00059568 8 69267 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.415 73.415 79424000 8726700 13766000 12138000 9167000 4739500 30887000 472 1643 467 2146;2147;2148;2149;2150;2151;2152;2153;2154;2155;2156;2157;2158 1467;1468;1469;1470;1471;1472;1473;1474 1470 8 AKEEEGVPDEEGWVKVTR Unmodified 2057.0065 0.006548526 1643 Q9Y3A4;Q9NSQ0 RRP7A;RRP7B Ribosomal RNA-processing protein 7 homolog A;Putative ribosomal RNA-processing protein 7 homolog B yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1 2 121.85 113.28 3;4 0.00018202 7 75365 20150910_Q1_SA_NiHu_Masterprac_group10_C 86.213 73.414 27147000 6283700 5684200 5419700 2715400 1005400 6038600 473 1643 468 2159;2160;2161;2162;2163;2164;2165;2166;2167 1475;1476;1477;1478;1479;1480;1481 1481 6 AKEELAELKQLAAR Unmodified 1568.8886 0.88860564 1678 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 130.27 114.58 3 0.0038352 1 75854 20150910_Q1_SA_NiHu_Masterprac_group10_C 78.985 39.024 52021000 52021000 0 0 0 0 0 + 474 1678 469 2168 1482 1482 1 AKGVWSTLPVNEK Unmodified 1427.7773 0.77726428 1407 Q96MU7-2;Q96MU7 YTHDC1 YTH domain-containing protein 1 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 130.97 114.13 3 4.2342E-09 2 81687 20150910_Q1_SA_NiHu_Masterprac_group13_C 102.73 35.517 9406000 5175500 0 4230600 0 0 0 475 1407 470 2169;2170 1483;1484 1483 2 AKLVILANNCPALR Unmodified 1551.8919 0.89191688 342 E5RI99;P62888;E5RJH3 RPL30 60S ribosomal protein L30 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 2 1 132.34 121.88 2;3 3.491E-124 3 78409 20150910_Q1_SA_NiHu_Masterprac_group10_C 152.4 133.99 136440000 112210000 0 0 24233000 0 0 476 342 471 2171;2172;2173 1485;1486;1487 1486 3 AKLVILANNCPALRK Unmodified 1679.9869 0.9868799 342 E5RI99;P62888 RPL30 60S ribosomal protein L30 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 3 2 2 7 2 124.43 112.06 2;3;4 0 24 73550 20150910_Q1_SA_NiHu_Masterprac_group10_C 199.8 199.8 2275600000 1030400000 124150000 253020000 644950000 62161000 160940000 477 342 472 2174;2175;2176;2177;2178;2179;2180;2181;2182;2183;2184;2185;2186;2187;2188;2189;2190;2191;2192;2193;2194;2195;2196 1488;1489;1490;1491;1492;1493;1494;1495;1496;1497;1498;1499;1500;1501;1502;1503;1504;1505;1506;1507;1508;1509;1510;1511 1509 24 AKPVGSPLFKFSDK Unmodified 1519.8399 0.83986454 1353 Q92576-2;Q92576;E7EVH3;E9PE34;B3KP41;D6R9X2 PHF3 PHD finger protein 3 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 121.84 114.76 3 0.017238 2 75168 20150910_Q1_SA_NiHu_Masterprac_group10_C 55.815 31.744 5677900 3069200 1550200 0 0 0 1058500 478 1353 473 2197;2198;2199 1512;1513 1513 1 AKQDPSYYLK Unmodified 1211.6186 0.61863837 1079 Q13356;Q13356-2;E7EW80 PPIL2 Peptidyl-prolyl cis-trans isomerase-like 2 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 2 2 2 81.02 74.068 2;3 0.0081352 3 51300 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.469 63.825 15891000 834490 1942200 1264800 1061000 4019500 6769200 479 1079 474 2200;2201;2202;2203;2204;2205;2206;2207;2208 1514;1515;1516 1514 3 ALAAADRLQK Unmodified 1055.6087 0.60874239 404 E9PB95;O95352-2;O95352 ATG7 Ubiquitin-like modifier-activating enzyme ATG7 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 61.844 54.224 2 0.0080997 1 38653 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.658 36.306 933220 0 0 509760 0 0 423460 480 404 475 2209;2210 1517 1517 1 ALAAAGYDVEK Unmodified 1106.5608 0.56078914 818;843 P16403;Q02539;P22492;P10412;P16402 HIST1H1C;HIST1H1A;HIST1H1T;HIST1H1E;HIST1H1D Histone H1.2;Histone H1.1;Histone H1t;Histone H1.4;Histone H1.3 no no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 92.784 84.955 2 0.0035513 3 58316 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.92 37.542 64528000 5421400 6114100 2519400 3864300 27803000 18806000 481 843;818 476 2211;2212;2213;2214;2215;2216 1518;1519;1520 1519 3 ALAAAGYDVEKNNSR Unmodified 1577.7798 0.77978347 818;843 P16403;Q02539;P22492;P10412;P16402 HIST1H1C;HIST1H1A;HIST1H1T;HIST1H1E;HIST1H1D Histone H1.2;Histone H1.1;Histone H1t;Histone H1.4;Histone H1.3 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 3 2 80.79 72.589 2;3 4.3482E-147 13 51411 20150910_Q1_SA_NiHu_Masterprac_group10_C 155.39 97.951 171700000 72321000 11459000 8876000 9568400 46216000 23265000 482 843;818 477 2217;2218;2219;2220;2221;2222;2223;2224;2225;2226;2227;2228;2229;2230;2231 1521;1522;1523;1524;1525;1526;1527;1528;1529;1530;1531;1532;1533 1533 13 ALAAAGYDVEKNNSRIK Unmodified 1818.9588 0.95881047 818;843 P16403;Q02539;P22492;P10412;P16402 HIST1H1C;HIST1H1A;HIST1H1T;HIST1H1E;HIST1H1D Histone H1.2;Histone H1.1;Histone H1t;Histone H1.4;Histone H1.3 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 89.317 81.605 3;4 3.8356E-73 11 55639 20150910_Q1_SA_NiHu_Masterprac_group13_B 129.29 109.53 114060000 42981000 9712800 11310000 12226000 30836000 6989800 483 843;818 478 2232;2233;2234;2235;2236;2237;2238;2239;2240;2241;2242;2243 1534;1535;1536;1537;1538;1539;1540;1541;1542;1543;1544 1534 11 ALAAGGYDVEK Unmodified 1092.5451 0.54513908 842 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 1 1 1 1 86.956 79.812 2 0.0073069 4 55582 20150910_Q1_SA_NiHu_Masterprac_group10_C 68.786 39.235 21684000 4083800 4183100 1373100 1242300 4121600 6679800 484 842 479 2244;2245;2246;2247;2248;2249;2250;2251 1545;1546;1547;1548 1548 3 ALAAGGYDVEKNNSR Unmodified 1563.7641 0.76413341 842 P16401 HIST1H1B Histone H1.5 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 2 2 74.226 66.888 2;3 0.00046296 8 47300 20150910_Q1_SA_NiHu_Masterprac_group10_C 71.513 50.929 32527000 8895200 5950800 2693400 1770600 6240200 6976800 485 842 480 2252;2253;2254;2255;2256;2257;2258;2259;2260;2261;2262 1549;1550;1551;1552;1553;1554;1555;1556 1555 8 ALAAGGYDVEKNNSRIK Unmodified 1804.9432 0.94316041 842 P16401 HIST1H1B Histone H1.5 yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 79.465 76.331 3 0.0053094 2 52490 20150910_Q1_SA_NiHu_Masterprac_group13_B 58.079 47.311 12274000 5297900 2959800 0 2401100 0 1614800 486 842 481 2263;2264;2265;2266 1557;1558 1557 2 ALAAPAAEEK Unmodified 969.51311 0.51311067 1028 Q01650 SLC7A5 Large neutral amino acids transporter small subunit 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 58.373 52.119 2 0.010473 1 37353 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.233 9.8144 1687600 397170 348350 578690 0 0 363410 487 1028 482 2267;2268;2269;2270 1559 1559 1 ALAAVPSAGSVQRVPSGAAGGK Unmodified 1950.0647 0.064672527 1098 Q14160-2;Q14160;Q14160-3;H0YCG0;E7EMI2 SCRIB Protein scribble homolog yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 112.12 104.47 3 0.014378 1 71583 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.4 23.424 4863000 0 1393500 1083900 0 0 2385600 488 1098 483 2271;2272;2273 1560 1560 1 ALAEAQAQLQESSQK Unmodified 1600.8057 0.80566387 1226 Q6P5Z2 PKN3 Serine/threonine-protein kinase N3 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 91.919 82.87 2 0.00060771 2 56773 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.327 64.753 1389000 0 0 0 0 209340 1179700 489 1226 484 2274;2275 1561;1562 1561 2 ALALNCDAPLDDK Unmodified 1414.6762 0.67622961 1411 Q96PU4 UHRF2 E3 ubiquitin-protein ligase UHRF2 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 122.75 120.93 2 4.153E-09 4 77805 20150910_Q1_SA_NiHu_Masterprac_group10_B 102.73 84.528 5394000 0 1701600 0 682370 0 3010000 490 1411 485 2276;2277;2278 1563;1564;1565;1566 1566 4 ALALQLQNQR Unmodified 1153.6568 0.65675521 1573 Q9P0U3;Q9P0U3-2 SENP1 Sentrin-specific protease 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 2 1 113.65 104.71 2 0.0093243 2 74475 20150910_Q1_SA_NiHu_Masterprac_group15_C 76.221 55.189 8116800 684900 958970 0 471650 2594700 3406600 491 1573 486 2279;2280;2281;2282;2283;2284 1567;1568 1568 2 ALAQALKEGR Unmodified 1055.6087 0.60874239 973 P56545;Q5SQP8;P56545-2;H0Y9M9;H0Y8U5;H0Y8W7;Q13363-2;Q13363 CTBP2;CTBP1 C-terminal-binding protein 2;C-terminal-binding protein 1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 65.458 59.007 2 0.028175 1 47951 20150910_Q1_SA_NiHu_Masterprac_group13_C 72.2 14.669 2669300 0 767630 638960 0 0 1262700 492 973 487 2285;2286;2287 1569 1569 1 ALAQEDQGAGEVER Unmodified 1471.6903 0.69029976 702 O15020-2;O15020 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 64.723 62.641 2 0.0011065 3 43761 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.475 60.232 827500 0 357170 0 0 0 470330 493 702 488 2288;2289 1570;1571;1572 1570 3 ALATHPGISFYEEPR Unmodified 1686.8366 0.83657007 1059 Q12789-3;Q12789;H7BYG6 GTF3C1 General transcription factor 3C polypeptide 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.18 126.22 3 1.5631E-08 1 86010 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.45 77.401 11217000 0 0 0 0 0 11217000 494 1059 489 2290 1573 1573 1 ALAVVYGPHEIR Unmodified 1323.7299 0.72992016 1526 Q9NPD3;E9PPI9 EXOSC4 Exosome complex component RRP41 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 120.34 110.54 3 0.023896 1 79708 20150910_Q1_SA_NiHu_Masterprac_group13_C 48.115 34.306 1992900 0 615390 1377500 0 0 0 495 1526 490 2291;2292 1574 1574 1 ALAVVYGPHEIRGSR Unmodified 1623.8845 0.88452332 1526 Q9NPD3;E9PPI9 EXOSC4 Exosome complex component RRP41 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 1 1 1 3 2 105.92 95.876 3;4 0.0024201 7 65703 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.393 48.297 59865000 5297700 2763000 5321200 3184100 11129000 32170000 496 1526 491 2293;2294;2295;2296;2297;2298;2299;2300;2301;2302;2303 1575;1576;1577;1578;1579;1580;1581 1577 7 ALCATRQEPLLIGSTK Unmodified 1756.9506 0.95055397 934 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 120.8 118.06 3 0.01723 1 80363 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.495 23.03 2051600 0 351510 0 0 0 1700100 497 934 492 2304;2305 1582 1582 1 ALCHALTFPSLQR Unmodified 1512.7871 0.78711746 255 C9JJU9;Q96P11-2;G3V0G9;Q96P11;Q96P11-4;Q63ZY6;Q63ZY6-5;Q63ZY6-4;Q3KNT7-3;Q3KNT7-2;Q3KNT7 NSUN5;NSUN5P2;NSUN5P1 Putative methyltransferase NSUN5;Putative methyltransferase NSUN5C;Putative NOL1/NOP2/Sun domain family member 5B yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 133.02 123.79 3 3.075E-05 2 85887 20150910_Q1_SA_NiHu_Masterprac_group10_B 95.273 29.251 16189000 0 12828000 0 0 3361100 0 498 255 493 2306;2307 1583;1584 1584 2 ALDCSSSIRQPSLHMSAAAASR Unmodified 2315.111 0.11104715 754 O94776;Q68DB1 MTA2;DKFZp686F2281 Metastasis-associated protein MTA2 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 114.55 106.83 3 3.1177E-74 2 73260 20150910_Q1_SA_NiHu_Masterprac_group15_B 119.5 104.34 45090000 0 5717700 9778700 0 0 29594000 499 754 494 2308;2309;2310 1585;1586 1586 2 ALDCSSSVRQPSLHMSAAAASR Unmodified 2301.0954 0.095397083 1078;331 Q13330;Q13330-3;E7ESY4;E7EN71;H0Y4T7;Q13330-2;F8VSM3;E7EQY4;Q9BTC8-2;D6W5A2;F8W8M8;E7EV10;Q9BTC8;E9PCS8 MTA1;MTA3 Metastasis-associated protein MTA1;Metastasis-associated protein MTA3 no no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 2 103.83 98.444 3;4 2.0137E-06 6 67113 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.573 65.946 16152000 0 3201500 1397000 0 0 11553000 500 1078;331 495 2311;2312;2313;2314;2315 1587;1588;1589;1590;1591;1592 1588 6 ALDILQQHASHYK Unmodified 1522.7892 0.78922595 701 O15014 ZNF609 Zinc finger protein 609 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 100.88 95.385 3 0.0018594 1 65150 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.54 70.54 6606700 0 1648000 395870 1166200 0 3396600 501 701 496 2316;2317;2318;2319 1593 1593 1 ALDMLDAEK Unmodified 1004.4848 0.48484701 227 C9J4N8;Q9HAV4;E7EQN7;E7EQK9 XPO5 Exportin-5 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 114.88 105.75 2 0.020412 2 69987 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.056 28.608 12605000 946020 1750500 1857900 1312300 1517400 5221200 502 227 497 2320;2321;2322;2323;2324;2325 1594;1595 1595 2 ALDQSDNDMSAVYR Unmodified 1583.6886 0.68858521 1168;1169 Q49A26-2;Q49A26;Q49A26-3;Q49A26-4;Q49A26-5 GLYR1 Putative oxidoreductase GLYR1 no no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 108.94 100.97 2 0.0011063 5 66678 20150910_Q1_SA_NiHu_Masterprac_group13_B 74.966 63.383 33899000 0 4965800 5814200 4140200 7344800 11633000 503 1168;1169 498 2326;2327;2328;2329;2330 1596;1597;1598;1599;1600 1596 5 ALDVMVSTFHK Unmodified 1246.638 0.63799361 881 P26447 S100A4 Protein S100-A4 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 130.76 124.93 3 0.00080577 4 82648 20150910_Q1_SA_NiHu_Masterprac_group10_B 93.561 63.635 14686000 0 6265000 0 1907400 1846000 4667800 504 881 499 2331;2332;2333;2334 1601;1602;1603;1604 1604 4 ALEAVFGK Unmodified 833.4647 0.46470391 649 H3BT71;P38159-2;P38159;H0Y6E7;H3BNC1;H3BR27;P38159-3 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 117.6 106.62 2 0.0085181 4 70518 20150910_Q1_SA_NiHu_Masterprac_group10_B 93.374 12.077 14342000 1045400 1564900 992790 0 7012600 3726300 505 649 500 2335;2336;2337;2338;2339 1605;1606;1607;1608 1607 4 ALEDLAGFK Unmodified 962.5073 0.50729701 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 132.73 114.86 2 0.0070209 1 83979 20150910_Q1_SA_NiHu_Masterprac_group13_C 96.668 40.992 11095000 0 0 9700400 0 1394300 0 506 919;920 501 2340;2341 1609 1609 1 ALEDVVQR Unmodified 928.49779 0.49779495 1118 Q14966-3;Q14966;Q14966-4;Q14966-2;C9JBI6;F5H330 ZNF638 Zinc finger protein 638 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 87.457 78.207 2 0.014854 1 53900 20150910_Q1_SA_NiHu_Masterprac_group10_B 87.181 3.4286 4689100 0 805750 988380 0 1217800 1677200 507 1118 502 2342;2343;2344;2345 1610 1610 1 ALEELNQQLEK Unmodified 1313.6827 0.68269519 1391 Q96HJ3-2;Q96HJ3 CCDC34 Coiled-coil domain-containing protein 34 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 108.16 105.63 2 0.00030636 2 72227 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.105 82.184 1351500 0 629310 0 0 0 722240 508 1391 503 2346;2347 1611;1612 1612 2 ALEESNYELEGK Unmodified 1380.6409 0.64088996 298 P13645;CON__P13645;CON__P02535-1 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 101.67 90.295 2 3.0473E-07 5 61272 20150910_Q1_SA_NiHu_Masterprac_group13_B 102.97 78.275 9698000 0 0 4643600 2567300 2487100 0 + 509 298 504 2348;2349;2350;2351 1613;1614;1615;1616;1617 1613 4 ALEESNYELEGKIK Unmodified 1621.8199 0.81991695 298 P13645;CON__P13645;CON__P02535-1 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 109.4 103.63 3 3.2761E-05 4 68381 20150910_Q1_SA_NiHu_Masterprac_group10_B 93.348 71.021 10487000 0 6749000 1485600 287960 0 1964200 + 510 298 505 2352;2353;2354;2355 1618;1619;1620;1621 1620 4 ALEFVTNPDIAAKK Unmodified 1515.8297 0.82969378 750 O75691 UTP20 Small subunit processome component 20 homolog yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 131 125.69 3 2.9786E-08 4 86070 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.902 70.518 21570000 7559700 7914300 0 1807600 0 4288400 511 750 506 2356;2357;2358;2359 1622;1623;1624;1625 1623 4 ALEGYADRGNFPAHPVNEEK Unmodified 2213.0501 0.050144675 388 E7EVA0;P27816-4;E9PGM5;B5MEG9 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 112.84 99.755 3 0.023431 1 66939 20150910_Q1_SA_NiHu_Masterprac_group10_C 35.852 10.97 1282100 1282100 0 0 0 0 0 512 388 507 2360 1626 1626 1 ALEHSALAINHK Unmodified 1302.7044 0.70443369 852 P17812;B4DR64;Q9NRF8 CTPS1;CTPS2 CTP synthase 1;CTP synthase 2 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 66.343 59.384 3 0.00012288 4 41765 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.452 75.78 11600000 0 1631000 907270 569280 2121900 6370200 513 852 508 2361;2362;2363;2364;2365 1627;1628;1629;1630 1629 4 ALELFVK Unmodified 818.49019 0.49019038 1576 Q9P275;Q9P275-2;F5H3B9 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 133.27 132.66 2 0.011502 1 86218 20150910_Q1_SA_NiHu_Masterprac_group10_B 91.906 28.928 12995000 0 12995000 0 0 0 0 514 1576 509 2366 1631 1631 1 ALENLEKNK Unmodified 1057.5768 0.57677356 1673 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 79.441 78.086 2 0.039734 1 53755 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.064 10.222 2435500 0 0 0 0 0 2435500 + 515 1673 510 2367 1632 1632 1 ALERDPTEDDVESK Unmodified 1602.7373 0.73730954 170 Q86YP4;B5MC40;Q86YP4-2;C9JHD7;C9JJK9;C9JVY3;C9JMI3;C9JGN4 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 66.267 58.095 3 0.0041187 1 41066 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.32 30.991 6895100 0 0 2589400 0 0 4305700 516 170 511 2368;2369 1633 1633 1 ALETDSVSGVSK Unmodified 1191.5983 0.59829686 1126 Q15022 SUZ12 Polycomb protein SUZ12 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 1 1 1 1 1 76.222 68.645 2 0.0035654 5 49633 20150910_Q1_SA_NiHu_Masterprac_group10_C 69.229 43.932 19745000 4920500 3170400 2802900 3449900 265880 5135300 517 1126 512 2370;2371;2372;2373;2374;2375;2376 1634;1635;1636;1637;1638 1638 5 ALETDSVSGVSKQSK Unmodified 1534.7839 0.7838658 1126 Q15022 SUZ12 Polycomb protein SUZ12 yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 2 1 1 1 66.16 59.293 2;3 7.1126E-06 3 43328 20150910_Q1_SA_NiHu_Masterprac_group10_C 69.045 69.045 7240700 2191000 916080 2172100 1961500 0 0 518 1126 513 2377;2378;2379;2380;2381 1639;1640;1641 1641 2 ALETIGANLQK Unmodified 1156.6452 0.64518747 528 Q8N122-2;F5H7J5;Q8N122 RPTOR Regulatory-associated protein of mTOR yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 110.45 103.3 2 0.0073069 1 70537 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.786 20.502 3209500 0 0 1127700 421840 0 1660000 519 528 514 2382;2383;2384 1642 1642 1 ALETVFGK Unmodified 863.47527 0.4752686 1379 Q96E39 RBMXL1 RNA binding motif protein, X-linked-like-1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 1 115.79 104.64 2 0.0055147 6 69120 20150910_Q1_SA_NiHu_Masterprac_group13_B 107.9 28.183 42254000 2026700 4586500 5817600 6257800 11911000 11655000 520 1379 515 2385;2386;2387;2388;2389;2390;2391;2392 1643;1644;1645;1646;1647;1648 1643 6 ALEVSEDVK Unmodified 988.50769 0.50769094 1614 Q9UNF1 MAGED2 Melanoma-associated antigen D2 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 78.425 75.515 2 0.016022 1 52241 20150910_Q1_SA_NiHu_Masterprac_group10_B 74.376 6.3601 1047900 0 1047900 0 0 0 0 521 1614 516 2393 1649 1649 1 ALEYTIYNQELNETR Unmodified 1855.8952 0.89520716 1625 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 133.1 115.26 2 0.009028 1 82162 20150910_Q1_SA_NiHu_Masterprac_group15_C 47.639 14.2 2916100 0 0 0 0 2916100 0 522 1625 517 2394 1650 1650 1 ALEYTIYNQELNETRAK Unmodified 2055.0273 0.027283968 1625 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 131.57 129.71 3 3.5568E-08 2 84433 20150910_Q1_SA_NiHu_Masterprac_group13_B 94.007 77.082 18318000 0 6295500 0 5580200 0 6442100 523 1625 518 2395;2396;2397 1651;1652 1651 1 ALFRALK Unmodified 817.51741 0.51740818 1640;692 Q9Y2X3;O00567;H0YDU4;H0Y653;E9PDI8 NOP58;NOP56 Nucleolar protein 58;Nucleolar protein 56 no no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 95.127 86.174 2 0.024653 2 57624 20150910_Q1_SA_NiHu_Masterprac_group10_C 99.384 36.405 7415200 780390 0 1131100 1352900 2567900 1582800 524 1640;692 519 2398;2399;2400;2401;2402 1653;1654 1654 2 ALGAQIEK Unmodified 828.47052 0.47051757 249 Q6IQ49-2;C9JIQ2;Q6IQ49 SDE2 Protein SDE2 homolog yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 65.168 56.679 2 0.020209 1 40405 20150910_Q1_SA_NiHu_Masterprac_group10_B 79.713 0.26157 2750300 283950 769420 1697000 0 0 0 525 249 520 2403;2404;2405 1655 1655 1 ALGLDTGQQQDAQEFSK Unmodified 1834.8697 0.86972069 1264 Q86UV5;Q86UV5-2;B7ZKS7;Q86UV5-3;Q86UV5-7;Q86UV5-4 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 123.14 115.32 2 0.001872 3 79336 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.445 62.17 5358500 0 770670 1743000 0 0 2844800 526 1264 521 2406;2407;2408 1656;1657;1658 1658 3 ALGQEADKGLSGCGIVYCR Unmodified 2052.9721 0.97209405 197 O94762;B7Z8Y7;O94762-2;O94762-3 RECQL5 ATP-dependent DNA helicase Q5 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 121.68 121.38 3 0.026903 1 78078 20150910_Q1_SA_NiHu_Masterprac_group10_B 35.348 20.155 1922900 0 1359700 0 563200 0 0 527 197 522 2409;2410 1659 1659 1 ALGQNKAHTPFRESK Unmodified 1682.8853 0.8852516 193 B7Z6Q6;Q99661;Q99661-2;B7Z7M6;H0Y5Z9 KIF2C Kinesin-like protein KIF2C yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 1 2 49.12 43.931 3;4 6.6087E-05 4 36109 20150910_Q1_SA_NiHu_Masterprac_group13_C 89.46 69.336 50235000 0 4099600 14412000 4281100 8728700 18713000 528 193 523 2411;2412;2413;2414;2415;2416;2417;2418 1660;1661;1662;1663 1661 4 ALGQNPTNAEVLK Unmodified 1353.7252 0.72522871 552 F8W1R7;P60660-2;P60660;G3V1V0;F8VZV5;G8JLA2;B7Z6Z4;F8VPF3;F8W1I5;P14649 MYL6;MYL6B Myosin light polypeptide 6;Myosin light chain 6B yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 105.74 95.234 2 0.0019654 3 65081 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.731 43.486 6729900 1503200 0 1851500 0 0 3375200 529 552 524 2419;2420;2421 1664;1665;1666 1665 2 ALGSAQYEDPRNLHSAGR Unmodified 1940.9453 0.94528567 1447 Q9BTC0 DIDO1 Death-inducer obliterator 1 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 1 2 2 94.41 85.883 3;4 0.0092646 3 58238 20150910_Q1_SA_NiHu_Masterprac_group10_B 42.958 31.85 21756000 470950 5111800 2625900 1152300 3613100 8782400 530 1447 525 2422;2423;2424;2425;2426;2427;2428;2429;2430;2431 1667;1668;1669 1669 2 ALGTAADLGTLAPR Unmodified 1325.7303 0.73031409 1370 Q96B70 LENG9 Leukocyte receptor cluster member 9 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 133.09 128.13 2 0.0025478 1 88117 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.29 30.063 2666600 0 0 0 0 0 2666600 531 1370 526 2432 1670 1670 1 ALHGEATNSMASDNQVRK Unmodified 1927.917 0.91702201 968 P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 58.106 48.881 4 0.00078174 3 40314 20150910_Q1_SA_NiHu_Masterprac_group15_C 77.051 64.85 1704900 0 0 343390 0 898380 463090 532 968 527 2433;2434;2435 1671;1672;1673 1673 3 ALHLGDTVDSDQFK Unmodified 1544.7471 0.74708636 1502 Q9H8N7 ZNF395 Zinc finger protein 395 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 120.8 118.07 3 0.0089511 1 76157 20150910_Q1_SA_NiHu_Masterprac_group10_B 50.46 34.11 2334000 0 811170 0 0 0 1522800 533 1502 528 2436;2437 1674 1674 1 ALIAAQYSGAQVR Unmodified 1346.7306 0.73064844 127 P26641;B4DTG2 EEF1G Elongation factor 1-gamma yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 118.55 109.19 2 5.7312E-16 5 74712 20150910_Q1_SA_NiHu_Masterprac_group15_B 112.02 69.18 34921000 2812800 6712600 3258000 771910 4910300 16456000 534 127 529 2438;2439;2440;2441;2442;2443 1675;1676;1677;1678;1679 1677 5 ALIEMEK Unmodified 832.43644 0.43644025 1133 Q15233;F5GYZ3;C9JYS8;H7C367 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 94.904 87.308 2 0.022651 4 64397 20150910_Q1_SA_NiHu_Masterprac_group15_C 107.32 19.288 7068400 676060 824350 0 0 2450500 3117500 535 1133 530 2444;2445;2446;2447 1680;1681;1682;1683 1681 4 ALIEMEKQQQDQVDRNIK Unmodified 2185.1161 0.11611575 1133 Q15233;F5GYZ3;C9JYS8;H7C367 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 112.33 103.47 3 0.01161 4 69553 20150910_Q1_SA_NiHu_Masterprac_group10_C 49.066 38.056 10626000 1932000 0 2281300 787350 0 5625700 536 1133 531 2448;2449;2450;2451 1684;1685;1686;1687 1686 4 ALILSPTR Unmodified 869.53345 0.53345218 1336 Q8TDD1;Q8TDD1-2;F8VRX4 DDX54 ATP-dependent RNA helicase DDX54 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 108.01 97.839 2 0.029415 1 66787 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.379 28.781 16239000 0 0 0 0 12549000 3689900 537 1336 532 2452;2453 1688 1688 1 ALIYTMMELKK 2 Oxidation (M) 1371.7142 0.71419502 1666 yes yes 0 2 1 By matching By MS/MS By matching By matching By matching By matching 1 48.002 45.393 3 0.040677 1 32615 20150910_Q1_SA_NiHu_Masterprac_group10_B 43.635 43.635 521950 0 521950 0 0 0 0 + 538 1666 533 2454 1689 1689 185 0 ALKAQNDLIWNIK Unmodified 1525.8617 0.86166261 815 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 133.27 133.27 2 0.0004583 1 86326 20150910_Q1_SA_NiHu_Masterprac_group13_B 91.307 58.002 4143800 0 0 0 4143800 0 0 539 815 534 2455 1690 1690 0 ALKNPSEEYGK Unmodified 1234.6194 0.61936665 614 H0Y818;P40692;F5H745;E9PEB4;H0Y3I0;E9PCU2;C9JZ54 MLH1 DNA mismatch repair protein Mlh1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 54.141 48.165 3 0.0074498 3 39426 20150910_Q1_SA_NiHu_Masterprac_group13_C 68.786 45.408 2553300 0 394480 668800 283580 484880 721530 540 614 535 2456;2457;2458;2459;2460 1691;1692;1693 1692 3 ALLAMYTNQAEQCRK Unmodified 1795.8709 0.87092344 600 G5E9Z8;H0YH39;O76094 SRP72 Signal recognition particle subunit SRP72 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 115.31 113.03 3 0.0023687 1 77088 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.869 41.144 1812900 0 0 0 826030 0 986900 541 600 536 2461;2462 1694 1694 1 ALLCKPITQTK Unmodified 1271.7271 0.72714296 1213 Q5VZL5-2;Q5VZL5;H7C1I7;Q5VZL5-3;Q5VZL5-4 ZMYM4 Zinc finger MYM-type protein 4 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 83.71 76.31 2;3 0.011762 6 52436 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.073 47.487 10642000 0 1909800 1909300 1420500 2338600 3063800 542 1213 537 2463;2464;2465;2466;2467;2468;2469;2470;2471;2472 1695;1696;1697;1698;1699;1700 1700 6 ALLDASETTSTR Unmodified 1263.6307 0.63065962 1105 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 93.747 83.629 2 0.0027469 6 57091 20150910_Q1_SA_NiHu_Masterprac_group10_B 80.69 56.436 6126900 602120 0 925410 534910 2320200 1744200 543 1105 538 2473;2474;2475;2476;2477;2478;2479 1701;1702;1703;1704;1705;1706 1705 5 ALLDASETTSTRK Unmodified 1391.7256 0.72562264 1105 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 74.959 67.458 2;3 1.8365E-59 11 47047 20150910_Q1_SA_NiHu_Masterprac_group15_B 134.99 134.99 45269000 6568300 4407300 5497500 3362900 13450000 11983000 544 1105 539 2480;2481;2482;2483;2484;2485;2486;2487;2488;2489;2490;2491;2492 1707;1708;1709;1710;1711;1712;1713;1714;1715;1716;1717 1711 11 ALLELQQTTVKEK Unmodified 1499.8559 0.85590853 208 Q7Z589-2;E9PMC9;Q7Z589;Q17RM7;B7ZKU2;B7ZKU0 EMSY;C11orf30 Protein EMSY yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 114.1 108.26 3 0.0012891 2 74164 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.287 42.288 3257700 0 617170 343120 160040 0 2137300 545 208 540 2493;2494;2495;2496 1718;1719 1718 2 ALLEMAEEK Unmodified 1032.5161 0.51614714 907 P40222 TXLNA Alpha-taxilin yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 116.19 108.09 2 0.0065883 2 73873 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.265 62.095 12767000 0 1330600 1161100 1671700 3650900 4953200 546 907 541 2497;2498;2499;2500;2501 1720;1721 1720 2 ALLERTGYTLDVTTGQRK Unmodified 2021.0906 0.090552927 731;715 O43390;O43390-2;E7ETM7;F6UXX1;O60506-2;O60506;O60506-4;O60506-3 HNRNPR;SYNCRIP Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 123.61 121.76 3 0.026984 1 82763 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.208 27.483 3306600 0 1006000 0 1032100 0 1268500 547 715;731 542 2502;2503;2504 1722 1722 1 ALLLKGKAPVDPECTAK Unmodified 1810.0023 0.0022551915 133 E9PJ27;B4DV82;G3V167;Q9UGN5-2;Q9UGN5 PARP2 Poly [ADP-ribose] polymerase 2 yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 106.06 99.095 3 0.00072486 5 65738 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.824 58.824 8212900 1634400 1090200 0 1425400 2520500 1542400 548 133 543 2505;2506;2507;2508;2509 1723;1724;1725;1726;1727 1726 3 ALLMCEACR Unmodified 1122.4984 0.49840536 270 C9JU95;P40938 RFC3 Replication factor C subunit 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 106.01 96.159 2 0.026416 1 65711 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.299 66.299 15361000 0 2926600 1403800 0 1828600 9201800 549 270 544 2510;2511;2512;2513 1728 1728 1 ALLPELR Unmodified 810.49634 0.49633839 1287 Q8IXB1;Q8IXB1-2;F8W884 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 132.93 127.97 2 3.2439E-07 2 87923 20150910_Q1_SA_NiHu_Masterprac_group15_B 121.29 7.2693 11148000 0 0 0 0 0 11148000 550 1287 545 2514 1729;1730 1729 2 ALLQELQR Unmodified 969.56073 0.56072956 337 H0YCY5;E9PNY0;G8JLP0;Q9UIF7-6;Q9UIF7-5;Q9UIF7-4;Q9UIF7-3;Q9UIF7-2;Q9UIF7;E5KP25 MUTYH A/G-specific adenine DNA glycosylase yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 119.32 116.58 2 0.026373 1 79214 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.255 28.283 1017300 0 220470 0 0 0 796780 551 337 546 2515;2516 1731 1731 1 ALLQMAEEK Unmodified 1031.5321 0.53213155 1546 Q9NUQ3;Q9NUQ3-2 TXLNG Gamma-taxilin yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 112.93 104.91 2 0.036278 1 74517 20150910_Q1_SA_NiHu_Masterprac_group15_C 61.691 38.62 10602000 0 1751700 1289400 1544800 2568300 3448100 552 1546 547 2517;2518;2519;2520;2521 1732 1732 1 ALLQQQPEDDSK Unmodified 1370.6678 0.66777341 521 Q96K98;F5H5Y3;G3V1U4;Q9UHB9;B3KUU5;Q9UHB9-2;E7ETK6 SRP68 Signal recognition particle subunit SRP68 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 72.672 67.533 2 0.0018295 4 53857 20150910_Q1_SA_NiHu_Masterprac_group13_C 89.805 70.127 3700100 0 742660 771750 635860 0 1549800 553 521 548 2522;2523;2524;2525 1733;1734;1735;1736 1735 4 ALLQTHPEAQR Unmodified 1262.6731 0.67313356 683 Q96CP2;I3L1Y9;I3L4I0 FLYWCH2 FLYWCH family member 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 4 2 67.79 59.943 2;3 9.5353E-56 13 43546 20150910_Q1_SA_NiHu_Masterprac_group10_C 141.91 118.16 179060000 23113000 37087000 27479000 10716000 37325000 43341000 554 683 549 2526;2527;2528;2529;2530;2531;2532;2533;2534;2535;2536;2537;2538;2539;2540;2541 1737;1738;1739;1740;1741;1742;1743;1744;1745;1746;1747;1748;1749 1748 13 ALLQTHPEAQRAIEAAPQEPEQK Unmodified 2554.314 0.31396394 683 Q96CP2;I3L1Y9 FLYWCH2 FLYWCH family member 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 3 4 2 115.47 105.35 3;4 1.0466E-21 10 69368 20150910_Q1_SA_NiHu_Masterprac_group10_B 94.707 79.618 558010000 112520000 72083000 141640000 95114000 64377000 72282000 555 683 550 2542;2543;2544;2545;2546;2547;2548;2549;2550;2551;2552;2553;2554;2555;2556;2557 1750;1751;1752;1753;1754;1755;1756;1757;1758;1759 1757 10 ALLQTHPEAQRAIEAAPQEPEQKR Unmodified 2710.4151 0.41507496 683 Q96CP2;I3L1Y9 FLYWCH2 FLYWCH family member 2 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 110.13 99.005 4 0.0034566 1 71202 20150910_Q1_SA_NiHu_Masterprac_group15_C 45.885 37.701 5119200 1895000 0 0 0 1079900 2144300 556 683 551 2558;2559;2560 1760 1760 1 ALLSDMVR Unmodified 903.48479 0.48478743 696 O14776-2;O14776;G3V220 TCERG1 Transcription elongation regulator 1 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 129.85 122.97 2 1.3314E-24 3 85358 20150910_Q1_SA_NiHu_Masterprac_group15_B 131.03 72.114 20263000 3307400 0 0 722300 0 16233000 557 696 552 2561;2562;2563 1761;1762;1763 1762 3 ALLTPVAIAAGRK Unmodified 1279.7976 0.79760579 780 P00390-5;P00390-4;P00390-2;P00390-3;P00390 GSR Glutathione reductase, mitochondrial yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 131.98 126.55 3 0.00094828 3 84228 20150910_Q1_SA_NiHu_Masterprac_group10_B 73.435 65.028 25606000 8710500 9605800 0 7289600 0 0 558 780 553 2564;2565;2566 1764;1765;1766 1765 3 ALLVQVVNK Unmodified 982.61752 0.61751616 1037 Q03701;F5H3Y6 CEBPZ CCAAT/enhancer-binding protein zeta yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 124.14 115.89 2 0.022914 2 76200 20150910_Q1_SA_NiHu_Masterprac_group10_C 68.224 28.919 3538900 2029200 1509700 0 0 0 0 559 1037 554 2567;2568 1767;1768 1768 2 ALMTSHGSVEGR Unmodified 1243.5979 0.5979197 598 Q9H8V3-2;Q9H8V3;G5E9L8;Q9H8V3-3;H7C103 ECT2 Protein ECT2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 52.044 50.99 3 0.0087972 2 36454 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.511 39.887 552400 0 0 0 0 0 552400 560 598 555 2569 1769;1770 1770 2 ALNSIIDVYHK Unmodified 1271.6874 0.68738664 794 P05109 S100A8 Protein S100-A8;Protein S100-A8, N-terminally processed yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 131.76 125.87 3 1.1429E-41 4 84009 20150910_Q1_SA_NiHu_Masterprac_group10_B 131.09 106.59 27591000 0 9995300 8827100 2984500 0 5783800 561 794 556 2570;2571;2572;2573 1771;1772;1773;1774 1774 4 ALNVAPVRDTK Acetyl (Protein N-term) 1224.6826 0.68263561 764 O95205;Q5VZF2-3;Q5VZF2-2;Q5VZF2;B4E3F7 MBLL;MBNL2 Muscleblind-like protein 2 yes no 1 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 111.42 102.41 2 0.0045253 1 69700 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.625 49.591 4426800 278360 1185600 722060 0 0 2240700 562 764 557 2574;2575;2576;2577 1775 1775 1 ALPASETPK Unmodified 912.49165 0.49164694 753 O76021;B4DJ58 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 53.831 47.854 2 0.026416 1 34542 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.299 21.546 3340100 0 852020 1866800 63815 436280 121150 563 753 558 2578;2579;2580;2581;2582 1776 1776 1 ALPCIVDVRDEQQISAAVEK Unmodified 2240.1471 0.14708153 1239 Q6YN16-2;Q6YN16 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 133.41 115.41 3 0.014812 1 84410 20150910_Q1_SA_NiHu_Masterprac_group13_C 71.143 46.776 0 0 0 0 0 0 0 564 1239 559 2583 1777 1777 1 ALPDRALVNCQYSSATFSTGERK Unmodified 2570.2547 0.2547345 1526 Q9NPD3;E9PI41 EXOSC4 Exosome complex component RRP41 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 130.34 125.38 4 2.6178E-10 1 85123 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.109 70.291 14464000 0 0 0 0 0 14464000 565 1526 560 2584 1778 1778 1 ALPLEAEVAPVK Unmodified 1235.7125 0.71253876 388 E7EVA0;P27816-6;P27816;P27816-2 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.98 132.38 2 0.015258 1 85970 20150910_Q1_SA_NiHu_Masterprac_group10_B 54.65 39.833 34327000 0 34327000 0 0 0 0 566 388 561 2585 1779 1779 1 ALPPLPRPPTPK Unmodified 1282.7761 0.77614207 1306 Q8N6T7-4;Q8N6T7-2;Q8N6T7;B4DDV3 SIRT6 NAD-dependent protein deacetylase sirtuin-6 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 131.18 126.22 3 0.036823 1 86019 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.653 36.007 2647600 0 0 0 0 0 2647600 567 1306 562 2586 1780 1780 1 ALQAQVQYQQQHEQQK Unmodified 1953.9657 0.96568676 145 F5GXY5;B4DYM7;Q6UVJ0 SASS6 Spindle assembly abnormal protein 6 homolog yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 70.605 63.277 3 0.0015714 1 44212 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.248 50.502 4125100 497280 658090 880380 227720 814130 1047600 568 145 563 2587;2588;2589;2590;2591;2592 1781 1781 1 ALQEEIDR Unmodified 972.48762 0.4876242 1157 Q1ED39;H3BPL4;H3BNU8 KNOP1 Lysine-rich nucleolar protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 67.884 64.801 2 0.0205 1 45078 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.474 30.68 4095600 632990 1240200 0 469320 0 1753100 569 1157 564 2593;2594;2595;2596 1782 1782 1 ALQEEIDRESGK Unmodified 1373.6787 0.67867245 1157 Q1ED39;H3BPL4;H3BNU8 KNOP1 Lysine-rich nucleolar protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 2 2 2 2 72.626 65.218 2;3 9.4484E-50 9 52366 20150910_Q1_SA_NiHu_Masterprac_group13_C 131.79 84.998 79660000 17225000 8222400 10319000 8963800 15259000 19671000 570 1157 565 2597;2598;2599;2600;2601;2602;2603;2604;2605;2606;2607;2608;2609 1783;1784;1785;1786;1787;1788;1789;1790;1791 1786 9 ALQEESLGMEAQVER Unmodified 1688.8039 0.80394931 675 H9KV46;Q86Y91;Q86Y91-2;Q86Y91-3;Q86Y91-4 KIF18B Kinesin-like protein KIF18B yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 125.22 122.43 2 0.0013603 2 82911 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.978 52.399 3255600 0 1345200 0 0 0 1910500 571 675 566 2610;2611 1792;1793 1792 2 ALQEGEGDLSISADRLSEK Unmodified 2016.9964 0.99637777 938 P49589;P49589-3;P49589-2;B4DKY1;A8MVQ3 CARS Cysteine--tRNA ligase, cytoplasmic yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 130.43 119.16 3 3.3197E-17 5 77303 20150910_Q1_SA_NiHu_Masterprac_group10_C 97.502 82.294 129820000 48334000 0 24382000 10566000 6781000 39756000 572 938 567 2612;2613;2614;2615;2616 1794;1795;1796;1797;1798 1798 5 ALQGSLGGVEK Unmodified 1057.5768 0.57677356 634 O75150-4;H3BP71;O75150;F8W8Z4;F6SYU7;Q6ZN99 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 79.441 78.086 2 0.020499 1 53796 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.342 28.301 2435500 0 0 0 0 0 2435500 573 634 568 2617 1799 1799 0 ALQHMAAMSSAQIVSATAIHNK Unmodified 2279.1515 0.1514554 12 A4FUP2;H0YEJ9;P28347;H0YE88;E9PKB7 TEAD1 Transcriptional enhancer factor TEF-1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 131.49 121.99 3;4 0 12 86401 20150910_Q1_SA_NiHu_Masterprac_group15_B 188.54 163.19 198170000 37777000 30998000 20544000 35655000 5066600 68128000 574 12 569 2618;2619;2620;2621;2622;2623;2624;2625;2626;2627;2628;2629 1800;1801;1802;1803;1804;1805;1806;1807;1808;1809;1810;1811 1803 11 ALQHMAAMSSAQIVSATAIHNK Oxidation (M) 2295.1464 0.14637002 12 A4FUP2;H0YEJ9;P28347;H0YE88;E9PKB7 TEAD1 Transcriptional enhancer factor TEF-1 yes no 0 1 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 2 1 1 2 123.32 112.13 3;4 3.2098E-06 4 79995 20150910_Q1_SA_NiHu_Masterprac_group13_C 73.722 58.061 19243000 1212400 0 11556000 1132300 395860 4946100 575 12 569 2630;2631;2632;2633;2634;2635;2636 1812;1813;1814;1815 1812 1;2 4 ALQHTESPSETNKPHSK Unmodified 1889.9232 0.92315325 1122 Q14CA3;Q14669;B4DYJ6;G5E9G6;C9JLD7;C9JLJ5;C9JSX9 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 27.154 22.616 4 0.001905 2 15209 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.148 41.215 2640200 0 771380 1868900 0 0 0 576 1122 570 2637;2638 1816;1817 1817 2 ALQQEQEIEQR Unmodified 1370.679 0.6790068 1344;170 Q86YP4;B5MC40;Q86YP4-2;B4DKZ7;F5H7D9;H7C3H1;Q8WXI9 GATAD2A;GATAD2B Transcriptional repressor p66-alpha;Transcriptional repressor p66-beta no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 74.188 66.668 2 6.5271E-20 7 53172 20150910_Q1_SA_NiHu_Masterprac_group13_C 119.74 70.41 124120000 3213800 35325000 25973000 1126500 2696800 55788000 577 170;1344 571 2639;2640;2641;2642;2643;2644;2645 1818;1819;1820;1821;1822;1823;1824 1819 7 ALQQEQEIEQRLLQQGTAPAQAK Unmodified 2577.3511 0.35107772 170 Q86YP4;B5MC40;Q86YP4-2;B4DKZ7;F5H7D9;H7C3H1 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 133.13 126.93 3 3.4432E-84 3 85984 20150910_Q1_SA_NiHu_Masterprac_group10_B 119.18 105.64 153930000 0 66098000 75185000 12651000 0 0 578 170 572 2646;2647;2648 1825;1826;1827 1827 3 ALQQEQEIEQRLQQQAALSPTTAPAVSSVSK Unmodified 3335.7321 0.73211159 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 133.4 132.8 3 3.0344E-05 2 86470 20150910_Q1_SA_NiHu_Masterprac_group10_B 40.067 24.828 105710000 0 105710000 0 0 0 0 579 1344 573 2649 1828;1829 1829 2 ALQQVQEKEVR Unmodified 1326.7256 0.72556306 1121 Q14980-2;Q14980 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 53.542 51.61 2 0.015557 1 36961 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.728 47.947 655410 0 309210 0 0 0 346210 580 1121 574 2650;2651 1830 1830 1 ALQRPSAAAPQAENGPAAAPAVAAPAATEAPK Unmodified 2964.5417 0.54173204 206 B7ZKM0;Q15020;F5H0B8 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 130.06 114.37 3 0.0016332 1 75646 20150910_Q1_SA_NiHu_Masterprac_group10_C 33.153 18.069 2330500 2330500 0 0 0 0 0 581 206 575 2652 1831 1831 1 ALQTERNDLNK Unmodified 1300.6735 0.67352749 907 P40222 TXLNA Alpha-taxilin yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 2 2 2 2 2 46.56 41.177 2;3 0.01176 2 29232 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.076 38.821 7765100 497830 1320600 2187100 665920 1081400 2012300 582 907 576 2653;2654;2655;2656;2657;2658;2659;2660;2661;2662;2663 1832;1833 1833 2 ALQTERNELNEK Unmodified 1443.7318 0.73177065 1546 Q9NUQ3;Q9NUQ3-2 TXLNG Gamma-taxilin yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 56.436 51.382 3 0.019785 2 36657 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.247 5.2616 10186000 1382100 1400000 0 910270 3201200 3292700 583 1546 577 2664;2665;2666;2667;2668 1834;1835 1834 2 ALQYFHPK Unmodified 1002.5287 0.52870115 1509 Q9H9L3 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 88.358 79.204 2 0.0058315 4 54284 20150910_Q1_SA_NiHu_Masterprac_group10_C 107.59 72.393 30447000 3089000 2844800 3929800 0 9550700 11033000 584 1509 578 2669;2670;2671;2672;2673 1836;1837;1838;1839 1839 4 ALRAAAYSAQVQPVDGATR Unmodified 1944.0177 0.017722335 1499 Q9H7E9;Q9H7E9-2 C8orf33 UPF0488 protein C8orf33 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 100.97 98.01 3 0.015117 1 66795 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.364 24.435 1201200 0 0 0 0 0 1201200 585 1499 579 2674 1840 1840 1 ALRGVTGPNIEK Unmodified 1253.7092 0.70918471 246 F8VZ02;C9JGM8;C9JW67;F8W6C2;Q9NUQ6-2 SPATS2L SPATS2-like protein yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 83.665 76.266 3 0.0019784 3 59594 20150910_Q1_SA_NiHu_Masterprac_group13_C 89.43 51.874 10820000 0 2988400 1804300 1034500 1501500 3491200 586 246 580 2675;2676;2677;2678;2679 1841;1842;1843 1841 3 ALRIYHEQQVKTR Unmodified 1640.9111 0.91107242 1201 Q5UIP0-2;Q5UIP0;H7C2B5 RIF1 Telomere-associated protein RIF1 yes no 0 0 2 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 62.729 56.051 4 0.001084 4 46013 20150910_Q1_SA_NiHu_Masterprac_group13_C 76.728 57.906 6080100 0 812050 1646600 922960 697780 2000800 587 1201 581 2680;2681;2682;2683;2684 1844;1845;1846;1847 1845 4 ALRLNLVGEK Unmodified 1111.6713 0.67134264 615 Q96EY4;H0Y9X1;D6RA57;D6RE67;D6RC31 TMA16 Translation machinery-associated protein 16 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 116.55 110.67 2 0.025545 1 75769 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.841 39.177 32603000 0 4750500 0 174560 294030 27384000 588 615 582 2685;2686;2687;2688 1848 1848 1 ALRSDSYVELSQYR Unmodified 1685.8373 0.83729835 399 E9PAR5;P52298;F8WE41 NCBP2 Nuclear cap-binding protein subunit 2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 121.93 119.25 3 0.010411 1 76719 20150910_Q1_SA_NiHu_Masterprac_group10_B 50.874 31.598 4236900 0 1226000 0 0 0 3011000 589 399 583 2689;2690 1849 1849 1 ALRTDYNASVSVPDSSGPER Unmodified 2120.0134 0.013424818 984 P61978-3;P61978-2;P61978;Q5T6W5;Q5T6W2 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 112.64 104.62 3 0.00015174 4 75997 20150910_Q1_SA_NiHu_Masterprac_group13_C 65.416 52.526 103230000 0 49664000 9851200 7575500 10788000 25350000 590 984 584 2691;2692;2693;2694;2695 1850;1851;1852;1853 1851 4 ALRVQQSSESSTSSPSQHEATPGAR Unmodified 2597.243 0.24298384 97 B4DLG2;O75152;E9PQ61;E9PBY7 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 1 65.929 58.284 3;4 7.4408E-10 9 46695 20150910_Q1_SA_NiHu_Masterprac_group15_C 65.189 57.916 56891000 11747000 5918300 5923000 9187800 16256000 7859500 591 97 585 2696;2697;2698;2699;2700;2701;2702;2703;2704;2705;2706;2707 1854;1855;1856;1857;1858;1859;1860;1861;1862 1859 9 ALRVQQSSESSTSSPSQHEATPGARR Unmodified 2753.3441 0.34409486 97 B4DLG2;O75152;E9PQ61;E9PBY7 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 2 By MS/MS By matching By matching By MS/MS By matching By MS/MS 3 2 2 2 55.336 51.999 4;5 0.0015802 6 37762 20150910_Q1_SA_NiHu_Masterprac_group10_C 47.564 33.708 11434000 4915800 1131700 0 2486500 0 2899600 592 97 586 2708;2709;2710;2711;2712;2713;2714;2715;2716 1863;1864;1865;1866;1867;1868 1868 6 ALSAVSAQAAAAQK Unmodified 1285.699 0.69901396 688 Q5TBP5;O00268 TAF4 Transcription initiation factor TFIID subunit 4 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 85.209 78.04 2 0.0011063 5 53723 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.78 25.315 5478300 573440 1676200 0 0 1757200 1471500 593 688 587 2717;2718;2719;2720 1869;1870;1871;1872;1873 1869 5 ALSGTSPDDVQPGPSVGPPSKDK Unmodified 2235.1019 0.10190547 1642 Q9Y314 NOSIP Nitric oxide synthase-interacting protein yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 95.913 93.555 3 0.013718 1 63887 20150910_Q1_SA_NiHu_Masterprac_group15_B 35.992 8.7212 770440 0 0 0 0 0 770440 594 1642 588 2721 1874 1874 1 ALSGTSPDDVQPGPSVGPPSKDKDK Unmodified 2478.2238 0.22381152 1642 Q9Y314 NOSIP Nitric oxide synthase-interacting protein yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 4 92.891 85.514 3;4 4.9611E-21 9 58524 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.136 75.348 48344000 4388900 11471000 8319100 2681000 6834000 14650000 595 1642 589 2722;2723;2724;2725;2726;2727;2728;2729;2730;2731;2732;2733;2734;2735 1875;1876;1877;1878;1879;1880;1881;1882;1883 1878 9 ALSRQEMQEVQSSR Unmodified 1647.7999 0.79986699 863 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 77.02 69.429 3 7.997E-86 7 49673 20150910_Q1_SA_NiHu_Masterprac_group10_C 137.62 137.62 66326000 13268000 10495000 8832300 5851300 14386000 13493000 596 863 590 2736;2737;2738;2739;2740;2741;2742 1884;1885;1886;1887;1888;1889;1890 1890 7 ALSRQEMQEVQSSR Oxidation (M) 1663.7948 0.79478161 863 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 1 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 50.297 43.408 3 0.024975 1 36178 20150910_Q1_SA_NiHu_Masterprac_group13_C 49.62 29.84 2538700 472560 593190 377390 0 656260 439310 597 863 590 2743;2744;2745;2746;2747 1891 1891 95 0 ALSSDSILSPAPDAR Unmodified 1498.7627 0.76273643 1278 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 129.21 124.25 2 0.0072937 1 83941 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.988 32.294 1214700 0 0 0 0 0 1214700 598 1278 591 2748 1892 1892 1 ALSSSADDASLVNASISSSVK Unmodified 2007.996 0.99604342 1533 Q9NQW6;Q9NQW6-2 ANLN Actin-binding protein anillin yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 132.82 123.52 2 9.0443E-60 2 83984 20150910_Q1_SA_NiHu_Masterprac_group13_C 118.46 96.095 35395000 0 24782000 10613000 0 0 0 599 1533 592 2749;2750 1893;1894 1893 2 ALSTMDLQK Unmodified 1005.5165 0.51648149 541 F8VUA2;Q9HD42;F8VVT7;F5H875 CHMP1A Charged multivesicular body protein 1a yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 1 95.615 86.19 2 1.9159E-06 5 59108 20150910_Q1_SA_NiHu_Masterprac_group10_C 113.62 69.814 101510000 17814000 13889000 12058000 0 21327000 36422000 600 541 593 2751;2752;2753;2754;2755;2756 1895;1896;1897;1898;1899 1899 5 ALTHLEMR Unmodified 969.50659 0.5065855 754 O94776;Q68DB1 MTA2;DKFZp686F2281 Metastasis-associated protein MTA2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 83.472 72.143 2 0.034579 1 50033 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.812 42.04 35859000 0 0 12831000 0 729150 22299000 601 754 594 2757;2758;2759 1900 1900 1 ALTPVSIAHGTPVMR Unmodified 1548.8446 0.84463234 196 B7Z8R4;Q15723-4;E9PCX3;Q15723-2;Q15723-3;Q15723-1;Q15723 ELF2 ETS-related transcription factor Elf-2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 132.04 127.08 3 0.0020359 1 86769 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.215 38.757 11204000 0 0 0 0 0 11204000 602 196 595 2760 1901 1901 1 ALTQRPDYIK Unmodified 1203.6612 0.66117189 1599 Q9UJX3-2;Q9UJX3;F8VVT8;F8VVU6;F8VZ62 ANAPC7 Anaphase-promoting complex subunit 7 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 81.732 73.084 3 0.03392 1 50661 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.013 24.255 3285200 0 0 0 0 1078000 2207300 603 1599 596 2761;2762 1902 1902 1 ALTSPSLLPR Unmodified 1053.6182 0.61824444 608 H0Y413 PRICKLE3 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 2 133.29 120.29 2 0.0049765 3 79079 20150910_Q1_SA_NiHu_Masterprac_group10_C 87.258 1.3962 617580000 77822000 318780000 0 0 220980000 0 604 608 597 2763;2764;2765;2766 1903;1904;1905 1905 3 ALTVAHELLCNKPEEEK Unmodified 1979.9986 0.99862638 1037 Q03701;F5H3Y6 CEBPZ CCAAT/enhancer-binding protein zeta yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 117.59 110.37 3 3.1514E-09 3 75929 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.067 79.288 12363000 2846100 1787400 0 0 0 7729500 605 1037 598 2767;2768;2769 1906;1907;1908 1906 2 ALVADSHPESER Unmodified 1309.6262 0.62624295 1025 Q01082-3;Q01082-2;Q01082 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 48.163 47.209 3 0.010786 1 33632 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.551 39.416 548460 0 0 0 0 0 548460 606 1025 599 2770 1909 1909 1 ALVAYYQK Unmodified 954.51747 0.51746776 986 P62249 RPS16 40S ribosomal protein S16 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 92.793 86.777 2 0.020507 3 58969 20150910_Q1_SA_NiHu_Masterprac_group13_B 79.469 29.342 9203400 1007500 751970 0 1041100 3997000 2405900 607 986 600 2771;2772;2773;2774;2775 1910;1911;1912 1910 3 ALVDHENVISCPHLGASTK Unmodified 2047.0157 0.015673424 711 O43175;Q5SZU1;F5H634 PHGDH D-3-phosphoglycerate dehydrogenase yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 1 2 122.59 110.97 3;4 0.00032227 4 75910 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.252 50.327 26375000 4443100 0 5369800 0 0 16562000 608 711 601 2776;2777;2778;2779;2780 1913;1914;1915;1916 1915 3 ALVNCQYSSATFSTGERK Unmodified 2017.9527 0.95273882 1526 Q9NPD3;E9PI41 EXOSC4 Exosome complex component RRP41 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 118.97 105.63 3 0.00079382 1 72272 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.606 49.465 3827900 378370 0 397940 0 1053500 1998000 609 1526 602 2781;2782;2783;2784 1917 1917 1 ALVNHSGLSAPVPR Unmodified 1416.7837 0.78374664 1578 Q9P2D1 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 101.72 99.39 3 0.0054505 1 67842 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.09 32.035 2462000 0 605610 0 0 0 1856400 610 1578 603 2785;2786 1918 1918 1 ALVNTTGYQNDSPLHDAAK Unmodified 2013.9756 0.97558275 386 E7EUI3;Q99728 BARD1 BRCA1-associated RING domain protein 1 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 129.54 113.85 3 1.8893E-38 1 75176 20150910_Q1_SA_NiHu_Masterprac_group10_C 111.77 100.13 8103200 8103200 0 0 0 0 0 611 386 604 2787 1919 1919 1 ALVRECLAETER Unmodified 1445.7297 0.72966216 752 O75956 CDK2AP2 Cyclin-dependent kinase 2-associated protein 2 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 91.689 82.416 3 0.0018409 3 56470 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.17 49.834 6581500 0 0 1766400 0 0 4815100 612 752 605 2788;2789 1920;1921;1922 1922 3 ALVSGKPAESSAVAATEK Unmodified 1714.9101 0.91012895 763 O95182 NDUFA7 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 80.764 77.63 3 0.0047183 2 53537 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.223 35.848 2907200 645610 554360 0 417540 0 1289700 613 763 606 2790;2791;2792;2793 1923;1924 1924 2 ALVTLSSGDMRR Unmodified 1304.6871 0.68706906 909 P40937;F8W9B4;P40937-2 RFC5 Replication factor C subunit 5 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 100.87 97.907 3 0.0024908 1 66720 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.64 31.262 2176200 0 0 0 0 0 2176200 614 909 607 2794 1925 1925 1 ALWFQGR Unmodified 876.46062 0.46062159 52 P43243;A8MXP9;D6REM6;H0Y8T4;B3KM87;P43243-2 MATR3 Matrin-3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 132.67 127.71 2 0.040642 1 87672 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.454 50.304 5766600 0 0 0 0 0 5766600 615 52 608 2795 1926 1926 1 ALYSTAMESIQGEAR Unmodified 1625.7719 0.7719209 32 Q99755-2;Q99755-3;A6PW57;Q99755;Q99755-4;B4DY52;A2A3N6 PIP5K1A;PIPSL Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha;Putative PIP5K1A and PSMD4-like protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 133.21 128.25 2 0.0084726 1 88240 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.391 22.849 4276400 0 0 0 0 0 4276400 616 32 609 2796 1927 1927 1 ALYYQDEPQK Unmodified 1253.5928 0.59281755 1398 Q96IZ5-2;Q96IZ5 RBM41 RNA-binding protein 41 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 85.378 76.284 2 0.0070719 3 52669 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.817 60.308 3120600 298450 467640 524770 0 734450 1095300 617 1398 610 2797;2798;2799;2800;2801 1928;1929;1930 1929 3 AMAEWVKQQAER Unmodified 1445.7085 0.70853279 249 Q6IQ49-2;C9JIQ2;Q6IQ49 SDE2 Protein SDE2 homolog yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 108.5 99.756 3 0.014798 1 66741 20150910_Q1_SA_NiHu_Masterprac_group10_C 55.261 38.883 3418600 824540 417210 0 0 795370 1381500 618 249 611 2802;2803;2804;2805 1931 1931 1 AMDLAQAGSTVESK Unmodified 1406.6711 0.67114423 414 Q5JTH9-2;E9PCK7;Q5JTH9;F5H456 RRP12 RRP12-like protein yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 107.75 98.969 2 1.2556E-69 6 67327 20150910_Q1_SA_NiHu_Masterprac_group15_B 133.47 104.11 12427000 1282100 1714100 807510 729580 3258700 4634500 619 414 612 2806;2807;2808;2809;2810;2811 1932;1933;1934;1935;1936;1937 1934 6 AMDSSLQAR Acetyl (Protein N-term) 1019.4706 0.47059393 193 B7Z6Q6;Q99661;Q5JR91 KIF2C Kinesin-like protein KIF2C yes no 1 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 95.702 87.495 2 0.0019994 6 59695 20150910_Q1_SA_NiHu_Masterprac_group10_B 105.52 60.439 37830000 6145800 4364800 6202300 2503500 6591500 12022000 620 193 613 2812;2813;2814;2815;2816;2817;2818 1938;1939;1940;1941;1942;1943 1942 6 AMDTPKPAGGDEK Unmodified 1315.6078 0.60781569 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 2 2 2 43.469 38.314 2;3 0.0013983 4 27027 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.964 63.378 37608000 903000 7948800 18598000 2033000 2188500 5937200 621 919;920 614 2819;2820;2821;2822;2823;2824;2825;2826;2827;2828;2829 1944;1945;1946;1947 1945 4 AMDTPKPAVSDEK Unmodified 1387.6653 0.66533057 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 2 2 64.431 57.307 2;3 9.8645E-16 11 46101 20150910_Q1_SA_NiHu_Masterprac_group15_C 111.31 75.539 91400000 8237200 17258000 12301000 5137000 17320000 31145000 622 919;920 615 2830;2831;2832;2833;2834;2835;2836;2837;2838;2839;2840;2841;2842;2843 1948;1949;1950;1951;1952;1953;1954;1955;1956;1957;1958 1954 11 AMDTPKPAVSDEK Oxidation (M) 1403.6602 0.66024519 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 1 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 45.749 40.648 3 0.020172 1 28633 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.728 55.072 3447500 406840 689500 780600 0 0 1570500 623 919;920 615 2844;2845;2846;2847 1959 1959 103 1 AMDTPKPAVSDEKNINTFVETPVQK Oxidation (M) 2774.3797 0.37966024 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 1 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 130.07 120.57 4 4.4589E-96 7 81495 20150910_Q1_SA_NiHu_Masterprac_group13_C 121.33 102.17 105910000 33961000 6018000 25494000 2877900 4227700 33335000 624 919;920 616 2848;2849;2850;2851;2852;2853 1960;1961;1962;1963;1964;1965;1966 1961 103 7 AMDTPKPAVSDEKNINTFVETPVQK Unmodified 2758.3847 0.38474562 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 131.34 120.63 3;4 3.7944E-250 7 82219 20150910_Q1_SA_NiHu_Masterprac_group13_C 157.59 148.02 282200000 84142000 21552000 135820000 19935000 6746700 14005000 625 919;920 616 2854;2855;2856;2857;2858;2859;2860 1967;1968;1969;1970;1971;1972;1973 1968 7 AMESTESRHYPVFENPK Unmodified 2020.9313 0.93127509 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 2 1 1 1 2 97.494 90.559 3;4 0.0024904 3 61119 20150910_Q1_SA_NiHu_Masterprac_group10_B 77.726 65.834 71496000 6568000 12221000 5714600 6672400 10186000 30133000 626 352;968 617 2861;2862;2863;2864;2865;2866;2867;2868;2869 1974;1975;1976 1975 3 AMEVDIEERPK Unmodified 1315.6442 0.6442012 1645 Q9Y3C1;D6RIC3;E7ERV7;E7ESQ0;D6RGD3 NOP16 Nucleolar protein 16 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 3 1 2 2 2 95.242 86.981 2;3 9.4885E-08 5 59623 20150910_Q1_SA_NiHu_Masterprac_group15_B 108.31 71.133 10432000 2595200 0 1187000 1233400 2263200 3153200 627 1645 618 2870;2871;2872;2873;2874;2875;2876;2877;2878;2879 1977;1978;1979;1980;1981 1978 5 AMHQAQTMEGCSSPMVVK Unmodified 1990.8733 0.87330798 560 Q92879-2;Q92879-3;F8W940;Q92879;Q92879-4;G5EA30 CELF1 CUGBP Elav-like family member 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 99.209 89.617 3 0.034441 1 61343 20150910_Q1_SA_NiHu_Masterprac_group15_B 34.202 23.956 2306100 327460 0 0 0 668760 1309800 628 560 619 2880;2881;2882 1982 1982 1 AMHTPKPAVGEEK Unmodified 1393.7024 0.70238478 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 1 2 2 53.091 46.528 2;3 2.6043E-06 5 33522 20150910_Q1_SA_NiHu_Masterprac_group15_B 100.73 66.727 65185000 249670 8869400 18519000 4790300 6674200 26082000 629 919;920 620 2883;2884;2885;2886;2887;2888;2889;2890;2891;2892 1983;1984;1985;1986;1987 1985 5 AMHTPKPAVGEEKDINTFLGTPVQK Unmodified 2707.4003 0.4003361 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 131.97 116.29 4 0.035777 1 77638 20150910_Q1_SA_NiHu_Masterprac_group10_C 29.281 21.853 9780200 9780200 0 0 0 0 0 630 919;920 621 2893 1988 1988 1 AMHTPKPAVSGEK Unmodified 1351.6918 0.69182009 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 48.334 41.753 3 0.0020138 3 29511 20150910_Q1_SA_NiHu_Masterprac_group10_B 82.774 52.635 21904000 0 8511900 9453800 1842300 2096000 0 631 919;920 622 2894;2895;2896;2897 1989;1990;1991 1991 3 AMHTPKPSVGEEK Unmodified 1409.6973 0.6972994 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 1 1 1 2 54.713 46.625 3 1.527E-10 6 25745 20150910_Q1_SA_NiHu_Masterprac_group10_C 98.368 64.498 42118000 4819400 9888900 20391000 6168600 849410 0 632 919;920 623 2898;2899;2900;2901;2902;2903;2904 1992;1993;1994;1995;1996;1997 1997 6 AMKPWIQPK Unmodified 1097.6056 0.60557126 289 CON__P02663 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 1 1 92.911 87.623 2 5.7244E-19 3 60053 20150910_Q1_SA_NiHu_Masterprac_group13_B 127.46 99.253 14525000 6780700 2241900 0 5502500 0 0 + 633 289 624 2905;2906;2907;2908 1998;1999;2000 1998 3 AMLRVQPEAQAK Acetyl (Protein N-term) 1382.734 0.73401926 26 H0YNE3;Q06323;A6NJG9 PSME1 Proteasome activator complex subunit 1 yes no 1 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 2 119.67 112.16 2 0.0022731 3 80504 20150910_Q1_SA_NiHu_Masterprac_group13_C 89.301 63.6 4347500 0 0 2031000 740360 0 1576100 634 26 625 2909;2910;2911;2912 2001;2002;2003 2002 3 AMLTPKPAGGDEK Unmodified 1313.6649 0.66493664 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 3 2 61.004 54.44 2;3 0.001197 10 44647 20150910_Q1_SA_NiHu_Masterprac_group13_C 93.348 56.204 235150000 18106000 29839000 67259000 18624000 50487000 50831000 635 919;920 626 2913;2914;2915;2916;2917;2918;2919;2920;2921;2922;2923;2924;2925;2926;2927 2004;2005;2006;2007;2008;2009;2010;2011;2012;2013 2006 10 AMNLDQVSKDK Unmodified 1247.618 0.61798644 1429 Q99594;H7C4A7 TEAD3 Transcriptional enhancer factor TEF-5 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 75.919 68.458 3 0.0063361 4 47594 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.412 26.454 6833700 708140 656280 1113000 931610 1427400 1997300 636 1429 627 2928;2929;2930;2931;2932;2933 2014;2015;2016;2017 2015 4 AMNVLTEAEER Unmodified 1261.5973 0.597251 770 O95347-2;O95347 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 118.37 113.05 2 0.021161 2 73536 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.04 40.759 5648700 628250 766620 0 762560 0 3491300 637 770 628 2934;2935;2936;2937 2018;2019 2019 2 AMPVTKPITVTK Unmodified 1284.7475 0.74754405 1402 Q96KM6 ZNF512B Zinc finger protein 512B yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 94.141 86.262 3 7.0887E-64 5 59233 20150910_Q1_SA_NiHu_Masterprac_group15_B 139.76 125.99 67043000 6198800 9336200 9527600 8893300 14631000 18456000 638 1402 629 2938;2939;2940;2941;2942;2943 2020;2021;2022;2023;2024 2022 5 AMSTLVPQGGPVLCR Unmodified 1584.8116 0.81161765 754 O94776;Q68DB1 MTA2;DKFZp686F2281 Metastasis-associated protein MTA2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.98 132.38 2 1.1157E-08 2 85966 20150910_Q1_SA_NiHu_Masterprac_group10_B 98.942 53.735 70417000 0 70417000 0 0 0 0 639 754 630 2944 2025;2026 2025 2 AMTILLEEAK Unmodified 1117.6053 0.60529649 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 136.2 133.72 2 1.1689E-29 2 86280 20150910_Q1_SA_NiHu_Masterprac_group10_B 130.98 89.556 51865000 0 0 0 51152000 0 712610 640 352;968 631 2945;2946;2947 2027;2028 2028 2 AMTILLEEAKAK Unmodified 1316.7374 0.7373733 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 2 131.05 120.2 2;3 1.7141E-290 9 82897 20150910_Q1_SA_NiHu_Masterprac_group13_C 194.48 150.98 274370000 33210000 14392000 99966000 7900700 29249000 89650000 641 352;968 632 2948;2949;2950;2951;2952;2953;2954;2955;2956 2029;2030;2031;2032;2033;2034;2035;2036;2037 2030 9 AMTILLEEAKAKDSGK Unmodified 1703.9128 0.91277148 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 1 2 2 1 2 122.32 112.18 3;4 9.3559E-64 9 73989 20150910_Q1_SA_NiHu_Masterprac_group10_C 128.71 110.39 142610000 26280000 3229000 66434000 30054000 1788200 14821000 642 352;968 633 2957;2958;2959;2960;2961;2962;2963;2964;2965;2966;2967 2038;2039;2040;2041;2042;2043;2044;2045;2046 2046 9 AMTILLEEAKAKDSGK Oxidation (M) 1719.9077 0.9076861 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 1 2 By MS/MS By matching By matching By matching By matching By matching 2 1 1 90.501 85.262 3 0.040677 1 58264 20150910_Q1_SA_NiHu_Masterprac_group10_C 52.42 42.067 7082800 4439500 703810 0 1939500 0 0 643 352;968 633 2968;2969;2970;2971 2047 2047 1 AMVASGSELGK Unmodified 1048.5223 0.52229515 393 G3V213;F8VZG5;P54819-3;E7EWH4;P54819-5;P54819-2;F8W1A4;P54819;P54819-4;P54819-6 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 74.457 65.483 2 0.014835 1 45724 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.265 18.541 2655500 0 428010 228810 0 932550 1066200 644 393 634 2972;2973;2974;2975 2048 2048 1 AMVEYEIDLQKMPLGK Unmodified 1863.9474 0.94744243 815 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 133.62 133.01 3 0.0046382 1 86753 20150910_Q1_SA_NiHu_Masterprac_group10_B 51.004 12.843 45869000 0 45869000 0 0 0 0 645 815 635 2976 2049 2049 1 ANAEEMTKYHSDDYIK Unmodified 1913.8465 0.84654241 1086 Q13547;Q5TEE2 HDAC1 Histone deacetylase 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 2 1 1 1 2 92.45 86.498 3;4 2.0796E-11 2 59244 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.203 66.978 18981000 0 1544000 2440400 325350 256600 14414000 646 1086 636 2977;2978;2979;2980;2981;2982;2983 2050;2051 2050 2 ANASNSPSSLRLLNEPQK Unmodified 1924.9967 0.99665254 1192 Q5T5X7 BEND3 BEN domain-containing protein 3 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 113.98 105.94 3 0.0016599 6 69721 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.788 47.794 10854000 0 1986100 2133400 930410 2184800 3619800 647 1192 637 2984;2985;2986;2987;2988 2052;2053;2054;2055;2056;2057 2056 6 ANELLQR Unmodified 842.46102 0.46101552 100 E9PF10;O75694-2;B4DLT2;O75694 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 66.006 57.614 2 0.0011368 3 41113 20150910_Q1_SA_NiHu_Masterprac_group10_B 113.89 21.989 7821900 421930 2745700 3283700 0 505500 865090 648 100 638 2989;2990;2991;2992;2993 2058;2059;2060 2060 3 ANELPQPPVPEPANAGK Unmodified 1727.8842 0.88424855 90 P78347-2;P78347-4;P78347-3;B4DH52;P78347 GTF2I General transcription factor II-I yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 131.06 117.49 2 0.00019204 2 85267 20150910_Q1_SA_NiHu_Masterprac_group15_B 85.563 66.629 14933000 0 0 3724100 0 1779000 9429500 649 90 639 2994;2995;2996 2061;2062 2061 2 ANGTSALTAQNGK Unmodified 1231.6157 0.61567826 1120 Q14978;Q14978-3;Q14978-2 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 47.155 38.782 2 0.036361 1 31429 20150910_Q1_SA_NiHu_Masterprac_group13_C 42.469 16.489 1487000 0 930850 437790 0 118360 0 650 1120 640 2997;2998;2999 2063 2063 1 ANGTTVHVGIHPSK Unmodified 1416.7474 0.74736113 343 E5RIT6;Q9UNX3;P61254 RPL26L1;RPL26 60S ribosomal protein L26-like 1;60S ribosomal protein L26 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 60.654 54.161 3 0.0019486 2 38603 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.244 43.184 4959900 571680 1069800 0 0 1606100 1712300 651 343 641 3000;3001;3002;3003 2064;2065 2064 2 ANILGLAAGQR Unmodified 1082.6196 0.61964142 1115 Q14807;B7Z265;H3BRB3 KIF22 Kinesin-like protein KIF22 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 131.39 128.6 2 3.0955E-05 2 86866 20150910_Q1_SA_NiHu_Masterprac_group15_B 102.95 70.224 100750000 0 69407000 0 0 0 31342000 652 1115 642 3004;3005 2066;2067 2066 2 ANILGLAAGQRCGAS Unmodified 1457.7409 0.74089555 1115 Q14807;B7Z265;H3BRB3 KIF22 Kinesin-like protein KIF22 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 130.43 129.83 2 0.0013808 1 83206 20150910_Q1_SA_NiHu_Masterprac_group10_B 72.662 57.075 5618500 0 5618500 0 0 0 0 653 1115 643 3006 2068 2068 1 ANLEESFPRGGTRK Acetyl (Protein N-term) 1602.8114 0.81141795 1112 Q14690;F5H7X0 PDCD11 Protein RRP5 homolog yes no 1 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 108.54 99.712 3 0.014391 3 73204 20150910_Q1_SA_NiHu_Masterprac_group13_C 48.044 20.372 35140000 8002900 4763100 4029700 3107900 7786600 7449800 654 1112 644 3007;3008;3009;3010;3011;3012 2069;2070;2071 2069 3 ANLENKLLGK Unmodified 1098.6397 0.63970816 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 101.09 92.927 2 3.1638E-138 4 62439 20150910_Q1_SA_NiHu_Masterprac_group10_B 166.86 85.947 22788000 1700700 6334700 4876500 1254300 2136300 6485100 655 1611 645 3013;3014;3015;3016;3017;3018 2072;2073;2074;2075 2074 4 ANLQQAIVTPLKPVDNTYYK Unmodified 2275.2212 0.22123275 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 133.42 131.36 2;3 1.3259E-172 3 86336 20150910_Q1_SA_NiHu_Masterprac_group10_B 154.52 146.24 325960000 0 145930000 0 0 0 180030000 656 1611 646 3019;3020;3021 2076;2077;2078 2077 3 ANLQQAIVTPLKPVDNTYYKEAEK Unmodified 2732.4385 0.43849575 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 2 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 132.87 127.44 4 0.003419 2 85758 20150910_Q1_SA_NiHu_Masterprac_group10_B 46.595 29.381 51774000 15225000 8146200 0 28403000 0 0 657 1611 647 3022;3023;3024 2079;2080 2079 2 ANMLQEYSK Unmodified 1082.5066 0.50664508 1626 Q9UQR1 ZNF148 Zinc finger protein 148 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 96.745 89.775 2 0.014686 2 60817 20150910_Q1_SA_NiHu_Masterprac_group10_B 77.533 42.238 3883700 0 1262100 0 0 792440 1829200 658 1626 648 3025;3026;3027 2081;2082 2082 2 ANNSPALTGNSQPQHQAAAAAAQQQQQCGGGGATKPAVSGK Unmodified 3956.8896 0.88958507 1203 Q5VTL8;Q5VTL8-2 PRPF38B Pre-mRNA-splicing factor 38B yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 93.048 85.508 4 0.0027656 2 58722 20150910_Q1_SA_NiHu_Masterprac_group15_B 18.614 12.388 21907000 0 8964500 5365300 1465100 1097300 5014900 659 1203 649 3028;3029;3030;3031;3032 2083;2084 2084 2 ANNSPALTGNSQPQHQAAAAAAQQQQQCGGGGATKPAVSGK Acetyl (Protein N-term) 3998.9001 0.90014975 1203 Q5VTL8;Q5VTL8-2 PRPF38B Pre-mRNA-splicing factor 38B yes no 1 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 97.235 96.331 4 1.3776E-22 1 64466 20150910_Q1_SA_NiHu_Masterprac_group10_B 43.602 35.258 51020000 0 37888000 0 13131000 0 0 660 1203 649 3033;3034 2085 2085 1 ANQVNGNAVQLK Acetyl (Protein N-term) 1296.6786 0.67861287 715 O43390;O43390-2;Q2L7G6 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 1 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 110.01 99.434 2 0.00097347 3 66163 20150910_Q1_SA_NiHu_Masterprac_group10_B 84.507 64.901 6426900 591330 2145100 734470 0 977300 1978600 661 715 650 3035;3036;3037;3038;3039 2086;2087;2088 2088 3 ANRWFGVAPPK Unmodified 1241.6669 0.66692597 1283 Q8IWZ8;B4DVK3;Q8IWZ8-2 SUGP1 SURP and G-patch domain-containing protein 1 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 120.14 114.82 3 4.3516E-05 4 75226 20150910_Q1_SA_NiHu_Masterprac_group10_C 101.38 73.204 8578200 2408600 1796400 0 1414100 0 2959200 662 1283 651 3040;3041;3042;3043 2089;2090;2091;2092 2092 4 ANSEASSSEGQSSLSSLEK Unmodified 1896.8549 0.85485849 1199 Q5TGY3 AHDC1 AT-hook DNA-binding motif-containing protein 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 89.046 87.09 2 0.012144 1 59683 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.384 25.455 666000 0 0 0 0 0 666000 663 1199 652 3044 2093 2093 1 APAMQPAEIQFAQR Unmodified 1556.7769 0.7769467 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 131.89 122.39 2 0 6 86778 20150910_Q1_SA_NiHu_Masterprac_group15_B 228.62 181.38 293200000 36322000 52215000 35533000 26356000 65169000 77608000 664 1111 653 3045;3046;3047;3048;3049;3050 2094;2095;2096;2097;2098;2099 2096 6 APAMQPAEIQFAQR Oxidation (M) 1572.7719 0.77186132 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 1 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 115.12 105.42 2 0.0047932 1 72182 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.373 54.939 5205200 0 0 950660 636360 1205500 2412700 665 1111 653 3051;3052;3053;3054 2100 2100 134 1 APAMQPAEIQFAQRLASSEK Oxidation (M) 2188.0947 0.094652027 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 1 1 By matching By matching By matching By MS/MS By matching By matching 1 133.09 133.09 3 4.4856E-37 1 86120 20150910_Q1_SA_NiHu_Masterprac_group13_B 108.14 84.303 11874000 0 0 0 11874000 0 0 666 1111 654 3055 2101 2101 134 1 APILIATDVASR Unmodified 1225.703 0.7030367 1361;629;853 P17844;E7ETL9;Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 132.19 131.89 2 0.038832 1 85067 20150910_Q1_SA_NiHu_Masterprac_group10_B 44.829 19.634 9307100 0 7429900 0 1877200 0 0 667 853;1361;629 655 3056;3057 2102 2102 1 APLKSVGPDFGK Unmodified 1214.6659 0.66592292 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 95.163 88.986 3 0.0027753 1 60596 20150910_Q1_SA_NiHu_Masterprac_group13_B 73.435 48.197 3887600 403650 554520 0 586650 1013700 1329000 668 1012 656 3058;3059;3060;3061;3062 2103 2103 1 APSTYGGGLSVSSSR Unmodified 1424.6896 0.68957148 286 P02533;CON__P02533 KRT14 Keratin, type I cytoskeletal 14 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 93.251 85.671 2 0.00057463 2 65014 20150910_Q1_SA_NiHu_Masterprac_group13_C 82.578 61.921 5260600 0 695450 1000200 1286700 1017200 1261100 + 669 286 657 3063;3064;3065;3066;3067 2104;2105 2105 2 APSVPAAEPEYPKGIR Unmodified 1680.8835 0.88352026 393 G3V213;F8VZG5;P54819-3;E7EWH4;P54819-5;P54819-2;F8W1A4;P54819;F8VPP1;F8VY04 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 123.79 106.65 3 0.033934 1 75568 20150910_Q1_SA_NiHu_Masterprac_group15_C 38.116 25.911 1632200 0 0 0 0 1632200 0 670 393 658 3068 2106 2106 1 AQAAAPASVPAQAPK Unmodified 1376.7412 0.74121312 930 P47914 RPL29 60S ribosomal protein L29 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 79.985 72.44 2 1.1151E-08 6 50026 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.943 65.354 83438000 16179000 13008000 10828000 8927900 18064000 16430000 671 930 659 3069;3070;3071;3072;3073;3074 2107;2108;2109;2110;2111;2112 2109 6 AQALEDLAGFK Unmodified 1161.603 0.60298831 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 133.27 132.97 2 9.2367E-08 3 86190 20150910_Q1_SA_NiHu_Masterprac_group10_B 108.35 80.171 177630000 0 109640000 0 67985000 0 0 672 919;920 660 3075;3076 2113;2114;2115 2115 3 AQAVSEEEEEEEGK Unmodified 1562.6584 0.65839051 588 G3V529;Q9GZR7;F5H4J5;Q4V9L5 DDX24 ATP-dependent RNA helicase DDX24 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 52.048 46.192 2 1.1354E-05 5 32319 20150910_Q1_SA_NiHu_Masterprac_group13_B 94.532 94.532 23502000 0 3104500 4095500 2998200 6332600 6971000 673 588 661 3077;3078;3079;3080;3081 2116;2117;2118;2119;2120 2116 5 AQAVSEEEEEEEGKSSSPKK Unmodified 2176.9972 0.99716563 588 G3V529;Q9GZR7;F5H4J5;Q4V9L5 DDX24 ATP-dependent RNA helicase DDX24 yes no 0 0 2 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 1 1 1 1 1 48.561 42.871 3;4 8.8966E-11 5 35932 20150910_Q1_SA_NiHu_Masterprac_group15_C 89.374 47.462 12097000 1829700 991750 2710000 2784200 2684600 1096900 674 588 662 3082;3083;3084;3085;3086;3087;3088 2121;2122;2123;2124;2125 2122 5 AQDQGEKENPMR Acetyl (Protein N-term) 1443.6412 0.64124108 998 P62913 RPL11 60S ribosomal protein L11 yes yes 1 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 59.937 54.74 2 0.01541 1 44247 20150910_Q1_SA_NiHu_Masterprac_group15_C 57.106 35.756 2538400 0 0 0 483610 1279900 774890 675 998 663 3089;3090;3091 2126 2126 1 AQEEYEQIQAK Unmodified 1335.6307 0.63065962 1571 Q9P031 CCDC59 Thyroid transcription factor 1-associated protein 26 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 74.017 66.498 2 1.5856E-29 10 51785 20150910_Q1_SA_NiHu_Masterprac_group15_C 125.23 100.72 23658000 5383000 3115400 3622600 2690600 4645700 4200800 676 1571 664 3092;3093;3094;3095;3096;3097;3098 2127;2128;2129;2130;2131;2132;2133;2134;2135;2136 2133 10 AQELGHSQSALASAQR Unmodified 1652.823 0.82304527 1121 Q14980-2;Q14980;F5H2L0;H0YFY6 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 70.026 62.621 3 4.3466E-18 7 43705 20150910_Q1_SA_NiHu_Masterprac_group15_B 102.39 84.432 31659000 4777100 5582200 2805000 2076900 5066900 11351000 677 1121 665 3099;3100;3101;3102;3103;3104;3105 2137;2138;2139;2140;2141;2142;2143 2140 7 AQEPESGLSEETQVK Unmodified 1630.7686 0.76860967 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 2 89.112 83.002 2 9.8992E-85 8 57004 20150910_Q1_SA_NiHu_Masterprac_group15_B 148.18 148.18 34660000 5072400 5945200 2840400 3003800 6560500 11237000 678 1012 666 3106;3107;3108;3109;3110;3111;3112;3113;3114 2144;2145;2146;2147;2148;2149;2150;2151 2147 6 AQETEAAPSQAPADEPEPESAAAQSQENQDTRPKVK Unmodified 3804.7674 0.76744705 1614 Q9UNF1;Q9UNF1-2;H7BXW3;Q5H907;Q5H909 MAGED2 Melanoma-associated antigen D2 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 98.85 86.952 4 7.1687E-05 1 59743 20150910_Q1_SA_NiHu_Masterprac_group15_B 30.007 26.237 4841400 0 0 1592900 0 1081300 2167200 679 1614 667 3115;3116;3117 2152 2152 1 AQGQESDSSETSVRGPR Unmodified 1789.8191 0.81908211 464 Q03164-2;Q03164;E9PQG7;E9PR05;H3BLZ0;H7C5W4 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 45.902 38.595 3 0.021561 2 27165 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.629 39.629 3142400 474380 0 274190 0 1176700 1217200 680 464 668 3118;3119;3120;3121 2153;2154 2153 2 AQHEDQVEQYK Unmodified 1373.6212 0.62115757 783 P02545;P02545-3;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q3BDU5;Q5TCJ4;Q5TCI8;H0YAB0 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 44.674 38.387 3 0.0062398 4 27290 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.515 45.503 5861900 490340 981930 1456800 0 528910 2403900 681 783 669 3122;3123;3124;3125;3126 2155;2156;2157;2158 2156 4 AQHEDQVEQYKK Unmodified 1501.7161 0.71612058 783 P02545;P02545-3;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q3BDU5;Q5TCJ4;Q5TCI8;H0YAB0 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 30.635 29.631 3 0.0041535 1 20266 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.03 33.348 2000900 0 1114100 0 886850 0 0 682 783 670 3127;3128 2159 2159 1 AQIHDLVLVGGSTRIPK Unmodified 1803.0367 0.036666863 619 P08107;H0YG33;F8VZJ4;F5H1D3;F5GZ62;Q5SP16;E7EP94 HSPA1A Heat shock 70 kDa protein 1A/1B yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 2 131.18 130.57 3;4 0.0022332 2 84024 20150910_Q1_SA_NiHu_Masterprac_group10_B 68.329 54.353 14475000 0 14475000 0 0 0 0 683 619 671 3129;3130 2160;2161 2160 2 AQKTPYIVLSGSGK Unmodified 1447.8035 0.80347903 713 O43290;G3V1T2 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 2 1 106.86 97.085 2;3 0.0011288 3 64628 20150910_Q1_SA_NiHu_Masterprac_group10_B 72.523 49.431 22971000 4406800 5287000 666520 1367700 6935000 4307700 684 713 672 3131;3132;3133;3134;3135;3136;3137 2162;2163;2164 2164 3 AQLGGPEAAKSDETAAK Unmodified 1642.8162 0.81622856 96 B4DL87;P04792;C9J3N8 HSPB1 Heat shock protein beta-1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 60.911 51.704 3 0.025468 1 42318 20150910_Q1_SA_NiHu_Masterprac_group15_C 38.808 21.668 1317300 0 0 393060 259890 664320 0 685 96 673 3138;3139;3140 2165 2165 1 AQLMNCHVSAGTRHK Unmodified 1708.825 0.8249763 1417 Q96RE7 NACC1 Nucleus accumbens-associated protein 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 48.769 43.654 3 0.0085361 1 31157 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.527 35.426 1603900 0 320580 398950 0 0 884330 686 1417 674 3141;3142;3143 2166 2166 1 AQLSSSLQEGVMQK Unmodified 1504.7555 0.75554256 779 O96028-5;O96028-3;O96028;O96028-6;D6R9V2;D6RIS1;O96028-7 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 117.99 108.65 2 0.0011147 5 74330 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.279 52.447 17638000 2024300 3737500 2341800 716310 1111500 7706300 687 779 675 3144;3145;3146;3147;3148;3149 2167;2168;2169;2170;2171 2169 5 AQLYTTNTVKTDLPPPSSESEQIDLTEEQK Unmodified 3361.6413 0.64129047 965 P54132;H0YNU5;H0YLV8 BLM Bloom syndrome protein yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.1 131.49 3 0.030784 1 84983 20150910_Q1_SA_NiHu_Masterprac_group10_B 24.866 13.822 19284000 0 19284000 0 0 0 0 688 965 676 3150 2172 2172 1 AQMEFLFRK Acetyl (Protein N-term);Oxidation (M) 1226.6118 0.61177885 645 H3BRQ1 KIFC3 yes yes 1 1 1 By matching By matching By matching By matching By matching By MS/MS 1 93.151 90.994 2 0.033887 1 62194 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.427 9.3925 0 0 0 0 0 0 0 689 645 677 3151 2173 2173 66 1 AQNEATSTPHRIR Unmodified 1479.7542 0.75423743 1080 Q13415 ORC1 Origin recognition complex subunit 1 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 35.31 30.857 3 0.0011699 1 24794 20150910_Q1_SA_NiHu_Masterprac_group13_C 77.062 37.332 9219000 0 1934000 5190700 658870 449630 985760 690 1080 678 3152;3153;3154;3155;3156 2174 2174 1 AQNTWGCGNSLR Unmodified 1362.6099 0.60988137 783 P02545;P02545-3;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 85.572 80.333 2 0.0017963 2 55107 20150910_Q1_SA_NiHu_Masterprac_group10_B 78.964 66.007 5747200 0 2640900 784730 718110 0 1603500 691 783 679 3157;3158;3159;3160 2175;2176 2176 2 AQPAQPADEPAEK Unmodified 1350.6416 0.64155866 876 P25786;P25786-2;F5GX11 PSMA1 Proteasome subunit alpha type-1 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 46.254 40.288 2 0.021532 2 28534 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.621 28.522 3672300 0 0 1142300 333590 898970 1297400 692 876 680 3161;3162;3163;3164 2177;2178 2178 2 AQPAQPADEPAEKADEPMEH Unmodified 2159.943 0.94296199 876 P25786;P25786-2;F5GX11 PSMA1 Proteasome subunit alpha type-1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 80.916 73.371 3 2.4521E-06 7 56168 20150910_Q1_SA_NiHu_Masterprac_group15_C 83.252 58.871 22939000 2134100 3453200 5484600 2788800 4128300 4949900 693 876 681 3165;3166;3167;3168;3169;3170 2179;2180;2181;2182;2183;2184;2185 2183 7 AQPLEDLAGFTELSETSGHTQESLTAGK Unmodified 2916.3989 0.39887536 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 134.89 116.9 3 1.1348E-26 1 86085 20150910_Q1_SA_NiHu_Masterprac_group13_C 81.94 68.788 0 0 0 0 0 0 0 694 919;920 682 3171 2186 2186 1 AQPLEDLAGLK Unmodified 1153.6343 0.63428844 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 133.32 124.1 2 0.010566 2 86264 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.224 31.184 305560000 0 281890000 0 0 23665000 0 695 919;920 683 3172;3173 2187;2188 2188 2 AQPSGPSQPHVCGFCGK Unmodified 1812.8036 0.80357216 1408 Q96MX3 ZNF48 Zinc finger protein 48 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 90.465 82.77 3 0.0034172 4 56760 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.899 36.981 17310000 3791100 1775800 1497400 2613100 3446700 4185800 696 1408 684 3174;3175;3176;3177;3178;3179 2189;2190;2191;2192 2190 4 AQPTPSSSATQSKPTPVKPNYALK Unmodified 2497.3177 0.31765233 983 P61964 WDR5 WD repeat-containing protein 5 yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 92.98 85.151 4 0.00031666 2 58410 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.008 34.428 35977000 4679400 5154800 6939400 2685300 8054000 8464400 697 983 685 3180;3181;3182;3183;3184;3185 2193;2194 2194 2 AQPVPHYGVPFKPQIPEAR Unmodified 2130.1374 0.13744354 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 132.12 122.62 3;4 1.3432E-81 11 87147 20150910_Q1_SA_NiHu_Masterprac_group15_B 127.32 110.35 1108100000 151130000 78199000 420790000 119120000 41465000 297350000 698 1611 686 3186;3187;3188;3189;3190;3191;3192;3193;3194;3195;3196;3197 2195;2196;2197;2198;2199;2200;2201;2202;2203;2204;2205 2199 11 AQQAPEGQPRLDQGSGASAEDAAVQEER Unmodified 2894.3391 0.33906907 1413 Q96Q06-2;Q96Q06 PLIN4 Perilipin-4 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 96.307 94.499 3 1.1251E-23 1 63331 20150910_Q1_SA_NiHu_Masterprac_group10_B 81.974 73.298 1022400 0 1022400 0 0 0 0 699 1413 687 3198 2206 2206 1 AQQLEEARLQEEEQK Unmodified 1827.8963 0.8962698 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 2 2 82.634 75.804 2;3 0.0025646 5 57437 20150910_Q1_SA_NiHu_Masterprac_group15_C 61.167 41.881 120080000 10789000 27386000 0 11682000 17793000 52435000 700 1611 688 3199;3200;3201;3202;3203;3204;3205;3206 2207;2208;2209;2210;2211 2210 5 AQQQEEQGSVNDVKEEEK Unmodified 2073.9451 0.94507048 1651 Q9Y4W2-3;Q9Y4W2-2;Q9Y4W2 LAS1L Ribosomal biogenesis protein LAS1L yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 57.505 50.376 3 0.0016293 3 35733 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.246 50.17 19299000 4493000 0 4095100 4766800 137530 5806200 701 1651 689 3207;3208;3209;3210;3211 2212;2213;2214 2213 3 AQRAFPNPYADYNK Acetyl (Protein N-term) 1695.8005 0.80051892 441 E9PHS0;O43813;F8WDS9 LANCL1 LanC-like protein 1 yes no 1 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 131.68 129.2 2 5.6179E-235 3 84104 20150910_Q1_SA_NiHu_Masterprac_group10_B 168.67 126.93 14095000 0 0 0 3243900 0 10851000 702 441 690 3212;3213;3214 2215;2216;2217 2217 3 AQRELGELIPLRQK Unmodified 1649.9577 0.95768826 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;H0YH75 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 129.62 124.66 4 0.022122 1 84309 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.305 27.234 20902000 0 0 0 0 0 20902000 703 1121 691 3215 2218 2218 1 AQRIEYDCELVPR Unmodified 1647.8039 0.80388973 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 120.78 113.02 3 5.4751E-09 7 75024 20150910_Q1_SA_NiHu_Masterprac_group10_C 101.45 82.209 69622000 29289000 15435000 0 9574500 2663500 12660000 704 1575 692 3216;3217;3218;3219;3220 2219;2220;2221;2222;2223;2224;2225 2225 7 AQRIEYDCELVPRR Unmodified 1803.905 0.90500076 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 104.48 99.006 4 0.013144 2 65475 20150910_Q1_SA_NiHu_Masterprac_group10_B 47.429 47.429 8073300 0 3543100 0 565760 1458400 2506100 705 1575 693 3221;3222;3223;3224 2226;2227 2227 2 AQSAGTVRSAAPPQEK Unmodified 1596.822 0.82198264 375 G5E9D3;P20810-5;E7ESM9;P20810-7;P20810-6;B7Z468;F8W7E0;H0Y7F0;P20810-3;E9PDE4;E7ES10;P20810-4;E9PCH5;G5E946;B7Z574;P20810-2;P20810;H0Y9H6;E7EVY3;H0YA91 CAST Calpastatin yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 46.163 42.553 3 0.0039447 1 30264 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.372 23.157 2496300 1218600 0 0 0 0 1277700 706 375 694 3225;3226 2228 2228 1 AQSGSDSSPEPKAPAPR Unmodified 1680.8067 0.80672651 1623 Q9UQ35;F5GWZ7;Q9UQ35-2;I3L2L6 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 53.855 46.318 3 0.0021983 2 38451 20150910_Q1_SA_NiHu_Masterprac_group15_C 54.768 42.426 1887300 654060 570300 0 0 662950 0 707 1623 695 3227;3228;3229 2229;2230 2230 2 AQSLTTCEVCGACFETRK Unmodified 2116.934 0.93399398 212 B7ZM82;B3KVH1;O95785 WIZ Protein Wiz yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 117.41 106.43 3 0.00091101 5 72787 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.691 39.21 9326600 1441600 1734100 1111500 0 2216800 2822600 708 212 696 3230;3231;3232;3233;3234 2231;2232;2233;2234;2235 2233 5 AQSLVISPPAPSPR Unmodified 1418.7882 0.78816332 919;920 P46013;F5H4V4;P46013-2;E7EN66 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1 129.92 120.49 2 4.8344E-86 7 82597 20150910_Q1_SA_NiHu_Masterprac_group13_C 139.64 103.64 153450000 38926000 11185000 23457000 3243800 10479000 66161000 709 919;920 697 3235;3236;3237;3238;3239;3240;3241;3242 2236;2237;2238;2239;2240;2241;2242 2237 7 AQSLVISPPAPSPRKTPVASDQR Unmodified 2401.3078 0.30775635 919;920 P46013;F5H4V4;P46013-2;E7EN66 MKI67 Antigen KI-67 no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 117.25 107.9 4 0.026551 1 73973 20150910_Q1_SA_NiHu_Masterprac_group15_B 32.576 32.576 4204700 1613200 533610 0 0 442280 1615600 710 919;920 698 3243;3244;3245;3246 2243 2243 1 AQSSGPEHPGPESSLPSGALSK Unmodified 2119.0182 0.018175845 1502 Q9H8N7 ZNF395 Zinc finger protein 395 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 99.662 96.703 3 0.0054924 1 66025 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.618 22.827 3612300 0 0 0 0 0 3612300 711 1502 699 3247 2244 2244 1 AQVFSCPACR Unmodified 1194.5274 0.5273973 175;1411 B5ME40;F5GXG0;Q96T88;Q96PU4 UHRF1;UHRF2 E3 ubiquitin-protein ligase UHRF1;E3 ubiquitin-protein ligase UHRF2 no no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 86.148 75.458 2 0.012906 1 52300 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.347 46.183 4525600 138390 0 892350 0 330090 3164800 712 175;1411 700 3248;3249;3250;3251 2245 2245 1 AQYEDIAQK Unmodified 1064.5138 0.51383895 789 P04264 KRT1 Keratin, type II cytoskeletal 1 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 64.898 58.039 2 0.0021058 4 41078 20150910_Q1_SA_NiHu_Masterprac_group15_B 106.6 73.707 37022000 0 6352000 18468000 3290700 2067100 6844700 + 713 789 701 3252;3253;3254;3255;3256 2246;2247;2248;2249 2247 4 AQYEDIAQKSK Unmodified 1279.6408 0.64083038 789 P04264 KRT1 Keratin, type II cytoskeletal 1 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 56.137 49.862 2;3 1.0233E-12 7 35083 20150910_Q1_SA_NiHu_Masterprac_group13_B 114.71 96.52 47598000 1932100 12198000 17725000 5063800 4050200 6628700 + 714 789 702 3257;3258;3259;3260;3261;3262;3263;3264;3265;3266;3267;3268 2250;2251;2252;2253;2254;2255;2256 2250 7 AQYEEIAQR Unmodified 1106.5356 0.53563702 302;287;788;300 P35908;CON__P35908;Q01546;P02538;CON__P02538;E7EUE8;P04259;CON__P04259;F5H6G5;F8VS64;P19013;CON__P19013;F5H8K9 KRT2;KRT76;KRT6A;KRT6B;KRT4 Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 4 no no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 71.867 64.687 2 0.021779 3 45140 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.847 33.182 15099000 0 3531800 5494800 1846000 1244300 2981700 + 715 302;287;788;300 703 3269;3270;3271;3272;3273 2257;2258;2259 2258 3 AQYEEIAQRSK Unmodified 1321.6626 0.66262845 302;300 P35908;CON__P35908;Q01546;F8VS64;P19013;CON__P19013;F5H8K9 KRT2;KRT76;KRT4 Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 4 no no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 63.924 55.225 3 0.0052125 2 39455 20150910_Q1_SA_NiHu_Masterprac_group10_B 73.666 40.667 3235300 0 2072000 1163300 0 0 0 + 716 302;300 704 3274;3275 2260;2261 2261 2 ARAETEELIRER Unmodified 1471.7743 0.77430417 408 H3BT29;H3BUJ5;P29590-14;P29590-10;E9PBR7;P29590-4;H3BT57;P29590-12;P29590-2;P29590-5;P29590-9;P29590-13;P29590-3;P29590-8;P29590-11;H2N333;P29590 PML Protein PML yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 65.892 64.738 3 0.038952 1 45192 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.936 36.351 1230000 0 0 0 0 0 1230000 717 408 705 3276 2262 2262 1 ARALEDLVDFK Unmodified 1275.6823 0.68230126 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 133.2 132.6 2 7.9937E-05 1 86196 20150910_Q1_SA_NiHu_Masterprac_group10_B 102.97 51.718 24264000 0 24264000 0 0 0 0 718 919;920 706 3277 2263 2263 1 ARDDGQADSEVLGECAR Unmodified 1847.8068 0.80680286 1318 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 85.924 73.393 3 0.0088044 1 57566 20150910_Q1_SA_NiHu_Masterprac_group13_C 44.391 29.462 1071900 277130 0 794780 0 0 0 719 1318 707 3278;3279 2264 2264 1 ARDDGQADSEVLGECARR Unmodified 2003.9079 0.90791389 1318 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 74.54 67.112 4 0.00049306 5 53933 20150910_Q1_SA_NiHu_Masterprac_group13_C 81.346 59.987 8914400 763980 1231000 1710800 1129500 1727300 2351900 720 1318 708 3280;3281;3282;3283;3284;3285 2265;2266;2267;2268;2269 2266 5 ARDINAVLIDMER Unmodified 1514.7875 0.78751139 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 133.38 130.59 2 0.0086424 2 88709 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.754 46.329 105870000 0 18751000 0 0 0 87122000 721 352;968 709 3286;3287 2270;2271 2270 1 ARDYDAMGSQTKFVQCPDGELQK Unmodified 2643.2057 0.20573539 1627 Q9Y230;B3KQ59 RUVBL2 RuvB-like 2 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 124.07 113.94 4 1.649E-08 1 75347 20150910_Q1_SA_NiHu_Masterprac_group10_C 68.291 54.186 4004900 3170800 0 0 0 0 834040 722 1627 710 3288;3289 2272 2272 1 ARHVFLTGPPGVGK Acetyl (Protein N-term) 1476.8201 0.82013215 1444 Q9BSD7;Q5TDF0 NTPCR Cancer-related nucleoside-triphosphatase yes no 1 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 124.75 117.12 3 3.2762E-28 2 81810 20150910_Q1_SA_NiHu_Masterprac_group13_C 113.43 98.642 36901000 0 2997400 21233000 3845500 4552200 4272200 723 1444 711 3290;3291;3292;3293;3294;3295 2273;2274 2273 2 ARKAMEVEIEDLHLQIDDIAK Unmodified 2436.2683 0.2682593 465 E9PQN8;Q92614-5;F8W6Y3;Q92614-2;Q92614-3;F8W6U1;Q92614-4;Q92614 MYO18A Unconventional myosin-XVIIIa yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 130.54 125.57 3 0.0063837 1 85266 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.117 24.131 18858000 0 0 0 0 0 18858000 724 465 712 3296 2275 2275 1 ARMGMRMK 3 Oxidation (M) 1027.4725 0.47252496 455 E9PKP7 UBTF yes yes 0 3 2 By matching By matching By MS/MS By matching By matching By matching 1 60.847 47.864 2 0.032355 1 39373 20150910_Q1_SA_NiHu_Masterprac_group13_C 42.396 21.559 0 0 0 0 0 0 0 725 455 713 3297 2276 2276 51;52;53 1 ARPAADPTGAPAAEAAQPQAQVAAHPEQTAPWTEK Unmodified 3533.7288 0.72875754 1413 Q96Q06-2;Q96Q06 PLIN4 Perilipin-4 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 127.82 120.73 4 2.4084E-12 6 83802 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.405 36.474 12993000 4962000 2099200 0 0 0 5931600 726 1413 714 3298;3299;3300 2277;2278;2279;2280;2281;2282 2278 6 ARPAADPTGAPAAEAAQPQAQVAAHPEQTAPWTEKELQPSEK Unmodified 4345.1363 0.13634051 1413 Q96Q06-2;Q96Q06 PLIN4 Perilipin-4 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 2 130.31 127 4;5 1.1117E-42 3 85231 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.649 55.056 25701000 0 0 0 8330700 0 17370000 727 1413 715 3301;3302;3303 2283;2284;2285 2285 3 ARPNTVISQEPFVPK Unmodified 1681.9152 0.91515474 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 2 2 131.08 113.65 2;3 1.2944E-42 3 79955 20150910_Q1_SA_NiHu_Masterprac_group15_C 122.12 94.852 68090000 2175200 0 19457000 0 46458000 0 728 1611 716 3304;3305;3306;3307;3308 2286;2287;2288 2286 3 ARPSQFPEQSSSAQQNAR Unmodified 1987.946 0.94601395 686 O00139-2;D6R9M0 KIF2A Kinesin-like protein KIF2A yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1 1 62.162 55.201 3 1.87E-58 10 39215 20150910_Q1_SA_NiHu_Masterprac_group15_B 120.99 100.47 20063000 2617800 5100600 1935600 1352700 1990500 7065900 729 686 717 3309;3310;3311;3312;3313;3314;3315;3316 2289;2290;2291;2292;2293;2294;2295;2296;2297;2298 2293 10 ARPSQFPEQSSSAQQNGSVSDISPVQAAK Unmodified 3000.4537 0.45370489 403 O00139-1;E9PB70;O00139;O00139-4 KIF2A Kinesin-like protein KIF2A yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 122.77 112.96 3 2.0113E-92 6 80110 20150910_Q1_SA_NiHu_Masterprac_group13_C 113.15 78.929 22151000 5900400 2531700 9941100 0 0 3777700 730 403 718 3317;3318;3319;3320 2299;2300;2301;2302;2303;2304 2300 6 ARQAVGGAGPPNPAINGSAPR Unmodified 1957.0242 0.024204696 94 H0Y539;E9PFM5;P29353-5;P29353-3;P29353-2;P29353-7;B4DL02;P29353;P29353-6 SHC1 SHC-transforming protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 91.263 81.963 3 0.031283 1 56272 20150910_Q1_SA_NiHu_Masterprac_group15_B 33.79 24.232 3348700 0 1074900 588860 0 617600 1067400 731 94 719 3321;3322;3323;3324 2305 2305 1 ARQCEKENLGWQK Unmodified 1645.7995 0.79947306 840 P15924;P15924-2 DSP Desmoplakin yes no 0 0 2 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 55.789 51.401 4 0.0022549 4 42283 20150910_Q1_SA_NiHu_Masterprac_group13_C 64.945 64.945 4030800 0 667320 1598400 639690 0 1125400 732 840 720 3325;3326;3327;3328 2306;2307;2308;2309 2308 4 ARRILELSGSSSEDSEK Unmodified 1862.9334 0.93338358 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 73.454 72.199 4 0.022367 1 50042 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.808 24.943 986230 0 0 0 0 0 986230 733 1012 721 3329 2310 2310 1 ARSILLATDVASR Unmodified 1371.7834 0.78341229 1481 Q9H0S4;G5E955 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 115.39 111.03 3 0.025906 1 75945 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.42 46.692 0 0 0 0 0 0 0 734 1481 722 3330 2311 2311 1 ARVAEPGAEATSSTGEESGSEHPPAVPMHNK Unmodified 3129.4422 0.44215393 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 3 2 91.729 83.731 4;5 5.6251E-07 7 57727 20150910_Q1_SA_NiHu_Masterprac_group10_C 46.781 40.347 40277000 5805500 0 3100300 6716400 13428000 11227000 735 1111 723 3331;3332;3333;3334;3335;3336;3337;3338;3339;3340;3341 2312;2313;2314;2315;2316;2317;2318 2317 3 ASAELQTLLMNQLTVK Unmodified 1758.955 0.95497065 416 Q9UJX5-2;Q9UJX5;E9PCR4 ANAPC4 Anaphase-promoting complex subunit 4 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 124.52 124.52 3 0.0098983 1 79594 20150910_Q1_SA_NiHu_Masterprac_group13_B 44.312 26.747 2817500 0 0 0 2817500 0 0 736 416 724 3342 2319 2319 1 ASAGHVAVSSPTPETGPLQR Unmodified 1960.9967 0.99665254 917 P42695 NCAPD3 Condensin-2 complex subunit D3 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 104.84 95.415 3 0.00032388 1 63766 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.585 35.532 2405200 0 1445300 0 0 959920 0 737 917 725 3343;3344 2320 2320 1 ASAILRSQKPVMVK Unmodified 1526.8967 0.89666791 926 P46779 RPL28 60S ribosomal protein L28 yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 2 1 89.622 78.408 3 0.0042115 2 59026 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.864 39.38 4025900 0 0 0 0 2345100 1680800 738 926 726 3345;3346;3347 2321;2322 2322 2 ASAPERTPSPAPK Unmodified 1307.6834 0.68336389 255 C9JJU9;Q96P11-2;Q63ZY6;Q63ZY6-6;Q3KNT7-3 NSUN5;NSUN5P2;NSUN5P1 Putative methyltransferase NSUN5;Putative methyltransferase NSUN5C;Putative NOL1/NOP2/Sun domain family member 5B yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 2 2 2 2 2 43.105 37.996 2;3 0.0022763 5 31819 20150910_Q1_SA_NiHu_Masterprac_group15_C 66.326 32.276 35756000 2891400 5172700 8203000 3112700 5960800 10415000 739 255 727 3348;3349;3350;3351;3352;3353;3354;3355;3356;3357;3358 2323;2324;2325;2326;2327 2326 5 ASAPLSQSGLATANGKPEPTSIS Unmodified 2183.107 0.10699085 546 F8VXI8;Q9H9L4;F8VX10;H0YHR2 KANSL2 KAT8 regulatory NSL complex subunit 2 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 128.59 120.73 2 6.8484E-08 2 84334 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.316 58.614 11298000 0 770350 7064800 0 0 3463200 740 546 728 3359;3360;3361 2328;2329 2329 2 ASAPSPNAQVACDHCLK Unmodified 1824.8247 0.82470153 1105 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 84.201 75.669 3 0.00088672 1 52208 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.316 64.044 10994000 1091900 0 1984900 593740 3539900 3783800 741 1105 729 3362;3363;3364;3365;3366 2330 2330 0 ASAQQENSSTCIGSAIK Unmodified 1750.8156 0.81557663 1560 Q9NXV6 CDKN2AIP CDKN2A-interacting protein yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 88.073 79.421 2 0.0030837 5 54589 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.977 46.17 8743100 922330 0 1221100 939400 2204100 3456200 742 1560 730 3367;3368;3369;3370;3371 2331;2332;2333;2334;2335 2333 5 ASASGSGAQVGGPISSGSSASSVTVTR Unmodified 2364.1517 0.15170921 783 P02545;P02545-3;D6RAQ3;E7EUI9 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 111.6 101.81 2;3 1.4431E-17 10 68979 20150910_Q1_SA_NiHu_Masterprac_group10_C 82.942 82.942 173070000 18276000 39774000 32861000 7113200 6298200 68749000 743 783 731 3372;3373;3374;3375;3376;3377;3378;3379;3380;3381;3382 2336;2337;2338;2339;2340;2341;2342;2343;2344;2345 2345 10 ASASGSGAQVGGPISSGSSASSVTVTRSYR Unmodified 2770.3482 0.34817719 783 P02545;P02545-3;D6RAQ3;E7EUI9 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 114.03 104.91 3 9.4451E-05 3 70957 20150910_Q1_SA_NiHu_Masterprac_group10_C 40.625 27.179 33722000 5175100 7802800 8315800 4089400 3671300 4667400 744 783 732 3383;3384;3385;3386;3387;3388 2346;2347;2348 2347 3 ASASPGENDSGTGGEEPQRDK Unmodified 2087.8992 0.89918292 1150 Q15911-2;Q15911 ZFHX3 Zinc finger homeobox protein 3 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 38.327 33.653 3 1.5826E-05 3 27184 20150910_Q1_SA_NiHu_Masterprac_group13_C 62.916 34.368 3253900 0 470230 880870 387310 389330 1126200 745 1150 733 3389;3390;3391;3392;3393 2349;2350;2351 2350 3 ASASYHISNLLEK Acetyl (Protein N-term) 1473.7464 0.74635808 1266 Q86VP6-2;Q86VP6 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 1 0 0 By matching By matching By MS/MS By matching By matching By matching 1 133.48 115.49 2 6.4455E-35 1 84491 20150910_Q1_SA_NiHu_Masterprac_group13_C 122.1 83.918 18123000 0 0 18123000 0 0 0 746 1266 734 3394 2352 2352 1 ASAVSELSPR Unmodified 1015.5298 0.52982336 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 80.889 75.193 2 2.9755E-05 4 57103 20150910_Q1_SA_NiHu_Masterprac_group15_C 110.39 43.053 28501000 4276600 2660400 0 3999000 5264400 12301000 747 1639 735 3395;3396;3397;3398;3399 2353;2354;2355;2356 2354 4 ASDGISKGDTHEASACLGFQEEDPPGEK Unmodified 2931.2829 0.28285932 39 Q7Z5J4-3;E7EVZ3;Q7Z5J4;A8MTC3;Q7Z5J4-2;C9JWB0;A8MXE8;Q7Z5J4-4;E7ETW1 RAI1 Retinoic acid-induced protein 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 116.65 106.25 4 0.028338 1 75136 20150910_Q1_SA_NiHu_Masterprac_group15_C 28.011 22.958 2373700 0 0 0 0 1125200 1248600 748 39 736 3400;3401 2357 2357 1 ASDGSFSLPLKPVISQPIHDSKSPGASNLK Unmodified 3076.6193 0.61931366 1021 Q00653-3;Q00653-4;Q00653 NFKB2 Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 132.78 114.93 4 0.034813 1 81839 20150910_Q1_SA_NiHu_Masterprac_group15_C 23.467 14.755 2926200 0 0 0 0 2926200 0 749 1021 737 3402 2358 2358 1 ASDTSSETVFGK Unmodified 1227.5619 0.56191135 1265 Q86V48-2;Q86V48-3;Q86V48 LUZP1 Leucine zipper protein 1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 2 2 1 81.447 69.892 2 0.0075788 2 55337 20150910_Q1_SA_NiHu_Masterprac_group13_C 61.532 28.475 4776300 0 731770 1165300 0 1094500 1784700 750 1265 738 3403;3404;3405;3406;3407;3408 2359;2360 2359 2 ASEAEAPDKHGSASFVSLLK Unmodified 2043.0273 0.027283968 1560 Q9NXV6 CDKN2AIP CDKN2A-interacting protein yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 131.19 131.19 4 0.011589 1 84215 20150910_Q1_SA_NiHu_Masterprac_group13_B 40.645 15.796 2265900 0 0 0 2265900 0 0 751 1560 739 3409 2361 2361 1 ASEAQPPVARTQPSSGVDSAVGTLPATSPQSTSVQAK Unmodified 3606.8125 0.81254675 1082 Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 130.5 125.07 3 3.332E-24 2 76939 20150910_Q1_SA_NiHu_Masterprac_group10_C 54.036 42.702 21966000 13629000 2231500 0 6105400 0 0 752 1082 740 3410;3411;3412 2362;2363 2363 2 ASEDIAK Acetyl (Protein N-term) 774.37595 0.37594848 921 P46060;B0QYT6;B0QYT5;B0QYT4 RANGAP1 Ran GTPase-activating protein 1 yes no 1 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 59.148 51.051 1 0.024106 2 37143 20150910_Q1_SA_NiHu_Masterprac_group10_B 50.632 9.946 1218600 0 409670 808890 0 0 0 753 921 741 3413;3414 2364;2365 2365 2 ASEETLLGISK Unmodified 1146.6132 0.61321864 49 A8MVI8;Q6NW34-2;Q6NW34;E9PFF8 C3orf17 Uncharacterized protein C3orf17 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 120.99 118.25 2 5.3143E-13 1 80199 20150910_Q1_SA_NiHu_Masterprac_group15_B 116.74 87.186 2704600 0 366830 0 0 0 2337800 754 49 742 3415;3416 2366 2366 1 ASEGPAFFPGR Unmodified 1134.5458 0.54580778 1543 Q9NSD9;F5H6Y1 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 119.4 118.7 2 0.0066788 1 76465 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.721 36.632 1574100 0 1574100 0 0 0 0 755 1543 743 3417 2367 2367 1 ASESSKPWPDATYGTGSASR Unmodified 2053.9341 0.93411186 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 100.58 92.47 3 1.0268E-100 8 67474 20150910_Q1_SA_NiHu_Masterprac_group15_C 133.35 133.35 124820000 40440000 12751000 16251000 12077000 16220000 27079000 756 1639 744 3418;3419;3420;3421;3422;3423 2368;2369;2370;2371;2372;2373;2374;2375 2371 8 ASESSKPWPDATYGTGSASRASAVSELSPR Unmodified 3051.4534 0.45337054 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 131.17 120.03 4 4.1197E-132 3 77362 20150910_Q1_SA_NiHu_Masterprac_group10_C 127.41 121.17 63336000 25311000 0 0 34502000 3522900 0 757 1639 745 3424;3425;3426 2376;2377;2378 2378 3 ASEVEEILDGNDEK Unmodified 1546.6999 0.6998614 592 Q12824-2;Q12824;G5E975;C9JTA6;B5MCL5 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 132.92 115.07 2 0.028272 1 81992 20150910_Q1_SA_NiHu_Masterprac_group15_C 41.838 16.51 1865200 0 0 0 0 1865200 0 758 592 746 3427 2379 2379 1 ASFASASAEVGK Unmodified 1123.551 0.55095274 462 E9PPY3;O43159 RRP8 Ribosomal RNA-processing protein 8 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 1 84.054 77.738 2 8.04E-13 3 60197 20150910_Q1_SA_NiHu_Masterprac_group13_C 112.5 85.749 26908000 3743400 4807100 5886200 2364500 0 10107000 759 462 747 3428;3429;3430;3431;3432;3433 2380;2381;2382 2380 3 ASGAGGVGGGGGGKIR Acetyl (Protein N-term) 1298.6691 0.66911081 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 1 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 60.536 54.62 2 3.6486E-140 5 40859 20150910_Q1_SA_NiHu_Masterprac_group10_C 152 96.196 32014000 2701300 2348200 4381300 7267900 7088400 8227200 760 531 748 3434;3435;3436;3437;3438;3439;3440 2383;2384;2385;2386;2387 2387 5 ASGLAAGKGVIVAK Unmodified 1240.7503 0.75032125 239 C9JBJ1;C9JTV6;F8WD69;P22102-2;P22102;H7C366 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 1 2 2 88.591 80.196 2;3 0.0031465 4 55216 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.68 47.003 15402000 1405900 2390200 1812600 702060 2472700 6618100 761 239 749 3441;3442;3443;3444;3445;3446;3447;3448;3449;3450;3451 2388;2389;2390;2391 2388 4 ASGNYATVISHNPETK Unmodified 1687.8166 0.81656291 456 E9PKZ0;P62917;G3V1A1;E9PIZ3 RPL8 60S ribosomal protein L8 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 91.739 83.994 2;3 1.244E-26 12 57655 20150910_Q1_SA_NiHu_Masterprac_group10_C 107.5 86.763 42831000 6381700 5472600 3864700 4885300 11814000 10412000 762 456 750 3452;3453;3454;3455;3456;3457;3458;3459;3460;3461;3462;3463 2392;2393;2394;2395;2396;2397;2398;2399;2400;2401;2402;2403 2403 12 ASGPPVSELITK Unmodified 1197.6605 0.66050319 818;843 P16403;P10412;P16402 HIST1H1C;HIST1H1E;HIST1H1D Histone H1.2;Histone H1.4;Histone H1.3 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 1 129.85 119.79 2 3.7356E-166 8 77632 20150910_Q1_SA_NiHu_Masterprac_group10_C 171.62 119.89 360120000 211680000 11292000 40839000 7446200 62823000 26042000 763 843;818 751 3464;3465;3466;3467;3468;3469;3470;3471;3472 2404;2405;2406;2407;2408;2409;2410;2411 2411 7 ASGVAVSDGVIK Acetyl (Protein N-term) 1143.6136 0.61355299 461 E9PP50;P23528;E9PK25;E9PS23 CFL1 Cofilin-1 yes no 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 130.12 122.38 1;2 1.1868E-65 6 80801 20150910_Q1_SA_NiHu_Masterprac_group10_B 142.76 61.847 278080000 3203500 32088000 94997000 11963000 13957000 121870000 764 461 752 3473;3474;3475;3476;3477;3478;3479;3480 2412;2413;2414;2415;2416;2417 2416 5 ASGVQVADEVCR Acetyl (Protein N-term) 1331.614 0.6139637 980 P60981;F6RFD5 DSTN Destrin yes no 1 0 0 By matching By matching By MS/MS By matching By matching By matching 1 130.43 112.44 2 0.011799 1 81119 20150910_Q1_SA_NiHu_Masterprac_group13_C 60.345 35.993 1795000 0 0 1795000 0 0 0 765 980 753 3481 2418 2418 0 ASHNNTQIQVVSASNEPLAFASCGTEGFRNAK Unmodified 3404.6168 0.61676425 1015 P82912-2;P82912 MRPS11 28S ribosomal protein S11, mitochondrial yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 133.06 132.76 4 3.6521E-20 1 86037 20150910_Q1_SA_NiHu_Masterprac_group10_B 72.11 58.394 39923000 0 23487000 0 16436000 0 0 766 1015 754 3482;3483 2419 2419 0 ASKENDWYLAYK Unmodified 1486.7092 0.70924429 162 B4E2Z2;P43246;E9PHA6;E7EU21;E7EQQ1;C9J809 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 2 2 120.36 118.31 2;3 0.0025013 3 76263 20150910_Q1_SA_NiHu_Masterprac_group10_B 74.537 44.332 6660100 0 2407900 0 421440 0 3830800 767 162 755 3484;3485;3486;3487;3488 2420;2421;2422 2422 3 ASLCCPFCR Unmodified 1169.478 0.47800426 1292 Q8IYW5;F8WD60 RNF168 E3 ubiquitin-protein ligase RNF168 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 113.53 104.2 2 0.025927 2 71138 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.568 34.81 7797200 638920 1075300 1428000 0 0 4655000 768 1292 756 3489;3490;3491;3492 2423;2424 2423 2 ASLCISTK Unmodified 878.45315 0.45315295 815 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 70.391 67.307 2 0.02381 3 47013 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.679 28.118 22014000 5343500 8149700 0 3032200 0 5488600 769 815 757 3493;3494;3495;3496 2425;2426;2427 2426 3 ASLDSVFSDKLHSK Unmodified 1532.7835 0.78347187 1228 Q6PCB5-2;Q6PCB5 RSBN1L Round spermatid basic protein 1-like protein yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 125.52 117.73 3 3.246E-14 6 76637 20150910_Q1_SA_NiHu_Masterprac_group10_C 100.73 64.918 13701000 0 1022200 7083700 0 0 5595600 770 1228 758 3497;3498;3499;3500 2428;2429;2430;2431;2432;2433 2433 6 ASLGLADHRELGK Unmodified 1365.7365 0.7364621 1630 Q9Y2A7;Q9Y2A7-2 NCKAP1 Nck-associated protein 1 yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 83.777 76.198 3 0.0031428 3 57796 20150910_Q1_SA_NiHu_Masterprac_group15_C 64.121 46.535 7453600 530070 707690 1296700 838940 1574300 2506000 771 1630 759 3501;3502;3503;3504;3505;3506 2434;2435;2436 2436 3 ASLGSLEGEAEAEASSPKGK Unmodified 1916.9327 0.93271488 1054 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 129.29 128.69 3 0.019692 1 82284 20150910_Q1_SA_NiHu_Masterprac_group10_B 37.334 22.541 1661300 0 1661300 0 0 0 0 772 1054 760 3507 2437 2437 1 ASLNGADIYSGCCTLK Unmodified 1728.7811 0.78110538 838 P14866;A6NIT8;B4DPK8;B4DVF8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 129.75 120.25 2 0 4 77577 20150910_Q1_SA_NiHu_Masterprac_group10_C 185.86 146.69 238700000 82230000 18695000 61577000 276830 9966000 65952000 773 838 761 3508;3509;3510;3511;3512;3513 2438;2439;2440;2441 2441 4 ASLSAPGSEYGSPSVISVSK Unmodified 1921.9633 0.96328673 717 O43474-4;O43474-1;O43474 KLF4 Krueppel-like factor 4 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 132.4 119.55 2 2.0146E-18 6 78710 20150910_Q1_SA_NiHu_Masterprac_group10_C 100.41 81.404 173170000 59065000 0 24586000 43877000 45642000 0 774 717 762 3514;3515;3516;3517;3518 2442;2443;2444;2445;2446;2447 2447 6 ASLSLIEK Unmodified 859.50148 0.50148335 957 P52292 KPNA2 Importin subunit alpha-1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 108.75 101.23 2 0.037841 1 68976 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.846 34.66 2787000 0 1155500 482170 0 0 1149300 775 957 763 3519;3520;3521 2448 2448 1 ASLSRPLNYEPHKGK Unmodified 1695.9057 0.90565269 1463;1464 Q9BXS6-2;Q9BXS6-3;Q9BXS6;Q9BXS6-5;Q9BXS6-4 NUSAP1 Nucleolar and spindle-associated protein 1 no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 70.959 62.085 3 0.0075765 1 43325 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.75 42.508 4470900 0 788790 967170 0 860150 1854800 776 1463;1464 764 3522;3523;3524;3525 2449 2449 1 ASMAGASSSKESSRISDGK Unmodified 1854.8742 0.87415414 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 48.28 40.936 3 0.0095847 1 28256 20150910_Q1_SA_NiHu_Masterprac_group13_B 49.537 49.537 5302000 1314100 0 1038900 2143000 806080 0 777 383;1082 765 3526;3527;3528;3529 2450 2450 1 ASMLQEYSK Unmodified 1055.4957 0.49574604 19 A6NF48;Q9Y2X9;F5H1Z5 ZNF281 Zinc finger protein 281 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 93.991 84.842 2 0.0043552 1 58257 20150910_Q1_SA_NiHu_Masterprac_group15_B 105.2 82.958 1397100 0 0 0 0 248590 1148500 778 19 766 3530;3531 2451 2451 1 ASMQPIQIAEGTGITTR Unmodified 1772.9091 0.90908309 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;Q9BTE9 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 133.33 132.72 2 0.0037036 2 86320 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.346 21.03 15910000 0 15910000 0 0 0 0 779 1121 767 3532;3533 2452;2453 2453 2 ASMQPIQIAEGTGITTRQQRK Unmodified 2313.2223 0.22231216 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;Q9BTE9 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 127.5 122.19 4 0.006538 2 84380 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.679 33.427 15157000 6907600 1401400 0 1517200 0 5331000 780 1121 768 3534;3535;3536;3537 2454;2455 2454 2 ASMQQQQQLASAR Unmodified 1445.7045 0.70451004 1649 Q9Y3Y2-4;Q9Y3Y2;Q9Y3Y2-3 CHTOP Chromatin target of PRMT1 protein yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 66.066 59.148 2 5.2218E-09 4 42109 20150910_Q1_SA_NiHu_Masterprac_group10_B 101.61 75.907 29121000 0 1815100 4298900 3110500 9279200 10617000 781 1649 769 3538;3539;3540;3541;3542 2456;2457;2458;2459 2459 4 ASNEDVTKAVDITTPK Unmodified 1687.8628 0.8628444 741 O75475;O75475-2 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 3 2 1 111.32 103.05 2;3 8.2833E-98 6 74872 20150910_Q1_SA_NiHu_Masterprac_group13_C 140.49 140.49 138200000 29736000 24316000 34302000 5571200 15924000 28351000 782 741 770 3543;3544;3545;3546;3547;3548;3549;3550;3551;3552;3553 2460;2461;2462;2463;2464;2465 2461 6 ASNLEGESNSSETPSTSTVWGGTCK Unmodified 2585.1188 0.1187541 1302 Q8N5C6 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 128.29 113.6 2;3 1.4725E-65 6 81054 20150910_Q1_SA_NiHu_Masterprac_group13_C 112.74 107.1 72915000 29027000 0 35894000 3471900 4521800 0 783 1302 771 3554;3555;3556;3557;3558;3559;3560 2466;2467;2468;2469;2470;2471 2467 6 ASNLLYGQLK Unmodified 1105.6132 0.61315906 1287 Q8IXB1;Q8IXB1-2;F8W884 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 1 1 127.67 118.17 2 2.3531E-06 4 77059 20150910_Q1_SA_NiHu_Masterprac_group10_C 112.85 63.565 90926000 22379000 15786000 27793000 9965000 0 15003000 784 1287 772 3561;3562;3563;3564;3565;3566;3567 2472;2473;2474;2475 2475 4 ASNVTNKTDPR Acetyl (Protein N-term) 1243.6157 0.61567826 68 G3V576;G3V4W0;B4DY08;G3V4C1;P07910-2;B2R603;G3V2Q1;P07910;P07910-3;G3V555;G3V575;P07910-4;G3V2H6;G3V4M8;Q569J8;G3V5X6;G3V3K6;G3V251;B4DSU6 HNRNPC;HNRPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 54.879 48.721 2 0.0011263 5 35666 20150910_Q1_SA_NiHu_Masterprac_group10_B 93.839 48.178 78104000 5581200 18318000 11237000 8031100 17386000 17551000 785 68 773 3568;3569;3570;3571;3572;3573 2476;2477;2478;2479;2480 2479 4 ASPGLLPVANGNSLNK Unmodified 1550.8417 0.84165545 1116 Q14814-6;Q14814-3;Q5T9U4;Q14814-5;Q14814-4;Q14814-2;Q14814 MEF2D Myocyte-specific enhancer factor 2D yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.98 127.01 2 0.019007 1 86894 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.322 28.61 7573600 0 0 0 0 0 7573600 786 1116 774 3574 2481 2481 0 ASPQPALTVKAK Unmodified 1209.7081 0.70812208 1310 Q8N9M1-3;Q8N9M1-2;Q8N9M1 C19orf47 Uncharacterized protein C19orf47 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 68.898 61.654 3 0.0018634 1 43243 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.045 52.156 5889100 912610 1057700 787960 856840 947150 1326800 787 1310 775 3575;3576;3577;3578;3579;3580 2482 2482 1 ASPSGQNISYIHSSSESVTPR Unmodified 2203.0505 0.050538606 1567 Q9NZC9;H7C051;H7BYI2 SMARCAL1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 107.33 97.581 3 0.0061132 1 64783 20150910_Q1_SA_NiHu_Masterprac_group10_B 42.639 25.715 2613300 0 2288700 324550 0 0 0 788 1567 776 3581;3582 2483 2483 1 ASPVTTSPTAATTQNPVLSK Unmodified 1970.032 0.032034995 1400 Q96JN0-2;Q96JN0 LCOR Ligand-dependent corepressor yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 129.15 113.46 2 0.0026863 1 74940 20150910_Q1_SA_NiHu_Masterprac_group10_C 48.919 31.215 1406800 1406800 0 0 0 0 0 789 1400 777 3583 2484 2484 1 ASQGLLSSIENSESDSSEAK Unmodified 2037.9338 0.93383709 1201 Q5UIP0-2;Q5UIP0 RIF1 Telomere-associated protein RIF1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.43 131.82 2 4.9301E-53 2 85317 20150910_Q1_SA_NiHu_Masterprac_group10_B 118.84 85.402 14957000 0 14957000 0 0 0 0 790 1201 778 3584 2485;2486 2485 2 ASQNTSSSNSSTRGTQNQLR Unmodified 2122.9951 0.99514899 1403 Q96KR1;B5MEH6 ZFR Zinc finger RNA-binding protein yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 33.984 29.597 3 0.00092307 2 20298 20150910_Q1_SA_NiHu_Masterprac_group10_B 54.768 54.768 70981000 10113000 12340000 17676000 5175600 9879900 15797000 791 1403 779 3585;3586;3587;3588;3589;3590 2487;2488 2488 2 ASQPDLVDTPTSSKPQPK Unmodified 1894.9636 0.96362108 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 85.362 77.784 3 7.3695E-22 7 53324 20150910_Q1_SA_NiHu_Masterprac_group13_B 103.13 85.428 59986000 7532000 10268000 17291000 5652300 200710 19042000 792 919;920 780 3591;3592;3593;3594;3595;3596 2489;2490;2491;2492;2493;2494;2495 2490 6 ASQQQQTNSIRNYFQPSTKK Unmodified 2353.1775 0.17747045 736 O60934;F5H3R2 NBN Nibrin yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 106.86 98.1 4 0.007578 1 66981 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.044 33.283 11376000 2389300 1491700 1301000 1673900 1888600 2631800 793 736 781 3597;3598;3599;3600;3601;3602 2496 2496 1 ASQREGRLQQGNMR Oxidation (M) 1645.8067 0.8066837 28 A6NL46 Putative UPF0607 protein ENSP00000332738 yes yes 0 1 2 By matching By matching By matching By matching By matching By MS/MS 1 1 124.09 112.81 2 0.017367 1 77133 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.347 19.817 2749900 0 0 2060500 0 0 689380 794 28 782 3603;3604 2497 2497 5 1 ASSAAAAAALSR Unmodified 1045.5516 0.55162144 1318 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 69.811 64.216 2 4.0721E-08 3 44829 20150910_Q1_SA_NiHu_Masterprac_group15_B 106.54 75.719 12160000 1321000 1489500 0 868120 3278600 5202400 795 1318 783 3605;3606;3607;3608;3609 2498;2499;2500 2499 3 ASSASAPSSTPTGTTVVK Unmodified 1647.8315 0.83154427 1225 Q6P4R8-3;Q6P4R8;Q6P4R8-2 NFRKB Nuclear factor related to kappa-B-binding protein yes no 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 76.004 70.055 2 1.4278E-22 2 48658 20150910_Q1_SA_NiHu_Masterprac_group15_B 106.31 71.011 2755400 0 0 986270 439600 0 1329600 796 1225 784 3610;3611;3612 2501;2502 2502 2 ASSDLEQLCSHVNEK Acetyl (Protein N-term) 1757.789 0.78902753 1372 Q96BD8-2;Q96BD8 SKA1 Spindle and kinetochore-associated protein 1 yes no 1 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 132.96 117.27 2 0.00038369 2 78716 20150910_Q1_SA_NiHu_Masterprac_group10_C 79.471 63.231 12306000 12306000 0 0 0 0 0 797 1372 785 3613;3614 2503;2504 2504 2 ASSLDDLRALKGK Unmodified 1372.7674 0.76742787 255 C9JJU9;Q96P11-2;G3V0G9;Q96P11;Q96P11-4;Q96P11-3 NSUN5 Putative methyltransferase NSUN5 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 105.32 96.81 3 7.8072E-05 6 71549 20150910_Q1_SA_NiHu_Masterprac_group13_C 97.163 65.441 67902000 9810500 18931000 6564200 6481000 7279700 18835000 798 255 786 3615;3616;3617;3618;3619;3620 2505;2506;2507;2508;2509;2510 2505 6 ASSLHRTSSGTSLSAMHSSGSSGK Unmodified 2319.0873 0.087334818 1063 Q12888;Q12888-2;A6NNK5;F8VY86 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 52.702 47.043 3;4 1.1478E-08 4 33446 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.525 55.326 20477000 0 3189100 6142700 2683000 3559600 4902200 799 1063 787 3621;3622;3623;3624;3625;3626;3627;3628 2511;2512;2513;2514 2512 4 ASSLPSSAPAVK Unmodified 1113.603 0.60298831 1205 Q5VUA4;Q5VUA4-2 ZNF318 Zinc finger protein 318 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 83.314 75.914 2 0.016043 2 52337 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.005 9.3912 6100700 0 993290 997040 590460 1193000 2326900 800 1205 788 3629;3630;3631;3632;3633 2515;2516 2516 2 ASSSSASSAGALESSLDRK Unmodified 1809.8704 0.87044898 1202 Q5VT52-3;Q5VT52;B4E2Q6;Q5VT52-4 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 99.456 91.735 3 5.2163E-11 6 62794 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.342 71.015 6132600 0 1174500 1393600 781120 969930 1813400 801 1202 789 3634;3635;3636;3637;3638 2517;2518;2519;2520;2521;2522 2520 6 ASSVGNVADSTEPTK Acetyl (Protein N-term) 1503.7053 0.70528113 705 O15294 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes yes 1 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 98.579 93.24 2 5.2169E-05 6 69407 20150910_Q1_SA_NiHu_Masterprac_group13_C 88.311 45.836 12799000 0 2995400 3346000 1227200 0 5230800 802 705 790 3639;3640;3641;3642;3643 2523;2524;2525;2526;2527;2528 2523 6 ASSVGNVADSTEPTKR Acetyl (Protein N-term) 1659.8064 0.80639216 705 O15294 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes yes 1 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 91.78 85.347 2 7.4497E-05 1 58124 20150910_Q1_SA_NiHu_Masterprac_group10_B 88.108 71.578 2369000 0 974420 1033200 361410 0 0 803 705 791 3644;3645;3646 2529 2529 1 ASTAASSALGFSK Unmodified 1196.6037 0.60371659 779 O96028-5;O96028-3;O96028;H0Y9U6 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 99.537 91.408 2 6.544E-16 5 62454 20150910_Q1_SA_NiHu_Masterprac_group15_B 111.88 90.481 14941000 799560 2742000 2172400 1016300 2045500 6165500 804 779 792 3647;3648;3649;3650;3651;3652 2530;2531;2532;2533;2534 2532 5 ASTAPGAEASPSPCITER Unmodified 1800.8312 0.8312267 1214 Q66PJ3 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 97.979 86.115 2 0.028288 1 59045 20150910_Q1_SA_NiHu_Masterprac_group15_B 36.214 25.484 1153900 0 0 191780 0 484640 477480 805 1214 793 3653;3654;3655 2535 2535 1 ASTEEQYDLK Acetyl (Protein N-term) 1224.551 0.55101232 1406 Q96LW9;C9J1X2;C9JH14;C9JHB1;C9JAI0;C9J6S7;C9JIC2;C9IYT1;C9JPM5 ZSCAN31 Zinc finger and SCAN domain-containing protein 31 yes no 1 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 2 1 103.43 92.678 2 0.012271 2 63461 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.691 29.623 8713900 0 0 1746300 482780 1966200 4518600 806 1406 794 3656;3657;3658;3659;3660 2536;2537 2536 2 ASTEEQYDLKIVK Acetyl (Protein N-term) 1564.7985 0.79845323 1406 Q96LW9;C9J1X2;C9JH14;C9JHB1;C9JAI0;C9J6S7;C9JIC2;C9IYT1;C9JPM5 ZSCAN31 Zinc finger and SCAN domain-containing protein 31 yes no 1 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 131.5 126.07 2 2.2083E-274 2 83656 20150910_Q1_SA_NiHu_Masterprac_group10_B 186.16 186.16 31414000 8193100 14251000 0 8969700 0 0 807 1406 795 3661;3662;3663 2538;2539 2538 2 ASTSDYQVISDRQTPK Unmodified 1794.8748 0.87480607 144 B4DYB4;Q8NFH5;B4DP57 NUP35 Nucleoporin NUP53 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 89.999 82.304 3 0.00024538 4 56387 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.753 62.657 9877400 787710 1572800 1563500 947670 1602900 3402800 808 144 796 3664;3665;3666;3667;3668;3669 2540;2541;2542;2543 2541 4 ASTSDYQVISDRQTPKK Unmodified 1922.9698 0.96976909 144 B4DYB4;Q8NFH5;B4DP57 NUP35 Nucleoporin NUP53 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 75.765 68.303 3 0.022329 1 47766 20150910_Q1_SA_NiHu_Masterprac_group10_B 45.54 20.516 5005600 472940 689860 1383900 428850 1230300 799760 809 144 797 3670;3671;3672;3673;3674;3675 2544 2544 1 ASVEERITQVAKK Unmodified 1457.8202 0.82019173 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 91.902 82.602 3 0.005549 1 56565 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.525 46.407 6969800 0 1014300 1593900 0 342070 4019500 810 486 798 3676;3677;3678;3679 2545 2545 1 ASVPSVQIQGQR Unmodified 1268.6837 0.68369824 170 Q86YP4;B5MC40;Q86YP4-2;B4DKZ7 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 98.48 91.294 2 0.0035674 1 61547 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.216 34.139 12096000 0 2077000 2667900 0 0 7351200 811 170 799 3680;3681;3682 2546 2546 1 ASVSELACIYSALILHDDEVTVTEDKINALIK Acetyl (Protein N-term) 3571.8331 0.83313076 796 P05386 RPLP1 60S acidic ribosomal protein P1 yes yes 1 0 1 By matching By MS/MS By matching By matching By matching By matching 1 134.17 133.56 3 4.0088E-106 1 87400 20150910_Q1_SA_NiHu_Masterprac_group10_B 117.96 104.15 94287000 0 94287000 0 0 0 0 812 796 800 3683 2547 2547 1 ASVTLSEAEK Acetyl (Protein N-term) 1075.5397 0.53971935 1127 Q15024 EXOSC7 Exosome complex component RRP42 yes yes 1 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 111.09 102.19 2 0.0046495 3 69306 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.288 52.05 26063000 2094300 4573300 4492400 1786700 3503800 9612200 813 1127 801 3684;3685;3686;3687;3688;3689 2548;2549;2550 2549 3 ASYAEQLSMLK Unmodified 1239.6169 0.61692381 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;H0YH75 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 132.92 122.57 2 5.8559E-14 3 85547 20150910_Q1_SA_NiHu_Masterprac_group10_B 118.77 69.768 67483000 0 31880000 7785500 0 8468100 19350000 814 1121 802 3690;3691;3692;3693 2551;2552;2553 2553 3 ASYAEQLSMLK Oxidation (M) 1255.6118 0.61183843 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;H0YH75 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 1 0 By matching By matching By matching By matching By matching By MS/MS 1 128.77 123.81 2 0.034944 1 83668 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.188 71.231 964780 0 0 0 0 0 964780 815 1121 802 3694 2554 2554 139 0 ASYAEQLSMLKK Unmodified 1367.7119 0.71188683 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;H0YH75 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 116.99 116.59 3 0.0040589 2 75350 20150910_Q1_SA_NiHu_Masterprac_group13_B 61.235 31.691 1636000 0 840520 0 795480 0 0 816 1121 803 3695;3696 2555;2556 2555 2 ATAAETSASEPEAESK Acetyl (Protein N-term) 1619.7162 0.71623974 206 B7ZKM0;Q15020;F8VV04;Q15020-3;F8W667;Q15020-2 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 1 0 0 By matching By matching By matching By matching By matching By MS/MS 1 73.498 72.243 2 0.0098421 1 50057 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.088 19.839 566530 0 0 0 0 0 566530 817 206 804 3697 2557 2557 1 ATAEEMTKYHSDEYIK Unmodified 1914.8669 0.8669435 1358 Q92769;H3BM24;B3KRS5;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9;E5RK19 HDAC2 Histone deacetylase 2;Histone deacetylase yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 96.118 88.156 3;4 4.7075E-164 10 59538 20150910_Q1_SA_NiHu_Masterprac_group10_B 159.12 149.55 105060000 4171200 9897200 21840000 3219200 8741300 57195000 818 1358 805 3698;3699;3700;3701;3702;3703;3704;3705;3706;3707;3708;3709 2558;2559;2560;2561;2562;2563;2564;2565;2566;2567 2565 9 ATAEEMTKYHSDEYIK Oxidation (M) 1930.8619 0.86185812 1358 Q92769;H3BM24;B3KRS5;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9;E5RK19 HDAC2 Histone deacetylase 2;Histone deacetylase yes no 0 1 1 By matching By matching By matching By matching By matching By MS/MS 1 64.946 63.791 3 0.028588 1 44697 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.41 32.62 955330 0 0 0 0 0 955330 819 1358 805 3710 2568 2568 151 0 ATANHAAELLAK Unmodified 1208.6513 0.65133548 1080 Q13415 ORC1 Origin recognition complex subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 2 2 75.582 68.388 2;3 2.9445E-79 12 54689 20150910_Q1_SA_NiHu_Masterprac_group13_C 143.76 109.67 71324000 5135000 8570400 12027000 5014300 10963000 29615000 820 1080 806 3711;3712;3713;3714;3715;3716;3717;3718;3719;3720;3721;3722;3723;3724 2569;2570;2571;2572;2573;2574;2575;2576;2577;2578;2579;2580 2571 12 ATAPAYKPGRGTGVNSNSEK Unmodified 2004.0025 0.0024662011 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 2 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 52.483 46.425 4 0.001241 3 38632 20150910_Q1_SA_NiHu_Masterprac_group15_C 46.133 26.971 12312000 1254400 1671200 1623600 1634600 1993100 4135000 821 1325 807 3725;3726;3727;3728;3729;3730 2581;2582;2583 2581 2 ATAPVPTVGEGYGYGHESELSQASAAAR Unmodified 2775.31 0.31000077 1457 Q9BWF3;E9PB51;B0LM41 RBM4;RBM14 RNA-binding protein 4;RNA-binding protein 14 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 131.19 128.4 3 3.1919E-12 2 83770 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.108 52.751 44915000 0 22472000 0 0 0 22443000 822 1457 808 3731;3732 2584;2585 2585 2 ATASGIMGSPKPAIK Unmodified 1427.7806 0.7806351 1193 Q5T670;Q7L590-2;Q7L590 MCM10 Protein MCM10 homolog yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 89.219 88.215 3 0.00062793 4 59951 20150910_Q1_SA_NiHu_Masterprac_group13_B 73.877 60.132 2480300 0 884480 0 1595800 0 0 823 1193 809 3733;3734;3735;3736 2586;2587;2588;2589 2586 4 ATAVMPDGQFK Unmodified 1163.5645 0.56449431 1044 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 104.21 95.749 2 0.0047468 5 64530 20150910_Q1_SA_NiHu_Masterprac_group10_C 75.416 75.416 202030000 5377900 26820000 13068000 12908000 36408000 107450000 824 1044 810 3737;3738;3739;3740;3741;3742 2590;2591;2592;2593;2594 2594 5 ATAVMPDGQFKDISLSDYKGK Oxidation (M) 2286.1202 0.12019808 1044 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 1 2 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 130.44 130.14 4 3.3269E-05 2 83273 20150910_Q1_SA_NiHu_Masterprac_group10_B 74.776 62.851 9829800 0 5288100 0 4541700 0 0 825 1044 811 3743;3744 2595;2596 2596 123 2 ATAVMPDGQFKDISLSDYKGK Unmodified 2270.1253 0.12528345 1044 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 2 2 2 132.45 119.85 3;4 4.9049E-91 8 87437 20150910_Q1_SA_NiHu_Masterprac_group15_B 128.44 98.857 311430000 49966000 79431000 97780000 0 16301000 67956000 826 1044 811 3745;3746;3747;3748;3749;3750;3751;3752;3753 2597;2598;2599;2600;2601;2602;2603;2604 2599 8 ATCAPQHGAPGPGPADASK Unmodified 1788.8213 0.82133071 860 Q5HY54;P21333-2;P21333;A6NDY9;E9PHF0 FLNA Filamin-A yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 52.233 46.175 3 0.00035432 6 33011 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.462 65.898 19581000 2228200 3879300 4624600 1603400 2914700 4331100 827 860 812 3754;3755;3756;3757;3758;3759 2605;2606;2607;2608;2609;2610 2608 6 ATCFAYGQTGSGK Unmodified 1346.5925 0.59249998 193 B7Z6Q6;Q99661;Q99661-2;Q5JR91;B7Z7M6 KIF2C Kinesin-like protein KIF2C yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 78.337 70.718 2 2.0906E-05 7 49019 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.803 78.004 183000000 24112000 24858000 29025000 12282000 33568000 59153000 828 193 813 3760;3761;3762;3763;3764;3765;3766 2611;2612;2613;2614;2615;2616;2617 2613 7 ATCFAYGQTGSGKTHTMGGDLSGK Unmodified 2431.0896 0.089643003 193 B7Z6Q6;Q99661;Q99661-2;Q5JR91;B7Z7M6 KIF2C Kinesin-like protein KIF2C yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 2 2 2 1 102.72 92.56 3;4 0.0011734 2 62808 20150910_Q1_SA_NiHu_Masterprac_group10_C 52.095 41.72 16711000 4415000 0 6035900 2818700 1864400 1577000 829 193 814 3767;3768;3769;3770;3771;3772;3773;3774 2618;2619 2619 2 ATDENPCGIDSECINR Unmodified 1849.7571 0.75707548 1404 Q96L73-2;Q96L73-3;Q96L73 NSD1 Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 97.314 87.838 2 0.00023404 3 64806 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.379 65.316 5713600 0 1182700 922340 0 1204000 2404600 830 1404 815 3775;3776;3777;3778 2620;2621;2622 2621 2 ATDLGGTSQAGTSQR Unmodified 1448.6855 0.68554874 231 F5H1W0;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4;C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 50.928 42.605 2 0.0025192 2 30627 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.022 52.603 1115700 0 0 269520 0 278460 567780 831 231 816 3779;3780;3781 2623;2624 2623 2 ATDLILDHIRER Unmodified 1450.7892 0.78922595 1273 Q86Y79 PTRH1 Probable peptidyl-tRNA hydrolase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 121.77 119.08 3 0.029744 1 80909 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.894 31.953 3501400 0 648470 0 0 0 2852900 832 1273 817 3782;3783 2625 2625 1 ATDTSQGELVHPK Acetyl (Protein N-term) 1423.6943 0.69432251 1186 Q5SSJ5;B0QZK9;B0QZK8;Q5SSJ5-5 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 84.34 76.761 2 2.1801E-91 5 53093 20150910_Q1_SA_NiHu_Masterprac_group10_B 146.77 126.19 13045000 1919800 1853900 2283400 612380 4443000 1932800 833 1186 818 3784;3785;3786;3787;3788;3789 2626;2627;2628;2629;2630 2629 5 ATEATAMAMGR Unmodified 1108.5005 0.50051385 170 Q86YP4;B5MC40;Q86YP4-2;C9JHD7;C9JJK9;C9JVY3;C9JMI3;C9JGN4 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 77.308 70.356 2 0.0018545 2 48833 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.05 79.242 4047900 0 705280 827460 0 0 2515100 834 170 819 3790;3791;3792 2631;2632 2632 1 ATEEKKPETEAAR Acetyl (Protein N-term) 1500.742 0.74200098 983 P61964 WDR5 WD repeat-containing protein 5 yes yes 1 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 40.259 35.287 3 0.0041957 6 24591 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.732 45.521 32096000 4234800 6058500 5458700 2826300 5115200 8402700 835 983 820 3793;3794;3795;3796;3797;3798 2633;2634;2635;2636;2637;2638 2637 6 ATEHPEPPK Acetyl (Protein N-term) 1046.5033 0.50327426 1083 Q13435;E9PPJ0;E9PJ04;E9PJT3 SF3B2 Splicing factor 3B subunit 2 yes no 1 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 58.282 50.592 2 4.703E-30 3 36268 20150910_Q1_SA_NiHu_Masterprac_group15_B 135.71 81.937 4513800 781320 1040800 208820 0 860400 1622500 836 1083 821 3799;3800;3801;3802;3803 2639;2640;2641 2639 3 ATEISTAVVQR Unmodified 1173.6354 0.63535107 1298 Q8N3X1;Q8N3X1-2 FNBP4 Formin-binding protein 4 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1 94.283 85.172 2 5.7579E-13 5 58273 20150910_Q1_SA_NiHu_Masterprac_group15_B 116.55 60.142 15878000 2857700 2153000 1533700 1165100 3488900 4680100 837 1298 822 3804;3805;3806;3807;3808;3809;3810;3811 2642;2643;2644;2645;2646 2645 5 ATEYIQYMR Unmodified 1173.5488 0.54884425 981 P61244-2;P61244;G3V5L1;Q6V3B1;P61244-3;G3V563;G3V2R5;P61244-4;E7ESS7 MAX Protein max yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 116.46 110.55 2 0.0091454 2 75584 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.136 74.298 4188500 0 336970 1022100 459300 0 2370100 838 981 823 3812;3813;3814;3815 2647;2648 2648 2 ATFDAISK Unmodified 851.43888 0.43888309 839 P15880;H0YEN5;E9PQD7 RPS2 40S ribosomal protein S2 yes no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 78.598 73.547 2 4.0119E-16 3 56220 20150910_Q1_SA_NiHu_Masterprac_group15_C 129.42 95.249 59216000 0 6352600 0 16657000 23625000 12582000 839 839 824 3816;3817;3818;3819 2649;2650;2651 2651 3 ATFIKVPQNQNGK Unmodified 1443.7834 0.78341229 397 E7EX81;P19338;H7BY16;Q9BQ02 NCL Nucleolin yes no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 91.753 83.991 2;3 0.0011436 5 57049 20150910_Q1_SA_NiHu_Masterprac_group10_B 77.387 60.175 18909000 4023900 3346400 1145300 876750 5045800 4471300 840 397 825 3820;3821;3822;3823;3824;3825;3826 2652;2653;2654;2655;2656 2656 5 ATFSEFAAK Unmodified 970.476 0.47599688 696 O14776-2;O14776;G3V220 TCERG1 Transcription elongation regulator 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 99.665 96.706 2 0.0099044 1 66068 20150910_Q1_SA_NiHu_Masterprac_group15_B 100.02 62.858 3705200 0 0 0 0 0 3705200 841 696 826 3827 2657 2657 1 ATFYGEQVDYYK Unmodified 1482.6667 0.66671078 929 P46940;H0YLE8 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 131.21 122.95 2 2.4956E-81 4 83269 20150910_Q1_SA_NiHu_Masterprac_group10_B 148.78 93.526 83657000 0 15171000 14868000 9883900 5812700 37921000 842 929 827 3828;3829;3830;3831;3832 2658;2659;2660;2661 2661 3 ATGANATPLDFPSKK Acetyl (Protein N-term) 1558.7991 0.79912193 1141 Q15637-6;Q15637-4;Q15637-3;Q15637-2;Q15637;Q14820;F8WEV5 SF1 Splicing factor 1 yes no 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 7 1 131.74 118.05 2 2.1144E-229 14 77613 20150910_Q1_SA_NiHu_Masterprac_group10_C 176.43 105.7 313930000 122580000 16603000 67507000 15319000 33470000 58456000 843 1141 828 3833;3834;3835;3836;3837;3838;3839;3840;3841;3842;3843;3844;3845 2662;2663;2664;2665;2666;2667;2668;2669;2670;2671;2672;2673;2674;2675 2675 14 ATGANATPLDFPSKKR Acetyl (Protein N-term) 1714.9002 0.90023296 1141 Q15637-6;Q15637-4;Q15637-3;Q15637-2;Q15637;Q14820;F8WEV5 SF1 Splicing factor 1 yes no 1 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 116.68 106.41 3 0.0023003 3 75505 20150910_Q1_SA_NiHu_Masterprac_group15_C 60.55 40.872 15405000 4159900 1749700 4236100 2430800 2828700 0 844 1141 829 3846;3847;3848;3849;3850 2676;2677;2678 2678 3 ATGAQDFSDCCGQKPTGPGGPLIQNVHASK Unmodified 3097.4346 0.43456613 427 Q9UHL9-2;Q9UHL9;E9PFE2;Q9UHL9-3 GTF2IRD1 General transcription factor II-I repeat domain-containing protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 123.33 113.52 4 1.3612E-77 4 80219 20150910_Q1_SA_NiHu_Masterprac_group13_C 111.27 89.538 20670000 8125800 1614000 6918200 0 0 4012100 845 427 830 3851;3852;3853;3854 2679;2680;2681;2682 2680 4 ATGGGLSSVGGGSSTIK Unmodified 1434.7314 0.7314363 788 P04259;CON__P04259;F5H6G5 KRT6B Keratin, type II cytoskeletal 6B yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 89.802 80.879 2 0.030213 1 56190 20150910_Q1_SA_NiHu_Masterprac_group10_C 37.687 21.929 11646000 485820 972110 933390 2432000 6822300 0 + 846 788 831 3855;3856;3857;3858;3859 2683 2683 1 ATGNDLRPPPPSPSSDLTHPMK Unmodified 2314.1376 0.13757947 1576 Q9P275;Q9P275-2;E9PEW0 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 2 1 2 114.63 104.35 4 0.00071309 3 71288 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.876 39.683 14232000 0 1745200 2458000 0 1173600 8855100 847 1576 832 3860;3861;3862;3863;3864;3865 2684;2685;2686 2685 1 ATHRLLLLGAGESGK Unmodified 1521.8627 0.86272524 1000;1001;1002 P63092-2;A2A2R6;P38405;P63092;Q5JWD1;A6NI00;P63092-3 GNAS;GNAL Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(olf) subunit alpha no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 106.79 98.831 3 0.00052677 1 67186 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.428 36.955 6458700 0 411150 1402500 588820 542940 3513300 848 1001;1000;1002 833 3866;3867;3868;3869;3870 2687 2687 1 ATIAGGGVIPHIHK Unmodified 1369.783 0.78301836 816 Q71UI9;P0C0S5;A6NKY0;A6NFA8 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 106.55 98.612 3 0.00013775 2 65428 20150910_Q1_SA_NiHu_Masterprac_group10_B 77.644 57.514 19365000 0 3445400 2464500 1279000 4430000 7745600 849 816 834 3871;3872;3873;3874;3875 2688;2689 2689 1 ATILNTENLSSTPAPK Unmodified 1655.873 0.87301516 1232 Q6PJP8 DCLRE1A DNA cross-link repair 1A protein yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 129.27 122.39 2 2.8401E-11 4 84940 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.662 70.788 12350000 6079300 0 0 681000 0 5589700 850 1232 835 3876;3877;3878 2690;2691;2692;2693 2692 4 ATKIPCESPPLEVVDTTASTK Unmodified 2243.1355 0.13551379 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 2 132.51 120.86 3 1.7987E-280 4 84713 20150910_Q1_SA_NiHu_Masterprac_group13_B 170.02 153.98 775820000 139390000 436750000 120870000 66919000 11894000 0 851 919;920 836 3879;3880;3881;3882;3883;3884 2694;2695;2696;2697 2694 4 ATLLQQR Unmodified 828.48175 0.48175096 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 68.445 57.017 2 0.020995 1 46382 20150910_Q1_SA_NiHu_Masterprac_group13_C 88.029 45.16 4411700 912530 0 3499100 0 0 0 852 919;920 837 3885;3886 2698 2698 1 ATNFLAHEK Acetyl (Protein N-term) 1071.5349 0.53490874 451 E9PK01;P29692;E9PMW7;E9PPR1;E9PL12;E9PQ49;E9PI39;E9PQZ1;P29692-3;E9PBQ9;P29692-2;E9PRY8;E9PNW6;E9PKK3;E9PK72;E9PJD0;E9PN91;E9PIZ1;E9PK06;E9PL71;H0YCK7 EEF1D Elongation factor 1-delta yes no 1 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 118.16 109.98 2 0.024517 2 75241 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.885 21.568 13394000 0 2230500 1763700 2370600 1014600 6014700 853 451 838 3887;3888;3889;3890;3891 2699;2700 2699 2 ATNVCTRFEDSPSYVK Unmodified 1872.8676 0.8676122 500 F5GZI1;O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 109.8 101.82 3 0.0037016 3 69600 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.038 51.938 6529000 0 1408200 1226600 350800 582860 2960600 854 500 839 3892;3893;3894;3895;3896 2701;2702;2703 2702 3 ATPLAAPAGSLSR Unmodified 1210.667 0.66698555 57 B0QYQ2;Q96RU7 TRIB3 Tribbles homolog 3 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 108.25 99.061 2 0.0019703 1 71188 20150910_Q1_SA_NiHu_Masterprac_group15_C 72.705 47.579 9881200 0 704740 504120 2273000 6399300 0 855 57 840 3897;3898;3899;3900 2704 2704 1 ATPLFIAAQEGHTK Unmodified 1482.7831 0.78307794 150 B4DZX6;Q9Y575-2;H7BYZ6;Q9Y575;G8JLA9 ASB3;GPR75-ASB3 Ankyrin repeat and SOCS box protein 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 115.54 112.76 3 0.0032153 1 76790 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.626 47.255 5986200 0 1631700 0 0 0 4354400 856 150 841 3901;3902 2705 2705 1 ATPRLASTNSSVLGADLPSSMKEK Unmodified 2459.269 0.26898758 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;H0YA99;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 2 2 131.16 127.78 3;4 9.1873E-69 4 83699 20150910_Q1_SA_NiHu_Masterprac_group10_B 116.94 98.383 220690000 29373000 105560000 0 85764000 0 0 857 383;1082 842 3903;3904;3905;3906;3907 2706;2707;2708;2709 2707 4 ATPRLASTNSSVLGADLPSSMKEK Oxidation (M) 2475.2639 0.2639022 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;H0YA99;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 1 2 By MS/MS By matching By matching By matching By matching By matching 1 130.09 114.41 4 0.010661 1 75710 20150910_Q1_SA_NiHu_Masterprac_group10_C 48.852 18.192 3437900 3437900 0 0 0 0 0 858 383;1082 842 3908 2710 2710 43 1 ATQETSFDFK Unmodified 1172.535 0.53496832 49 A8MVI8;Q6NW34-2;Q6NW34 C3orf17 Uncharacterized protein C3orf17 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 101.06 97.052 2 0.0088159 3 65933 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.488 29.49 11644000 1112400 1489900 0 2142000 0 6899500 859 49 843 3909;3910;3911;3912 2711;2712;2713 2712 3 ATQQQHDFTLTQTADGR Unmodified 1916.8977 0.89766678 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 90.907 84.931 3 0.00023016 3 63002 20150910_Q1_SA_NiHu_Masterprac_group15_C 83.964 68.145 13289000 328650 3822700 0 730060 2556900 5851000 860 1012 844 3913;3914;3915;3916;3917 2714;2715;2716 2715 3 ATQRDLDNAGELGR Unmodified 1514.7437 0.74373232 218 B9ZVN9;O95602 POLR1A DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 75.756 67.258 3 0.0011291 1 46883 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.529 37.097 2488900 0 0 0 0 1178100 1310800 861 218 845 3918;3919 2717 2717 1 ATSEEDVSIKSPICEK Unmodified 1791.856 0.85604446 1201 Q5UIP0-2;Q5UIP0 RIF1 Telomere-associated protein RIF1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 106.8 99.309 3 0.013096 2 67760 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.764 43.764 5170000 0 2318900 1187000 0 0 1664000 862 1201 846 3920;3921;3922 2718;2719 2718 2 ATSMAAASGRFESAK Acetyl (Protein N-term) 1525.7195 0.7194914 1163 Q2TBE0-3;Q2TBE0-2;Q2TBE0 CWF19L2 CWF19-like protein 2 yes no 1 0 1 By MS/MS By matching By matching By matching By matching By matching 1 129.23 113.54 2 0.00014785 1 75013 20150910_Q1_SA_NiHu_Masterprac_group10_C 88.108 62.659 1239800 1239800 0 0 0 0 0 863 1163 847 3923 2720 2720 1 ATSSATTAAAPTLR Unmodified 1317.6888 0.6888432 1310 Q8N9M1-3;Q8N9M1-2;Q8N9M1 C19orf47 Uncharacterized protein C19orf47 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 78.435 71.055 2 0.012372 1 49352 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.188 28.603 1806200 0 107300 415440 168590 486970 627920 864 1310 848 3924;3925;3926;3927;3928 2721 2721 1 ATSSATTAAAPTLRR Unmodified 1473.79 0.78995423 1310 Q8N9M1-3;Q8N9M1-2;Q8N9M1 C19orf47 Uncharacterized protein C19orf47 yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 67.712 60.501 3 1.5911E-30 3 42442 20150910_Q1_SA_NiHu_Masterprac_group15_B 113.24 90.122 8621900 1653300 1048900 819480 1003000 1744700 2352600 865 1310 849 3929;3930;3931;3932;3933;3934 2722;2723;2724 2723 3 ATTATMATSGSAR Acetyl (Protein N-term) 1266.5874 0.5874146 684 I3L2M0;I3L2Z3;I3L3H2;I3L3F6;P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 1 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 82.624 74.035 2 0.0095262 2 52276 20150910_Q1_SA_NiHu_Masterprac_group10_C 49.62 36.186 2551000 434520 0 0 0 1281300 835090 866 684 850 3935;3936;3937 2725;2726 2726 2 ATTATMATSGSARK Acetyl (Protein N-term) 1394.6824 0.68237762 684 I3L2M0;I3L2Z3;I3L3H2;I3L3F6;P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1 67.68 59.433 2 1.2319E-07 7 41905 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.273 97.273 54992000 12656000 3897100 4918300 4407700 19144000 9967800 867 684 851 3938;3939;3940;3941;3942;3943;3944;3945 2727;2728;2729;2730;2731;2732;2733 2729 7 ATTATMATSGSARK Acetyl (Protein N-term);Oxidation (M) 1410.6773 0.67729224 684 I3L2M0;I3L2Z3;I3L3H2;I3L3F6;P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 1 1 1 By matching By matching By matching By matching By matching By MS/MS 1 1 47.056 43.446 2 0.00063554 1 30823 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.033 49.96 771280 390100 0 0 0 0 381180 868 684 851 3946;3947 2734 2734 67 1 ATVAVSEEHCAPGATSVR Unmodified 1840.8738 0.87376021 1466 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 77.967 75.935 3 0.00062232 4 52388 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.488 69.936 2868400 0 1112800 0 0 0 1755600 869 1466 852 3948;3949 2735;2736;2737;2738 2737 4 ATVEKPSNPFSGDLQK Unmodified 1716.8683 0.86826413 1661 Q9Y6R0 NUMBL Numb-like protein yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 2 1 116.81 107.58 3 0.00037752 5 70832 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.031 52.618 17382000 2391600 3503200 2046700 1378000 4984300 3077900 870 1661 853 3950;3951;3952;3953;3954;3955;3956;3957 2739;2740;2741;2742;2743 2743 4 ATVQQLEGR Acetyl (Protein N-term) 1042.5407 0.5407224 1027 Q01469 FABP5 Fatty acid-binding protein, epidermal yes yes 1 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 111.98 104.09 2 0.02222 1 68783 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.067 13.239 2674500 748060 1926500 0 0 0 0 871 1027 854 3958;3959 2744 2744 1 ATVTATTKVPEIR Acetyl (Protein N-term) 1427.7984 0.79839365 1627 Q9Y230 RUVBL2 RuvB-like 2 yes yes 1 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 126.63 124.77 2 1.3403E-90 1 84564 20150910_Q1_SA_NiHu_Masterprac_group15_B 143.58 85.537 10889000 0 2719700 0 833670 0 7335400 872 1627 855 3960;3961;3962 2745 2745 1 ATVTATTKVPEIRDVTR Acetyl (Protein N-term) 1899.0425 0.042540102 1627 Q9Y230 RUVBL2 RuvB-like 2 yes yes 1 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 131.39 121.89 3 0 6 86248 20150910_Q1_SA_NiHu_Masterprac_group15_B 195.87 147.48 396430000 49309000 253090000 10845000 49427000 1737300 32013000 873 1627 856 3963;3964;3965;3966;3967;3968 2746;2747;2748;2749;2750;2751 2749 6 ATYVNSQATGER Unmodified 1295.6106 0.61059288 1144 Q15652-2;Q15652-3;Q15652 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 55.074 47.955 2 0.013365 3 39212 20150910_Q1_SA_NiHu_Masterprac_group15_C 56.205 35.145 1950200 361170 0 0 0 601960 987090 874 1144 857 3969;3970;3971 2752;2753;2754 2753 3 AVAASKERNGLSLAALK Unmodified 1697.9788 0.97881763 842 P16401 HIST1H1B Histone H1.5 yes yes 0 0 2 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 2 2 110.12 99.975 3;4 0.003597 6 73517 20150910_Q1_SA_NiHu_Masterprac_group13_C 65.565 46.733 32917000 2308700 2001800 9125700 2647400 7929700 8903700 875 842 858 3972;3973;3974;3975;3976;3977;3978;3979;3980 2755;2756;2757;2758;2759;2760 2756 6 AVAASKERSGVSLAALK Unmodified 1656.9523 0.95226853 818;843 P16403;P10412;P16402 HIST1H1C;HIST1H1E;HIST1H1D Histone H1.2;Histone H1.4;Histone H1.3 no no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 3 2 95.961 86.863 3;4 0.001162 8 58691 20150910_Q1_SA_NiHu_Masterprac_group10_C 71.08 36.043 66679000 26215000 5326900 9585000 11702000 10886000 2964000 876 843;818 859 3981;3982;3983;3984;3985;3986;3987;3988;3989;3990;3991;3992 2761;2762;2763;2764;2765;2766;2767;2768 2767 7 AVADRLLEMTSRK Unmodified 1488.8082 0.80824683 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 2 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 126.11 117.03 3 0.0051081 3 81714 20150910_Q1_SA_NiHu_Masterprac_group13_C 74.475 44.563 30204000 0 5127900 13442000 2877200 8757000 0 877 1111 860 3993;3994;3995;3996 2769;2770;2771 2769 3 AVAEFLNRQHSDPNEQVTRK Unmodified 2338.1778 0.1778048 797 P05549-5;Q5TAV5;P05549 TFAP2A Transcription factor AP-2-alpha yes no 0 0 2 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 92.731 85.211 4 0.0014767 2 57749 20150910_Q1_SA_NiHu_Masterprac_group10_B 51.786 37.265 25142000 0 2810300 4539900 5659800 7845400 4286100 878 797 861 3997;3998;3999;4000;4001 2772;2773 2773 2 AVAILCNHQRAPPK Unmodified 1573.8511 0.8511147 825 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 77.165 65.21 3 0.014107 2 51512 20150910_Q1_SA_NiHu_Masterprac_group15_C 48.044 30.082 1975700 444900 0 0 0 1530800 0 879 825 862 4002;4003 2774;2775 2774 1 AVALDSDNISLK Unmodified 1244.6612 0.66123147 53 A8MYI2;H0Y6F6;Q8NEY1-6;Q8NEY1-5;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1 NAV1 Neuron navigator 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 126.8 124.01 2 0.0055041 1 79337 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.864 25.059 1339600 0 464050 0 0 0 875510 880 53 863 4004;4005 2776 2776 1 AVANMQGEMDRK Unmodified 1348.6228 0.62275425 58 B7Z3Z1;F5H449;Q5BJG6;B7Z293;B0QZE2;Q5VUI0;Q15326;F6UH50;Q2LD45;E7ENI9 ZMYND11 Zinc finger MYND domain-containing protein 11 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 63.951 56.097 3 0.0060583 1 39615 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.567 43.286 2316600 402220 0 0 0 841510 1072900 881 58 864 4006;4007;4008 2777 2777 1 AVATWHANTEREQK Unmodified 1639.8067 0.80666693 951 P51531-2;P51531;F6VDE0 SMARCA2 Probable global transcription activator SNF2L2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 2 52.056 45.794 3;4 0.0026422 5 32295 20150910_Q1_SA_NiHu_Masterprac_group13_B 63.091 38.561 14438000 831340 1297600 4013400 2269700 1491500 4534800 882 951 865 4009;4010;4011;4012;4013;4014;4015;4016;4017;4018 2778;2779;2780;2781;2782 2778 4 AVATYHANTEREQK Unmodified 1616.7907 0.79068251 952 P51532-5;P51532-2;P51532-3;P51532-4;P51532;Q9HBD4;F5H0X5 SMARCA4 Transcription activator BRG1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 34.494 28.903 3 0.022199 1 20196 20150910_Q1_SA_NiHu_Masterprac_group10_B 44.511 30.72 4057700 0 2260500 1797200 0 0 0 883 952 866 4019;4020 2783 2783 1 AVDIPHMDIEALKK Unmodified 1578.844 0.84396364 997 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.43 131.83 3 0.0028314 1 85334 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.899 20.222 10694000 0 10694000 0 0 0 0 884 997 867 4021 2784 2784 1 AVDQPRQLFWEK Unmodified 1515.7834 0.78341229 776 O95983;O95983-2 MBD3 Methyl-CpG-binding domain protein 3 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 129.77 129.16 3 0.003957 1 82639 20150910_Q1_SA_NiHu_Masterprac_group10_B 67.214 25.734 12384000 0 12384000 0 0 0 0 885 776 868 4022 2785 2785 1 AVDSQILPK Unmodified 969.5495 0.54949617 551 F8W181;Q02878 RPL6 60S ribosomal protein L6 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 99.72 90.22 2 0.026468 1 61754 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.27 33.08 2795700 0 0 0 0 783680 2012000 886 551 869 4023;4024 2786 2786 1 AVEEDGHLKCPR Unmodified 1409.6721 0.67214728 1576 Q9P275;Q9P275-2;E9PEW0 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 49.408 43.684 3 0.016041 3 32367 20150910_Q1_SA_NiHu_Masterprac_group10_C 54.259 27.11 6707200 616760 964770 583260 401480 1651300 2489600 887 1576 870 4025;4026;4027;4028;4029;4030 2787;2788;2789 2789 3 AVEEQIEYLQK Unmodified 1348.6874 0.68744622 1204 Q5VTR2 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 114.88 111.69 2 0.0048417 2 76350 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.962 63.963 3162200 0 1316200 0 0 0 1846000 888 1204 871 4031;4032 2790;2791 2790 2 AVEIVTSTSAAK Unmodified 1175.6398 0.63976774 1118 Q14966-3;Q14966;Q14966-4 ZNF638 Zinc finger protein 638 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1 1 83.193 76.451 2 0.00069736 5 53506 20150910_Q1_SA_NiHu_Masterprac_group10_C 93.623 66.195 41985000 9667900 6052700 6393900 3979800 7714900 8176300 889 1118 872 4033;4034;4035;4036;4037;4038;4039;4040 2792;2793;2794;2795;2796 2796 5 AVELASLQNAK Unmodified 1142.6295 0.62953741 1231 Q6PJG2;F6RU81;H7C1L3 ELMSAN1 ELM2 and SANT domain-containing protein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 110.92 100.88 2 1.2459E-12 6 68631 20150910_Q1_SA_NiHu_Masterprac_group15_B 113.67 78.897 45421000 4776000 5774000 4868500 4016100 13575000 12411000 890 1231 873 4041;4042;4043;4044;4045;4046;4047 2797;2798;2799;2800;2801;2802 2799 6 AVELEHETFR Unmodified 1229.6041 0.60405094 197 O94762;B7Z8Y7 RECQL5 ATP-dependent DNA helicase Q5 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 93.409 87.332 3 0.011256 3 59109 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.275 40.579 5770300 543770 1346000 0 367750 1160000 2352800 891 197 874 4048;4049;4050;4051;4052 2803;2804;2805 2805 3 AVELEHETFRNAK Unmodified 1542.7791 0.77905519 197 O94762;B7Z8Y7 RECQL5 ATP-dependent DNA helicase Q5 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 79.355 71.827 3 0.002275 6 55226 20150910_Q1_SA_NiHu_Masterprac_group15_C 71.085 39.737 19331000 1870600 3444000 4790800 2157600 3177200 3891300 892 197 875 4053;4054;4055;4056;4057;4058 2806;2807;2808;2809;2810;2811 2809 6 AVEQIRNILK Unmodified 1182.7085 0.70845643 1141 Q15637-6;Q15637-4;Q15637-3;Q15637-2;Q15637 SF1 Splicing factor 1 no no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 119.65 108.47 2 1.6149E-34 2 71980 20150910_Q1_SA_NiHu_Masterprac_group10_C 134.57 63.657 33022000 7763000 8684600 0 0 16575000 0 893 1141 876 4059;4060;4061 2812;2813 2813 2 AVESRVTQEEIK Acetyl (Protein N-term) 1429.7413 0.7412727 691 O00422 SAP18 Histone deacetylase complex subunit SAP18 yes yes 1 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 108.43 98.853 2 0.0008228 4 65545 20150910_Q1_SA_NiHu_Masterprac_group13_B 93.766 67.013 30761000 0 0 8061100 4227900 9038500 9433100 894 691 877 4062;4063;4064;4065 2814;2815;2816;2817 2814 4 AVFPSIVGRPR Unmodified 1197.6982 0.6982261 164 F5H0N0;B4E335;P63261;P60709;I3L3I4;G5E9R0;I3L3R2;E7EVS6;I3L3I0;I3L1U9;E7EQV5;Q5T8M8;A6NL76;B4DW52;P68133;P68032;Q5T8M7;F5H1C1;P63267;P62736;C9JUM1;C9JZR7;C9JTX5;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;I3L4N8;E9PG30;Q6S8J3;P0CG38;A5A3E0;F8WCH0;Q9BYX7 ACTG1;ACTB;ACTA1;ACTC1;ACTG2;ACTA2;POTEE;POTEI;POTEF;POTEKP Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member I;POTE ankyrin domain family member F;Putative beta-actin-like protein 3 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 127.89 118.39 3 3.2564E-42 8 77035 20150910_Q1_SA_NiHu_Masterprac_group10_C 135.55 116.94 56819000 17615000 3392600 11629000 2023900 8459100 13700000 895 164 878 4066;4067;4068;4069;4070;4071 2818;2819;2820;2821;2822;2823;2824;2825 2824 8 AVGASFPLYEPAKMKTPVQYSQQQNSPQK Oxidation (M) 3237.6128 0.61284807 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 1 2 By matching By matching By matching By MS/MS By matching By matching 1 130.87 130.87 4 0.0003788 1 83816 20150910_Q1_SA_NiHu_Masterprac_group13_B 47.175 27.64 3458100 0 0 0 3458100 0 0 896 919 879 4072 2826 2826 104 1 AVGASFPLYEPAKMKTPVQYSQQQNSPQK Unmodified 3221.6179 0.61793345 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 132.6 126.7 4 1.2187E-19 5 85425 20150910_Q1_SA_NiHu_Masterprac_group13_B 74.287 60.955 84318000 0 5905600 30931000 17159000 0 30322000 897 919 879 4073;4074;4075;4076 2827;2828;2829;2830;2831 2827 5 AVGKDNFTLIPEGTNGTEER Unmodified 2147.0495 0.049475973 118 B4DR31;Q16555 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 130.81 130.51 3 6.3315E-11 1 83832 20150910_Q1_SA_NiHu_Masterprac_group10_B 91.547 63.832 11878000 0 7215100 0 4662800 0 0 898 118 880 4077;4078 2832 2832 1 AVGSPLCVPAR Unmodified 1125.5965 0.59646314 1564 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 111.05 102.07 2 0.012301 2 69485 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.166 42.136 4766400 476280 900410 246490 0 0 3143300 899 1564 881 4079;4080;4081;4082 2833;2834 2833 2 AVHGVEETSSEVKPPNE Unmodified 1807.8588 0.85882166 1256 Q7Z6I8 C5orf24 UPF0461 protein C5orf24 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 2 1 2 3 85.233 78.195 3 0.031005 3 53598 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.645 26.105 7937100 1849200 1238500 0 0 1101100 3748300 900 1256 882 4083;4084;4085;4086;4087;4088;4089;4090 2835;2836;2837 2835 1 AVICAGLYPK Unmodified 1090.5845 0.58450147 502 Q9H2U1-3;Q9H2U1-2;F5GZS0;Q9H2U1;E7EWK3 DHX36 Probable ATP-dependent RNA helicase DHX36 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 123.35 113.87 2 0.0059401 5 75548 20150910_Q1_SA_NiHu_Masterprac_group10_C 86.136 62.147 19619000 4154300 2064000 5642200 1288100 1079200 5391400 901 502 883 4091;4092;4093;4094;4095;4096 2838;2839;2840;2841;2842 2842 5 AVKEEGQDPDEIGIELEATSK Unmodified 2257.0962 0.096151394 1097 Q14151;A8MXT5;C9JPX0;B4DU53;F5GXS4 SAFB2 Scaffold attachment factor B2 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 132.3 124.46 3 6.9046E-59 2 78591 20150910_Q1_SA_NiHu_Masterprac_group10_C 114.87 84.73 24015000 19882000 0 0 4132700 0 0 902 1097 884 4097;4098 2843;2844 2844 2 AVKEEGQDPDEIGIELEATSKK Unmodified 2385.1911 0.19111441 1097 Q14151;A8MXT5;C9JPX0;B4DU53;F5GXS4 SAFB2 Scaffold attachment factor B2 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 129.24 119.74 3 3.271E-91 3 77125 20150910_Q1_SA_NiHu_Masterprac_group10_C 126.26 106.92 24404000 5926400 622630 4273800 1024400 7552900 5003900 903 1097 885 4099;4100;4101;4102;4103;4104 2845;2846;2847 2847 3 AVKEEQVQQLR Unmodified 1326.7256 0.72556306 1678 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 2 25.86 23.728 3 0.0062402 1 16224 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.552 21.069 44047000 0 0 0 5873900 215280 37958000 + 904 1678 886 4105;4106;4107;4108 2848 2848 1 AVLAAASPYFHDK Unmodified 1388.7089 0.70885036 1373 Q96C00 ZBTB9 Zinc finger and BTB domain-containing protein 9 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 2 1 2 125.06 116.47 2;3 4.4197E-35 7 76499 20150910_Q1_SA_NiHu_Masterprac_group10_C 123.95 85.166 58592000 23362000 4107800 8796800 5350200 3255000 13720000 905 1373 887 4109;4110;4111;4112;4113;4114;4115;4116;4117 2849;2850;2851;2852;2853;2854;2855 2855 7 AVLFCLSEDK Unmodified 1180.5798 0.57981002 461 E9PP50;P23528;G3V1A4;E9PK25;E9PQB7;E9PLJ3;E9PS23 CFL1 Cofilin-1 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 133.49 133.19 2 3.0574E-77 3 86682 20150910_Q1_SA_NiHu_Masterprac_group13_B 151.83 134.31 53775000 0 40675000 0 13101000 0 0 906 461 888 4118;4119 2856;2857;2858 2856 3 AVLFCLSEDKK Unmodified 1308.6748 0.67477304 461 E9PP50;P23528;G3V1A4;E9PK25;E9PQB7;E9PLJ3;E9PS23 CFL1 Cofilin-1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 123.26 120.58 3 0.002254 2 81647 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.288 61.698 9053300 0 5410700 0 0 0 3642600 907 461 889 4120;4121 2859;2860 2859 2 AVLIAGQPGTGK Unmodified 1110.6397 0.63970816 1627 Q9Y230;B3KQ59 RUVBL2 RuvB-like 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 89.195 81.499 2 0.020831 4 62378 20150910_Q1_SA_NiHu_Masterprac_group13_C 51.612 16.07 17967000 1675200 1315600 1095700 1465800 5751200 6663200 908 1627 890 4122;4123;4124;4125;4126;4127 2861;2862;2863;2864 2861 4 AVLLAGPPGTGK Unmodified 1079.6339 0.63389451 1629 Q9Y265;Q9Y265-2;E7ETR0 RUVBL1 RuvB-like 1 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 112.57 103.54 2 0.0040203 3 70535 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.326 24.45 22674000 2791500 2413800 2622700 2513600 466150 11867000 909 1629 891 4128;4129;4130;4131;4132;4133 2865;2866;2867 2866 3 AVLLETTLGDVVIDLYTEERPR Acetyl (Protein N-term) 2543.3483 0.34828376 1339 Q8WUA2 PPIL4 Peptidyl-prolyl cis-trans isomerase-like 4 yes yes 1 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 1 1 1 135.77 122.2 2;3 1.0842E-133 7 88822 20150910_Q1_SA_NiHu_Masterprac_group10_B 142.58 126.94 185720000 133750000 27279000 6090100 0 18605000 0 910 1339 892 4134;4135;4136;4137;4138 2868;2869;2870;2871;2872;2873;2874 2871 6 AVLLGPPGAGK Unmodified 978.58622 0.58621603 393 G3V213;F8VZG5;P54819-3;E7EWH4;P54819-5;P54819-2;F8W1A4;P54819;F8VPP1;F8VY04 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 116.47 98.849 2 0.01513 1 71224 20150910_Q1_SA_NiHu_Masterprac_group15_C 59.067 23.623 946980 0 0 227280 0 719700 0 911 393 893 4139;4140 2875 2875 1 AVLQSMSGRENATNGVQQLSK Unmodified 2217.1172 0.11717838 1578 Q9P2D1 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 116.19 106.14 3 0.0019774 3 72855 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.404 50.404 9038500 0 1513300 1887600 0 2120700 3516900 912 1578 894 4141;4142;4143;4144 2876;2877;2878 2878 3 AVLSTDVQNTPVNLQTSSK Unmodified 2001.0378 0.037848654 1371 Q96BD5-2;Q96BD5;Q96BD5-3 PHF21A PHD finger protein 21A yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 130.92 130.32 2 4.3441E-295 1 83740 20150910_Q1_SA_NiHu_Masterprac_group10_B 176.11 135.64 12035000 0 12035000 0 0 0 0 913 1371 895 4145 2879 2879 1 AVLTGTKDTVSTGLTGAVNVAK Unmodified 2102.1583 0.15829814 1413 Q96Q06-2;Q96Q06 PLIN4 Perilipin-4 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.27 130.67 3 0.021502 1 84130 20150910_Q1_SA_NiHu_Masterprac_group10_B 34.819 20.714 14273000 0 14273000 0 0 0 0 914 1413 896 4146 2880 2880 1 AVLVQFSNGK Unmodified 1061.5869 0.58694431 1475 Q9GZS1-2;B4DW33 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 113.21 104.19 2 0.0027701 4 71090 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.597 62.445 9893900 823560 1431800 630340 689060 998860 5320200 915 1475 897 4147;4148;4149;4150;4151;4152 2881;2882;2883;2884 2881 4 AVNAMILAGK Unmodified 986.55829 0.55828672 1595 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 121.48 111.88 2 0.0029844 6 76375 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.598 49.828 14785000 3008300 1367500 2833300 2437100 889050 4249300 916 1595 898 4153;4154;4155;4156;4157;4158 2885;2886;2887;2888;2889;2890 2886 6 AVPGTEVPGHK Unmodified 1090.5771 0.57710791 27 F5H101;Q76FK4-2;Q76FK4-4;A6NJK7;Q76FK4;F8WE42;Q76FK4-3;F5GWN9;F5H540;F5H797;F5H8B8;F5H692 NOL8 Nucleolar protein 8 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 55.357 48.104 2 0.0067259 5 40610 20150910_Q1_SA_NiHu_Masterprac_group13_C 69.65 38.964 7268200 1140900 904820 2210800 0 1427500 1584200 917 27 899 4159;4160;4161;4162;4163;4164 2891;2892;2893;2894;2895 2891 5 AVPLTVAK Unmodified 797.50109 0.50108942 1389 Q96GM8;B4DEM6 TOE1 Target of EGR1 protein 1 yes no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 86.228 75.283 1 0.0061027 2 52060 20150910_Q1_SA_NiHu_Masterprac_group13_B 72.789 24.228 4904400 0 0 2929600 840810 1134000 0 918 1389 900 4165;4166;4167 2896;2897 2896 2 AVPYPQR Unmodified 829.44464 0.44463717 290 CON__P02666 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 59.823 54.743 2 0.040612 1 38896 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.374 20.653 15753000 0 0 8975400 2055100 0 4722000 + 919 290 901 4168;4169;4170 2898 2898 1 AVQDLCGWR Unmodified 1103.5182 0.51821282 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 116.26 107.09 2 0.036278 1 70596 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.691 24.142 16783000 1946400 3079600 1317400 1734800 3613400 5091000 920 1575 902 4171;4172;4173;4174;4175;4176 2899 2899 1 AVQDLCGWRIR Unmodified 1372.7034 0.70338783 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 130.58 130.28 3 0.0033 1 83570 20150910_Q1_SA_NiHu_Masterprac_group13_B 83.647 51.031 12818000 0 4759200 0 8059300 0 0 921 1575 903 4177;4178 2900 2900 1 AVQEIMQEK Unmodified 1074.5379 0.53794521 239 C9JBJ1;C9JTV6;F8WD69;P22102-2;P22102;H7C366 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 74.225 71.091 2 0.015314 3 49345 20150910_Q1_SA_NiHu_Masterprac_group10_B 76.1 29.71 8650800 886180 2206600 0 699640 0 4858400 922 239 904 4179;4180;4181;4182 2901;2902;2903 2901 3 AVQGSGDTSRHCLPTLADAK Unmodified 2083.0117 0.011650679 535 Q96RL1;F8VQY2;Q96RL1-3;F2Z2T8 UIMC1 BRCA1-A complex subunit RAP80 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 2 2 2 98.68 88.247 3;4 0.0067438 3 59627 20150910_Q1_SA_NiHu_Masterprac_group10_B 43.955 26.98 13759000 1028300 2229600 2255200 0 1963300 6282200 923 535 905 4183;4184;4185;4186;4187;4188;4189;4190 2904;2905;2906 2905 3 AVRAALGVLGPEVEK Unmodified 1507.8722 0.8722273 771 O95382-3;O95382 MAP3K6 Mitogen-activated protein kinase kinase kinase 6 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 133.64 133.34 3 0.002474 1 86812 20150910_Q1_SA_NiHu_Masterprac_group13_B 59.75 13.339 64554000 0 51794000 0 12760000 0 0 924 771 906 4191;4192 2907 2907 1 AVSDWIDEQEK Unmodified 1318.6041 0.60411052 243 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;C9JFV5;Q12906;G5E9M5;B4DFG4 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 119.91 117.22 2 0.00076431 3 79543 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.363 74.704 5449300 0 3150600 0 0 0 2298700 925 243 907 4193;4194 2908;2909;2910 2909 3 AVSEEQQPALKGK Unmodified 1383.7358 0.73579339 1321;411 E9PC67;F8VQZ0;Q5STZ8;F5GYK6;Q8NE71;Q8NE71-2 ABCF1 ATP-binding cassette sub-family F member 1 no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 2 2 2 50.933 45.088 2;3 1.6874E-24 7 37469 20150910_Q1_SA_NiHu_Masterprac_group15_C 117.86 87.72 73837000 8476700 9982500 12867000 9254400 14596000 18660000 926 411;1321 908 4195;4196;4197;4198;4199;4200;4201;4202;4203;4204;4205 2911;2912;2913;2914;2915;2916;2917 2915 7 AVSGASAGDYSDAIETLLTAIAVIK Unmodified 2435.2795 0.27953549 484 F5GWE6;F5H669;Q8N684-2;Q8N684;Q8N684-3 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 2 2 1 134.56 127.11 2;3 4.6604E-163 4 85652 20150910_Q1_SA_NiHu_Masterprac_group13_C 141.7 115.64 72789000 0 22762000 45201000 4826400 0 0 927 484 909 4206;4207;4208;4209;4210 2918;2919;2920;2921 2918 4 AVSISTEPPTYLREQK Unmodified 1817.9523 0.95232811 592 Q12824-2;Q12824;G5E975;C9JTA6 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 121.57 118.84 3 0.01504 1 80780 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.682 26.611 5197100 0 1134800 0 0 0 4062300 928 592 910 4211;4212 2922 2922 1 AVSQSRNEMGIPQQTTSPENAGPQNTK Unmodified 2869.3624 0.36244705 42 A8MTM6;Q15398;Q15398-1 DLGAP5 Disks large-associated protein 5 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 98.737 91.077 3 0.0015083 3 62256 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.208 35.448 23964000 0 4457600 6091400 4549400 3752100 5113300 929 42 911 4213;4214;4215;4216;4217 2923;2924;2925 2923 3 AVSTVVVTTAPSPK Unmodified 1355.766 0.76603089 1225 Q6P4R8-3;Q6P4R8;Q6P4R8-2 NFRKB Nuclear factor related to kappa-B-binding protein yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 109.07 97.489 2 0.0018066 2 65229 20150910_Q1_SA_NiHu_Masterprac_group10_C 67.095 40.983 839520 839520 0 0 0 0 0 930 1225 912 4218 2926;2927 2927 2 AVSVTPIRDTK Acetyl (Protein N-term) 1227.6823 0.68230126 263 Q9NR56-3;Q9NR56-4;E9PBW7;Q9NR56-6;C9JP00;Q9NR56-2;Q9NR56-5;Q9NR56 MBNL1 Muscleblind-like protein 1 yes no 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 106.84 98.144 2 2.8681E-128 6 66638 20150910_Q1_SA_NiHu_Masterprac_group15_B 166.29 95.878 46791000 5912300 7271400 5500000 3716100 10458000 13934000 931 263 913 4219;4220;4221;4222;4223;4224 2928;2929;2930;2931;2932;2933 2930 6 AVTAIMTR Unmodified 861.47422 0.47422274 476 H0Y4W2;Q9Y4A5-2;F2Z2U4;Q9Y4A5 TRRAP Transformation/transcription domain-associated protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 83.988 75.34 2 0.034579 1 52127 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.812 23.148 1533900 0 0 0 0 452030 1081800 932 476 914 4225;4226 2934 2934 1 AVTEQGAELSNEER Unmodified 1531.7114 0.71142914 883 P27348;E9PG15 YWHAQ 14-3-3 protein theta yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 72.509 67.508 2 0.0011059 2 47416 20150910_Q1_SA_NiHu_Masterprac_group10_B 76.01 52.298 3668100 0 713300 0 197590 1433200 1324000 933 883 915 4227;4228;4229;4230 2935;2936 2936 2 AVTEVLAR Unmodified 857.49707 0.49706667 1435 Q99961;E7EVZ4 SH3GL1 Endophilin-A2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 82.738 75.176 2 0.028888 1 52080 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.877 18.941 5681000 622700 883190 1037000 685020 908790 1544200 934 1435 916 4231;4232;4233;4234;4235;4236 2937 2937 1 AVTIANSPSKPSEK Unmodified 1427.762 0.76200815 1322 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 58.368 52.217 2;3 1.2736E-12 9 36779 20150910_Q1_SA_NiHu_Masterprac_group13_B 102.33 60.852 10458000 1159000 1423100 1385800 1179000 2585400 2725900 935 1322 917 4237;4238;4239;4240;4241;4242;4243;4244;4245;4246;4247;4248;4249 2938;2939;2940;2941;2942;2943;2944;2945;2946 2939 9 AVVGVVAGGGRIDKPILK Unmodified 1748.0672 0.06723871 456 E9PKZ0;P62917;E9PIZ3;E9PKU4;E9PP36 RPL8 60S ribosomal protein L8 yes no 0 0 2 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 2 1 126.99 116.32 3;4 0.0015183 5 76357 20150910_Q1_SA_NiHu_Masterprac_group10_C 72.315 64.856 34616000 8973300 1062000 2848000 1386300 17574000 2771900 936 456 918 4250;4251;4252;4253;4254;4255;4256 2947;2948;2949;2950;2951 2951 4 AVVVCPKDEDYKQR Unmodified 1705.8458 0.84575455 1022;1023 Q00839;B3KX72;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 1 2 1 2 67.492 61.676 3;4 0.00072164 9 43209 20150910_Q1_SA_NiHu_Masterprac_group13_B 86.288 70.262 30683000 6377800 6133400 2724500 3005500 2160200 10282000 937 1022;1023 919 4257;4258;4259;4260;4261;4262;4263;4264;4265;4266;4267 2952;2953;2954;2955;2956;2957;2958;2959;2960 2954 9 AVVVPARSEALGK Unmodified 1295.7561 0.75613491 1447 Q9BTC0;Q9BTC0-1;Q9BTC0-2;Q9BTC0-3 DIDO1 Death-inducer obliterator 1 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 91.222 80.72 3 0.0020889 2 55481 20150910_Q1_SA_NiHu_Masterprac_group10_C 72.289 49.508 8505100 2337200 0 1924000 1235700 3008200 0 938 1447 920 4268;4269;4270;4271 2961;2962 2962 2 AVYQARPQLHK Unmodified 1309.7255 0.72550348 1105 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 58.016 51.541 3 0.021508 2 34923 20150910_Q1_SA_NiHu_Masterprac_group10_C 55.084 43.163 10786000 1009300 2070100 1529000 1582500 106880 4488600 939 1105 921 4272;4273;4274;4275;4276;4277 2963;2964 2964 2 AWEDYYK Unmodified 973.41815 0.41814765 1394 Q96I24 FUBP3 Far upstream element-binding protein 3 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 110.02 102 2 0.015859 1 69572 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.369 89.369 5146300 0 763270 1147500 625820 295540 2314200 940 1394 922 4278;4279;4280;4281;4282 2965 2965 1 AWEDYYKK Unmodified 1101.5131 0.51311067 1394 Q96I24 FUBP3 Far upstream element-binding protein 3 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 92.704 84.908 2 0.0002861 1 58306 20150910_Q1_SA_NiHu_Masterprac_group15_B 115.49 91.262 21894000 2272100 2994000 3422100 1928100 3236600 8040800 941 1394 923 4283;4284;4285;4286;4287;4288 2966 2966 1 AWEEYYK Unmodified 987.4338 0.43379771 1366 Q92945-2;Q92945 KHSRP Far upstream element-binding protein 2 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 2 1 106.15 96.129 1;2 4.6188E-90 7 64175 20150910_Q1_SA_NiHu_Masterprac_group13_B 162.51 119.45 463830000 35391000 62756000 72094000 41600000 92441000 159540000 942 1366 924 4289;4290;4291;4292;4293;4294;4295;4296;4297;4298;4299 2967;2968;2969;2970;2971;2972;2973 2967 7 AWEEYYKK Unmodified 1115.5288 0.52876073 1366 Q92945-2;Q92945 KHSRP Far upstream element-binding protein 2 no no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 85.457 77.878 2 3.4246E-117 5 60291 20150910_Q1_SA_NiHu_Masterprac_group13_C 170.3 117.89 640530000 45865000 62434000 128530000 67808000 179850000 156050000 943 1366 925 4300;4301;4302;4303;4304;4305 2974;2975;2976;2977;2978 2975 5 AWEEYYKKIGQQPQQPGAPPQQDYTK Unmodified 3077.4883 0.48829949 1366 Q92945-2;Q92945 KHSRP Far upstream element-binding protein 2 yes no 0 0 2 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 130.99 123.14 4 0.005089 2 83460 20150910_Q1_SA_NiHu_Masterprac_group13_B 37.034 21.481 10341000 6932500 0 0 3408800 0 0 944 1366 926 4306;4307 2979;2980 2979 2 AWLVSSGCPLQVKK Unmodified 1571.8494 0.84938336 1284 Q8IX01-4;Q8IX01-3;Q8IX01;E7ETX7 SUGP2 SURP and G-patch domain-containing protein 2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.7 131.1 3 0.0023013 1 84536 20150910_Q1_SA_NiHu_Masterprac_group10_B 83.137 44.122 0 0 0 0 0 0 0 945 1284 927 4308 2981 2981 1 AWNNQVCCK Unmodified 1178.4961 0.49609717 18 A6NEM2;P51610-2;P51610;P51610-3 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 65.79 58.713 2 0.010208 5 47394 20150910_Q1_SA_NiHu_Masterprac_group13_C 101.54 85.927 10438000 811770 2546900 2519900 537670 1248800 2773200 946 18 928 4309;4310;4311;4312;4313;4314 2982;2983;2984;2985;2986 2983 5 AWQGAMDAGAASR Unmodified 1290.5775 0.57751861 1097 Q14151 SAFB2 Scaffold attachment factor B2 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 92.878 85.049 2 0.00079741 5 63112 20150910_Q1_SA_NiHu_Masterprac_group15_C 89.507 61.863 20095000 635740 2437300 1696600 1222400 4767300 9335600 947 1097 929 4315;4316;4317;4318;4319;4320 2987;2988;2989;2990;2991 2990 4 AWSVARLSQKFPK Unmodified 1516.8514 0.85143227 294 CON__P02769 yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 130.69 119.69 3 1.089E-08 6 83293 20150910_Q1_SA_NiHu_Masterprac_group13_B 103.43 69.247 417280000 0 35300000 105410000 86120000 12741000 177720000 + 948 294 930 4321;4322;4323;4324;4325;4326;4327 2992;2993;2994;2995;2996;2997 2992 6 AYAALAALEK Unmodified 1019.5651 0.56514624 243 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;C9JFV5;Q12906;G5E9M5;B4DFG4 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 131.96 126.07 2 0.0007944 4 84174 20150910_Q1_SA_NiHu_Masterprac_group10_B 105.4 54.924 51053000 0 14930000 8279500 6096200 0 21747000 949 243 931 4328;4329;4330;4331 2998;2999;3000;3001 3001 4 AYADSYYYEDGGMKPR Unmodified 1884.7989 0.79886394 1277 Q8IVM0 CCDC50 Coiled-coil domain-containing protein 50 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 109.2 101.68 3 0.029586 2 69358 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.995 27.652 3429100 0 556110 835160 0 0 2037800 950 1277 932 4332;4333;4334 3002;3003 3003 1 AYCEGCYVATLEK Unmodified 1562.6745 0.67451505 1145 Q15654 TRIP6 Thyroid receptor-interacting protein 6 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 127.25 115.89 2 1.1319E-59 4 81610 20150910_Q1_SA_NiHu_Masterprac_group13_C 131.06 98.2 25027000 8065000 2353400 8185800 0 2794000 3628800 951 1145 933 4335;4336;4337;4338;4339 3004;3005;3006;3007 3004 4 AYCVLVTGPNMGGK Unmodified 1465.7058 0.70575559 959 P52701;B4DF41;F5H2F9 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 132.68 115.84 2 0.0017836 3 78628 20150910_Q1_SA_NiHu_Masterprac_group10_C 67.234 42.22 22692000 13715000 0 8977500 0 0 0 952 959 934 4340;4341;4342 3008;3009;3010 3010 3 AYDIAGSTKDVK Unmodified 1266.6456 0.6455814 655 P11388;H7BXX8;P11388-2;P11388-3;P11388-4;C9J5P2;H7BXH5 TOP2A DNA topoisomerase 2-alpha yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 69.638 68.483 2 0.022995 1 47618 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.08 33.964 670920 0 0 0 0 0 670920 953 655 935 4343 3011 3011 1 AYDLAGSCRGVK Unmodified 1295.6292 0.62921983 1035 Q02880-2;Q02880;E9PCY5 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 2 2 1 2 72.188 66.344 2;3 0.001292 8 46390 20150910_Q1_SA_NiHu_Masterprac_group10_B 91.701 72.602 7675400 0 2062100 2028500 760360 0 2824500 954 1035 936 4344;4345;4346;4347;4348;4349;4350 3012;3013;3014;3015;3016;3017;3018;3019 3017 8 AYEMLSDPVK Unmodified 1151.5533 0.55326092 1426 Q99543;Q99543-2;H7C3L7;C9IZ83;F5H621 DNAJC2 DnaJ homolog subfamily C member 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 1 119.33 117.79 2 0.019099 2 76217 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.374 28.466 2445800 0 902790 0 325920 0 1217100 955 1426 937 4351;4352;4353;4354 3020;3021 3021 2 AYERNELFLPGR Unmodified 1463.7521 0.75211216 1071 Q13123;Q9H4P6;E7EQZ7 IK Protein Red yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 122.74 120.06 3 0.0021825 1 77153 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.819 50.585 2247600 0 590080 0 0 0 1657500 956 1071 938 4355;4356 3022 3022 1 AYEVLKDEDLR Unmodified 1349.6827 0.68269519 1287 Q8IXB1;Q8IXB1-2;F8W884;Q3B7W8;E7EP04;Q71S60 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 109.56 100.65 3 0.023823 1 73683 20150910_Q1_SA_NiHu_Masterprac_group13_C 53.567 22.743 7670300 581670 1509000 1570700 0 0 4008900 957 1287 939 4357;4358;4359;4360 3023 3023 1 AYEVLKDEDLRK Unmodified 1477.7777 0.77765821 1287 Q8IXB1;Q8IXB1-2;F8W884;Q3B7W8;E7EP04;Q71S60 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 91.267 84.984 3 0.0056339 2 58242 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.014 41.569 10288000 0 0 2184100 2010600 0 6093700 958 1287 940 4361;4362;4363 3024;3025 3025 2 AYFDVKEYDR Unmodified 1304.6037 0.60371659 1598 Q9UJX2;Q9UJX2-2 CDC23 Cell division cycle protein 23 homolog yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 115.07 107.63 3 0.011065 1 76102 20150910_Q1_SA_NiHu_Masterprac_group15_C 72.243 57.57 2823600 0 533380 0 0 1177400 1112800 959 1598 941 4364;4365;4366 3026 3026 1 AYGPYTPQPQPK Unmodified 1345.6667 0.6666512 1065 Q12948;A3KPE3 FOXC1 Forkhead box protein C1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 91.644 82.706 2 0.0008989 6 63029 20150910_Q1_SA_NiHu_Masterprac_group13_C 92.943 66.963 44349000 6761300 8399900 5308800 3271600 6280600 14327000 960 1065 942 4367;4368;4369;4370;4371;4372;4373 3027;3028;3029;3030;3031;3032 3028 6 AYHLVCLDPELDRAPEGK Unmodified 2082.0204 0.020424451 430 Q12873;E9PG89;Q12873-2;H7C2H0 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 132.43 114.43 4 0.0018994 1 83296 20150910_Q1_SA_NiHu_Masterprac_group13_C 54.811 31.826 19263000 0 0 19263000 0 0 0 961 430 943 4374 3033 3033 1 AYHMVCLDPDMEKAPEGK Unmodified 2089.9271 0.92711769 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 127.51 117.14 3;4 7.735E-14 4 81379 20150910_Q1_SA_NiHu_Masterprac_group13_C 97.823 54.781 43618000 0 1815800 30607000 0 0 11195000 962 486 944 4375;4376;4377;4378 3034;3035;3036;3037 3035 4 AYHMVCLDPDMEKAPEGK Oxidation (M) 2105.922 0.92203231 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 1 1 By matching By matching By matching By matching By matching By MS/MS 2 1 2 106.48 101.06 4 0.015865 2 67772 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.768 46.772 5194200 0 1649900 461830 0 0 3082500 963 486 944 4379;4380;4381;4382;4383 3038;3039 3038 54;55 1 AYHNSPAYLAYINAK Unmodified 1694.8417 0.84165545 85 C0IMW5;B4DFR4;Q969G3-2;B4DGM3;Q969G3 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.16 130.55 3 8.9849E-06 1 83956 20150910_Q1_SA_NiHu_Masterprac_group10_B 92.265 66.283 15818000 0 15818000 0 0 0 0 964 85 945 4384 3040 3040 1 AYHPHCFTCVMCHR Unmodified 1874.7586 0.758553 1367 Q93052 LPP Lipoma-preferred partner yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 86.538 80.389 4 0.011336 1 55094 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.712 29.846 4580600 0 0 720470 449340 0 3410800 965 1367 946 4385;4386;4387 3041 3041 1 AYLAYCTPGSDGQAATLK Unmodified 1885.888 0.88801329 1480 Q9H0J9 PARP12 Poly [ADP-ribose] polymerase 12 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 130.99 126.02 2 0.0068361 1 85785 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.477 42.689 0 0 0 0 0 0 0 966 1480 947 4388 3042 3042 1 AYLEEECPATLRK Unmodified 1578.7712 0.77119262 874 P25311;C9JEV0 AZGP1 Zinc-alpha-2-glycoprotein yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 2 103.02 93.416 2;3 0.0011549 2 69574 20150910_Q1_SA_NiHu_Masterprac_group13_C 70.089 70.089 5959200 0 2822900 3136300 0 0 0 967 874 948 4389;4390;4391 3043;3044 3043 2 AYNRFYLLTK Unmodified 1287.6976 0.69755739 977 P58317 ZNF121 Zinc finger protein 121 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 130.72 130.72 3 0.0063436 1 83691 20150910_Q1_SA_NiHu_Masterprac_group13_B 85.807 61.342 9718300 0 0 0 9718300 0 0 968 977 949 4392 3045 3045 1 AYPLADAHLTK Unmodified 1198.6346 0.63462279 969 P55769;B1AHD1 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 2 2 2 2 105.25 96.55 2;3 0.0025808 10 64889 20150910_Q1_SA_NiHu_Masterprac_group10_C 84.31 67.593 103720000 24246000 14420000 9649900 8286100 22204000 24918000 969 969 950 4393;4394;4395;4396;4397;4398;4399;4400;4401;4402;4403;4404;4405;4406 3046;3047;3048;3049;3050;3051;3052;3053;3054;3055 3055 10 AYPNKGVGQANKPDETSK Unmodified 1902.9436 0.94355434 1118 Q14966-3;Q14966;Q14966-5;F5H6M8;E7EUZ3 ZNF638 Zinc finger protein 638 yes no 0 0 2 By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 2 2 2 2 2 44.101 38.795 3;4 0.0014835 4 27257 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.821 44.825 46899000 6120600 8607800 8441000 5191700 8165200 10373000 970 1118 951 4407;4408;4409;4410;4411;4412;4413;4414;4415;4416;4417;4418 3056;3057;3058;3059 3058 4 AYPNNYETMK Unmodified 1229.5387 0.53867349 1229 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 81.473 73.945 2 0.039111 1 57948 20150910_Q1_SA_NiHu_Masterprac_group13_C 53.597 36.124 5888600 323630 1003600 2055400 270110 1262700 973220 971 1229 952 4419;4420;4421;4422;4423;4424 3060 3060 1 AYQDRLAYLR Unmodified 1267.6673 0.6673199 929 P46940;H0YLE8 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 106.1 102.64 3 0.032889 1 70115 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.432 34.404 1475100 0 0 0 0 0 1475100 972 929 953 4425 3061 3061 1 AYQKQPTIFQNK Unmodified 1464.7725 0.77251325 989 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 88.26 77.545 3 0.020354 1 58577 20150910_Q1_SA_NiHu_Masterprac_group15_C 51.998 35.526 4305700 671900 0 505610 0 1349500 1778600 973 989 954 4426;4427;4428;4429 3062 3062 1 AYQKQPTIFQNKK Unmodified 1592.8675 0.86747627 989 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 67.209 60.032 3 9.4367E-05 4 42526 20150910_Q1_SA_NiHu_Masterprac_group13_B 96.334 81.902 29751000 3614300 5122300 3878200 2797500 8513400 5825300 974 989 955 4430;4431;4432;4433;4434;4435 3063;3064;3065;3066 3063 3 AYSLGRAEYGRLGLGEGAEEK Unmodified 2225.1077 0.10765955 271 C9JW69;P18754;P18754-2 RCC1 Regulator of chromosome condensation yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 2 1 1 130.82 115.95 3;4 8.3126E-33 4 81640 20150910_Q1_SA_NiHu_Masterprac_group13_C 105.5 84.648 84777000 19530000 0 36905000 0 8809300 19533000 975 271 956 4436;4437;4438;4439;4440 3067;3068;3069;3070 3068 4 AYSPTCSPTLGFK Unmodified 1427.6755 0.67550132 1199 Q5TGY3 AHDC1 AT-hook DNA-binding motif-containing protein 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 129.15 128.54 2 0.0030117 1 82243 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.224 51.486 1056100 0 1056100 0 0 0 0 976 1199 957 4441 3071 3071 1 AYTSETYLMK Unmodified 1205.5638 0.56382561 555 Q8TF68-3;F8W6Q3;Q8TF68-2;Q8TF68;Q5T0B9 ZNF384;ZNF362 Zinc finger protein 384;Zinc finger protein 362 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 111.21 102.29 2 3.5969E-05 3 74548 20150910_Q1_SA_NiHu_Masterprac_group13_C 109.83 99.352 36301000 4534600 2539600 3545300 6246800 8892100 10543000 977 555 958 4442;4443;4444;4445;4446;4447 3072;3073;3074 3072 3 AYVTKSPVDAGK Unmodified 1234.6558 0.65575216 1377 Q96DG6 CMBL Carboxymethylenebutenolidase homolog yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 2 61.869 56.253 2;3 0.0056117 2 39858 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.864 47.943 2545300 0 0 0 0 156670 2388600 978 1377 959 4448;4449;4450 3075;3076 3076 2 CAACQNPRKQSLPATSIPTPASFK Unmodified 2629.3105 0.31047524 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 131.68 115.99 3 0.0069627 1 77323 20150910_Q1_SA_NiHu_Masterprac_group10_C 50.189 40.809 2589900 2589900 0 0 0 0 0 979 945 960 4451 3077 3077 1 CAADVKAPLEVAQEH Unmodified 1636.7879 0.78790532 339 E5RH70;H0YBB9;O94903 PROSC Proline synthase co-transcribed bacterial homolog protein yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 1 107.9 102.43 3 1.4611E-05 4 69982 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.307 72.02 8590400 1515200 1708000 1208200 2297400 0 1861500 980 339 961 4452;4453;4454;4455;4456;4457;4458 3078;3079;3080;3081 3080 4 CAECGKGFGDSSAR Unmodified 1500.6086 0.60856075 1408 Q96MX3 ZNF48 Zinc finger protein 48 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 2 42.191 37.679 3 0.0026211 2 30350 20150910_Q1_SA_NiHu_Masterprac_group13_C 63.185 58.991 5376100 650050 681310 1269200 738560 718640 1318300 981 1408 962 4459;4460;4461;4462;4463;4464;4465 3082;3083 3082 2 CAECGKGFGDSSARIK Unmodified 1741.7876 0.78758774 1408 Q96MX3 ZNF48 Zinc finger protein 48 yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 63.102 55.181 4 0.0030083 4 38764 20150910_Q1_SA_NiHu_Masterprac_group13_B 53.395 38.821 7803400 839300 981610 1285400 3389500 1307500 0 982 1408 963 4466;4467;4468;4469;4470 3084;3085;3086;3087 3084 3 CAEIDREMISSLGVSK Unmodified 1793.8652 0.86516936 1362 Q92878-2;Q92878;E7EN38;E7ESD9;C9JNH8 RAD50 DNA repair protein RAD50 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 132.47 132.47 3 2.5881E-37 1 85489 20150910_Q1_SA_NiHu_Masterprac_group13_B 113.52 84.971 3931500 0 0 0 3931500 0 0 983 1362 964 4471 3088 3088 1 CAESLQPVAAAVEER Unmodified 1628.7828 0.78281994 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 131.84 114.09 2 0.010246 2 83651 20150910_Q1_SA_NiHu_Masterprac_group13_B 67.136 46.128 1507700 0 0 0 0 1507700 0 984 1325 965 4472;4473 3089;3090 3089 1 CAGCTNPISGLGGTK Unmodified 1491.681 0.68099741 1101 Q14192 FHL2 Four and a half LIM domains protein 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 111.44 100.24 2 0.008098 1 68215 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.899 33.737 3051900 340130 0 0 0 680130 2031600 985 1101 966 4474;4475;4476 3091 3091 1 CAPMSDLTDLK Unmodified 1249.5683 0.56825906 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 131.63 123.37 2 0.0020528 4 83798 20150910_Q1_SA_NiHu_Masterprac_group13_B 89.266 67.595 352190000 0 169250000 42110000 16579000 34638000 89610000 986 919;920 967 4477;4478;4479;4480;4481 3092;3093;3094;3095 3092 4 CASQSGMTAYGTR Unmodified 1388.5813 0.58128336 80 E7ENR3;B4DDF4;Q99439;B4DUT8;H3BTZ5;Q99439-2;H3BVI6;H3BQH0 CNN2 Calponin-2 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 63.371 56.741 2 0.0090312 2 45816 20150910_Q1_SA_NiHu_Masterprac_group13_C 56.569 18.956 4287000 415520 773970 710150 0 0 2387300 987 80 968 4482;4483;4484;4485 3096;3097 3096 2 CASQSGMTAYGTRR Unmodified 1544.6824 0.68239439 80 E7ENR3;B4DDF4;Q99439;B4DUT8;H3BTZ5;Q99439-2;H3BVI6;H3BQH0 CNN2 Calponin-2 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 54.752 48.56 3 0.0013411 2 34782 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.091 8.7487 14273000 1031400 1920000 2292600 1126800 1590700 6311400 988 80 969 4486;4487;4488;4489;4490;4491 3098;3099 3099 2 CASQVGMTAPGTR Unmodified 1334.6071 0.60710418 80 E7ENR3;B4DDF4;Q99439;B4DUT8;H3BTZ5;Q99439-2 CNN2 Calponin-2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 76.237 65.275 2 1.7506E-34 1 45571 20150910_Q1_SA_NiHu_Masterprac_group15_B 120.9 84.367 4818500 0 0 595900 0 780480 3442100 989 80 970 4492;4493;4494 3100 3100 1 CASQVGMTAPGTRR Unmodified 1490.7082 0.70821521 80 E7ENR3;B4DDF4;Q99439;B4DUT8;H3BTZ5;Q99439-2 CNN2 Calponin-2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 1 1 1 1 61.913 54.084 3 0.0030466 5 38979 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.196 38.111 8782300 1625400 1903600 1900800 1251200 2101400 0 990 80 971 4495;4496;4497;4498;4499;4500 3101;3102;3103;3104;3105 3103 5 CASQVGMTAPGTRRHIYDTK Unmodified 2248.0841 0.084104115 80 E7ENR3;B4DDF4;Q99439;B4DUT8;H3BTZ5;Q99439-2 CNN2 Calponin-2 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 3 3 3 2 3 79.777 73.016 3;4;5 0.014109 3 57627 20150910_Q1_SA_NiHu_Masterprac_group13_C 46.121 46.121 38099000 0 5464800 12596000 3790200 4783000 11465000 991 80 972 4501;4502;4503;4504;4505;4506;4507;4508;4509;4510;4511;4512;4513;4514 3106;3107;3108 3106 2 CATCSQPILDR Unmodified 1319.5962 0.59620515 1145 Q15654;H7BZE2 TRIP6 Thyroid receptor-interacting protein 6 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1 83.383 74.532 2 0.0049151 5 51769 20150910_Q1_SA_NiHu_Masterprac_group10_B 74.611 19.353 7490400 669690 1247900 1055600 355180 1103900 3058100 992 1145 973 4515;4516;4517;4518;4519;4520;4521 3109;3110;3111;3112;3113 3113 5 CATVSAAVAER Unmodified 1133.5499 0.54990688 1482 Q9H0U9 TSPYL1 Testis-specific Y-encoded-like protein 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 71.993 65.242 2 0.014934 1 45838 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.198 31.117 1914500 0 561160 470570 0 0 882790 993 1482 974 4522;4523;4524 3114 3114 1 CAVCGDNASCQHYGVR Unmodified 1852.7403 0.74031997 489 Q15627;P22736;P22736-2;F5GXF0;H3BT85 NR4A1 Nuclear receptor subfamily 4 group A member 1 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 71.078 62.79 3 0.0012038 3 49383 20150910_Q1_SA_NiHu_Masterprac_group15_C 76.01 72.53 2523600 385160 0 0 0 1011200 1127200 994 489 975 4525;4526;4527 3115;3116;3117 3116 3 CCAADDKEACFAVEGPK Unmodified 1926.791 0.79101814 294 CON__P02769 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 98.875 91.805 3 0.0035963 1 67204 20150910_Q1_SA_NiHu_Masterprac_group15_C 50.376 48.03 3464900 0 555250 0 0 755870 2153800 + 995 294 976 4528;4529;4530 3118 3118 1 CCAFNDTREEGK Unmodified 1485.5977 0.59766171 1598 Q9UJX2;Q9UJX2-3 CDC23 Cell division cycle protein 23 homolog yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 47.595 43.254 3 8.742E-12 2 30875 20150910_Q1_SA_NiHu_Masterprac_group10_B 107.11 87.271 6080300 997240 1278500 1138600 611950 0 2054000 996 1598 977 4531;4532;4533;4534;4535 3119;3120 3120 2 CCGCVFSER Unmodified 1173.4365 0.43653338 38 Q9BY42;A8MSH5;A2A2L5;A2A2L6 RTFDC1 Protein RTF2 homolog yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 86.713 70.447 2 0.00035419 1 54396 20150910_Q1_SA_NiHu_Masterprac_group15_C 111.46 105.42 14997000 0 0 5543800 0 9453600 0 997 38 978 4536;4537 3121 3121 1 CCNHPYLINGAEEK Unmodified 1703.7396 0.73957492 1578;1335;653 H7BXG5;Q9HCK8-2;Q9HCK8;H0YJG4;Q9P2D1;Q8TD26 CHD8;CHD7;CHD6 Chromodomain-helicase-DNA-binding protein 8;Chromodomain-helicase-DNA-binding protein 7;Chromodomain-helicase-DNA-binding protein 6 no no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 86.245 78.583 3 0.0085811 2 54177 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.806 43.516 10704000 1179400 2002100 1233900 931340 1709700 3647100 998 653;1578;1335 979 4538;4539;4540;4541;4542;4543 3122;3123 3122 2 CCSGAIIVLTK Unmodified 1220.6257 0.62571436 837 P14618;E9PF79;P14618-3 PKM Pyruvate kinase PKM yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 123.6 121.81 2 0.01109 1 82392 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.602 43.961 3998200 0 841590 0 640740 0 2515800 999 837 980 4544;4545;4546 3124 3124 1 CCTESLVNRRPCFSALTPDETYVPK Unmodified 2999.3939 0.39394687 294 CON__P02769 yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 132.63 132.33 4 1.1034E-12 2 85861 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.001 57.917 33707000 0 31481000 0 2225400 0 0 + 1000 294 981 4547;4548 3125;3126 3126 2 CCWCLCCGCEVR Unmodified 1718.5914 0.59141259 1263 Q86UT8;E9PJ16;E9PPT8 CCDC84 Coiled-coil domain-containing protein 84 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 129.98 125.02 2 0.0079543 1 84671 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.11 61.11 4585200 0 0 0 0 0 4585200 1001 1263 982 4549 3127 3127 1 CDDFVVNDTK Unmodified 1211.5129 0.51285267 628 Q6JHV3;H0YMI4;Q9Y6I4;B3KMX7;H0YLB7;H0YKU8;F5H1A6;H0YL81;B4DV65;H0YLG0 USP3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 88.599 81.139 2 0.010742 1 55696 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.531 57.852 6732900 0 1479500 770750 715360 1276200 2491000 1002 628 983 4550;4551;4552;4553;4554 3128 3128 1 CDFTEDQTAEFK Acetyl (Protein N-term) 1531.6137 0.61368893 552 F8W1R7;P60660-2;P60660;G3V1V0;F8VZV5;G8JLA2;B7Z6Z4;G3V1Y7 MYL6 Myosin light polypeptide 6 yes no 1 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.26 131.65 2 0.020943 1 85169 20150910_Q1_SA_NiHu_Masterprac_group10_B 44.426 38.809 4763700 0 4763700 0 0 0 0 1003 552 984 4555 3129 3129 1 CDLFIQEGAR Unmodified 1207.5656 0.56555694 1168;1169 Q49A26-2;Q49A26;Q49A26-4;Q49A26-5 GLYR1 Putative oxidoreductase GLYR1 no no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 124.64 113.44 2 0.0032766 3 77659 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.561 48.481 25812000 7351200 0 4758400 1895900 2559900 9246300 1004 1168;1169 985 4556;4557;4558;4559;4560 3130;3131;3132 3130 3 CDMSALQR Unmodified 979.42154 0.42153524 952 P51532-5;P51532-2;P51532-3;P51532-4;P51532;Q9HBD4;F5H0X5 SMARCA4 Transcription activator BRG1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 70.124 61.826 2 0.023129 1 43536 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.318 41.962 2632900 0 0 0 0 552030 2080900 1005 952 986 4561;4562 3133 3133 1 CDNCGIEPIQGVR Unmodified 1516.6762 0.67624638 1290 Q8IYH5-2;Q8IYH5;Q8IYH5-3 ZZZ3 ZZ-type zinc finger-containing protein 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 104.26 101.93 2 0.030411 1 67479 20150910_Q1_SA_NiHu_Masterprac_group10_B 44.511 37.607 2276600 0 845280 0 0 0 1431300 1006 1290 987 4563;4564 3134 3134 1 CDQCSYVASNQHEVTR Unmodified 1952.8105 0.81050803 1072 Q13127;A0PJ83;Q13127-4;F8WAN5 REST RE1-silencing transcription factor yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 63.708 61.626 3 0.034242 1 43083 20150910_Q1_SA_NiHu_Masterprac_group15_B 36.504 34.062 1781700 0 551240 0 0 0 1230400 1007 1072 988 4565;4566 3135 3135 1 CDRAFSRSDHLALHMK Unmodified 1942.9254 0.92541863 717 O43474-4;O43474-1;O43474 KLF4 Krueppel-like factor 4 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 93.367 81.737 4 0.00034197 2 62819 20150910_Q1_SA_NiHu_Masterprac_group13_C 71.879 56.999 9547300 0 0 2650500 0 3258200 3638600 1008 717 989 4567;4568;4569 3136;3137 3136 2 CDSVCVNPYHYER Unmodified 1697.6926 0.69262473 385 E7EUB6;Q9BYG6;Q13485 SMAD4 Mothers against decapentaplegic homolog 4 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 102.52 96.171 3 0.0072166 1 69731 20150910_Q1_SA_NiHu_Masterprac_group15_C 56.956 40.856 8258100 0 1853800 0 951270 5453000 0 1009 385 990 4570;4571;4572 3138 3138 1 CDVCNLQFATSSNLK Unmodified 1755.792 0.79200442 1524 Q9NPC7-3;Q9NPC7-2;Q9NPC7 MYNN Myoneurin yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 133.03 117.34 2 0.00058651 1 78798 20150910_Q1_SA_NiHu_Masterprac_group10_C 82.349 75.15 7663500 7663500 0 0 0 0 0 1010 1524 991 4573 3139 3139 1 CEAAFATKDRLR Unmodified 1436.7194 0.71943182 219 C6G496;P56270;G5E927;I3L2Z5;F5H7A6;H3BQI4;H3BQS2;H3BQD6 MAZ Myc-associated zinc finger protein yes no 0 0 2 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 72.636 65.259 3 0.0055774 3 45613 20150910_Q1_SA_NiHu_Masterprac_group10_B 77.662 62.563 58213000 5541000 6915100 8587500 7567300 14265000 15337000 1011 219 992 4574;4575;4576;4577;4578;4579 3140;3141;3142 3142 3 CEACLRTECGECHFCK Unmodified 2115.8053 0.80530477 124 B4DSN4;Q8NHM5-4;Q8NHM5-2;E7ET57;Q8NHM5-3;E7EML5;Q8NHM5;Q1RLM7;E9PBI6 KDM2B;FBXL10 Lysine-specific demethylase 2B yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 1 2 1 1 1 81.297 72.531 3;4 0.0041712 3 50095 20150910_Q1_SA_NiHu_Masterprac_group13_B 52.101 52.101 7879000 1194700 1110100 1969800 798730 1327600 1478000 1012 124 993 4580;4581;4582;4583;4584;4585;4586;4587 3143;3144;3145 3143 3 CEALQGFAR Unmodified 1050.4917 0.49166372 1612 Q9ULX9-2;Q9ULX9;B0QY71;B0QY70 MAFF Transcription factor MafF yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 2 1 1 102.84 93.295 2 1.464E-06 3 63145 20150910_Q1_SA_NiHu_Masterprac_group10_C 114.89 89.321 8913400 5304900 0 0 307210 3301300 0 1013 1612 994 4588;4589;4590;4591 3146;3147;3148 3148 3 CEEETDFVCR Unmodified 1343.5122 0.51220074 295 CON__P06868 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 90.22 82.508 2 6.1059E-48 6 61428 20150910_Q1_SA_NiHu_Masterprac_group15_C 140.49 140.49 10075000 2658600 839790 1230900 1134000 2500100 1711600 + 1014 295 995 4592;4593;4594;4595;4596;4597 3149;3150;3151;3152;3153;3154 3153 6 CEEETDFVCRAFQYHSK Unmodified 2204.9255 0.92553779 295 CON__P06868 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 131.79 131.79 3 0.0040529 1 84779 20150910_Q1_SA_NiHu_Masterprac_group13_B 49.223 34.648 7301300 0 0 0 7301300 0 0 + 1015 295 996 4598 3155 3155 1 CEETGNAYEDLSQKYK Unmodified 1933.8364 0.83637165 936 P49454 CENPF Centromere protein F yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 108.48 99.581 3 0.0020307 1 65971 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.824 53.464 5408100 891560 1697400 1037200 0 0 1781900 1016 936 997 4599;4600;4601;4602 3156 3156 1 CEFCGEFFENRK Unmodified 1621.6653 0.66534734 212 B7ZM82;B3KVH1;O95785;O95785-2 WIZ Protein Wiz yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 2 128.06 122.41 2;3 1.2636E-19 6 80352 20150910_Q1_SA_NiHu_Masterprac_group15_C 118.77 107.66 12174000 0 1308900 0 226770 3395200 7243600 1017 212 998 4603;4604;4605;4606;4607 3157;3158;3159;3160;3161;3162 3160 6 CELCDKGFAQK Unmodified 1354.601 0.60095617 1524 Q9NPC7-3;Q9NPC7-2;Q9NPC7 MYNN Myoneurin yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 1 2 2 2 71.44 65.557 2;3 7.4437E-42 6 47233 20150910_Q1_SA_NiHu_Masterprac_group10_C 133.81 99.917 14689000 3690700 1671500 0 2982500 2524600 3819800 1018 1524 999 4608;4609;4610;4611;4612;4613;4614;4615;4616 3163;3164;3165;3166;3167;3168 3168 6 CELCDVSCTGADAYAAHIR Unmodified 2167.9085 0.90850752 1403 Q96KR1;B5MEH6 ZFR Zinc finger RNA-binding protein yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 130.58 128.73 3 4.2841E-145 2 83207 20150910_Q1_SA_NiHu_Masterprac_group10_B 145.33 136.32 19726000 0 4653500 0 1140100 0 13933000 1019 1403 1000 4617;4618;4619 3169;3170 3170 2 CELCDVSCTGADAYAAHIRGAK Unmodified 2424.062 0.062048044 1403 Q96KR1;B5MEH6 ZFR Zinc finger RNA-binding protein yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 2 2 2 127.09 123.26 3;4 1.5715E-111 7 84398 20150910_Q1_SA_NiHu_Masterprac_group15_B 131.37 121.62 83492000 9852100 10228000 0 6396700 0 57015000 1020 1403 1001 4620;4621;4622;4623;4624;4625;4626 3171;3172;3173;3174;3175;3176;3177 3172 7 CELCPYSSSQK Unmodified 1357.5642 0.56423631 1072 Q13127;A0PJ83;Q13127-3 REST RE1-silencing transcription factor yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 75.501 67.154 2 0.0010215 2 47001 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.345 79.536 2906900 0 0 653910 358190 861570 1033300 1021 1072 1002 4627;4628;4629;4630 3178;3179 3178 2 CELNRHTTEAAAGALQNITAGDRR Unmodified 2624.2837 0.28374321 1650 Q9Y446 PKP3 Plakophilin-3 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 129.73 124.76 4 0.0085437 1 84470 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.4 26.772 5294900 0 0 0 0 0 5294900 1022 1650 1003 4631 3180 3180 1 CELSKNSDIEQSSDSKVK Unmodified 2052.9634 0.96336308 945;1251 P49792;E9PGT0;P0DJD0;P0DJD1;F8VYC4;Q99666;O14715;E7ES93;B4DTM4;H7BZ48;Q7Z3J3;B4DZH4 RANBP2;RGPD1;RGPD2;RGPD5;RGPD8;RGPD6;RGPD4 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8;RanBP2-like and GRIP domain-containing protein 4 no no 0 0 2 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 61.762 54.969 3;4 0.001431 7 39192 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.246 46.903 24006000 1899600 2288400 4357700 2270800 11250000 1939800 1023 945;1251 1004 4632;4633;4634;4635;4636;4637;4638;4639;4640;4641;4642;4643 3181;3182;3183;3184;3185;3186;3187 3187 7 CEMEGCGTVLAHPR Unmodified 1615.6905 0.69051624 677 Q96JP5-2;H9KV86;Q96JP5;H3BTR0 ZFP91;ZFP91-CNTF E3 ubiquitin-protein ligase ZFP91 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 2 87.648 81.163 2;3 0.00056845 3 55645 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.803 61.681 6919100 0 0 0 0 1518600 5400500 1024 677 1005 4644;4645;4646 3188;3189;3190 3188 3 CEPIIMTVPRK Unmodified 1342.7101 0.71011269 33 Q9ULV4;A7MAP0;B4E3S0;H0YHL7;B3KRY9;Q6QEF8-4;Q6QEF8-3;Q6QEF8-2;Q6QEF8-5;Q6QEF8;F8W759 CORO1C;CORO6 Coronin-1C;Coronin;Coronin-6 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 115.01 108.26 3 0.015044 2 71254 20150910_Q1_SA_NiHu_Masterprac_group10_B 51.727 51.727 4728400 356220 1458400 0 0 0 2913800 1025 33 1006 4647;4648;4649 3191;3192 3192 1 CESAFLSK Unmodified 940.43242 0.43241751 262 C9JXB8;C9JNW5;P83731 RPL24 60S ribosomal protein L24 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 84.555 68.713 2 0.012377 1 53270 20150910_Q1_SA_NiHu_Masterprac_group15_C 90.601 59.071 2030300 0 0 0 0 2030300 0 1026 262 1007 4650 3193 3193 1 CEVCEESFPTQAK Unmodified 1583.6596 0.65959326 1018 P98168;P98169 ZXDA;ZXDB Zinc finger X-linked protein ZXDA;Zinc finger X-linked protein ZXDB yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 97.456 92.116 2 0.0015158 3 62012 20150910_Q1_SA_NiHu_Masterprac_group13_B 79.875 66.774 4742800 0 1142600 1172900 898750 0 1528500 1027 1018 1008 4651;4652;4653;4654 3194;3195;3196 3194 3 CFEISDADTK Unmodified 1184.502 0.50195363 962 P53350;I3L387;Q58A51 PLK1;Plk-1 delta Serine/threonine-protein kinase PLK1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 97.452 89.473 2 3.0707E-16 1 61272 20150910_Q1_SA_NiHu_Masterprac_group15_B 124.67 104.68 23270000 876530 4880800 2869600 1374700 3728300 9540000 1028 962 1009 4655;4656;4657;4658;4659;4660 3197 3197 1 CFEISDADTKEVFAGK Unmodified 1815.8349 0.83491509 962 P53350;I3L387;Q58A51 PLK1;Plk-1 delta Serine/threonine-protein kinase PLK1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 133.26 117.57 3 0.00063933 1 79023 20150910_Q1_SA_NiHu_Masterprac_group10_C 81.992 53.213 10609000 10609000 0 0 0 0 0 1029 962 1010 4661 3198 3198 1 CFEVGMSK Unmodified 956.40957 0.40957357 832;122 D6RBI3;B4DSI3;P10826-2;P10826;P10826-3;B7Z4F1;P10276-2;P10276;A8MUP8;F8W8A4;P13631-2;P13631 RARB;RARG;RARA Retinoic acid receptor beta;Retinoic acid receptor gamma;Retinoic acid receptor alpha no no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 91.056 83.596 2 0.00077455 2 57262 20150910_Q1_SA_NiHu_Masterprac_group15_B 112.41 86.837 8793000 0 1288000 1854200 805080 923980 3921700 1030 122;832 1011 4662;4663;4664;4665;4666 3199;3200 3200 2 CFGTGAAGNRTSPQEGERYNYSK Unmodified 2549.1353 0.13534764 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 83.921 76.343 3 0.033563 1 52582 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.993 31.857 11867000 1443500 2064100 1261800 1179000 2664800 3254300 1031 1012 1012 4667;4668;4669;4670;4671;4672 3201 3201 1 CFIQSSHLIR Unmodified 1259.6445 0.64447597 847 P17098;B4DSF4 ZNF8 Zinc finger protein 8 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 117.88 107.42 3 0.030691 1 73485 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.539 37.319 1807900 0 0 0 0 655440 1152400 1032 847 1013 4673;4674 3202 3202 1 CFNQSSSLIIHQR Unmodified 1588.778 0.77800934 1282 Q8IWY8-2;Q8IWY8;Q8IWY8-4;P17040-2;P17040-3;P17040 ZSCAN29;ZSCAN20 Zinc finger and SCAN domain-containing protein 29;Zinc finger and SCAN domain-containing protein 20 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 109.29 100.46 3 0.0020983 4 68504 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.945 54.823 6138200 740760 987140 1392500 483530 244850 2289500 1033 1282 1014 4675;4676;4677;4678;4679;4680 3203;3204;3205;3206 3204 4 CFSPGVIEVQEVQGKK Unmodified 1803.9189 0.91891949 704 O15160-2;O15160 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 130.19 129.59 3 1.1819E-38 2 83021 20150910_Q1_SA_NiHu_Masterprac_group10_B 118.52 104.12 11313000 0 11313000 0 0 0 0 1034 704 1015 4681 3207;3208 3208 2 CFTACESEEDKDRTEK Unmodified 2003.8201 0.82006966 362 Q96PV6;Q96PV6-2;F8W9Q9;E7EQP8 LENG8 Leukocyte receptor cluster member 8 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 51.501 46.858 4 0.0026626 2 33451 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.898 48.781 6191500 843160 1474900 1370100 633500 0 1869800 1035 362 1016 4682;4683;4684;4685;4686 3209;3210 3210 2 CFTVSSHLVEHVR Unmodified 1569.7722 0.77219568 977 P58317;B4DNH5 ZNF121 Zinc finger protein 121 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 107.41 103.85 3 0.0083656 1 71025 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.326 54.972 0 0 0 0 0 0 0 1036 977 1017 4687 3211 3211 1 CGAAFISNSHLMR Unmodified 1462.6809 0.68093783 835 P13682;B4DUB8 ZNF35 Zinc finger protein 35 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 119.63 112.26 3 0.021989 2 78458 20150910_Q1_SA_NiHu_Masterprac_group15_C 45.891 14.412 3688800 0 0 0 704190 335200 2649400 1037 835 1018 4688;4689;4690 3212;3213 3213 2 CGAALAGHQLIR Unmodified 1265.6663 0.66627404 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 2 90.719 88.679 2;3 0.014612 2 60857 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.08 32.873 2322300 0 180160 0 0 0 2142100 1038 1012 1019 4691;4692;4693 3214;3215 3215 2 CGAPNCSGFLGVRPK Unmodified 1618.7708 0.77081547 1404 Q96L73-2;Q96L73-3;Q96L73 NSD1 Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 111.15 103.74 3 0.00079544 5 68517 20150910_Q1_SA_NiHu_Masterprac_group10_B 78.615 78.615 10956000 1532400 2294700 1790800 1625600 0 3712400 1039 1404 1020 4694;4695;4696;4697;4698;4699 3216;3217;3218;3219;3220 3219 5 CGDLVFAK Unmodified 908.44259 0.44258826 954 P51858;B7Z525 HDGF Hepatoma-derived growth factor yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 109.7 94.559 2 0.009317 2 70247 20150910_Q1_SA_NiHu_Masterprac_group13_C 101.43 42.513 21513000 6749000 0 6111600 0 8652500 0 1040 954 1021 4700;4701;4702 3221;3222 3221 2 CGDSVYAAEK Unmodified 1098.4652 0.4651742 1152 Q16527;F8VW96;F8VQR7 CSRP2 Cysteine and glycine-rich protein 2 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 51.681 44.235 2 0.015827 2 35996 20150910_Q1_SA_NiHu_Masterprac_group13_C 67.214 20.758 2368500 0 951770 1416800 0 0 0 1041 1152 1022 4703;4704 3223;3224 3223 2 CGEDDETIPSEYR Unmodified 1569.6253 0.62531625 375 G5E9D3;P20810-5;E7ESM9;P20810-7;P20810-6;B7Z468;F8W7E0;H0Y7F0;P20810-3;E9PDE4;E7ES10;P20810-4;E9PCH5;G5E946;B7Z574;P20810-2;P20810;H0Y9H6;E7EVY3;E7EQ12;E7EQA0;D6RAA8;H0YD33 CAST Calpastatin yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 92.094 90.739 2 2.4544E-34 3 61337 20150910_Q1_SA_NiHu_Masterprac_group10_B 119.25 118.17 7489000 0 2024400 0 1947600 0 3517000 1042 375 1023 4705;4706;4707;4708 3225;3226;3227 3227 3 CGEDDETIPSEYRLKPATDK Unmodified 2323.0638 0.063805408 375 G5E9D3;P20810-5;E7ESM9;P20810-7;P20810-6;B7Z468;H0Y7F0;P20810-3;E9PDE4;E7ES10;P20810-4;E9PCH5;G5E946;B7Z574;P20810-2;P20810;H0Y9H6;E7EVY3;E7EQ12;E7EQA0;D6RAA8;H0YD33 CAST Calpastatin yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 105.55 103.07 3 0.0023182 2 68066 20150910_Q1_SA_NiHu_Masterprac_group10_B 56.25 40.729 1247100 0 557920 0 0 0 689180 1043 375 1024 4709;4710 3228;3229 3229 2 CGEESSPVHTSTFLSNTLKK Unmodified 2221.0685 0.068496856 1492 Q9H582-2;Q9H582 ZNF644 Zinc finger protein 644 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 130.6 114.92 4 0.032451 1 76263 20150910_Q1_SA_NiHu_Masterprac_group10_C 29.72 13.042 1876700 1876700 0 0 0 0 0 1044 1492 1025 4711 3230 3230 1 CGESGHLARECTIEATA Unmodified 1860.8094 0.8094454 112;992 B4DP17;P62633-3;P62633-2;P62633;P62633-5;E9PDR7;P62633-4 CNBP Cellular nucleic acid-binding protein no no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 94.58 77.789 3 0.036877 1 60422 20150910_Q1_SA_NiHu_Masterprac_group13_C 59.709 39.43 0 0 0 0 0 0 0 1045 112;992 1026 4712 3231 3231 1 CGETGHVAINCSK Unmodified 1431.6235 0.62348253 112;992 B4DP17;P62633-3;P62633-2;P62633;P62633-5;E9PDR7;P62633-4 CNBP Cellular nucleic acid-binding protein no no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 2 2 49.921 43.677 2;3 0.0015665 4 31409 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.863 66.467 18961000 1590700 2137800 3337600 1170500 3343300 7380700 1046 112;992 1027 4713;4714;4715;4716;4717;4718;4719;4720;4721;4722;4723 3232;3233;3234;3235 3233 4 CGFCHVGEEENEAR Unmodified 1692.6621 0.66205288 152 B4E0G4;Q8IWS0;E9PC97;Q5JRC6;Q8IWS0-2 PHF6 PHD finger protein 6 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 73.231 65.836 3 0.0010115 5 47472 20150910_Q1_SA_NiHu_Masterprac_group10_C 70.68 65.306 13740000 1942000 1630000 2167400 1152600 2823400 4024400 1047 152 1028 4724;4725;4726;4727;4728;4729 3236;3237;3238;3239;3240 3240 5 CGFCHVGEEENEARGK Unmodified 1877.7785 0.77847962 152 B4E0G4;Q8IWS0;E9PC97;Q5JRC6;Q8IWS0-2 PHF6 PHD finger protein 6 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 2 2 1 2 64.829 58.366 3;4 0.00051653 9 41025 20150910_Q1_SA_NiHu_Masterprac_group13_B 72.321 61.551 21977000 3482700 3401800 5274100 2863400 2425900 4528600 1048 152 1029 4730;4731;4732;4733;4734;4735;4736;4737;4738;4739;4740;4741 3241;3242;3243;3244;3245;3246;3247;3248;3249 3241 9 CGFGVCVDCYR Unmodified 1391.5421 0.54206108 516 Q9Y4C1;F5H4E6;F5H070;F8WE62 KDM3A Lysine-specific demethylase 3A yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 130.46 129.86 2 0.038025 1 83335 20150910_Q1_SA_NiHu_Masterprac_group10_B 48.948 45.086 1812500 0 1812500 0 0 0 0 1049 516 1030 4742 3250 3250 1 CGGIDEMQSSR Unmodified 1238.502 0.50197041 1626 Q9UQR1;F5H173;C9JRX0;C9K0U4;C9J6Y6 ZNF148 Zinc finger protein 148 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 62.001 57.956 2 0.014262 1 41034 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.84 46.882 1795900 393680 482930 0 0 0 919270 1050 1626 1031 4743;4744;4745 3251 3251 1 CGICGKGFGDSSAR Unmodified 1470.6344 0.63438157 1408 Q96MX3 ZNF48 Zinc finger protein 48 yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 72.675 65.298 3 0.0013004 3 45694 20150910_Q1_SA_NiHu_Masterprac_group13_B 79.639 67.679 6324800 1306300 813620 1229100 1268700 1096500 610610 1051 1408 1032 4746;4747;4748;4749;4750;4751 3252;3253;3254 3252 2 CGKPPCEVDSPSFPCTHCGK Unmodified 2318.9541 0.9540775 1402 Q96KM6 ZNF512B Zinc finger protein 512B yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 2 1 1 96.117 89.579 3;4 3.5138E-39 5 61319 20150910_Q1_SA_NiHu_Masterprac_group10_C 112.44 107.13 19920000 12667000 3620200 0 0 1584400 2048100 1052 1402 1033 4752;4753;4754;4755;4756 3255;3256;3257;3258;3259 3259 5 CGLVIGKGGENIK Unmodified 1343.7231 0.72312022 1394 Q96I24 FUBP3 Far upstream element-binding protein 3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 1 94.123 86.538 2;3 2.8001E-34 7 65753 20150910_Q1_SA_NiHu_Masterprac_group13_C 122.46 82.835 34990000 3953900 7395100 13460000 6501800 1932500 1747500 1053 1394 1034 4757;4758;4759;4760;4761;4762;4763;4764;4765;4766 3260;3261;3262;3263;3264;3265;3266 3263 7 CGLVIGRGGENVK Unmodified 1357.7136 0.71361816 1366 Q92945-2;Q92945 KHSRP Far upstream element-binding protein 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 2 2 85.871 78.151 2;3 1.5492E-240 13 54022 20150910_Q1_SA_NiHu_Masterprac_group10_C 179.67 130.48 1403000000 180370000 235580000 158010000 150150000 370680000 308230000 1054 1366 1035 4767;4768;4769;4770;4771;4772;4773;4774;4775;4776;4777;4778;4779;4780 3267;3268;3269;3270;3271;3272;3273;3274;3275;3276;3277;3278;3279 3278 13 CGLVIGRGGENVKAINQQTGAFVEISR Unmodified 2872.4978 0.49775874 1366 Q92945-2;Q92945 KHSRP Far upstream element-binding protein 2 yes no 0 0 2 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 132.96 126.76 3;4 2.7606E-09 2 85809 20150910_Q1_SA_NiHu_Masterprac_group13_B 61.238 50.042 99369000 0 51478000 13665000 34226000 0 0 1055 1366 1036 4781;4782;4783 3280;3281 3280 2 CGPCNSFVR Unmodified 1095.459 0.45898338 281 Q15323;CON__Q9UE12;CON__Q15323;CON__A2A5Y0 KRT31 Keratin, type I cuticular Ha1 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 71.429 71.429 2 1.6235E-19 1 49238 20150910_Q1_SA_NiHu_Masterprac_group13_B 128.38 111.14 8152500 0 0 0 8152500 0 0 + 1056 281 1037 4784 3282 3282 1 CGVCEVCQQPECGK Unmodified 1709.663 0.66298086 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 71.865 64.52 2 0.0030137 6 51683 20150910_Q1_SA_NiHu_Masterprac_group13_C 61.167 58.005 10481000 1000500 1716100 1804800 741480 1154500 4063400 1057 487 1038 4785;4786;4787;4788;4789;4790 3283;3284;3285;3286;3287;3288 3285 6 CGVCEVCQQPECGKCK Unmodified 1997.7886 0.78859208 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 63.23 56.353 3 8.5212E-80 1 39667 20150910_Q1_SA_NiHu_Masterprac_group15_B 134.37 126.03 19248000 1610600 4099700 4033500 1699300 2535500 5269200 1058 487 1039 4791;4792;4793;4794;4795;4796 3289 3289 1 CGVCGKGFGDSSAR Unmodified 1456.6187 0.6187315 1408 Q96MX3 ZNF48 Zinc finger protein 48 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 1 1 58.978 52.289 3 0.012394 3 43521 20150910_Q1_SA_NiHu_Masterprac_group13_C 49.356 31.22 8519000 2457200 725220 1277600 1176100 1535200 1347700 1059 1408 1040 4797;4798;4799;4800;4801;4802;4803 3290;3291;3292 3290 3 CGVCGKGFGDSSARIK Unmodified 1697.7978 0.7977585 1408 Q96MX3 ZNF48 Zinc finger protein 48 yes yes 0 0 2 By MS/MS By matching By matching By MS/MS By matching By matching 2 1 73.437 67.957 3;4 0.0020988 2 48187 20150910_Q1_SA_NiHu_Masterprac_group10_C 60.968 44.242 2474900 1540800 0 0 934130 0 0 1060 1408 1041 4804;4805;4806 3293;3294 3294 2 CGVEFSEPSLATK Unmodified 1423.6653 0.66533057 1231 Q6PJG2;F6RU81;H7C1L3 ELMSAN1 ELM2 and SANT domain-containing protein 1 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 130.65 125.22 2 4.7057E-182 3 78111 20150910_Q1_SA_NiHu_Masterprac_group10_C 171.99 133.75 58637000 33167000 19551000 0 5918600 0 0 1061 1231 1042 4807;4808;4809 3295;3296;3297 3297 3 CGYPGHLTFECR Unmodified 1495.6337 0.63365328 1311 Q8N9Q2 SREK1IP1 Protein SREK1IP1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 114.29 105.14 3 0.0020293 2 72004 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.611 69.238 5060100 962090 1177400 0 0 1117900 1802700 1062 1311 1043 4810;4811;4812;4813 3298;3299 3298 2 CHACLNQALCPAAQGL Unmodified 1782.7964 0.79637829 636 H3BPD5;P78549 NTHL1 Endonuclease III-like protein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 132.73 122.3 2 0 5 85411 20150910_Q1_SA_NiHu_Masterprac_group13_B 208.08 174.94 303290000 54504000 63653000 61075000 34887000 89172000 0 1063 636 1044 4814;4815;4816;4817;4818 3300;3301;3302;3303;3304 3300 5 CHLTACQTGVGAK Unmodified 1401.6493 0.64930335 960 P52739-2;P52739 ZNF131 Zinc finger protein 131 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 1 1 1 2 55.244 47.386 2;3 0.00062461 6 34763 20150910_Q1_SA_NiHu_Masterprac_group10_B 92.112 70.084 8490300 2614200 730500 794280 1608600 2742800 0 1064 960 1045 4819;4820;4821;4822;4823;4824;4825;4826 3305;3306;3307;3308;3309;3310 3308 6 CIACQCPSKQNQTTAISTPASSEISKAPK Unmodified 3162.5108 0.51076754 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 107.57 99.592 4 0.00093891 3 66075 20150910_Q1_SA_NiHu_Masterprac_group10_B 37.405 25.836 59616000 0 14709000 12986000 6560100 11676000 13685000 1065 945 1046 4827;4828;4829;4830;4831 3311;3312;3313 3313 3 CIACQNPGKQNQTTSAVSTPASSETSKAPK Unmodified 3147.4925 0.49247494 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 81.878 74.316 4 0.00035508 5 58170 20150910_Q1_SA_NiHu_Masterprac_group13_C 36.142 31.777 161490000 50381000 20307000 29154000 23604000 19077000 18968000 1066 945 1047 4832;4833;4834;4835;4836;4837 3314;3315;3316;3317;3318 3316 5 CIGPGCCHVAQPDSVYCSNDCILK Unmodified 2809.175 0.17504567 1447 Q9BTC0;Q9BTC0-1;Q9BTC0-2;Q9BTC0-3 DIDO1 Death-inducer obliterator 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 131.7 122.2 3 4.7178E-148 7 84108 20150910_Q1_SA_NiHu_Masterprac_group10_B 141.74 127.63 249490000 40182000 71976000 42452000 44211000 6214700 44457000 1067 1447 1048 4838;4839;4840;4841;4842;4843 3319;3320;3321;3322;3323;3324;3325 3324 7 CIIVMPEK Unmodified 988.50856 0.50855934 898 P35520;P35520-2;C9JMA6;F5H2U1;B7Z2D6 CBS Cystathionine beta-synthase;Cysteine synthase yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 121.03 113.99 2 0.016902 1 77561 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.426 35.432 1918400 409240 335300 0 0 0 1173800 1068 898 1049 4844;4845;4846 3326 3326 1 CILNGINSSAK Unmodified 1175.5969 0.59685707 1180 Q5FWF5;Q5FWF5-2 ESCO1 N-acetyltransferase ESCO1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 103.88 95.467 2 0.013912 2 65365 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.255 32.288 7645900 698130 802810 1667400 768150 1139800 2569500 1069 1180 1050 4847;4848;4849;4850;4851;4852 3327;3328 3327 2 CIQCGQYLDDPDLK Unmodified 1723.7546 0.75455628 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 129.74 119.56 2 0 2 82334 20150910_Q1_SA_NiHu_Masterprac_group13_C 196.84 154.76 17866000 0 0 2630100 354560 672820 14209000 1070 487 1051 4853;4854;4855;4856 3329;3330 3329 1 CIRAFPNKQGYVLSSIEGR Unmodified 2194.1317 0.13170624 719 O43684-2;O43684;B4DDM6 BUB3 Mitotic checkpoint protein BUB3 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 2 131.49 131.49 3;4 0.018174 2 84533 20150910_Q1_SA_NiHu_Masterprac_group13_B 37.285 14.318 7576500 0 0 0 7576500 0 0 1071 719 1052 4857;4858 3331;3332 3331 2 CKLPEQESLPNDNK Unmodified 1670.7934 0.79338463 1332 Q8NI77 KIF18A Kinesin-like protein KIF18A yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 81.165 76.953 3 0.0075837 1 52937 20150910_Q1_SA_NiHu_Masterprac_group10_B 53.038 37.843 1966800 575900 639700 0 0 0 751200 1072 1332 1053 4859;4860;4861 3333 3333 1 CLAALASLR Unmodified 973.53789 0.53788563 243 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;C9JFV5;Q12906;G5E9M5 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 133.23 115.38 2 0.031556 1 82290 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.816 20.008 9863800 0 0 0 0 9863800 0 1073 243 1054 4862 3334 3334 1 CLAALASLRHAK Unmodified 1309.7289 0.7288743 243 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;C9JFV5;Q12906;G5E9M5 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 104.85 97.719 2;3 0.001832 6 66368 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.036 65.635 31053000 0 5912800 6309100 3882000 3814100 11135000 1074 243 1055 4863;4864;4865;4866;4867;4868 3335;3336;3337;3338;3339;3340 3336 6 CLACESAKPGTK Unmodified 1320.6166 0.61660624 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 2 2 2 2 2 40.133 35.233 2;3 0.0099652 4 24116 20150910_Q1_SA_NiHu_Masterprac_group13_B 59.155 40.578 10609000 707650 2526600 5063300 871100 534440 905610 1075 531 1056 4869;4870;4871;4872;4873;4874;4875;4876;4877;4878;4879 3341;3342;3343;3344 3341 4 CLDALAALRHAK Unmodified 1337.7238 0.72378892 1403 Q96KR1;B5MEH6 ZFR Zinc finger RNA-binding protein yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 130.71 112.83 3 0.0092627 1 81601 20150910_Q1_SA_NiHu_Masterprac_group13_C 59.84 31.608 18689000 0 0 16585000 0 2104300 0 1076 1403 1057 4880;4881 3345 3345 1 CLDPVDTPNPTR Unmodified 1383.6453 0.64526383 784 P03973 SLPI Antileukoproteinase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 98.463 95.704 2 0.0036521 1 65527 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.676 39.373 739310 0 0 0 0 0 739310 1077 784 1058 4882 3346 3346 1 CLECESLTER Unmodified 1295.5486 0.54858625 755 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 91.357 82.408 2 0.03751 1 56499 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.259 38.339 976550 0 0 0 0 141680 834870 1078 755 1059 4883;4884 3347 3347 1 CLENRVAVLENQNK Unmodified 1685.8519 0.85190256 841 P16220-3;P16220-2;P16220;F8W746;E9PAR2;Q03060-23;Q03060-9;Q03060-24;Q03060-8;A8MPQ2;Q5W1B0;C9IYZ7;Q03060-21;C9JK96;E9PHM1;G5E998;Q03060-6 CREB1;CREM Cyclic AMP-responsive element-binding protein 1;cAMP-responsive element modulator no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 106.5 96.326 3 1.0144E-69 6 71346 20150910_Q1_SA_NiHu_Masterprac_group13_C 134.18 111.69 44685000 10266000 6823700 6740000 0 6214500 14641000 1079 841 1060 4885;4886;4887;4888;4889 3348;3349;3350;3351;3352;3353 3348 6 CLGELTEVCK Unmodified 1207.5577 0.55769437 965 P54132;F5H7R6;F5H3V6 BLM Bloom syndrome protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 109.34 105.68 2 0.03751 1 72365 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.259 43.906 1309600 0 0 0 0 0 1309600 1080 965 1061 4890 3354 3354 1 CLGPPTTPGPYR Unmodified 1314.6391 0.63905624 594 G5E9E2;Q5J9I4;P29372-2;P29372;A2IDA3 MPG DNA-3-methyladenine glycosylase yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 1 110.54 102.6 2 0.0019881 6 67773 20150910_Q1_SA_NiHu_Masterprac_group10_B 88.596 69.924 42812000 2985800 7310600 4307600 3009100 1480100 23719000 1081 594 1062 4891;4892;4893;4894;4895;4896;4897 3355;3356;3357;3358;3359;3360 3359 6 CLGRFGLESHAHTIQICK Unmodified 2126.0513 0.051347424 1321 Q8NE71;Q8NE71-2;H0YGW7;Q5STZ7 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1 124.47 115.11 4;5 6.529E-05 5 80635 20150910_Q1_SA_NiHu_Masterprac_group13_C 85.988 61.997 32232000 5245600 0 13455000 4899000 1684600 6948000 1082 1321 1063 4898;4899;4900;4901;4902;4903 3361;3362;3363;3364;3365 3362 5 CLLHDSIARHPAPEDPDWIK Unmodified 2369.1586 0.15864927 1602 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 131.3 126.33 4 0.032152 1 86143 20150910_Q1_SA_NiHu_Masterprac_group15_B 34.388 15.068 8437900 0 0 0 0 0 8437900 1083 1602 1064 4904 3366 3366 1 CLLLVHEPK Unmodified 1107.6111 0.61105057 193 B7Z6Q6;Q99661;Q99661-2;Q5JR91;B7Z7M6;Q5JR89 KIF2C Kinesin-like protein KIF2C yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 111.46 102.53 2 0.0065883 4 70005 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.265 58.85 44743000 2330500 5374300 4120200 1690700 5872400 25355000 1084 193 1065 4905;4906;4907;4908;4909;4910 3367;3368;3369;3370 3368 4 CLLLVHEPKLK Unmodified 1348.7901 0.79007757 193 B7Z6Q6;Q99661;Q99661-2;Q5JR91;B7Z7M6 KIF2C Kinesin-like protein KIF2C yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 124.69 117.03 3 7.8824E-13 4 79510 20150910_Q1_SA_NiHu_Masterprac_group15_C 115.7 104.12 36662000 0 4947100 13134000 938100 8955000 8687900 1085 193 1066 4911;4912;4913;4914;4915;4916 3371;3372;3373;3374 3374 4 CLLLVHEPKLKVDLTK Unmodified 1905.1121 0.11213999 193 B7Z6Q6;Q99661;Q99661-2;Q5JR91;B7Z7M6 KIF2C Kinesin-like protein KIF2C yes no 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 132.39 120.48 4 2.2297E-07 3 85313 20150910_Q1_SA_NiHu_Masterprac_group13_B 93.716 79.37 38600000 0 0 26563000 9736100 2300600 0 1086 193 1067 4917;4918;4919 3375;3376;3377 3375 3 CLMDQATDPNILGR Unmodified 1602.7494 0.74941132 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 133.1 132.5 2 0 1 86089 20150910_Q1_SA_NiHu_Masterprac_group10_B 212.55 171.33 41433000 0 41433000 0 0 0 0 1087 1012 1068 4920 3378 3378 1 CLPCPDSQK Unmodified 1103.474 0.47396474 1161 Q2TAK8;Q2TAK8-2 MUM1 PWWP domain-containing protein MUM1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 55.752 50.829 2 0.038196 1 36666 20150910_Q1_SA_NiHu_Masterprac_group10_B 60.828 46.159 3359700 252360 849290 1033800 82542 0 1141700 1088 1161 1069 4921;4922;4923;4924;4925 3379 3379 1 CLSPEYAGK Unmodified 1023.4695 0.46953129 1638 Q9Y2U8 LEMD3 Inner nuclear membrane protein Man1 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 64.376 61.318 2 2.1578E-29 2 42915 20150910_Q1_SA_NiHu_Masterprac_group15_B 134.05 75.27 8528500 2077000 1789200 0 1588300 0 3074000 1089 1638 1070 4926;4927;4928;4929 3380;3381 3380 2 CLSSYTSVKENFDK Unmodified 1676.7716 0.77158655 474 F2Z2E1;Q96EK7;F5GZX9;F5GY05;Q96EK7-2 FAM120B Constitutive coactivator of peroxisome proliferator-activated receptor gamma yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 107.06 104.58 3 0.026447 1 71577 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.797 26.223 2881800 0 596180 0 0 0 2285600 1090 474 1071 4930;4931 3382 3382 1 CLTPLVPEDLRK Unmodified 1439.7806 0.7806351 726 O60216 RAD21 Double-strand-break repair protein rad21 homolog yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 131.99 123.12 3 0.012109 2 81314 20150910_Q1_SA_NiHu_Masterprac_group15_C 50.467 21.678 9587500 0 0 0 3481300 6106200 0 1091 726 1072 4932;4933 3383;3384 3384 2 CLYEVGRDDNSK Unmodified 1454.646 0.64599211 1415 Q96QE3;Q96QE3-2 ATAD5 ATPase family AAA domain-containing protein 5 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 72.118 64.773 3 3.2129E-08 5 45234 20150910_Q1_SA_NiHu_Masterprac_group15_B 106.67 76.741 9199400 816600 1945000 1946400 863510 888990 2738900 1092 1415 1073 4934;4935;4936;4937;4938;4939 3385;3386;3387;3388;3389 3386 5 CLYRHAYPDGR Unmodified 1406.6514 0.65135226 114 B4DPR4;C9J494;Q9H000 MKRN2 Probable E3 ubiquitin-protein ligase makorin-2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 57.012 55.957 3 0.014184 1 39467 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.255 41.289 767870 0 0 0 0 0 767870 1093 114 1074 4940 3390 3390 1 CMHCSGENYEGK Unmodified 1470.5326 0.53261861 295 CON__P06868 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 39.337 29.962 3 0.0015235 1 24193 20150910_Q1_SA_NiHu_Masterprac_group13_C 83.137 83.137 4129000 0 0 4129000 0 0 0 + 1094 295 1075 4941 3391 3391 1 CMHCSGENYEGKIAK Unmodified 1782.7488 0.7487594 295 CON__P06868 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 57.985 50.617 3 0.0021368 2 37684 20150910_Q1_SA_NiHu_Masterprac_group10_C 67.102 61.852 3832400 3832400 0 0 0 0 0 + 1095 295 1076 4942 3392;3393 3392 2 CMNYDPNQRPFFR Unmodified 1743.761 0.76097906 868 P23458 JAK1 Tyrosine-protein kinase JAK1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.62 125.66 3 0.03283 1 85413 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.897 32.442 3589900 0 0 0 0 0 3589900 1096 868 1077 4943 3394 3394 1 CMPAPEEIVEELPASK Unmodified 1798.8481 0.84812231 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 135.55 135.55 2 0.029533 1 88630 20150910_Q1_SA_NiHu_Masterprac_group13_B 38.889 23.249 2269200 0 0 0 2269200 0 0 1097 919;920 1078 4944 3395 3395 1 CMPSEPETIKAK Unmodified 1389.6632 0.66322208 1250 Q7Z333-3;Q7Z333;Q7Z333-4 SETX Probable helicase senataxin yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 74.388 69.199 3 0.015556 1 55135 20150910_Q1_SA_NiHu_Masterprac_group13_C 54.65 38.427 8504300 0 1809600 2186500 831450 0 3676800 1098 1250 1079 4945;4946;4947;4948 3396 3396 1 CNAAFGAHDFHR Unmodified 1401.5997 0.59965104 634 O75150-4;H3BP71;O75150;F8W8Z4;Q6ZN99 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 75.078 68.193 3 0.0015578 3 47493 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.605 42.522 1754200 0 465030 527140 0 0 762040 1099 634 1080 4949;4950;4951 3397;3398;3399 3398 3 CNALVTSVDSAPAAVK Unmodified 1601.8083 0.80830641 1369 Q96B01-2;Q96B01;B4DUS5 RAD51AP1 RAD51-associated protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 126.52 124.66 2 1.9941E-11 1 84443 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.291 76.558 12076000 0 2386700 0 622000 0 9067100 1100 1369 1081 4952;4953;4954 3400 3400 1 CNEEHPAYLASDEITTVRK Unmodified 2232.0481 0.048095765 336 O60313;E5KLK1;E5KLJ6;E5KLJ9;O60313-2;E5KLJ5 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 2 1 2 113.93 104.77 3;4 0.00025031 7 71625 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.808 59.38 28359000 4615000 4658200 7080000 2591400 0 9414500 1101 336 1082 4955;4956;4957;4958;4959;4960;4961;4962 3401;3402;3403;3404;3405;3406;3407 3403 7 CNELQDIEK Unmodified 1147.5179 0.51793805 500 F5GZI1;O60264;F6TQG2;P28370-2;P28370 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 89.229 83.333 2 0.014565 1 57096 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.744 37.248 5311400 1498500 1596600 0 475840 521290 1219100 1102 500 1083 4963;4964;4965;4966;4967 3408 3408 1 CNEQPNRVEIYEK Unmodified 1677.7781 0.77806891 359 Q7L576;E7EQ04;E7EVJ5;Q96F07-2;E7EVF4;Q96F07;E7EWA4;H0YLJ5;H0YL39 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 80.728 72.08 3 2.7656E-09 2 49993 20150910_Q1_SA_NiHu_Masterprac_group15_B 104.24 40.771 2084000 0 0 0 0 1119700 964320 1103 359 1084 4968;4969 3409;3410 3410 2 CNFESNFPRGFK Unmodified 1501.6772 0.67723266 1399 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.43 125.47 3 0.0084905 1 85210 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.691 33.047 2693100 0 0 0 0 0 2693100 1104 1399 1085 4970 3411 3411 1 CNFESNFPRGFKK Unmodified 1629.7722 0.77219568 1399 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 117.4 104.22 3 0.0022426 1 69589 20150910_Q1_SA_NiHu_Masterprac_group10_C 92.247 37.903 5164700 1210800 0 973990 0 635410 2344500 1105 1399 1086 4971;4972;4973;4974 3412 3412 1 CNGQPVPFQQPK Unmodified 1398.6714 0.671419 1540 Q9NRZ9-6;Q9NRZ9-5;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9;Q9NRZ9-8;Q9NRZ9-7 HELLS Lymphoid-specific helicase yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 98.105 88.554 2 0.022684 1 60626 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.786 12.818 4040300 0 623170 514390 0 593620 2309100 1106 1540 1087 4975;4976;4977;4978 3413 3413 1 CNSHLEITIPK Unmodified 1310.6653 0.66527099 1180 Q5FWF5;Q5FWF5-2 ESCO1 N-acetyltransferase ESCO1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 129 112.16 3 0.001111 2 80579 20150910_Q1_SA_NiHu_Masterprac_group13_C 92.112 56.934 3619000 198100 0 3420900 0 0 0 1107 1180 1088 4979;4980 3414;3415 3415 2 CNYCSFDTKQPSNLSK Unmodified 1947.8455 0.84549655 72 B3KQX0;Q9NPA5-2;E2QRH5;Q5JWM1;Q9NPA5 ZFP64 Zinc finger protein 64 homolog, isoforms 1 and 2;Zinc finger protein 64 homolog, isoforms 3 and 4 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 99.025 89.649 3 0.0029447 1 60527 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.69 53.454 7748700 0 2883700 0 0 4864900 0 1108 72 1089 4981;4982 3416 3416 1 CQALGVITEK Unmodified 1117.5801 0.58014438 748 O75616;O75616-2 ERAL1 GTPase Era, mitochondrial yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 98.803 96.045 2 0.014795 1 65723 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.132 46.352 3549500 0 0 0 0 0 3549500 1109 748 1090 4983 3417 3417 1 CQNALQQVVAR Unmodified 1285.6561 0.65610329 1041 Q06210-2;Q06210 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 108.33 99.529 2 6.4755E-70 3 67771 20150910_Q1_SA_NiHu_Masterprac_group15_B 147.3 118.51 9717000 780970 1376200 1259800 897320 1557000 3845700 1110 1041 1091 4984;4985;4986;4987;4988;4989 3418;3419;3420 3419 2 CQNIYLTTGYAGSK Unmodified 1574.7399 0.73989249 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 117.8 110.08 2 0.001107 1 75301 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.898 59.976 11334000 1428100 1160600 0 982020 3082900 4680000 1111 578 1092 4990;4991;4992;4993;4994 3421 3421 1 CQNLQWMPSK Unmodified 1290.5849 0.58491218 464 Q03164-2;Q03164;E9PQG7;E9PR05 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 122.73 114.89 2 0.0027644 1 75982 20150910_Q1_SA_NiHu_Masterprac_group10_C 97.734 82.955 2377400 1835200 0 0 542160 0 0 1112 464 1093 4995;4996 3422 3422 1 CQPVFSFGNSEQTKDENSSK Unmodified 2288.0015 0.0015395026 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 117.38 108.13 3 0.003653 3 76467 20150910_Q1_SA_NiHu_Masterprac_group15_C 47.088 31.91 17162000 3915000 1751200 3375300 2925500 2764100 2431100 1113 531 1094 4997;4998;4999;5000;5001;5002 3423;3424;3425 3424 3 CQSLGGPAAAYATGK Unmodified 1450.6875 0.68746299 1608 Q9ULL5-3 PRR12 Proline-rich protein 12 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 101.58 94.988 2 1.7405E-05 4 70395 20150910_Q1_SA_NiHu_Masterprac_group13_C 90.476 65.976 7444400 229900 1525500 1721400 1104900 0 2862700 1114 1608 1095 5003;5004;5005;5006;5007 3426;3427;3428;3429 3427 4 CQTCNASFATR Unmodified 1314.5445 0.54450393 1517 Q9HBE1-3;Q9HBE1;Q9HBE1-2 PATZ1 POZ-, AT hook-, and zinc finger-containing protein 1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 60.788 54.321 2 0.0091631 2 38500 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.023 59.129 2901800 481730 500610 0 0 557860 1361600 1115 1517 1096 5008;5009;5010;5011;5012 3430;3431 3431 2 CQTCTAAFATK Unmodified 1257.5482 0.54819232 1094 Q14119 VEZF1 Vascular endothelial zinc finger 1 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 66.792 61.257 2 0.0039728 4 42841 20150910_Q1_SA_NiHu_Masterprac_group13_B 79.492 48.928 21535000 2391800 2953500 0 1807700 6554900 7827000 1116 1094 1097 5013;5014;5015;5016;5017 3432;3433;3434;3435 3432 4 CQTCTAAFATKDR Unmodified 1528.6762 0.67624638 1094 Q14119 VEZF1 Vascular endothelial zinc finger 1 yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 2 64.059 55.511 2;3 0.001973 6 39252 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.891 55.297 21593000 1949400 0 1732700 1848600 6152300 9909700 1117 1094 1098 5018;5019;5020;5021;5022;5023;5024;5025 3436;3437;3438;3439;3440;3441 3438 6 CQTCTAAFATKDRLR Unmodified 1797.8614 0.86142139 1094 Q14119 VEZF1 Vascular endothelial zinc finger 1 yes yes 0 0 2 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 84.781 77.186 4 0.0024289 3 60083 20150910_Q1_SA_NiHu_Masterprac_group13_C 64.313 51.165 41558000 408110 4429700 5614000 5811200 13784000 11511000 1118 1094 1099 5026;5027;5028;5029;5030;5031 3442;3443;3444 3442 3 CQVASAASYDQPK Unmodified 1423.6402 0.64017845 84 B4DFK4;F5H0N1;E9PFB2;F5H0F9;Q9UJX4 ANAPC5 Anaphase-promoting complex subunit 5 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 72.484 65.139 2 0.0012105 3 47352 20150910_Q1_SA_NiHu_Masterprac_group10_C 76.728 58.104 5430600 556580 629870 599810 409350 1878400 1356500 1119 84 1100 5032;5033;5034;5035;5036;5037 3445;3446;3447 3447 3 CQYVGNCSFAHSPEER Unmodified 1939.7941 0.79412968 1590 Q9UGR2-2;Q9UGR2;I3L2K5;Q8IWR0 ZC3H7B;ZC3H7A Zinc finger CCCH domain-containing protein 7B;Zinc finger CCCH domain-containing protein 7A yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 96.693 87.158 3 0.0024542 3 59640 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.011 47.097 3160800 174040 784910 749170 0 614790 837900 1120 1590 1101 5038;5039;5040;5041;5042 3448;3449;3450 3448 3 CRDCRVVSHPECR Unmodified 1729.7559 0.75591046 1479 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 31.651 27.839 4 0.019148 1 22222 20150910_Q1_SA_NiHu_Masterprac_group13_C 47.712 26.973 2307700 0 576570 1052300 0 0 678810 1121 1479 1102 5043;5044;5045 3451 3451 1 CRDDSFFGETSHNYHK Unmodified 1998.8279 0.82787265 52 P43243;A8MXP9;D6REM6;D6R991;H0Y8T4 MATR3 Matrin-3 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 88.229 77.251 4 0.016149 1 60146 20150910_Q1_SA_NiHu_Masterprac_group13_C 42.257 34.547 5721000 0 0 1610900 1443900 2666100 0 1122 52 1103 5046;5047;5048 3452 3452 1 CRPLEENTADNEK Unmodified 1574.6995 0.69948424 945 P49792;E9PGT0 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 43.25 38.077 3 0.0022761 2 26879 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.989 56.042 20756000 2241200 3947300 5490700 1990900 2500900 4585200 1123 945 1104 5049;5050;5051;5052;5053;5054 3453;3454 3454 2 CRTSGSVYITLKK Unmodified 1511.813 0.81299786 903 P37108;H0YLA2 SRP14 Signal recognition particle 14 kDa protein yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 82.882 75.337 3 1.0969E-15 5 52171 20150910_Q1_SA_NiHu_Masterprac_group15_B 112.42 85.891 22611000 2524900 2037600 5132000 4467100 509110 7940600 1124 903 1105 5055;5056;5057;5058;5059;5060 3455;3456;3457;3458;3459 3457 5 CRVFLQDHCLAEGYGTK Unmodified 2052.951 0.95096468 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 123.58 110.9 4 0.033989 1 79702 20150910_Q1_SA_NiHu_Masterprac_group13_C 37.171 31.356 4052200 489050 0 1589900 0 0 1973200 1125 578 1106 5061;5062;5063 3460 3460 1 CRVFLQDHCLAEGYGTKK Unmodified 2181.0459 0.045927695 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 108.4 98.828 4 0.0038398 2 67395 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.127 48.287 5263900 0 0 1249300 761510 1573500 1679600 1126 578 1107 5064;5065;5066;5067 3461;3462 3461 1 CRVLLCDPEAK Unmodified 1359.6639 0.66389078 1112 Q14690;F5H7X0 PDCD11 Protein RRP5 homolog yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 95.273 85.982 3 0.038334 1 59092 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.081 30.124 1533600 485470 0 0 0 257170 790970 1127 1112 1108 5068;5069;5070 3463 3463 1 CSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAK Unmodified 3944.8639 0.86393039 1135 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 133.52 124.59 5 4.0569E-95 2 86753 20150910_Q1_SA_NiHu_Masterprac_group13_B 99.567 84.583 106680000 0 0 0 70886000 35794000 0 1128 1135 1109 5071;5072 3464;3465 3464 1 CSDNDGIVHIAVDK Unmodified 1541.7144 0.71440603 1638 Q9Y2U8 LEMD3 Inner nuclear membrane protein Man1 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 111.3 102.31 3 0.00092384 3 69739 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.316 52.979 10798000 2144100 3230200 1767700 0 0 3655900 1129 1638 1110 5073;5074;5075;5076 3466;3467;3468 3466 3 CSDNTEVEVSNLENKQPVESTSAK Unmodified 2664.2185 0.21846815 1533 Q9NQW6;Q9NQW6-2;C9JJT6 ANLN Actin-binding protein anillin yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 109.16 106.58 3 9.1451E-09 3 70146 20150910_Q1_SA_NiHu_Masterprac_group10_B 73.672 58.637 12896000 0 6952200 0 0 0 5944000 1130 1533 1111 5077;5078 3469;3470;3471 3471 3 CSECGTAFGQK Unmodified 1243.4962 0.49615675 1131 Q15072 ZNF146 Zinc finger protein OZF yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 59.602 46.82 2 0.0044026 1 38588 20150910_Q1_SA_NiHu_Masterprac_group13_C 77.062 56.285 845170 0 0 845170 0 0 0 1131 1131 1112 5079 3472 3472 1 CSHFPDFSYSASSK Unmodified 1618.6722 0.67220686 238 C9JA69;Q8WY36-2;Q8WY36;C9J8D0;F8W9C0 BBX HMG box transcription factor BBX yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 2 119.45 116.72 3 1.3537E-05 2 79306 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.507 79.661 3989700 0 1220000 0 0 0 2769600 1132 238 1113 5080;5081;5082 3473;3474 3473 1 CSIVRSHSSNSSPIGK Unmodified 1714.8421 0.84206616 1201 Q5UIP0-2;Q5UIP0;H7C2B5 RIF1 Telomere-associated protein RIF1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 55.876 48.709 3 0.014394 1 36300 20150910_Q1_SA_NiHu_Masterprac_group10_C 43.042 33.47 718310 718310 0 0 0 0 0 1133 1201 1114 5083 3475 3475 1 CSLCHQPGHTRPFCPQNR Unmodified 2250.9946 0.9945776 93 B4DSJ0;B4DK80;Q13472-2;Q13472 TOP3A DNA topoisomerase;DNA topoisomerase 3-alpha yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 68.989 60.943 4 0.000569 1 42378 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.615 68.201 8137800 0 0 2743300 1512600 1644500 2237500 1134 93 1115 5084;5085;5086;5087 3476 3476 1 CSLPAEEDSVLEK Unmodified 1475.6814 0.68137456 388 E7EVA0;P27816-6;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 121.29 113.45 2 0.0037239 2 75324 20150910_Q1_SA_NiHu_Masterprac_group10_C 63.185 52.337 12441000 9381600 0 0 3059500 0 0 1135 388 1116 5088;5089 3477;3478 3478 2 CSNPLDTSVKEK Unmodified 1376.6606 0.66057954 852 P17812;B7Z9C4 CTPS1 CTP synthase 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 1 2 70.676 63.962 2;3 1.9695E-18 8 44698 20150910_Q1_SA_NiHu_Masterprac_group15_B 117.03 84.59 35284000 3845700 5844900 4571800 2014900 6134300 12872000 1136 852 1117 5090;5091;5092;5093;5094;5095;5096;5097;5098;5099;5100;5101 3479;3480;3481;3482;3483;3484;3485;3486 3481 8 CSPGSPTDPNATLSK Unmodified 1530.6984 0.69842161 1572 Q9P0K8-2;Q9P0K8 FOXJ2 Forkhead box protein J2 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 74.324 68.659 2 0.025107 1 47770 20150910_Q1_SA_NiHu_Masterprac_group13_B 40.941 22.805 2381200 0 0 0 414660 607150 1359400 1137 1572 1118 5102;5103;5104 3487 3487 1 CSPIGVYTSGK Unmodified 1167.5594 0.55940893 892 P33992;B1AHB1;E7EQY5 MCM5 DNA replication licensing factor MCM5 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 96.787 88.774 2 0.0040752 4 65315 20150910_Q1_SA_NiHu_Masterprac_group15_C 78.903 53.281 56521000 146990 12223000 8141700 3577600 5986000 26445000 1138 892 1119 5105;5106;5107;5108;5109;5110 3488;3489;3490;3491 3490 4 CSPSSSSINNSSSKPTK Unmodified 1766.8105 0.81049126 439 E9PHP9;O15265;H0YAT6;O15265-2 ATXN7 Ataxin-7 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 36.831 32.226 3 0.01973 2 27251 20150910_Q1_SA_NiHu_Masterprac_group15_C 40.014 27.813 4018000 798680 460420 956190 584270 657850 560600 1139 439 1120 5111;5112;5113;5114;5115;5116 3492;3493 3492 2 CSQAVYAAEK Unmodified 1125.5125 0.51245874 859 P21291;E9PND2;B3KVC9;E9PS42;E9PP21 CSRP1 Cysteine and glycine-rich protein 1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 55.097 43.116 2 0.014795 1 35328 20150910_Q1_SA_NiHu_Masterprac_group13_C 68.132 42.015 355820 0 0 355820 0 0 0 1140 859 1121 5117 3494 3494 1 CSQPMVGVSGK Unmodified 1148.5318 0.53181397 31 F5H545;C9JEX3;A6NN98;Q13614 MTMR2 Myotubularin-related protein 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 62.637 60.555 2 0.039251 1 42426 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.568 16.239 962500 0 321670 0 0 0 640830 1141 31 1122 5118;5119 3495 3495 1 CSRCGDSVYAAEK Unmodified 1501.629 0.62896184 1152 Q16527;F8VW96;F8VQR7 CSRP2 Cysteine and glycine-rich protein 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 2 45.152 40.484 2;3 1.5021E-46 8 28234 20150910_Q1_SA_NiHu_Masterprac_group13_B 127.3 102.28 57047000 2372700 11005000 28531000 2920100 2348300 9870000 1142 1152 1123 5120;5121;5122;5123;5124;5125;5126;5127;5128;5129 3496;3497;3498;3499;3500;3501;3502;3503 3497 8 CSTAIATGLK Unmodified 1020.5274 0.52738052 1456 Q9BW19;A2BEW4;A2AB20 KIFC1 Kinesin-like protein KIFC1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 76.205 74.123 2 0.036961 1 51301 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.486 27.515 1963700 0 420570 0 0 0 1543200 1143 1456 1124 5130;5131 3504 3504 1 CSTAIATGLKNQKPVPAVPVQK Unmodified 2306.278 0.27803612 1456 Q9BW19;A2BEW4;A2AB20 KIFC1 Kinesin-like protein KIFC1 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 2 3 2 1 2 117.78 108.36 3;4 2.6887E-06 6 78180 20150910_Q1_SA_NiHu_Masterprac_group13_C 79.676 67.607 34153000 5295700 4584100 9347800 1821400 2655900 10448000 1144 1456 1125 5132;5133;5134;5135;5136;5137;5138;5139;5140;5141;5142;5143 3505;3506;3507;3508;3509;3510 3505 5 CSTVEDSCISSSASEMESCSQNSSAKPVIK Unmodified 3264.3891 0.38905701 361 Q9GZR1-2;Q9GZR1;E7EQN6 SENP6 Sentrin-specific protease 6 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 130.46 112.47 3 0.036035 1 81136 20150910_Q1_SA_NiHu_Masterprac_group13_C 23.69 20.156 3862400 0 0 3862400 0 0 0 1145 361 1126 5144 3511 3511 1 CSVLAAANPVYGR Unmodified 1376.6871 0.68706906 873 P25205 MCM3 DNA replication licensing factor MCM3 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 124.32 123.72 2 0.010285 1 79241 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.261 34.201 441430 0 441430 0 0 0 0 1146 873 1127 5145 3512 3512 1 CSVSSLGFNVH Unmodified 1205.5499 0.54990688 1362 Q92878-2;Q92878;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 130.75 122.48 2 4.8555E-42 4 85929 20150910_Q1_SA_NiHu_Masterprac_group15_B 134.84 105.29 47460000 0 16378000 5655300 3035400 3475000 18916000 1147 1362 1128 5146;5147;5148;5149;5150 3513;3514;3515;3516 3514 4 CTCPVLKGRVQK Unmodified 1444.7643 0.76427353 430 Q12873;E9PG89;Q12873-2;H7C2H0 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 52.288 48.151 3 0.0056254 1 34234 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.659 45.691 5419300 0 1303500 1078000 254230 0 2783600 1148 430 1129 5151;5152;5153;5154 3517 3517 1 CTGGEVGATSALAPK Unmodified 1417.6871 0.68712864 887 P30050;P30050-2 RPL12 60S ribosomal protein L12 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 91.3 85.324 2 0.0027366 4 58340 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.467 39.489 7376200 1182100 1326000 0 413230 2448100 2006800 1149 887 1130 5155;5156;5157;5158;5159 3518;3519;3520;3521 3519 4 CTLAARVDSFHESTEGK Unmodified 1906.8843 0.8843249 1342 Q8WWY3;E7EVX8;Q8WWY3-2;E7ESA8;Q8WWY3-3 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 1 1 102.2 94.234 3;4 1.5672E-21 6 64392 20150910_Q1_SA_NiHu_Masterprac_group15_B 104.16 85.96 79493000 19555000 9066900 9785700 21785000 11387000 7913200 1150 1342 1131 5160;5161;5162;5163;5164;5165;5166;5167;5168;5169 3522;3523;3524;3525;3526;3527 3525 6 CTLCSQPGATIGCEIK Unmodified 1793.811 0.8110253 152 B4E0G4;Q8IWS0;E9PC97;Q5JRC6 PHF6 PHD finger protein 6 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 126.18 116.05 2 0.0036643 2 81506 20150910_Q1_SA_NiHu_Masterprac_group13_C 65.477 48.731 5957200 0 0 3027400 565070 531030 1833700 1151 152 1132 5170;5171;5172;5173 3528;3529 3529 2 CTLCSQPGATIGCEIKACVK Unmodified 2252.0422 0.042164225 152 B4E0G4;Q8IWS0;E9PC97;Q5JRC6 PHF6 PHD finger protein 6 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 131.86 126.54 3 1.187E-65 5 84279 20150910_Q1_SA_NiHu_Masterprac_group10_B 120.9 96.104 33721000 12338000 10177000 0 4798400 0 6408000 1152 152 1133 5174;5175;5176;5177 3530;3531;3532;3533;3534 3532 4 CTSYNIPCTSDMAK Unmodified 1646.6739 0.67386312 354 E7EP00;G5EA31;P53992 SEC24C Protein transport protein Sec24C yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 115.51 107.45 2 9.7496E-05 3 73623 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.624 82.407 8940200 0 1227700 1333900 951790 2158600 3268300 1153 354 1134 5178;5179;5180;5181;5182 3535;3536;3537 3536 3 CTVVSETISSK Unmodified 1209.5911 0.59110299 1217 Q68D10-2;Q68D10 SPTY2D1 Protein SPT2 homolog yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 83.846 77.11 2 0.001691 3 53139 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.697 55.929 3119700 0 1206200 0 0 686660 1226800 1154 1217 1135 5183;5184;5185 3538;3539;3540 3538 3 CTYLVLDEADR Unmodified 1353.6235 0.62346575 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 132.38 122.86 2 2.5002E-55 4 84327 20150910_Q1_SA_NiHu_Masterprac_group10_B 140.78 88.802 85554000 16858000 27740000 7550400 4478500 3615000 25312000 1155 1361;629 1136 5186;5187;5188;5189;5190;5191 3541;3542;3543;3544 3543 3 CVACETPKPGTCVK Unmodified 1605.7313 0.73131842 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 65.179 57.989 2;3 0.0011536 4 40994 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.644 59.95 25789000 3546900 3295500 2733000 2665500 6700800 6847100 1156 531 1137 5192;5193;5194;5195;5196;5197;5198 3545;3546;3547;3548 3546 4 CVACQNPDKPSPSTSVPAPASFK Unmodified 2444.1464 0.1464296 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 117.17 107.84 3 6.9199E-30 8 77948 20150910_Q1_SA_NiHu_Masterprac_group13_C 98.443 73.359 20774000 5766000 489750 2847500 1896500 4299700 5474800 1157 945 1138 5199;5200;5201;5202;5203;5204 3549;3550;3551;3552;3553;3554;3555;3556 3552 7 CVDFQTLK Unmodified 1009.4903 0.49026674 892 P33992;B1AHB1;E7EQY5;B1AHB2 MCM5 DNA replication licensing factor MCM5 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 110.62 100.99 2 0.024294 1 68822 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.221 39.775 13310000 0 0 1738400 849120 1443400 9279400 1158 892 1139 5205;5206;5207;5208 3557 3557 1 CVICGGPGVSDAYYCK Unmodified 1804.7583 0.75826145 1246 Q7RTV0 PHF5A PHD finger-like domain-containing protein 5A yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 127.76 118.03 2 1.9831E-50 3 76956 20150910_Q1_SA_NiHu_Masterprac_group10_C 120.7 108.5 11758000 3550000 2500100 0 0 2388400 3319500 1159 1246 1140 5209;5210;5211;5212 3558;3559;3560 3560 3 CVINATGPFTDSVRK Unmodified 1663.8352 0.83518986 918 P43304;F5GYK7;P43304-2;F8W6E4 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 126.36 123.58 3 1.5152E-13 3 83600 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.43 86.434 3992400 0 1622300 0 0 0 2370100 1160 918 1141 5213;5214 3561;3562;3563 3561 3 CVLPEEDSGELAKPK Unmodified 1670.8185 0.81853675 55 B0AZV0;Q9Y3F4;B4DNJ6 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 109.15 98.612 3 8.7366E-18 2 67199 20150910_Q1_SA_NiHu_Masterprac_group15_B 111.72 75.61 10148000 1210200 1681300 1468400 0 2028800 3759700 1161 55 1142 5215;5216;5217;5218;5219 3564;3565 3564 1 CVPLYHPYQK Unmodified 1303.6383 0.63832796 1602 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 96.855 85.614 3 0.04045 1 58831 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.528 28.15 18073000 1475600 0 2124800 0 5570200 8902100 1162 1602 1143 5220;5221;5222;5223 3566 3566 1 CVRPAGNASFSK Unmodified 1292.6296 0.62955418 400 E9PAY2;E9PAU7;Q9HAJ7 SAP30L Histone deacetylase complex subunit SAP30L yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 54.298 48.282 3 0.0038507 2 34556 20150910_Q1_SA_NiHu_Masterprac_group10_B 67.879 46.847 2865400 0 595840 567580 252300 597280 852370 1163 400 1144 5224;5225;5226;5227;5228 3567;3568 3568 2 CVSAPDLTIEK Unmodified 1231.6118 0.61183843 1318 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 114.77 111.69 2 0.039644 1 73023 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.367 31.723 1588400 0 767510 0 0 0 820890 1164 1318 1145 5229;5230 3569 3569 0 CVSCQNLNPSNK Unmodified 1419.6235 0.62348253 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 64.576 56.679 2 0.0018566 1 40026 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.169 66.582 1561800 0 0 0 0 815190 746640 1165 945 1146 5231;5232 3570 3570 1 CVSQCAAFENPKGLIHGCSK Unmodified 2262.0344 0.034376731 426 E9PFZ0;P38398-4;P38398-2;P38398;E9PFC7;E7EP70;F8W8H7;E7EMP0 BRCA1 Breast cancer type 1 susceptibility protein yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 119.12 111.03 4 0.0015676 2 79783 20150910_Q1_SA_NiHu_Masterprac_group13_C 52.185 43.524 10270000 0 3869800 2347900 0 0 4052400 1166 426 1147 5233;5234;5235 3571;3572 3571 1 CVTCNYCSQLCK Unmodified 1591.6251 0.62513879 1585 Q9UBW7;Q5W0Q3 ZMYM2 Zinc finger MYM-type protein 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 94.204 85.055 2 0.010791 1 58355 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.32 52.703 1466200 0 0 0 0 212150 1254000 1167 1585 1148 5236;5237 3573 3573 1 CVTTELYADSSQLSR Unmodified 1728.7989 0.79886394 1237 Q6W2J9;Q6W2J9-4;Q6W2J9-2;H7BYY2;Q6W2J9-3;A1A564 BCOR BCL-6 corepressor yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.44 130.84 2 6.7363E-105 1 84267 20150910_Q1_SA_NiHu_Masterprac_group10_B 147.12 106.14 3431600 0 3431600 0 0 0 0 1168 1237 1149 5238 3574 3574 1 CWGTAETNVSCPQCR Unmodified 1824.7342 0.73417196 59 B0V297;P14373-2;P14373 TRIM27 Zinc finger protein RFP yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 102.48 92.962 2 0.00066963 5 67749 20150910_Q1_SA_NiHu_Masterprac_group15_C 80.746 76.046 10449000 1206500 0 933430 987280 3423200 3898400 1169 59 1150 5239;5240;5241;5242;5243 3575;3576;3577;3578;3579 3578 5 CYGFVTMSTSDEATK Unmodified 1695.712 0.71202276 1097 Q14151;A8MXT5;C9JPX0;F5GXS4 SAFB2 Scaffold attachment factor B2 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 130.93 122.67 2 1.9483E-199 6 86034 20150910_Q1_SA_NiHu_Masterprac_group15_B 168.67 160.55 39776000 0 5649100 8531600 2537000 5811900 17246000 1170 1097 1151 5244;5245;5246;5247;5248 3580;3581;3582;3583;3584;3585 3582 6 CYGIVTMSSSTEVSR Unmodified 1675.7546 0.75455628 1554 Q9NWH9;H7BXE3;H7C3F4 SLTM SAFB-like transcription modulator yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 127.28 124.5 2 0.0026484 1 84270 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.29 46.768 2045500 0 661770 0 0 0 1383700 1171 1554 1152 5249;5250 3586 3586 1 CYLGATCAYDAAK Unmodified 1462.6221 0.62208554 1338 Q8TEQ6 GEMIN5 Gem-associated protein 5 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 102.77 101.22 2 0.0094432 1 69065 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.139 45.951 3891900 0 997180 0 923330 0 1971400 1172 1338 1153 5251;5252;5253 3587 3587 1 CYRCGETGHVAINCSK Unmodified 1910.8186 0.8185703 112;992 B4DP17;P62633-3;P62633-2;P62633;P62633-5;E9PDR7;P62633-4 CNBP Cellular nucleic acid-binding protein no no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 2 1 2 59.445 54.235 3;4 2.7829E-37 6 38822 20150910_Q1_SA_NiHu_Masterprac_group10_B 113.11 103.54 108950000 15604000 20529000 6047300 30696000 8293700 27776000 1173 112;992 1154 5254;5255;5256;5257;5258;5259;5260;5261;5262;5263 3588;3589;3590;3591;3592;3593 3592 6 CYSCGEFGHIQK Unmodified 1484.6177 0.61766887 112;992 B4DP17;P62633-3;P62633-2;P62633;P62633-5;E9PDR7;P62633-4 CNBP Cellular nucleic acid-binding protein no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 89.427 81.715 2;3 0.00028541 9 55740 20150910_Q1_SA_NiHu_Masterprac_group10_B 94.82 85.93 100970000 6934600 15965000 16897000 12104000 20563000 28512000 1174 112;992 1155 5264;5265;5266;5267;5268;5269;5270;5271;5272;5273;5274;5275 3594;3595;3596;3597;3598;3599;3600;3601;3602 3600 9 DAALATALGDK Unmodified 1044.5451 0.54513908 406 E9PBF6;P20700 LMNB1 Lamin-B1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 103.72 102.31 2 0.011767 1 67491 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.799 34.103 1313600 0 1313600 0 0 0 0 1175 406 1156 5276 3603 3603 1 DACELIER Unmodified 1004.4597 0.45969489 615 Q96EY4;H0Y9X1;D6RA57;D6RE67;D6RC31 TMA16 Translation machinery-associated protein 16 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1 94.196 86.118 2 0.012377 4 65032 20150910_Q1_SA_NiHu_Masterprac_group13_C 90.601 54.154 28458000 3503900 5072900 3430100 2638000 4432200 9380700 1176 615 1157 5277;5278;5279;5280;5281;5282;5283 3604;3605;3606;3607 3605 4 DAEAAEATAEGALKAEK Unmodified 1673.8108 0.81080883 224 C9J7T7;C9JE98;C9J239;Q9Y618-5;C9J0Q5;Q9Y618-4;C9JJF6;C9JFD3;Q9Y618-3;Q9Y618;C9JQE8 NCOR2 Nuclear receptor corepressor 2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 2 115.82 113.04 2;3 0.0032995 3 73511 20150910_Q1_SA_NiHu_Masterprac_group10_B 51.127 51.127 5479200 0 2372000 0 0 0 3107200 1177 224 1158 5284;5285;5286;5287 3608;3609;3610 3610 3 DAEAWFNEK Unmodified 1108.4825 0.48253882 298 P13645;CON__P13645;Q7Z3Y7;CON__Q148H6;CON__Q7Z3Y7;Q7Z3Z0;CON__Q7Z3Z0;Q7Z3Y8;CON__Q7Z3Y8 KRT10;KRT28;KRT25;KRT27 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 2 2 128.31 117.82 1;2 1.5845E-272 7 82629 20150910_Q1_SA_NiHu_Masterprac_group13_C 199.46 199.46 287510000 14363000 42137000 164420000 18809000 9440000 38336000 + 1178 298 1159 5288;5289;5290;5291;5292;5293;5294;5295;5296;5297;5298 3611;3612;3613;3614;3615;3616;3617 3613 7 DAEAWFNEKSK Unmodified 1323.6095 0.60953025 298 P13645;CON__P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 2 2 1 1 2 106.65 98.88 2;3 0.00078258 2 72479 20150910_Q1_SA_NiHu_Masterprac_group13_C 98.156 77.148 36883000 0 8868500 17164000 3767000 1531200 5552200 + 1179 298 1160 5299;5300;5301;5302;5303;5304;5305;5306 3618;3619 3618 2 DAEDALHNLDRK Unmodified 1395.6743 0.67425577 743 O75494-5;Q5JRI1;O75494-4;Q5JRI3;O75494-3;O75494-2;O75494 SRSF10 Serine/arginine-rich splicing factor 10 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 93.22 85.392 3 0.00092794 7 58050 20150910_Q1_SA_NiHu_Masterprac_group13_B 78.548 49.477 16068000 864020 7044300 1568000 676400 1217600 4698000 1180 743 1161 5307;5308;5309;5310;5311;5312 3620;3621;3622;3623;3624;3625;3626 3620 6 DAEEEGGDQAGQNIR Unmodified 1587.6761 0.67610626 1356 Q92620;H3BQT9;H3BV01 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 51.633 49.851 2 0.017521 1 35449 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.69 30.101 794050 0 263390 0 0 0 530660 1181 1356 1162 5313;5314 3627 3627 1 DAEEEGGDQAGQNIRK Unmodified 1715.7711 0.77106928 1356 Q92620;H3BQT9;H3BV01 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 47.272 41.766 3 0.0014288 4 31529 20150910_Q1_SA_NiHu_Masterprac_group10_C 62.287 52.718 11245000 863510 1826500 1568300 934230 1125300 4927200 1182 1356 1163 5315;5316;5317;5318;5319;5320 3628;3629;3630;3631 3631 4 DAEGGPGAWRLSR Unmodified 1370.6691 0.66911081 1378 Q96E14 RMI2 RecQ-mediated genome instability protein 2 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 108.83 98.35 3 0.037204 2 72394 20150910_Q1_SA_NiHu_Masterprac_group13_C 42.425 23.459 5493300 385530 284940 1216800 0 411000 3195000 1183 1378 1164 5321;5322;5323;5324;5325 3632;3633 3633 2 DAEGLAARDVQK Unmodified 1271.647 0.64697839 1393 Q96HW7;Q96HW7-2;Q96HW7-3 INTS4 Integrator complex subunit 4 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 64.419 58.561 2 0.00014614 7 41661 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.732 50.266 9113300 2078500 1203500 0 1571600 1473300 2786500 1184 1393 1165 5326;5327;5328;5329;5330;5331 3634;3635;3636;3637;3638;3639;3640 3636 7 DAEGSTCLHLAAK Unmodified 1371.6453 0.64526383 1507 Q9H9B1-3;Q9H9B1;C9JD67 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 86.299 77.225 2 0.0018991 2 53329 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.082 61.15 4325100 335370 1458100 491590 0 934780 1105300 1185 1507 1166 5332;5333;5334;5335;5336 3641;3642 3641 2 DAEMNELRTK Unmodified 1205.571 0.57103625 176 C9IZM8;B5MEB7;Q8WXE1-3;Q8WXE1-2;Q8WXE1;F8WE08 ATRIP ATR-interacting protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 64.147 57.779 3 0.011082 1 40953 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.2 40.33 1179900 0 93376 0 0 348830 737730 1186 176 1167 5337;5338;5339 3643 3643 1 DAERAINTLNGLR Unmodified 1441.7637 0.76373948 1146 Q15717 ELAVL1 ELAV-like protein 1 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 2 1 2 125.36 120.93 3 0.019064 4 77121 20150910_Q1_SA_NiHu_Masterprac_group10_C 49.356 24.843 23045000 6447900 2955900 0 903840 0 12737000 1187 1146 1168 5340;5341;5342;5343;5344;5345 3644;3645;3646;3647 3647 4 DAERAINTLNGLRLQSK Unmodified 1898.0334 0.033372399 1146 Q15717 ELAVL1 ELAV-like protein 1 yes yes 0 0 2 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 2 1 132.39 119.91 3 0 4 84318 20150910_Q1_SA_NiHu_Masterprac_group10_B 220.72 171.65 624710000 68457000 261640000 117830000 0 32130000 144640000 1188 1146 1169 5346;5347;5348;5349;5350;5351 3648;3649;3650;3651 3650 4 DAFADAVQR Unmodified 991.47231 0.47230849 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1 93.134 84.073 2 0.0019716 7 63646 20150910_Q1_SA_NiHu_Masterprac_group13_C 106.68 29.15 1291800000 177640000 155580000 149740000 73293000 261130000 474400000 1189 1366 1170 5352;5353;5354;5355;5356;5357;5358;5359 3652;3653;3654;3655;3656;3657;3658 3653 7 DAFADAVQRAR Unmodified 1218.6105 0.6105333 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 3 4 3 2 107.07 98.119 2;3 4.737E-13 11 65141 20150910_Q1_SA_NiHu_Masterprac_group10_B 118.23 64.477 622020000 91100000 138480000 136500000 84871000 85495000 85577000 1190 1366 1171 5360;5361;5362;5363;5364;5365;5366;5367;5368;5369;5370;5371;5372;5373;5374;5375;5376 3659;3660;3661;3662;3663;3664;3665;3666;3667;3668;3669 3667 11 DAGLSFKDDMPK Unmodified 1322.6177 0.61765209 345 E5RJW4;Q9NW64;E5RHA8;Q9NW64-2;F5GWK3 RBM22 Pre-mRNA-splicing factor RBM22 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 130.72 115.03 2 0.0071925 1 76363 20150910_Q1_SA_NiHu_Masterprac_group10_C 73.219 36.548 1169600 1169600 0 0 0 0 0 1191 345 1172 5377 3670 3670 1 DAIPENLPPLTADFAEDKDVCK Unmodified 2457.1734 0.17335586 294 CON__P02769 yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 2 1 135.19 124.88 3 1.0607E-91 4 82599 20150910_Q1_SA_NiHu_Masterprac_group15_C 126.29 115.37 2514200000 14801000 0 279370000 13073000 2207000000 0 + 1192 294 1173 5378;5379;5380;5381;5382 3671;3672;3673;3674 3673 4 DAIPENLPPLTADFAEDKDVCKNYQEAK Unmodified 3190.5129 0.51285926 294 CON__P02769 yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 133.38 115.53 4 0.000102 1 82451 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.851 32.483 24242000 0 0 0 0 24242000 0 + 1193 294 1174 5383 3675 3675 1 DAKEIPSATQSPISK Unmodified 1570.8203 0.82025131 682 I3L1L3;Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 90.666 84.67 3 8.4016E-06 2 58311 20150910_Q1_SA_NiHu_Masterprac_group10_C 92.952 76.712 11964000 6090600 544260 0 2874100 1681800 772830 1194 682 1175 5384;5385;5386;5387;5388 3676;3677 3677 2 DAKEQVSPLETTLEK Unmodified 1686.8676 0.86759543 1362 Q92878-2;Q92878;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 122.84 114.1 2;3 3.8491E-87 9 75821 20150910_Q1_SA_NiHu_Masterprac_group10_C 141.59 106.66 36175000 13980000 2880000 12329000 2468700 670500 3847000 1195 1362 1176 5389;5390;5391;5392;5393;5394;5395;5396;5397;5398;5399 3678;3679;3680;3681;3682;3683;3684;3685;3686 3686 8 DALAALETPGRPSQQK Unmodified 1680.8795 0.87949752 1351 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 1 116.5 107.32 2;3 1.578E-06 7 77628 20150910_Q1_SA_NiHu_Masterprac_group13_C 91.616 59.702 63341000 13122000 10876000 11786000 6749400 3837800 16969000 1196 1351 1177 5400;5401;5402;5403;5404;5405;5406;5407;5408;5409;5410 3687;3688;3689;3690;3691;3692;3693 3689 5 DALDPRQPGYQPPNPHPGPSSPPAAPASK Unmodified 2945.442 0.442018 1450 Q9BUL9 RPP25 Ribonuclease P protein subunit p25 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 110.87 107.11 4 0.037864 1 73377 20150910_Q1_SA_NiHu_Masterprac_group15_B 28.215 21.105 2192600 0 0 0 0 0 2192600 1197 1450 1178 5411 3694 3694 0 DALLAGLKQDEPGQAGSQK Unmodified 1924.9854 0.98541915 1215 Q68CP9-3;Q68CP9;F8VWP4;Q68CP9-2;E7ENG3;F8W108;F8WCU9 ARID2 AT-rich interactive domain-containing protein 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 127.63 116.34 2;3 5.7197E-38 6 76964 20150910_Q1_SA_NiHu_Masterprac_group10_C 109.87 92.169 46523000 22681000 4305300 14533000 3044700 1958500 0 1198 1215 1179 5412;5413;5414;5415;5416;5417 3695;3696;3697;3698;3699;3700 3700 6 DAMEQCHNYNAR Unmodified 1507.5932 0.59324503 1359 Q92785;B4DT58;E9PN04 DPF2 Zinc finger protein ubi-d4 yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 2 49.094 44.051 2;3 9.7763E-28 4 31565 20150910_Q1_SA_NiHu_Masterprac_group15_B 124.67 123.48 7794800 715100 1074500 1074200 756210 1390700 2784200 1199 1359 1180 5418;5419;5420;5421;5422;5423;5424 3701;3702;3703;3704 3703 4 DANLYISGLPRTMTQK Unmodified 1806.9298 0.92981853 1146 Q15717 ELAVL1 ELAV-like protein 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 133.01 132.41 3 0.0020403 1 86021 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.884 27.732 7331800 0 7331800 0 0 0 0 1200 1146 1181 5425 3705 3705 1 DAPVDHLGTEHCYDSSAPPK Unmodified 2194.9589 0.95894641 636 H3BPD5;P78549;H3BRL9 NTHL1 Endonuclease III-like protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 96.492 89.556 3 0.012668 1 61353 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.996 28.168 2350900 0 218620 0 0 716440 1415800 1201 636 1182 5426;5427;5428 3706 3706 1 DAPVHGSPTGPGAWTASK Unmodified 1734.8325 0.83254733 1442 Q9BRP1 PDCD2L Programmed cell death protein 2-like yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 2 97.164 92.531 2;3 0.0014522 5 62243 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.374 49.809 17687000 0 2323500 0 1697700 6374900 7290500 1202 1442 1183 5429;5430;5431;5432;5433;5434 3707;3708;3709;3710;3711 3710 5 DAQDAEAAMDGAELDGR Unmodified 1733.7163 0.71625652 1441 Q9BRL6-2;Q9BRL6 SRSF8 Serine/arginine-rich splicing factor 8 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 123.9 112.07 2 0.0020874 3 79839 20150910_Q1_SA_NiHu_Masterprac_group13_C 55.267 55.267 4437000 1535300 952910 1948700 0 0 0 1203 1441 1184 5435;5436;5437 3712;3713;3714 3712 3 DAQDAEAAMDGAELDGRELR Unmodified 2131.944 0.94402462 1441 Q9BRL6-2;Q9BRL6 SRSF8 Serine/arginine-rich splicing factor 8 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 131.1 131.1 3 0.0087584 1 84112 20150910_Q1_SA_NiHu_Masterprac_group13_B 41.912 27.608 3104900 0 0 0 3104900 0 0 1204 1441 1185 5438 3715 3715 1 DAQPSFSAEDIAK Unmodified 1377.6412 0.64122431 873 P25205 MCM3 DNA replication licensing factor MCM3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 1 124.36 113.7 2 0.0013926 5 80760 20150910_Q1_SA_NiHu_Masterprac_group13_C 75.764 43.51 60892000 8243800 5733100 8066700 1807900 21898000 15142000 1205 873 1186 5439;5440;5441;5442;5443;5444;5445 3716;3717;3718;3719;3720 3716 5 DAQPSFSAEDIAKIK Unmodified 1618.8203 0.82025131 873 P25205 MCM3 DNA replication licensing factor MCM3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 1 1 132.45 122.85 2;3 2.7416E-20 5 84899 20150910_Q1_SA_NiHu_Masterprac_group10_B 109.07 82.363 100100000 18086000 31821000 19562000 0 7300200 23327000 1206 873 1187 5446;5447;5448;5449;5450;5451 3721;3722;3723;3724;3725 3724 4 DAQPSFSAEDIAKIKK Unmodified 1746.9152 0.91521432 873 P25205 MCM3 DNA replication licensing factor MCM3 yes yes 0 0 2 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 130.58 113.44 3 2.2709E-26 4 81203 20150910_Q1_SA_NiHu_Masterprac_group13_C 110.35 84.924 94395000 36421000 0 33341000 0 24632000 0 1207 873 1188 5452;5453;5454 3726;3727;3728;3729 3726 4 DAQQDLNLDIEK Unmodified 1400.6783 0.6783381 936 P49454 CENPF Centromere protein F yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 125.74 122.95 2 0.0017862 2 78754 20150910_Q1_SA_NiHu_Masterprac_group10_B 77.644 45.349 3016700 0 1502400 0 0 0 1514300 1208 936 1189 5455;5456 3730;3731 3731 2 DASAQQDSYEFVSPSPPADVSERAK Unmodified 2680.2253 0.22526809 386 E7EUI3;Q99728 BARD1 BRCA1-associated RING domain protein 1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 131.34 122.04 3 2.0637E-64 3 82568 20150910_Q1_SA_NiHu_Masterprac_group13_C 109.41 100.26 15229000 0 4901200 10327000 0 0 0 1209 386 1190 5457;5458 3732;3733;3734 3732 3 DASGQPIFNASAK Unmodified 1304.6361 0.63607935 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 95.412 89.206 2 0.01657 2 67112 20150910_Q1_SA_NiHu_Masterprac_group13_C 50.659 32.826 8417600 1015600 196600 1865900 1280200 0 4059300 1210 578 1191 5459;5460;5461;5462;5463 3735;3736 3735 2 DASLVTNEDHQR Unmodified 1383.6379 0.63787026 936 P49454 CENPF Centromere protein F yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 51.298 50.77 2 3.0473E-07 1 36299 20150910_Q1_SA_NiHu_Masterprac_group15_B 102.97 83.19 1633100 0 0 0 111670 0 1521500 1211 936 1192 5464;5465 3737 3737 1 DASLVVTTSGDHKAK Unmodified 1527.7893 0.78928553 241 C9JG97;Q13685;C9JEH3;H7C0R2 AAMP Angio-associated migratory cell protein yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 68.056 53.718 3 0.0092177 1 43730 20150910_Q1_SA_NiHu_Masterprac_group15_C 47.622 32.633 519720 0 0 0 0 519720 0 1212 241 1193 5466 3738 3738 1 DASRCSEQPSISDIKEK Unmodified 1948.916 0.91601896 1107 Q14527;Q14527-2;E7ESN4;F5H3D6 HLTF Helicase-like transcription factor yes no 0 0 2 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 3 2 1 2 2 83.65 75.837 3;4 0.00040103 7 52219 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.772 70.415 45444000 3343300 11554000 10552000 1721600 4645900 13626000 1213 1107 1194 5467;5468;5469;5470;5471;5472;5473;5474;5475;5476;5477;5478 3739;3740;3741;3742;3743;3744;3745 3742 7 DASSTYSQVENLNR Unmodified 1582.7223 0.72232817 1587 Q9UFC0;H7C5S6 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 112.75 102.7 2 1.2037E-12 2 70166 20150910_Q1_SA_NiHu_Masterprac_group15_B 102.5 84.092 4519100 0 1168900 617200 0 418330 2314600 1214 1587 1195 5479;5480;5481;5482 3746;3747 3746 2 DAVCSGVTGAANVAK Unmodified 1418.6824 0.68237762 1413 Q96Q06-2;Q96Q06 PLIN4 Perilipin-4 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 94.106 86.21 2 0.00068273 4 58555 20150910_Q1_SA_NiHu_Masterprac_group10_B 74.853 49.659 9562800 995880 1718000 1348900 849880 1370400 3279800 1215 1413 1196 5483;5484;5485;5486;5487;5488 3748;3749;3750;3751 3750 4 DAVEAYQLAQR Unmodified 1262.6255 0.62551466 1207 Q5VVJ2;Q5VVJ2-2 MYSM1 Histone H2A deubiquitinase MYSM1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 109.84 101.86 2 1.317E-29 3 69548 20150910_Q1_SA_NiHu_Masterprac_group15_B 126.19 96.427 5629000 0 911410 530670 397330 452420 3337200 1216 1207 1197 5489;5490;5491;5492;5493 3752;3753;3754 3753 3 DAVEDLESVGK Unmodified 1160.5561 0.55609769 1013;1014 P81605;P81605-2 DCD Dermcidin;Survival-promoting peptide;DCD-1 no no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 125.86 120.55 2 0.0065827 4 77767 20150910_Q1_SA_NiHu_Masterprac_group13_B 69.864 48.468 54252000 12801000 28757000 0 2754100 0 9939800 1217 1013;1014 1198 5494;5495;5496;5497 3755;3756;3757;3758 3755 3 DAVEDLESVGKGAVHDVK Unmodified 1866.9323 0.93232095 1013 P81605 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.52 131.91 3 9.6717E-74 1 85434 20150910_Q1_SA_NiHu_Masterprac_group10_B 127.29 107.84 26482000 0 26482000 0 0 0 0 1218 1013 1199 5498 3759 3759 1 DAVEDLESVGKGGEER Unmodified 1688.7853 0.78532236 1014 P81605-2 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 125.26 115.96 3 0.00025169 3 81500 20150910_Q1_SA_NiHu_Masterprac_group13_C 71.354 44.601 10148000 0 3366800 6780800 0 0 0 1219 1014 1200 5499;5500 3760;3761;3762 3760 3 DAVIQDLER Unmodified 1057.5404 0.54038805 1343 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-5;Q8WX93-4;Q8WX93-2;Q8WX93-9 PALLD Palladin yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 112.15 110.54 2 0.0067401 1 72498 20150910_Q1_SA_NiHu_Masterprac_group10_B 96.342 53.034 2488800 0 2488800 0 0 0 0 1220 1343 1201 5501 3763 3763 1 DAVSTGLTGAVNVAK Unmodified 1401.7464 0.74635808 1413 Q96Q06-2;Q96Q06 PLIN4 Perilipin-4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 128.7 128.4 2 0.0026215 1 82239 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.861 27.135 7889600 0 7315000 0 574620 0 0 1221 1413 1202 5502;5503 3764 3764 1 DAVSTGLTGAVNVAR Unmodified 1429.7525 0.75250609 1413 Q96Q06-2;Q96Q06 PLIN4 Perilipin-4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 130.91 130.31 2 2.4458E-05 1 83671 20150910_Q1_SA_NiHu_Masterprac_group10_B 76.82 48.853 7952600 0 7952600 0 0 0 0 1222 1413 1203 5504 3765 3765 0 DAVTTGVTGAVNVAK Unmodified 1401.7464 0.74635808 1413 Q96Q06-2;Q96Q06 PLIN4 Perilipin-4 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1 2 123.41 113.51 2 6.6622E-21 6 80551 20150910_Q1_SA_NiHu_Masterprac_group13_C 110.55 57.582 34257000 9101100 3203800 10476000 1532000 3859900 6083800 1223 1413 1204 5505;5506;5507;5508;5509;5510;5511;5512 3766;3767;3768;3769;3770;3771 3767 6 DAYLQSLAK Unmodified 1007.5288 0.52876073 749 O75683 SURF6 Surfeit locus protein 6 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 117.46 106.74 2 0.011126 2 77358 20150910_Q1_SA_NiHu_Masterprac_group13_C 83.647 28.535 13344000 2267800 0 2288400 2406700 2724500 3656600 1224 749 1205 5513;5514;5515;5516;5517 3772;3773 3772 2 DAYSSFGSR Unmodified 988.42502 0.42502394 693 O00571;O00571-2;B4DLU5;B4E3C4;B4DXX7;O15523;B4DLA0;C9J081;B4E132;C9J8G5 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 76.297 69.203 2 0.0065883 4 48780 20150910_Q1_SA_NiHu_Masterprac_group10_B 91.265 82.352 27403000 1095900 6129300 0 0 8505800 11672000 1225 693 1206 5518;5519;5520;5521 3774;3775;3776;3777 3776 4 DAYSSFGSRSDSR Unmodified 1433.6171 0.61713482 693 O00571;O00571-2;B4DLU5;B4E3C4;B4DLA0 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 69.761 61.688 3 0.035566 1 49690 20150910_Q1_SA_NiHu_Masterprac_group13_C 42.976 28.185 4828200 0 0 1016500 756640 1028000 2027000 1226 693 1207 5522;5523;5524;5525 3778 3778 1 DAYSSFGSRSDSRGK Unmodified 1618.7336 0.73356156 693 O00571;O00571-2;B4DLU5;B4E3C4;B4DLA0 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 57.466 50.991 3 0.0077185 2 36440 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.227 45.482 51133000 5076500 8646000 11559000 9447100 5902700 10503000 1227 693 1208 5526;5527;5528;5529;5530;5531 3779;3780 3779 2 DCASRVNNASYCPHCGEESSK Unmodified 2426.9638 0.96379056 1507 Q9H9B1-3;Q9H9B1;Q9H9B1-4;C9JD67;Q9H9B1-2 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 61.978 54.095 4 0.0053808 1 44693 20150910_Q1_SA_NiHu_Masterprac_group13_C 45.069 45.069 14690000 0 2091700 6321500 2397700 3879000 0 1228 1507 1209 5532;5533;5534;5535 3781 3781 1 DCASRVNNASYCPHCGEESSKAK Unmodified 2626.0959 0.095867368 1507 Q9H9B1-3;Q9H9B1;Q9H9B1-4;C9JD67;Q9H9B1-2 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching 2 1 1 58.803 48.614 4 0.0041446 2 40539 20150910_Q1_SA_NiHu_Masterprac_group13_C 44.743 43.96 3821400 1403200 0 1767600 0 650510 0 1229 1507 1210 5536;5537;5538;5539 3782;3783 3782 2 DCDLQEDACYNCGR Unmodified 1774.6345 0.6345175 112 B4DP17;P62633-3;P62633-2;P62633 CNBP Cellular nucleic acid-binding protein yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 89.882 82.422 2 0.001987 1 55986 20150910_Q1_SA_NiHu_Masterprac_group13_B 66.004 66.004 6597600 0 985860 832670 855090 770800 3153200 1230 112 1211 5540;5541;5542;5543;5544 3784 3784 1 DCDLQEDACYNCGRGGHIAK Unmodified 2337.9525 0.95249759 112 B4DP17;P62633-3;P62633-2;P62633 CNBP Cellular nucleic acid-binding protein yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 87.426 78.779 4 0.00098401 1 59270 20150910_Q1_SA_NiHu_Masterprac_group15_C 54.412 52.777 65759000 0 0 17621000 13280000 16427000 18430000 1231 112 1212 5545;5546;5547;5548 3785 3785 1 DCDLQEDEACYNCGRGGHIAK Unmodified 2466.9951 0.99509069 992 P62633-4 CNBP Cellular nucleic acid-binding protein yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 92.014 83.565 3;4 3.5935E-09 7 63589 20150910_Q1_SA_NiHu_Masterprac_group13_C 83.792 77.565 33613000 6871800 5042000 8467600 2414500 3063400 7753900 1232 992 1213 5549;5550;5551;5552;5553;5554;5555;5556;5557;5558;5559 3786;3787;3788;3789;3790;3791;3792 3787 7 DCELENQEAHEQDGNDELK Unmodified 2271.9186 0.91859773 1554 Q9NWH9;H7BXE3;H0YL55;H0YKU6 SLTM SAFB-like transcription modulator yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 87.607 80.147 3 0.0092103 4 60086 20150910_Q1_SA_NiHu_Masterprac_group15_C 40.798 39.168 19468000 0 4949000 2170700 2325600 5192900 4829500 1233 1554 1214 5560;5561;5562;5563;5564 3793;3794;3795;3796 3794 4 DCHCLGDVLIENTKESK Unmodified 2016.9245 0.92447516 1219 Q69YH5;E9PEI0 CDCA2 Cell division cycle-associated protein 2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 119.54 118.94 3 0.0011443 1 76569 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.525 48.578 1442700 0 1442700 0 0 0 0 1234 1219 1215 5565 3797 3797 0 DCLETTKNQGEYCPK Unmodified 1841.7924 0.79239835 1250 Q7Z333-3;Q7Z333;Q7Z333-4 SETX Probable helicase senataxin yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 72.899 65.521 3 0.0079291 2 51162 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.333 39.643 10073000 674000 1472400 3060500 1063800 1210500 2592200 1235 1250 1216 5566;5567;5568;5569;5570;5571 3798;3799 3799 2 DCNPEVSESFKVK Unmodified 1537.7083 0.70825802 513 Q6ZRS4-3;Q6ZRS4;F5H2J8;F5H3V5 CCDC129 Coiled-coil domain-containing protein 129 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 62.062 60.908 3 0.0027791 1 42671 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.237 29.39 1073800 0 0 0 0 0 1073800 1236 513 1217 5572 3800 3800 0 DCQELASISVGSGSRPSSDLQAR Unmodified 2419.1398 0.13976432 1422 Q96T58 SPEN Msx2-interacting protein yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.62 125.66 3 0.0022099 1 85385 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.226 25.273 3599100 0 0 0 0 0 3599100 1237 1422 1218 5573 3801 3801 1 DCRYALYDATYETK Unmodified 1767.7774 0.77740021 461 E9PP50;P23528;G3V1A4;E9PK25;E9PQB7;E9PLJ3;G3V5P4;Q9Y281 CFL1;CFL2 Cofilin-1;Cofilin-2 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 2 1 1 1 2 122.4 114.58 2;3 0.0011276 4 74913 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.911 63.393 21986000 3321000 4819800 7002200 719090 940110 5183300 1238 461 1219 5574;5575;5576;5577;5578;5579;5580;5581 3802;3803;3804;3805 3805 4 DCRYALYDATYETKESK Unmodified 2111.947 0.94698474 461 E9PP50;P23528;G3V1A4;E9PK25;E9PQB7;E9PLJ3;G3V5P4;Q9Y281 CFL1;CFL2 Cofilin-1;Cofilin-2 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 112.58 103.34 3 0.029536 1 75239 20150910_Q1_SA_NiHu_Masterprac_group13_C 43.752 36.979 2847700 530940 282980 1229700 0 0 804040 1239 461 1220 5582;5583;5584;5585 3806 3806 1 DCSRLTNGPSNGSSSR Unmodified 1693.7438 0.74380867 1125 Q15007 WTAP Pre-mRNA-splicing regulator WTAP yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 42.46 36.795 3 0.030409 1 26034 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.461 48.181 1000400 0 0 333970 0 0 666460 1240 1125 1221 5586;5587 3807 3807 0 DCVSPSEYTAACSR Unmodified 1601.645 0.64500583 466 E9PQR7;Q9UK41;Q9UK41-2 VPS28 Vacuolar protein sorting-associated protein 28 homolog yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 91.099 83.639 2 0.0018707 4 62050 20150910_Q1_SA_NiHu_Masterprac_group15_C 66.708 63.204 4785400 0 855590 485980 459570 1427900 1556400 1241 466 1222 5588;5589;5590;5591;5592 3808;3809;3810;3811 3811 4 DDAEVERLTCEEEEEK Unmodified 1979.8266 0.82659483 952;951 P51531-2;P51531;P51532-5;P51532-2;P51532-3;P51532-4;P51532;Q9HBD4;F5H0X5;H0YGM3 SMARCA2;SMARCA4 Probable global transcription activator SNF2L2;Transcription activator BRG1 no no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 109.38 101.86 3 0.0033886 1 67500 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.059 66.059 8875600 0 3038900 1479500 0 0 4357100 1242 951;952 1223 5593;5594;5595 3812 3812 1 DDAQSVETLGKPK Unmodified 1386.6991 0.69907354 1345 Q8WYP5;Q8WYP5-3;Q8WYP5-2 AHCTF1 Protein ELYS yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 2 1 80.146 71.084 2 0.0057852 3 54740 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.314 31.79 2700800 0 741190 0 0 853920 1105700 1243 1345 1224 5596;5597;5598;5599 3813;3814;3815 3814 3 DDAQSVETLGKPKAK Unmodified 1585.8312 0.83115034 1345 Q8WYP5;Q8WYP5-3;Q8WYP5-2 AHCTF1 Protein ELYS yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 68.211 61 3 0.0023578 5 42872 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.911 57.816 10942000 1449100 2375300 1997300 845590 2104400 2170800 1244 1345 1225 5600;5601;5602;5603;5604;5605 3816;3817;3818;3819;3820 3819 5 DDCVNTVTGISSGTDGFRSENDTNWDPQK Unmodified 3214.3745 0.37452787 1492 Q9H582-2;Q9H582;F5H7T9 ZNF644 Zinc finger protein 644 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.36 131.75 3 0.0053864 1 85287 20150910_Q1_SA_NiHu_Masterprac_group10_B 33.663 27.171 7547600 0 7547600 0 0 0 0 1245 1492 1226 5606 3821 3821 1 DDDEPGPWTK Unmodified 1158.4829 0.48293275 175 B5ME40;F5GXG0;Q96T88 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 86.263 80.623 2 0.012231 1 55092 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.412 59.247 1701800 579800 1122000 0 0 0 0 1246 175 1227 5607;5608 3822 3822 1 DDEVQVVRGHYK Unmodified 1443.7106 0.71064128 343 E5RIT6;Q9UNX3;P61254 RPL26L1;RPL26 60S ribosomal protein L26-like 1;60S ribosomal protein L26 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 77.361 67.235 3 0.0067285 3 48329 20150910_Q1_SA_NiHu_Masterprac_group10_C 62.633 39.118 8138100 2115900 0 1493000 1427200 3102000 0 1247 343 1228 5609;5610;5611;5612 3823;3824;3825 3825 2 DDGGIIICEAQNQALPSGHSK Unmodified 2209.0433 0.043344738 1328 Q8NFZ8 CADM4 Cell adhesion molecule 4 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 132.38 114.51 3 0.0064213 1 83381 20150910_Q1_SA_NiHu_Masterprac_group13_C 42.226 15.336 63556000 0 0 57943000 0 5612800 0 1248 1328 1229 5613;5614 3826 3826 1 DDGVFKAPAPPSKVIK Unmodified 1667.9247 0.9246568 1253 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 WAPAL Wings apart-like protein homolog yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 129.14 113.45 3 3.7778E-10 2 80100 20150910_Q1_SA_NiHu_Masterprac_group13_C 95.755 72.764 10481000 10481000 0 0 0 0 0 1249 1253 1230 5615;5616 3827;3828 3827 2 DDINLLPSK Unmodified 1013.5393 0.53932542 1611 Q9ULW0 TPX2 Targeting protein for Xklp2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 2 1 1 1 127.04 116.36 2 4.8373E-05 4 82082 20150910_Q1_SA_NiHu_Masterprac_group13_C 112.85 72.787 62341000 12706000 8053900 24026000 4782200 2345000 10429000 1250 1611 1231 5617;5618;5619;5620;5621;5622;5623 3829;3830;3831;3832 3829 4 DDINLLPSKSSVTK Unmodified 1515.8144 0.81443765 1611 Q9ULW0 TPX2 Targeting protein for Xklp2 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 120.77 111.77 3 0.004894 1 80231 20150910_Q1_SA_NiHu_Masterprac_group13_C 57.034 20.081 7128600 0 0 5469200 1659400 0 0 1251 1611 1232 5624;5625 3833 3833 1 DDIPEEDKGNVK Unmodified 1357.6361 0.63613893 1106 Q14331;E9PLY7;Q9BZ01 FRG1;FRG1B Protein FRG1;Protein FRG1B yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 56.351 50.451 3 0.008017 2 35913 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.213 37.459 4819700 0 1262600 0 0 1044700 2512400 1252 1106 1233 5626;5627;5628 3834;3835 3834 2 DDIRLLPSALGVKK Unmodified 1523.9035 0.90352742 430 Q12873;E9PG89;Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 132.58 129.8 3 4.628E-29 2 85213 20150910_Q1_SA_NiHu_Masterprac_group10_B 113.53 92.282 40030000 0 13599000 0 0 0 26431000 1253 430 1234 5629;5630 3836;3837 3837 2 DDMDFAGNVKK Unmodified 1238.5601 0.56013721 1037 Q03701;F5H3Y6 CEBPZ CCAAT/enhancer-binding protein zeta yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 2 1 1 2 86.242 79.137 2;3 0.0046838 3 54352 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.19 39.301 8353700 914930 1896000 682260 0 1428800 3431700 1254 1037 1235 5631;5632;5633;5634;5635;5636;5637 3838;3839;3840 3840 3 DDPDGKQEAKPQQAAGMLSPK Unmodified 2210.0637 0.063745829 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 3 2 93.512 84.349 3;4 0.00010087 7 62583 20150910_Q1_SA_NiHu_Masterprac_group15_C 75.224 43.103 38535000 3614200 2795600 4750300 1715800 18704000 6954500 1255 383;1082 1236 5638;5639;5640;5641;5642;5643;5644;5645;5646;5647 3841;3842;3843;3844;3845;3846;3847 3845 7 DDPHACYSTVFDK Unmodified 1553.6457 0.64565776 294 CON__P02769 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 110.66 101.78 2 0.0022316 3 67339 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.373 49.334 26243000 3081200 6718500 1902100 2442200 1199500 10900000 + 1256 294 1237 5648;5649;5650;5651;5652;5653 3848;3849;3850 3849 3 DDPHACYSTVFDKLK Unmodified 1794.8247 0.82468476 294 CON__P02769 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 132.04 124.24 3 1.8939E-125 5 84390 20150910_Q1_SA_NiHu_Masterprac_group10_B 154.13 140.09 455690000 31462000 177570000 0 46430000 56246000 143990000 + 1257 294 1238 5654;5655;5656;5657;5658 3851;3852;3853;3854;3855 3854 5 DDPSKPVHLTAFLGYK Unmodified 1786.9254 0.92538508 905 P39023;H7C422;H7C3M2;F8WCR1 RPL3 60S ribosomal protein L3 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 133.28 132.97 3 0.0044039 2 86462 20150910_Q1_SA_NiHu_Masterprac_group13_B 51.466 38.312 65819000 0 29718000 0 36101000 0 0 1258 905 1239 5659;5660 3856;3857 3856 2 DDQLLDDGK Unmodified 1017.4615 0.46146903 179 B8ZZU8;Q15370;B7WPD3;I3L0M9 TCEB2 Transcription elongation factor B polypeptide 2 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 72.694 65.588 2 0.013763 3 51827 20150910_Q1_SA_NiHu_Masterprac_group13_C 79.148 50.19 5299600 302750 1777600 1899200 0 0 1320000 1259 179 1240 5661;5662;5663;5664 3858;3859;3860 3858 3 DDQNPHSSNICNISCDK Unmodified 2002.8109 0.81090196 283 CON__P00711 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 74.43 67.15 3 0.0013205 1 47163 20150910_Q1_SA_NiHu_Masterprac_group10_B 74.732 73.405 5593000 0 1863000 706840 754530 885500 1383000 + 1260 283 1241 5665;5666;5667;5668;5669 3861 3861 1 DDRAESQASSLGQK Unmodified 1490.6961 0.69611342 415 F5H4I8;E9PCM7;F5H2R1;P37275;Q2KJ05;F5H8J0;F5H838;Q5VZ84;G3V1R3 ZEB1 Zinc finger E-box-binding homeobox 1 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 2 1 52.175 44.613 3 0.0013178 3 36346 20150910_Q1_SA_NiHu_Masterprac_group13_C 79.875 60.676 11172000 1484000 0 2297600 1710300 2882700 2797300 1261 415 1242 5670;5671;5672;5673;5674;5675 3862;3863;3864 3862 3 DDTDPGQLKGLSAHTHVELPYYSK Unmodified 2670.2926 0.29255979 724 O43913;B4DXT8 ORC5 Origin recognition complex subunit 5 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 132.66 122.33 4 5.5914E-08 2 78604 20150910_Q1_SA_NiHu_Masterprac_group10_C 76.807 59.661 42086000 14243000 0 0 0 0 27842000 1262 724 1243 5676;5677 3865;3866 3866 0 DDVAPESGDTTVKKPESK Unmodified 1901.9218 0.92181584 753 O76021;B4DJ58 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 2 2 55.053 48.996 3;4 0.0026483 4 40338 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.188 44.708 55716000 0 7842000 9294500 9141300 20903000 8535800 1263 753 1244 5678;5679;5680;5681;5682;5683;5684;5685;5686;5687 3867;3868;3869;3870 3869 4 DEAEDLLGRGSR Unmodified 1316.6321 0.6320566 1653 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 102.67 92.877 3 0.037562 1 62516 20150910_Q1_SA_NiHu_Masterprac_group10_B 45.433 25.292 10815000 1088100 2630800 615440 0 1397900 5083000 1264 1653 1245 5688;5689;5690;5691;5692 3871 3871 1 DEATDGGGDNKEGEDSSVIHYDDK Unmodified 2552.0423 0.042277923 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 82.774 75.822 3;4 1.0823E-08 6 52523 20150910_Q1_SA_NiHu_Masterprac_group10_B 72.99 71.355 33509000 0 7765800 8553400 0 0 17190000 1265 486 1246 5693;5694;5695;5696;5697;5698 3872;3873;3874;3875;3876;3877 3877 6 DECNVVEVVAR Unmodified 1288.6082 0.60815004 747 O75607 NPM3 Nucleoplasmin-3 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 2 1 118.47 114.24 2 2.7414E-05 2 77562 20150910_Q1_SA_NiHu_Masterprac_group15_B 103.43 74.722 8212400 2547600 2104200 0 845970 0 2714600 1266 747 1247 5699;5700;5701;5702;5703 3878;3879 3878 2 DEDVEEEDEDAEGK Unmodified 1607.5958 0.59584984 1130 Q15061 WDR43 WD repeat-containing protein 43 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 55.862 50.029 2 9.1785E-07 2 40850 20150910_Q1_SA_NiHu_Masterprac_group15_C 90.759 89.265 1292300 0 434630 0 0 441220 416490 1267 1130 1248 5704;5705;5706 3880;3881 3881 1 DEEFAGSSPQSSK Unmodified 1367.5841 0.58410336 1634 Q9Y2M0-2;Q9Y2M0;H3BQ24 FAN1 Fanconi-associated nuclease 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 56.97 50.753 2 0.022544 1 41424 20150910_Q1_SA_NiHu_Masterprac_group15_C 64.224 41.647 3854600 0 610990 818240 490040 942650 992680 1268 1634 1249 5707;5708;5709;5710;5711 3882 3882 0 DEEQAALGQK Unmodified 1087.5146 0.51456723 1157 Q1ED39;H3BPL4 KNOP1 Lysine-rich nucleolar protein 1 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 57.651 46.656 2 0.012631 2 38561 20150910_Q1_SA_NiHu_Masterprac_group15_C 70.056 34.619 2581400 743930 0 1324000 0 513430 0 1269 1157 1250 5712;5713;5714 3883;3884 3883 2 DEIIKNVPLKK Unmodified 1295.7813 0.78128702 359 Q7L576;E7EQ04;E7EVJ5;Q96F07-2;E7EVF4;Q7L576-3;Q7L576-2;F5H583;Q96F07;E7EWA4;E7EW33;H7C229 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 yes no 0 0 2 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 92.253 88.743 3 0.011999 3 60147 20150910_Q1_SA_NiHu_Masterprac_group10_B 80.24 43.569 6448900 910610 1452800 0 994500 0 3091000 1270 359 1251 5715;5716;5717;5718 3885;3886;3887 3887 3 DEILPTTPISEQK Unmodified 1469.7613 0.76133944 457 E9PPU1;H0YEU2;E9PL09;P23396;E9PSF4 RPS3 40S ribosomal protein S3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.28 130.68 2 0.00059379 1 84087 20150910_Q1_SA_NiHu_Masterprac_group10_B 92.781 59.782 13670000 0 13670000 0 0 0 0 1271 457 1252 5719 3888 3888 1 DEISVDSLDFNKK Unmodified 1508.7359 0.73585297 1003 P63151;P63151-2;E5RFR9;A8MZB4;Q66LE6 PPP2R2A;PPP2R2D Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 132.01 126.7 2;3 1.2386E-23 3 87065 20150910_Q1_SA_NiHu_Masterprac_group15_B 117.27 89.215 28561000 15624000 4961600 0 2890500 0 5084700 1272 1003 1253 5720;5721;5722;5723 3889;3890;3891 3890 3 DEKFKTTVPNAESK Unmodified 1592.8046 0.80460124 1330 Q8NI27;Q8NI27-2;H7C477;H0Y7U4 THOC2 THO complex subunit 2 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 1 1 1 1 1 71.407 63.945 3 0.0095679 4 51612 20150910_Q1_SA_NiHu_Masterprac_group13_C 60.937 32.654 19559000 5416900 2153700 5137900 2563700 2438400 1848700 1273 1330 1254 5724;5725;5726;5727;5728;5729;5730 3892;3893;3894;3895 3892 4 DELCVVCGDK Unmodified 1193.5057 0.5056588 822 P10828;C9JJM3;C9JNQ4;P10828-2 THRB Thyroid hormone receptor beta yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 89.725 87.769 2 0.039779 1 60157 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.841 42.623 0 0 0 0 0 0 0 1274 822 1255 5731 3896 3896 1 DELCVVCGDKATGYHYR Unmodified 2041.8986 0.89859476 822 P10828;C9JNQ4;P10828-2 THRB Thyroid hormone receptor beta yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 113.83 103.1 4 0.0075697 2 70542 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.452 26.19 2793000 0 0 969790 0 0 1823200 1275 822 1256 5732;5733 3897;3898 3898 2 DELERVAK Unmodified 958.50836 0.50835964 927 P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 53.54 46.872 2 0.037375 1 32693 20150910_Q1_SA_NiHu_Masterprac_group13_B 88.819 18.82 2587700 0 0 0 740140 1847600 0 1276 927 1257 5734;5735 3899 3899 1 DELLGEKPEVK Unmodified 1255.666 0.66598249 563 P08651-4;P08651-5;P08651-3;P08651-2;P08651;F8W9H9 NFIC Nuclear factor 1 C-type yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 95.009 87.071 2;3 0.0012308 7 59535 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.611 72.97 36187000 3629100 6583500 4110600 2772600 3020100 16071000 1277 563 1258 5736;5737;5738;5739;5740;5741;5742;5743;5744;5745;5746;5747 3900;3901;3902;3903;3904;3905;3906 3902 7 DELLGEKPEVKQK Unmodified 1511.8195 0.81952302 563 P08651-4;P08651-5;P08651-3;P08651-2;P08651;F8W9H9 NFIC Nuclear factor 1 C-type yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 1 2 1 77.758 70.057 2;3 0 6 54188 20150910_Q1_SA_NiHu_Masterprac_group15_C 186.16 117.62 237960000 37805000 37862000 34345000 21349000 42632000 63972000 1278 563 1259 5748;5749;5750;5751;5752;5753;5754;5755;5756 3907;3908;3909;3910;3911;3912 3910 6 DELLSEKPEIK Unmodified 1299.6922 0.69219725 658 O00712-2;Q5W0Y9;O00712;H7BYE8;Q5VW27;Q5VW29;Q5VW30;Q5VW26 NFIB Nuclear factor 1 B-type;Nuclear factor 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 2 1 2 107.76 101.06 2;3 0.00054357 2 68732 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.483 66.42 5797800 441960 1486100 441890 0 0 3427900 1279 658 1260 5757;5758;5759;5760;5761;5762 3913;3914 3913 2 DELLSEKPEIKQK Unmodified 1555.8457 0.84573777 658 O00712-2;Q5W0Y9;O00712;H7BYE8;Q5VW27;Q5VW29;Q5VW30;Q5VW26 NFIB Nuclear factor 1 B-type;Nuclear factor 1 yes no 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 89.987 83.111 2;3 0.0054584 3 56560 20150910_Q1_SA_NiHu_Masterprac_group13_B 73.881 56.31 83784000 9172100 13954000 11771000 10926000 15397000 22562000 1280 658 1261 5763;5764;5765;5766;5767;5768;5769 3915;3916;3917 3915 1 DELLSEKPEVK Unmodified 1285.6765 0.67654718 1062 Q12857-2;B1AKN5;F5H0R0;Q12857;B1AKN8;F8W8W3;B1AKN6;B1AKN7 NFIA Nuclear factor 1 A-type yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 96.584 88.217 2;3 9.0519E-20 6 60398 20150910_Q1_SA_NiHu_Masterprac_group15_B 122.18 72.712 21076000 1285300 1834500 1668900 2386100 3196700 10705000 1281 1062 1262 5770;5771;5772;5773;5774;5775;5776;5777;5778;5779 3918;3919;3920;3921;3922;3923 3920 6 DELLSEKPEVKQK Unmodified 1541.8301 0.83008771 1062 Q12857-2;B1AKN5;F5H0R0;Q12857;B1AKN8;F8W8W3;B1AKN6;B1AKN7 NFIA Nuclear factor 1 A-type yes no 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 79.015 71.395 3 7.0495E-46 6 50865 20150910_Q1_SA_NiHu_Masterprac_group10_C 125.36 54.818 137450000 27826000 24427000 16192000 17529000 20836000 30637000 1282 1062 1263 5780;5781;5782;5783;5784;5785;5786 3924;3925;3926;3927;3928;3929 3929 6 DELTDLDQSNVTEETPEGEEHHPVADTENK Unmodified 3377.4655 0.46551095 1317 Q8NC51-3;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 125.37 119.48 4 2.6845E-77 4 81063 20150910_Q1_SA_NiHu_Masterprac_group13_C 108.44 103.54 35396000 0 4984800 22531000 1425700 0 6454000 1283 1317 1264 5787;5788;5789;5790 3930;3931;3932;3933 3931 4 DELTESPKYIQK Unmodified 1449.7351 0.73512469 1316 Q8NC51;Q8NC51-2 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 93.652 85.681 2;3 0.0029091 7 58196 20150910_Q1_SA_NiHu_Masterprac_group10_B 92.19 41.293 22076000 1941800 4761000 5782700 1358000 2339700 5893100 1284 1316 1265 5791;5792;5793;5794;5795;5796;5797;5798;5799;5800;5801;5802;5803 3934;3935;3936;3937;3938;3939;3940 3939 7 DEMVPRLVK Unmodified 1085.5903 0.59031513 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 106.91 101.22 2 0.019901 3 74031 20150910_Q1_SA_NiHu_Masterprac_group13_C 97.431 65.67 18901000 0 358990 3647200 5050600 0 9844100 1285 1575 1266 5804;5805;5806;5807 3941;3942;3943 3942 3 DENEGENKEEDSSVIHYDNEAIAR Unmodified 2762.1903 0.19033914 430 Q12873;E9PG89;Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 2 107.05 101.61 3;4 7.0755E-08 4 69283 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.589 47.718 19084000 0 7583300 2706100 0 0 8794900 1286 430 1267 5808;5809;5810;5811;5812 3944;3945;3946;3947 3945 4 DEPAELKPDSEDLSSQSSASK Unmodified 2219.0077 0.0077303175 1204 Q5VTR2 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 96.627 90.193 3 2.6091E-05 1 61145 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.139 44.214 10266000 0 5744200 3614000 907890 0 0 1287 1204 1268 5813;5814;5815 3948 3948 1 DEPEEELQK Unmodified 1115.4982 0.49824846 1082;383 Q13428-7;E7ETY2;Q13428-6;H0YA99;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 2 65.043 57.84 2 0.0064746 3 42867 20150910_Q1_SA_NiHu_Masterprac_group10_C 96.034 96.034 14544000 4505200 2330400 216980 0 311920 7179200 1288 383;1082 1269 5816;5817;5818;5819;5820;5821 3949;3950;3951 3951 3 DEPEEELQKGMGTVEGGDQSNPK Unmodified 2473.0915 0.091476722 1082;383 Q13428-7;E7ETY2;Q13428-6;H0YA99;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 131.37 119.95 3 4.4645E-21 3 77648 20150910_Q1_SA_NiHu_Masterprac_group10_C 93.196 67.393 20905000 10676000 4809700 5419300 0 0 0 1289 383;1082 1270 5822;5823;5824 3952;3953;3954 3954 3 DEPEEELQKGMGTVEGGDQSNPKSK Unmodified 2688.2185 0.21846815 1082;383 Q13428-7;E7ETY2;Q13428-6;H0YA99;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 2 1 1 128.38 114.5 3;4 7.7965E-29 4 76562 20150910_Q1_SA_NiHu_Masterprac_group10_C 93.388 84.541 60338000 27352000 0 18648000 5455200 8882500 0 1290 383;1082 1271 5825;5826;5827;5828;5829 3955;3956;3957;3958 3958 3 DEQPSGSVETGFEDKIPK Unmodified 1961.9218 0.92181584 1551 Q9NVV4;Q5T851 MTPAP Poly(A) RNA polymerase, mitochondrial yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 130.2 129.9 3 0.0014561 1 83101 20150910_Q1_SA_NiHu_Masterprac_group10_B 77.027 58.039 3286400 0 2832900 0 453510 0 0 1291 1551 1272 5830;5831 3959 3959 1 DEQQISAAVEK Unmodified 1216.5935 0.59354583 1239 Q6YN16-2;Q6YN16 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 79.482 72.122 2 2.8545E-13 2 50051 20150910_Q1_SA_NiHu_Masterprac_group15_B 117.79 88.249 7344200 0 1976800 1106800 532070 131280 3597200 1292 1239 1273 5832;5833;5834;5835;5836 3960;3961 3960 2 DEQTPGWTTAASDMK Unmodified 1636.7039 0.70390092 722 O43829 ZBTB14 Zinc finger and BTB domain-containing protein 14 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 122.62 120.8 2 0.0044887 4 82014 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.094 28.859 2584500 0 993830 0 516620 0 1074100 1293 722 1274 5837;5838;5839 3962;3963;3964;3965 3964 4 DERFFSDK Unmodified 1042.472 0.47197413 291 CON__P02668 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 77.977 72.763 2 0.021372 1 50465 20150910_Q1_SA_NiHu_Masterprac_group10_B 99.013 73.439 45645000 0 11551000 293110 13079000 0 20721000 + 1294 291 1275 5840;5841;5842;5843 3966 3966 1 DERFFSDKIAK Unmodified 1354.6881 0.68811492 291 CON__P02668 yes yes 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 103.82 95.387 3 4.2616E-41 5 63798 20150910_Q1_SA_NiHu_Masterprac_group10_B 131.12 90.036 72372000 15157000 4600200 13055000 15910000 10824000 12826000 + 1295 291 1276 5844;5845;5846;5847;5848;5849 3967;3968;3969;3970;3971 3970 5 DERQEDPYGPQTK Unmodified 1561.7009 0.70086445 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 54.177 49.324 3 0.0053679 3 36957 20150910_Q1_SA_NiHu_Masterprac_group10_C 60.937 38.155 12883000 2245800 1939900 0 1289600 3839800 3567500 1296 578 1277 5850;5851;5852;5853;5854 3972;3973;3974 3974 3 DERQEDPYGPQTKEVNEQTHFASMPR Unmodified 3088.3945 0.39447546 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 128.61 110.62 5 0.018034 1 79477 20150910_Q1_SA_NiHu_Masterprac_group13_C 41.853 37.454 2279400 0 0 2279400 0 0 0 1297 578 1278 5855 3975 3975 1 DESQEGKQQYLQSIEER Unmodified 2065.9552 0.95524124 861 P21912 SDHB Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 114.55 104.85 3 0.0016557 2 69245 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.635 45.583 3285200 0 2157200 1128100 0 0 0 1298 861 1279 5856;5857 3976;3977 3977 2 DESSTGSLAMSTRPR Unmodified 1593.7417 0.74168341 27 F5H101;Q76FK4-2;Q76FK4-4;A6NJK7;Q76FK4;F8WE42;Q76FK4-3;F5GWN9;F5H540 NOL8 Nucleolar protein 8 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 81.006 73.461 3 0.0006458 3 56221 20150910_Q1_SA_NiHu_Masterprac_group15_C 74.133 42.411 19576000 1668000 2648400 2276500 2680200 4934100 5369300 1299 27 1280 5858;5859;5860;5861;5862;5863 3978;3979;3980 3979 3 DETEFYLGK Unmodified 1100.5026 0.50260556 277 F8WBS5;F8WB72;C9K025;P18077 RPL35A 60S ribosomal protein L35a yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 118.47 116.13 2 0.034563 1 79045 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.463 39.319 1949800 0 0 0 551750 0 1398000 1300 277 1281 5864;5865 3981 3981 1 DETYKPHLER Unmodified 1286.6255 0.62551466 677 Q96JP5-2;H9KV86;Q96JP5;H3BTR0 ZFP91;ZFP91-CNTF E3 ubiquitin-protein ligase ZFP91 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 57.327 56.273 3 0.031059 1 39717 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.174 30.388 2286500 0 0 0 0 0 2286500 1301 677 1282 5866 3982 3982 1 DEYRQDYDAGRGGYGK Unmodified 1848.8027 0.80270376 399 E9PAR5;P52298;C9JQX9;B3KSB0;P52298-2 NCBP2 Nuclear cap-binding protein subunit 2 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 65.684 58.785 3 0.014204 1 41330 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.004 41.684 5286100 0 1333100 731280 502000 989690 1730000 1302 399 1283 5867;5868;5869;5870;5871 3983 3983 1 DEYSSSETTGEKPEQNDDDTIK Unmodified 2487.0409 0.040880939 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 76.378 69.059 3 1.0356E-05 6 47904 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.938 38.138 13245000 0 2510700 2092600 2177500 1864500 4599700 1303 1325 1284 5872;5873;5874;5875;5876 3984;3985;3986;3987;3988;3989 3985 6 DEYTFSPGKSK Unmodified 1257.5877 0.58773217 1035 Q02880-2;Q02880;B4DLV2 TOP2B DNA topoisomerase 2-beta yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 2 1 2 2 75.41 67.326 2;3 0.011412 4 52265 20150910_Q1_SA_NiHu_Masterprac_group15_C 77.062 51.936 14810000 1456500 4443600 1395500 0 2536700 4977300 1304 1035 1285 5877;5878;5879;5880;5881;5882;5883;5884 3990;3991;3992;3993 3991 4 DFDFESANAQFNK Unmodified 1531.6579 0.657937 128 B4DTG6;Q8ND56-2;Q8ND56;I3L420 LSM14A Protein LSM14 homolog A yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 133.05 132.44 2 0.037268 1 86019 20150910_Q1_SA_NiHu_Masterprac_group10_B 52.821 30.04 4989200 0 4989200 0 0 0 0 1305 128 1286 5885 3994 3994 0 DFFAQQQHLTPDK Unmodified 1573.7525 0.75250609 648 H3BSH2;Q9H6Q4-3;Q9H6Q4 NARFL Cytosolic Fe-S cluster assembly factor NARFL yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 116.46 114.18 3 0.0063503 1 78000 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.04 26.562 1881600 0 0 0 401530 0 1480100 1306 648 1287 5886;5887 3995 3995 1 DFIGDRSIPK Unmodified 1146.6033 0.60332266 1592 Q9UHB7;Q9UHB7-2;Q9UHB7-3;C9JCE0 AFF4 AF4/FMR2 family member 4 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 109.18 101.99 2 0.03691 1 67352 20150910_Q1_SA_NiHu_Masterprac_group13_B 68.626 9.9265 4897800 1356400 763610 773160 648210 0 1356400 1307 1592 1288 5888;5889;5890;5891;5892 3996 3996 1 DFIKTTVK Unmodified 950.54368 0.54368251 901 P35659;P35659-2;B4DFG0;H0Y993 DEK Protein DEK yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 82.444 74.883 2 0.038857 1 52495 20150910_Q1_SA_NiHu_Masterprac_group10_C 86.67 29.389 13660000 2304800 3287400 2023500 1256700 2623100 2164200 1308 901 1289 5893;5894;5895;5896;5897;5898 3997 3997 1 DFLDEHYDIPK Unmodified 1390.6405 0.64049603 1323 Q8NEM2 SHCBP1 SHC SH2 domain-binding protein 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.86 132.26 3 0.0051783 1 85863 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.412 46.584 5977100 0 5977100 0 0 0 0 1309 1323 1290 5899 3998 3998 1 DFLLTAR Unmodified 834.45995 0.45995289 1005 P63173 RPL38 60S ribosomal protein L38 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 131.5 120.2 2 4.0928E-44 5 78870 20150910_Q1_SA_NiHu_Masterprac_group10_C 145.04 43.716 138970000 62959000 0 18136000 6072700 22290000 29512000 1310 1005 1291 5900;5901;5902;5903;5904 3999;4000;4001;4002;4003 4003 5 DFMIQGGDFTRGDGTGGK Unmodified 1857.8316 0.83156105 867 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 131.56 131.25 3 0.00079981 1 84369 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.431 44.008 5217800 0 2801400 0 2416400 0 0 1311 867 1292 5905;5906 4004 4004 1 DFMIQGGDPTGTGRGGASIYGK Unmodified 2184.027 0.026966392 1646 Q9Y3C6 PPIL1 Peptidyl-prolyl cis-trans isomerase-like 1 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 131.69 131.69 3 0.033983 1 84706 20150910_Q1_SA_NiHu_Masterprac_group13_B 32.553 18.202 7586100 0 0 0 7586100 0 0 1312 1646 1293 5907 4005 4005 1 DFMIQGGDPTGTGRGGASIYGK Oxidation (M) 2200.0219 0.021881014 1646 Q9Y3C6 PPIL1 Peptidyl-prolyl cis-trans isomerase-like 1 yes yes 0 1 1 By matching By matching By matching By matching By matching By MS/MS 1 1 126.89 124.41 3 0.0090183 1 84556 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.267 46.004 2468200 0 0 0 302780 0 2165400 1313 1646 1293 5908;5909 4006 4006 184 1 DFPETNNILK Unmodified 1189.5979 0.59790293 129 F8W720;B4DUT7;P49915 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 132.79 127.82 2 0.026777 1 87850 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.699 25.659 13153000 0 0 0 0 0 13153000 1314 129 1294 5910 4007 4007 1 DFPLHLGK Unmodified 925.50215 0.50215205 1109 Q14676;Q14676-2;E9PGY5;Q14676-3;F8VV34;E7EVA7;Q14676-4;A2AB06;A2AB07;A2AB05;F8WCC2;E7ER07;E7ENQ0;A1Z5I7 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.77 126.8 2 0.017128 1 86607 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.241 45.212 12830000 0 0 0 0 0 12830000 1315 1109 1295 5911 4008 4008 1 DFQESSIK Unmodified 952.45018 0.45017606 535 Q96RL1;F8VQY2;Q96RL1-3;F2Z2T8 UIMC1 BRCA1-A complex subunit RAP80 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 71.533 64.205 2 0.015568 2 45252 20150910_Q1_SA_NiHu_Masterprac_group10_B 84.498 35.937 11659000 1247700 2693400 3234100 962900 857220 2664000 1316 535 1296 5912;5913;5914;5915;5916;5917 4009;4010 4010 2 DFQSCFGLHETR Unmodified 1495.6514 0.65141184 183 F5H6U2;F5GZ82;Q9NP50;B7Z287 FAM60A Protein FAM60A yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 128.81 121.73 2;3 0.0086188 2 77619 20150910_Q1_SA_NiHu_Masterprac_group10_C 60.364 23.41 8715200 3385100 1337400 0 0 0 3992700 1317 183 1297 5918;5919;5920 4011;4012 4012 2 DFRDHAEQQHIAAQQK Unmodified 1920.9191 0.91907092 1539 Q9NRY2 INIP SOSS complex subunit C yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 60.924 54.347 4 0.0024424 2 44802 20150910_Q1_SA_NiHu_Masterprac_group13_C 57.414 33.513 10338000 0 715300 2136500 2484000 2461800 2540800 1318 1539 1298 5921;5922;5923;5924;5925 4013;4014 4013 2 DFRLNSHLIQHQR Unmodified 1662.8703 0.87027024 1307 Q8N720;Q8N720-3 ZNF655 Zinc finger protein 655 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 105.31 95.91 4 0.0016087 2 69508 20150910_Q1_SA_NiHu_Masterprac_group15_C 74.962 57.845 5842300 0 0 1095700 872650 1063500 2810400 1319 1307 1299 5926;5927;5928;5929 4015;4016 4016 2 DFRQPADLAMHRR Unmodified 1611.8052 0.80522714 1401 Q96K58;C9JHH8 ZNF668 Zinc finger protein 668 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 94.844 85.946 4 0.016609 1 58832 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.448 30.81 3198300 0 0 450460 789320 1123400 835060 1320 1401 1300 5930;5931;5932;5933 4017 4017 1 DFSDITK Unmodified 824.3916 0.39159855 1534 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 91.828 77.959 1 0.030389 2 58582 20150910_Q1_SA_NiHu_Masterprac_group15_C 50.632 26.66 2387400 608620 0 409730 0 1369100 0 1321 1534 1301 5934;5935;5936 4018;4019 4018 2 DFSESRNNRFSTPEQAAK Unmodified 2082.9719 0.97189435 838 P14866;A6NIT8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 2 2 1 2 2 87.21 78.966 3;4 0.0092786 4 53919 20150910_Q1_SA_NiHu_Masterprac_group10_B 50.874 18.722 462580000 0 92298000 95278000 19445000 133940000 121620000 1322 838 1302 5937;5938;5939;5940;5941;5942;5943;5944;5945 4020;4021;4022;4023 4021 4 DFSNSPLHR Unmodified 1071.5098 0.50975662 774 O95758-1;O95758-6;O95758-2;O95758;O95758-5;O95758-4;B1ALY6 PTBP3 Polypyrimidine tract-binding protein 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 78.192 70.68 2 0.018196 1 49021 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.816 50.786 6591600 611230 707150 699640 389300 1711400 2472800 1323 774 1303 5946;5947;5948;5949;5950;5951 4024 4024 1 DFTEDTIPR Unmodified 1092.5088 0.50875357 769 O95243-2 MBD4 Methyl-CpG-binding domain protein 4 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 116.32 105.92 2 0.026416 1 72458 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.299 42.21 3925800 0 0 0 0 2064900 1860900 1324 769 1304 5952;5953 4025 4025 1 DFTEDTIPRTQIER Unmodified 1719.8428 0.84277766 769 O95243-2 MBD4 Methyl-CpG-binding domain protein 4 yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 1 1 1 125.92 118.55 2;3 0.0035893 5 77136 20150910_Q1_SA_NiHu_Masterprac_group13_B 59.198 24.934 30194000 21142000 2394400 0 3299000 0 3358200 1325 769 1305 5954;5955;5956;5957;5958 4026;4027;4028;4029;4030 4027 5 DFTKQKYPEHAIHK Unmodified 1740.8948 0.89475365 892 P33992;B1AHB1 MCM5 DNA replication licensing factor MCM5 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 1 2 2 63.392 55.972 3;4 0.011394 6 39412 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.393 48.607 26848000 0 3715100 4095900 159200 5335400 13542000 1326 892 1306 5959;5960;5961;5962;5963;5964;5965;5966;5967 4031;4032;4033;4034;4035;4036 4034 5 DFVEDDTTHG Unmodified 1134.4465 0.44654725 1625 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 72.268 64.098 2 0.011673 1 46137 20150910_Q1_SA_NiHu_Masterprac_group10_C 70.908 64.947 888380 888380 0 0 0 0 0 1327 1625 1307 5968 4037 4037 1 DFWGDDYKNHVK Unmodified 1522.6841 0.68409218 1559 Q9NX58;D6RDJ1 LYAR Cell growth-regulating nucleolar protein yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 111.18 102.28 3 0.008017 1 73025 20150910_Q1_SA_NiHu_Masterprac_group15_C 61.213 44.593 5414000 782610 753910 0 0 2530300 1347200 1328 1559 1308 5969;5970;5971;5972 4038 4038 1 DGANIVIAAK Unmodified 970.54475 0.54474515 1239 Q6YN16-2;Q6YN16 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1 97.216 87.954 2 3.5969E-05 8 59703 20150910_Q1_SA_NiHu_Masterprac_group10_B 109.83 75.027 49847000 10507000 5348800 6731100 4454200 9197500 13608000 1329 1239 1309 5973;5974;5975;5976;5977;5978;5979;5980 4039;4040;4041;4042;4043;4044;4045;4046 4044 8 DGEIYCKGCYAK Unmodified 1462.6221 0.62208554 859 P21291;E9PND2;B3KVC9;E9PP21 CSRP1 Cysteine and glycine-rich protein 1 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 68.403 62.758 3 0.015937 2 44397 20150910_Q1_SA_NiHu_Masterprac_group10_B 54.343 41.911 4387100 909670 685850 559570 1685800 0 546210 1330 859 1310 5981;5982;5983;5984;5985 4047;4048 4047 2 DGERCRDDSFFGETSHNYHK Unmodified 2456.02 0.019983534 52 P43243;A8MXP9;D6REM6;D6R991 MATR3 Matrin-3 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 85.282 76.73 4 0.0046844 1 52955 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.384 41.308 7559900 1115700 0 1166100 911500 1875200 2491400 1331 52 1311 5986;5987;5988;5989;5990 4049 4049 1 DGFGGLAAAR Unmodified 933.46683 0.46682918 1394 Q96I24 FUBP3 Far upstream element-binding protein 3 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 107.01 99.991 2 0.026776 1 68153 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.699 25.807 10358000 0 0 2032400 585660 0 7739600 1332 1394 1312 5991;5992;5993 4050 4050 1 DGFLHETLLDRR Unmodified 1470.7579 0.75792582 1106 Q14331 FRG1 Protein FRG1 yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 132.08 120.8 3 1.7181E-50 4 84361 20150910_Q1_SA_NiHu_Masterprac_group13_B 132.25 114.07 129670000 8506200 0 17802000 8055700 6566000 88738000 1333 1106 1313 5994;5995;5996;5997;5998 4051;4052;4053;4054 4051 4 DGKDPNQFTISR Unmodified 1376.6684 0.66844211 17 F8VW34;F8VX54;F8VZH2;F8VWK5;F8VUY0;F8VVS9;A6NE42;Q15583-2;Q15583-3;Q15583;F8VXG3;F8VYL4;H0YKN5;Q9GZN2 TGIF1;TGIF2 Homeobox protein TGIF1;Homeobox protein TGIF2 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 85.478 77.899 3 0.005394 3 53408 20150910_Q1_SA_NiHu_Masterprac_group13_B 64.104 39.089 22125000 607690 3275700 4946700 3516900 4125200 5652900 1334 17 1314 5999;6000;6001;6002;6003;6004 4055;4056;4057 4055 3 DGKPVSEYIIK Unmodified 1247.6762 0.67615325 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 107.46 100.62 3 0.037679 1 68563 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.28 27.252 2155600 0 0 0 219220 152730 1783700 1335 1325 1315 6005;6006;6007 4058 4058 1 DGNMVEENPYR Unmodified 1322.5561 0.55611447 1248 Q7Z2T5 TRMT1L TRMT1-like protein yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 85.074 83.418 2 0.014073 1 57131 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.429 37.199 684840 0 0 0 0 0 684840 1336 1248 1316 6008 4059 4059 1 DGNMVEENPYRQLPCNCHGSMPGK Unmodified 2789.1778 0.17782286 1248 Q7Z2T5 TRMT1L TRMT1-like protein yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 1 2 2 2 125.37 113.53 3;4 4.3391E-09 9 78500 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.122 62.76 34074000 5342000 1456200 7622700 0 4728500 14924000 1337 1248 1317 6009;6010;6011;6012;6013;6014;6015;6016;6017 4060;4061;4062;4063;4064;4065;4066;4067;4068 4063 9 DGPVRPQNAEEEK Unmodified 1467.6954 0.69538514 6 A2AAT0;E7ESG6;F5H0B5;Q92504 SLC39A7 Zinc transporter SLC39A7 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 45.515 40.126 3 0.0021661 3 28509 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.888 43.921 4996300 550010 661510 846610 545950 886520 1505700 1338 6 1318 6018;6019;6020;6021;6022;6023 4069;4070;4071 4070 3 DGSAFEDGLRHPFIVNHPK Unmodified 2135.0548 0.054836123 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 3 1 131.77 121.66 3;4 6.9508E-199 9 84133 20150910_Q1_SA_NiHu_Masterprac_group13_B 156.72 135.27 442390000 39226000 46374000 70126000 57874000 30301000 198490000 1339 352;968 1319 6024;6025;6026;6027;6028;6029;6030;6031;6032;6033;6034 4072;4073;4074;4075;4076;4077;4078;4079;4080 4073 8 DGTGHYLCNACGLYHK Unmodified 1864.7985 0.79848678 869 P23769;P23769-2;P23771;P23771-2 GATA2;GATA3 Endothelial transcription factor GATA-2;Trans-acting T-cell-specific transcription factor GATA-3 no no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 2 2 2 109.27 97.977 3;4 0.0085828 3 66747 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.925 41.421 17487000 777210 2135700 2427100 0 2079200 10068000 1340 869 1320 6035;6036;6037;6038;6039;6040;6041;6042 4081;4082;4083 4081 3 DGTGHYLCNACGLYSK Unmodified 1814.7716 0.77160333 1363 Q92908-2;Q92908 GATA6 Transcription factor GATA-6 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 2 116.86 107.33 2;3 0.0019157 5 70559 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.595 41.962 19014000 2989000 1783000 2059100 172020 4089400 7921300 1341 1363 1321 6043;6044;6045;6046;6047;6048;6049;6050 4084;4085;4086;4087;4088 4087 4 DGVGMVEYLRK Unmodified 1265.6438 0.64380726 623 H0YIB4;Q13242 SRSF9 Serine/arginine-rich splicing factor 9 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 2 127.6 124.09 2;3 0.0094968 2 83981 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.805 65.573 6525400 0 1006000 0 0 0 5519400 1342 623 1322 6051;6052;6053 4089;4090 4090 2 DGVLEEQIER Unmodified 1186.583 0.58298115 1052 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 112.98 103.9 2 0.011635 1 70924 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.942 33.433 13628000 1671100 2337100 2288600 1080200 1741400 4510000 1343 1052 1323 6054;6055;6056;6057;6058;6059 4091 4091 1 DGVMDLLTPVQTV Unmodified 1386.7065 0.7064671 1245 Q7L3T8 PARS2 Probable proline--tRNA ligase, mitochondrial yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 134.28 134.28 2 0.015101 1 87523 20150910_Q1_SA_NiHu_Masterprac_group13_B 68.463 49.264 6011800 0 0 0 6011800 0 0 1344 1245 1324 6060 4092 4092 0 DGVVEITGKHEER Unmodified 1467.7318 0.73177065 96 B4DL87;P04792 HSPB1 Heat shock protein beta-1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 73.751 58.611 3 0.0098622 1 46827 20150910_Q1_SA_NiHu_Masterprac_group15_C 55.899 34.504 1283200 0 0 0 0 1283200 0 1345 96 1325 6061 4093 4093 1 DGWLGPGPMPAVHK Oxidation (M) 1476.7184 0.71836919 1305 Q8N655 C10orf12 Uncharacterized protein C10orf12 yes yes 0 1 0 By matching By matching By matching By matching By matching By MS/MS 1 53.76 52.705 3 0.031987 1 37677 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.193 10.143 2458800 0 0 0 0 0 2458800 1346 1305 1326 6062 4094 4094 150 0 DGWLYGEHDVSK Unmodified 1404.631 0.63099397 1595 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 115.43 105.73 2 9.9487E-27 1 72319 20150910_Q1_SA_NiHu_Masterprac_group15_B 122.34 78.447 5147800 0 0 805660 852760 1882400 1607000 1347 1595 1327 6063;6064;6065;6066 4095 4095 1 DGWPAMCIHGDK Unmodified 1385.5856 0.58564046 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 1 127.38 115.34 2;3 0.001304 7 76724 20150910_Q1_SA_NiHu_Masterprac_group10_C 90.697 80.952 170010000 48569000 7666300 53826000 8223300 25098000 26626000 1348 1361;629 1328 6067;6068;6069;6070;6071;6072;6073;6074;6075 4096;4097;4098;4099;4100;4101;4102 4102 7 DGWPAMGIHGDK Unmodified 1282.5765 0.57645598 853 P17844;E7ETL9 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 3 118.63 110.98 2;3 0.0017694 7 75804 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.89 58.669 58002000 2243200 5725800 11831000 3244300 0 34958000 1349 853 1329 6076;6077;6078;6079;6080;6081;6082;6083;6084;6085;6086 4103;4104;4105;4106;4107;4108;4109 4106 7 DGYRYILAEPDPHAPDPEK Unmodified 2182.0331 0.033097627 530 F5H8F7;Q9UBL3-3;Q9UBL3;Q9UBL3-2 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 130.47 129.86 4 0.0006606 1 83318 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.998 48.396 4675600 0 4675600 0 0 0 0 1350 530 1330 6087 4110 4110 1 DHAVVVGVYRPPPK Unmodified 1532.8463 0.8463469 862 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 95.376 86.126 3 0.0018381 2 58972 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.118 47.441 2671700 0 0 0 0 1700200 971570 1351 862 1331 6088;6089 4111;4112 4111 2 DHINDIIK Unmodified 966.51345 0.51344502 929 P46940;H0YLE8 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 79.398 78.043 2 0.02554 1 53793 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.043 28.653 927610 0 0 0 0 0 927610 1352 929 1332 6090 4113 4113 1 DHIVLTVLPDQDQSDEAQEK Unmodified 2279.0917 0.091734718 1275 Q8IUF8-4;Q8IUF8;Q8IUF8-3 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.45 131.85 3 0.00091112 1 85345 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.998 37.586 0 0 0 0 0 0 0 1353 1275 1333 6091 4114 4114 1 DHLQGLDPGEPNKSK Unmodified 1633.806 0.80599822 1601 Q9UKJ3;Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 69.9 63.297 3 0.0082564 1 44406 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.899 30.883 2480300 0 740650 0 0 738520 1001100 1354 1601 1334 6092;6093;6094 4115 4115 1 DHLQGLDPGEPNKSKEVGGEK Unmodified 2233.0975 0.097488798 1601 Q9UKJ3;Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 yes no 0 0 2 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 77.86 70.349 4 0.0073894 2 48621 20150910_Q1_SA_NiHu_Masterprac_group13_B 41.615 23.381 6158900 955050 585460 1248300 1256900 1186400 926830 1355 1601 1335 6095;6096;6097;6098;6099;6100 4116;4117 4116 2 DHNIRAQEPESGLSEETQVK Unmodified 2266.0826 0.082567016 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 3 2 95.579 87.053 3;4 1.4363E-52 11 64357 20150910_Q1_SA_NiHu_Masterprac_group15_C 118.52 98.603 129370000 8867900 29525000 16930000 12580000 31314000 30151000 1356 1012 1336 6101;6102;6103;6104;6105;6106;6107;6108;6109;6110;6111;6112 4118;4119;4120;4121;4122;4123;4124;4125;4126;4127;4128 4124 11 DHQTITIQEMPEKAPAGQLPR Unmodified 2359.1954 0.1954287 873 P25205 MCM3 DNA replication licensing factor MCM3 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 130.28 129.67 3 2.2537E-09 1 83138 20150910_Q1_SA_NiHu_Masterprac_group10_B 85.737 61.232 3122400 0 3122400 0 0 0 0 1357 873 1337 6113 4129 4129 1 DHSIYIWDVKDINRVGK Unmodified 2057.0694 0.069423554 671 O43379-3;H7C3R4;O43379-2;O43379;O43379-4 WDR62 WD repeat-containing protein 62 yes no 0 0 2 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 120.26 108.88 4 0.0032937 2 76773 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.988 22.31 12825000 4818900 2295400 0 0 5710900 0 1358 671 1338 6114;6115;6116 4130;4131 4130 2 DHTLVQTIAR Unmodified 1152.6251 0.62512073 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 96.924 88.944 2 0.0027611 5 60938 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.813 75.485 39268000 172060 3985700 1962000 1609200 6582500 24957000 1359 1111 1339 6117;6118;6119;6120;6121;6122 4132;4133;4134;4135;4136 4134 5 DHTVSGDEDYCPR Unmodified 1549.6103 0.61033488 1596 Q9UIG0-2;Q9UIG0 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 63.801 55.904 2 0.016182 1 44975 20150910_Q1_SA_NiHu_Masterprac_group15_C 50.897 45.177 1209900 0 0 0 0 862550 347400 1360 1596 1340 6123;6124 4137 4137 1 DHTVSGDEDYCPRSK Unmodified 1764.7373 0.73732631 1596 Q9UIG0-2;Q9UIG0 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 50.569 45.967 3 0.00049468 3 32110 20150910_Q1_SA_NiHu_Masterprac_group13_B 83.877 68.889 2781800 696580 317740 532740 957590 0 277110 1361 1596 1341 6125;6126;6127;6128;6129 4138;4139;4140 4139 3 DIAAHIKKEFDK Unmodified 1413.7616 0.76161421 1004 P63167 DYNLL1 Dynein light chain 1, cytoplasmic yes yes 0 0 2 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 107.17 98.613 2;3 4.3493E-139 4 67161 20150910_Q1_SA_NiHu_Masterprac_group15_B 160.86 115.2 20416000 0 1284800 3704800 0 1632200 13794000 1362 1004 1342 6130;6131;6132;6133;6134 4141;4142;4143;4144 4143 4 DIAFLEAQIYEYVEILGEQR Unmodified 2398.2056 0.20564226 387 E7EUT8;Q12874 SF3A3 Splicing factor 3A subunit 3 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 134.55 134.25 3 0.00013856 1 87816 20150910_Q1_SA_NiHu_Masterprac_group13_B 78.554 68.778 39453000 0 27149000 0 12304000 0 0 1363 387 1343 6135;6136 4145 4145 1 DIDIHEVR Unmodified 995.50361 0.50360861 1022;1023 Q00839;B3KX72;Q5RI18;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 85.381 78.002 2 0.016902 2 58765 20150910_Q1_SA_NiHu_Masterprac_group15_C 82.426 52.659 12790000 0 2100000 2169500 919810 3345200 4255800 1364 1022;1023 1344 6137;6138;6139;6140;6141 4146;4147 4147 2 DIELHLESSSHQETLDHIQK Unmodified 2358.1452 0.14516727 1177 Q5BKZ1;Q5BKZ1-3 ZNF326 DBIRD complex subunit ZNF326 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 129.36 124.4 4 0.00016702 1 84128 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.894 52.394 4864500 0 0 0 0 0 4864500 1365 1177 1345 6142 4148 4148 1 DIENYIQDGK Unmodified 1193.5564 0.55643205 1362 Q92878-2;Q92878;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 113.83 110.75 2 0.021394 1 75760 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.466 37.34 3365300 0 1366000 0 0 0 1999400 1366 1362 1346 6143;6144 4149 4149 1 DIENYIQDGKDDYK Unmodified 1714.7686 0.76860967 1362 Q92878-2;Q92878;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 126.66 118.35 2;3 8.7899E-06 4 81734 20150910_Q1_SA_NiHu_Masterprac_group13_C 94.688 70.86 20360000 0 2264700 13478000 1565000 0 3052700 1367 1362 1347 6145;6146;6147;6148;6149 4150;4151;4152;4153 4151 4 DIIGLAETGSGK Unmodified 1159.6085 0.60846762 1481 Q9H0S4;G5E955 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 130.99 126.03 2 0.029705 1 85896 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.118 27.245 19945000 0 0 0 0 0 19945000 1368 1481 1348 6150 4154 4154 0 DIIHDPGRGAPLAK Unmodified 1458.7943 0.79431133 456 E9PKZ0;P62917;G3V1A1;E9PKU4 RPL8 60S ribosomal protein L8 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 99.387 89.796 3 0.0011289 2 66059 20150910_Q1_SA_NiHu_Masterprac_group15_C 72.29 52.649 2816500 618500 0 0 0 894020 1304000 1369 456 1349 6151;6152;6153 4155;4156 4156 2 DIIHYDPTK Unmodified 1100.5502 0.55022446 27 F5H101;Q76FK4-2;Q76FK4-4;A6NJK7;Q76FK4;F8WE42;Q76FK4-3 NOL8 Nucleolar protein 8 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 96.376 91.562 2 0.0087494 1 61829 20150910_Q1_SA_NiHu_Masterprac_group10_B 86.882 46.823 2792000 134590 1134100 0 0 0 1523300 1370 27 1350 6154;6155;6156 4157 4157 1 DIISDTSGDFRK Unmodified 1352.6572 0.65720872 626 H0YKS4;H0YMD0;H0YMU9;H0YN42;P07355;A6NMY6;P07355-2;H0YNP5;H0YM50;H0YN52;H0YNA0;H0YN28;H0YL33;B3KRQ1 ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 1 1 2 115.86 108.2 2;3 1.1027E-26 5 78072 20150910_Q1_SA_NiHu_Masterprac_group13_C 119.34 96.308 16744000 706260 7036600 1936400 989530 1258500 4816900 1371 626 1351 6157;6158;6159;6160;6161;6162;6163;6164 4158;4159;4160;4161;4162 4158 5 DIKAFMGTPVQK Unmodified 1333.7064 0.70640752 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 131.73 116.04 3 1.7497E-38 1 77351 20150910_Q1_SA_NiHu_Masterprac_group10_C 130.69 94.007 14271000 14271000 0 0 0 0 0 1372 919;920 1352 6165 4163 4163 1 DIKPIIKDEK Unmodified 1197.6969 0.69688869 1097 Q14151;A8MXT5;C9JPX0;F5GXS4 SAFB2 Scaffold attachment factor B2 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 62.459 61.071 3 0.014708 2 42808 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.568 10.376 1959700 0 643960 0 490040 0 825680 1373 1097 1353 6166;6167;6168;6169 4164;4165 4164 2 DILETHLR Unmodified 995.53999 0.53999412 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 106.7 96.645 2 0.0064467 2 69894 20150910_Q1_SA_NiHu_Masterprac_group15_C 95.909 60.291 16418000 0 0 0 0 4630400 11788000 1374 1012 1354 6170;6171 4166;4167 4167 2 DILETHLREK Unmodified 1252.6776 0.67755023 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 90.685 82.793 3 0.0098335 6 56848 20150910_Q1_SA_NiHu_Masterprac_group10_C 75.387 45.62 107560000 9497100 12672000 10794000 11450000 25931000 37211000 1375 1012 1355 6172;6173;6174;6175;6176;6177;6178 4168;4169;4170;4171;4172;4173 4173 6 DINSVAIAPNDK Unmodified 1255.6408 0.64083038 1058 Q12788 TBL3 Transducin beta-like protein 3 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 102.3 93.982 2 3.5413E-18 4 69715 20150910_Q1_SA_NiHu_Masterprac_group13_C 115.37 77.135 28236000 2462000 5169000 5404900 2323600 3265400 9610600 1376 1058 1356 6179;6180;6181;6182;6183;6184 4174;4175;4176;4177 4175 3 DINTFLGTPVQK Unmodified 1331.7085 0.70851601 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 135.89 119.12 2 6.3071E-12 2 83159 20150910_Q1_SA_NiHu_Masterprac_group10_C 108.68 54.426 80187000 11603000 0 0 0 68585000 0 1377 919;920 1357 6185;6186 4178;4179 4179 2 DINTFVGTPVEK Unmodified 1318.6769 0.67688153 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 132.43 121.74 2 0 4 83820 20150910_Q1_SA_NiHu_Masterprac_group13_B 206.1 148.31 888330000 182740000 143460000 144800000 67506000 117510000 232300000 1378 919;920 1358 6187;6188;6189;6190;6191;6192;6193 4180;4181;4182;4183 4180 3 DIPVTAQPSK Unmodified 1054.5659 0.56587452 1063 Q12888;Q12888-2;A6NNK5;F8VY86;C9JXV0 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 76.07 67.8 2 0.040444 1 48453 20150910_Q1_SA_NiHu_Masterprac_group10_C 53.237 27.192 1115300 1115300 0 0 0 0 0 1379 1063 1359 6194 4184 4184 1 DIRPECREDFVLSITGK Unmodified 2034.0204 0.020424451 563 P08651-4;P08651-5;P08651-3;P08651-2;P08651;F8W9H9 NFIC Nuclear factor 1 C-type yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 2 133.34 133.34 3;4 0.0057094 2 86457 20150910_Q1_SA_NiHu_Masterprac_group13_B 57.148 40.401 182110000 0 0 0 182110000 0 0 1380 563 1360 6195;6196 4185;4186 4185 2 DISAPKPGPLK Unmodified 1121.6445 0.64445919 1093 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 91.33 83.618 2 0.0053791 3 62233 20150910_Q1_SA_NiHu_Masterprac_group15_C 89.171 48.675 15603000 1422800 2211800 1967400 2032600 3957800 4010800 1381 1093 1361 6197;6198;6199;6200;6201;6202 4187;4188;4189 4189 3 DISAPNDGTAQR Unmodified 1243.5793 0.57929275 357 G3V2F4;E7EPD8;Q9NUW8;G3V2J6;G3V2U6;Q9BRS7;G3V4W8;G3V5H9;G3V3Q0;G3V5F9;G3V5B8;G3V554 TDP1 Tyrosyl-DNA phosphodiesterase 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 58.076 51.778 2 0.0040297 2 36961 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.267 36.128 2229500 0 294510 552830 264670 327180 790300 1382 357 1362 6203;6204;6205;6206;6207 4190;4191 4190 2 DISLSDYKGK Unmodified 1124.5714 0.57135383 1044 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 92.637 83.362 2 0.020458 2 61744 20150910_Q1_SA_NiHu_Masterprac_group15_C 83.862 65.237 21203000 2793800 11644000 0 0 6765300 0 1383 1044 1363 6208;6209;6210 4192;4193 4192 2 DISSSLNSLADSNAR Unmodified 1548.738 0.73797824 754 O94776 MTA2 Metastasis-associated protein MTA2 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.68 132.08 3 0.00030273 1 85611 20150910_Q1_SA_NiHu_Masterprac_group10_B 85.28 41.6 33467000 0 33467000 0 0 0 0 1384 754 1364 6211 4194 4194 1 DISTEMIR Unmodified 963.46953 0.46953129 42 A8MTM6;Q15398;G3V4E5;G3V543 DLGAP5 Disks large-associated protein 5 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 112.77 102.09 2 0.024023 1 74492 20150910_Q1_SA_NiHu_Masterprac_group13_C 76.478 30.505 9379100 874790 1776600 3264000 0 2507500 956160 1385 42 1365 6212;6213;6214;6215;6216 4195 4195 1 DIVENICGR Unmodified 1074.5128 0.51279309 913 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 1 108.95 98.946 2 0.012845 5 72378 20150910_Q1_SA_NiHu_Masterprac_group13_C 80.755 58.114 109240000 4490900 26967000 16130000 6226500 2872200 52552000 1386 913 1366 6217;6218;6219;6220;6221;6222;6223 4196;4197;4198;4199;4200 4197 5 DIVENICGREK Unmodified 1331.6503 0.65034921 913 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 3 2 98.59 89.425 2;3 1.2386E-178 8 65799 20150910_Q1_SA_NiHu_Masterprac_group15_C 178.53 96.035 235800000 6938800 24148000 65704000 36663000 26152000 76194000 1387 913 1367 6224;6225;6226;6227;6228;6229;6230;6231;6232;6233;6234 4201;4202;4203;4204;4205;4206;4207;4208 4206 8 DKALQHMAAMSSAQIVSATAIHNK Unmodified 2522.2734 0.27336145 12 A4FUP2;H0YEJ9;P28347;H0YE88;E9PKB7 TEAD1 Transcriptional enhancer factor TEF-1 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 132.49 121.26 4 1.3076E-84 4 85185 20150910_Q1_SA_NiHu_Masterprac_group13_B 120.33 101 86217000 22355000 0 45652000 18211000 0 0 1388 12 1368 6235;6236;6237 4209;4210;4211;4212 4209 4 DKDAYSSFGSR Unmodified 1231.5469 0.54692999 693 O00571;O00571-2;B4DLU5;B4E3C4;B4DXX7;O15523;B4DLA0;C9J081;B4E132;C9J8G5 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 2 2 67.438 60.278 2;3 0.019478 2 42396 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.414 39.64 3869400 0 346850 0 0 1244600 2277900 1389 693 1369 6238;6239;6240;6241;6242 4213;4214 4213 2 DKGFGFIR Unmodified 938.4974 0.49740102 1133 Q15233;F5GYZ3;C9JYS8;H7C367;C9IZL7 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 2 123.13 108.14 2 0.020725 2 71913 20150910_Q1_SA_NiHu_Masterprac_group10_C 98.582 44.377 17347000 17347000 0 0 0 0 0 1390 1133 1370 6243;6244 4215;4216 4215 2 DKPITFTQHQMPLFRK Unmodified 1986.0509 0.050936719 115 B4DQ42;Q9HC62;E7ENF4 SENP2 Sentrin-specific protease 2 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 130.45 130.45 4 0.0017424 1 83458 20150910_Q1_SA_NiHu_Masterprac_group13_B 59.709 44.886 2944600 0 0 0 2944600 0 0 1391 115 1371 6245 4217 4217 1 DKPVPLPAPEMTVK Unmodified 1520.8273 0.82725094 171 H7C128;H7C179;Q9H0E9-4;B5MCW3;H7C127;Q9H0E9-2;Q9H0E9;F8W820;H0YAH7;Q9H0E9-3;H0Y2L9 BRD8 Bromodomain-containing protein 8 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 130.92 128.14 3 0.0044399 2 86250 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.788 36.392 9139700 0 2584400 0 0 0 6555300 1392 171 1372 6246;6247 4218;4219 4218 2 DKPVTGEQIEVFANK Unmodified 1673.8625 0.86245047 1386 Q96FV9 THOC1 THO complex subunit 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 122.69 120 3 7.3651E-05 1 77134 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.02 75.02 3391100 0 1150000 0 0 0 2241100 1393 1386 1373 6248;6249 4220 4220 0 DKQPNAQPQYLHGSK Unmodified 1709.8485 0.84853174 359 Q7L576;E7EQ04;Q7L576-3;Q7L576-2 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 55.935 48.415 3 0.016598 2 34335 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.252 28.612 1849900 0 273390 162970 0 470450 943110 1394 359 1374 6250;6251;6252;6253 4221;4222 4221 2 DKSTTPGGTGIKPFLER Unmodified 1802.9527 0.95266246 1533 Q9NQW6;Q9NQW6-2 ANLN Actin-binding protein anillin yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 119.24 111.27 3;4 0.0013906 2 72767 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.15 43.16 11852000 254910 1860600 3641400 2477400 0 3618100 1395 1533 1375 6254;6255;6256;6257;6258 4223;4224 4224 2 DKVNCSFYFK Unmodified 1306.6016 0.6016081 1024 Q01081-3;Q8WU68-3;Q8WU68-2;Q8WU68;Q01081-2;Q01081 U2AF1;U2AF1L4 Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 114.6 105.5 2 0.021831 3 76597 20150910_Q1_SA_NiHu_Masterprac_group13_C 83.226 52.429 17853000 2050900 4250500 1971900 1182800 2380300 6016700 1396 1024 1376 6259;6260;6261;6262;6263;6264 4225;4226;4227 4226 3 DKVQAGDVITIDKATGK Unmodified 1757.9523 0.95232811 1627 Q9Y230;B3KQ59 RUVBL2 RuvB-like 2 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 102.67 95.421 3 0.0014067 1 65312 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.942 33.273 3053800 0 893180 0 0 744740 1415900 1397 1627 1377 6265;6266;6267 4228 4228 0 DLAGSIIGK Unmodified 872.49673 0.49673232 984 P61978-3;P61978-2;B4DFF1;P61978;Q5T6W5 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 128.26 114.76 1;2 0.007188 2 80144 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.248 4.4613 10577000 0 0 5035800 0 2343900 3197500 1398 984 1378 6268;6269;6270 4229;4230 4230 2 DLAGSIIGKGGQR Unmodified 1270.6993 0.69934831 984 P61978-3;P61978-2;B4DFF1;P61978;Q5T6W5 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 3 2 3 111.68 103.28 2;3 2.2346E-74 9 69092 20150910_Q1_SA_NiHu_Masterprac_group10_C 142.12 94.145 97200000 8198800 20526000 10516000 6267100 10210000 41483000 1399 984 1379 6271;6272;6273;6274;6275;6276;6277;6278;6279;6280;6281;6282;6283;6284;6285 4231;4232;4233;4234;4235;4236;4237;4238;4239 4239 9 DLAGSIIGKGGQRIK Unmodified 1511.8784 0.87837531 984 P61978-3;P61978-2;B4DFF1;P61978;Q5T6W5 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 118.23 110.3 3 5.8361E-08 4 79454 20150910_Q1_SA_NiHu_Masterprac_group13_C 97.463 71.921 45084000 6952000 10465000 9489100 3544700 0 14633000 1400 984 1380 6286;6287;6288;6289;6290 4240;4241;4242;4243 4240 4 DLANLEVPHELPTK Unmodified 1574.8304 0.83042206 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.83 132.23 2 0.0082926 1 85816 20150910_Q1_SA_NiHu_Masterprac_group10_B 52.372 26.26 21199000 0 21199000 0 0 0 0 1401 1344 1381 6291 4244 4244 1 DLANLEVPHELPTKQDGSGVK Unmodified 2246.1543 0.1542754 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 131.04 130.74 4 6.759E-06 1 84437 20150910_Q1_SA_NiHu_Masterprac_group10_B 76.118 66.636 15925000 0 14266000 0 1658400 0 0 1402 1344 1382 6292;6293 4245 4245 1 DLANLEVPHELPTKQDGSGVKGYEEK Unmodified 2852.4192 0.41921687 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 131.52 123.67 4 2.8804E-13 4 86482 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.408 51.65 270390000 0 9978700 35454000 0 0 224960000 1403 1344 1383 6294;6295;6296 4246;4247;4248;4249 4247 4 DLATVAFCDAQSTQEIHEK Unmodified 2161.995 0.99499756 973 P56545;Q5SQP8;P56545-2 CTBP2 C-terminal-binding protein 2 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 133.3 133.3 3 7.8075E-07 1 86361 20150910_Q1_SA_NiHu_Masterprac_group13_B 88.486 71.199 16510000 0 0 0 16510000 0 0 1404 973 1384 6297 4250 4250 1 DLCNTHLMR Unmodified 1158.5274 0.5273973 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 87.687 78.838 2 0.016616 1 54362 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.928 59.891 3475600 0 0 0 0 1603900 1871700 1405 1012 1385 6298;6299 4251 4251 1 DLDELSRYPEDK Unmodified 1478.6889 0.68890278 52 P43243;A8MXP9;D6REM6;D6R991 MATR3 Matrin-3 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 114.17 105.04 2;3 2.3556E-79 9 74484 20150910_Q1_SA_NiHu_Masterprac_group15_C 147.26 121.28 33370000 4263600 8224100 3262500 2066600 6344600 9208400 1406 52 1386 6300;6301;6302;6303;6304;6305;6306;6307;6308;6309;6310;6311 4252;4253;4254;4255;4256;4257;4258;4259;4260 4256 8 DLDFAQQK Unmodified 963.46616 0.46616048 1284 Q8IX01-4;Q8IX01-3;Q8IX01;E7ETX7 SUGP2 SURP and G-patch domain-containing protein 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 93.886 82.256 2 0.014957 1 56664 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.794 56.107 2647000 0 0 255740 0 808190 1583100 1407 1284 1387 6312;6313;6314 4261 4261 1 DLDNAGELGR Unmodified 1058.4993 0.49925152 218 B9ZVN9;O95602 POLR1A DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 85.529 76.78 2 0.008629 1 52994 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.737 52.965 3013100 0 0 0 0 1124200 1888900 1408 218 1388 6315;6316 4262 4262 1 DLDPNNVIIEQEER Unmodified 1682.8111 0.81114318 141 Q9NP64-2;B4DY38;Q9NP64;E7EPF0 ZCCHC17 Nucleolar protein of 40 kDa yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.32 131.72 2 0.0050999 1 85247 20150910_Q1_SA_NiHu_Masterprac_group10_B 56.527 34.207 5899100 0 5899100 0 0 0 0 1409 141 1389 6317 4263 4263 1 DLEAFNPESK Unmodified 1148.535 0.53496832 1237 Q6W2J9;Q6W2J9-4;Q6W2J9-2;A6NE70 BCOR BCL-6 corepressor yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 111.43 108.8 2 0.0086058 1 71663 20150910_Q1_SA_NiHu_Masterprac_group10_B 81.017 56.927 1222400 0 831250 0 0 0 391150 1410 1237 1390 6318;6319 4264 4264 1 DLEIERLK Unmodified 1014.571 0.5709599 1115 Q14807;B7Z265;H3BRB3 KIF22 Kinesin-like protein KIF22 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 109.51 102.34 2 3.3387E-24 3 69731 20150910_Q1_SA_NiHu_Masterprac_group15_B 131.22 29.895 15504000 758250 2672000 3241700 2046400 0 6786100 1411 1115 1391 6320;6321;6322;6323;6324 4265;4266;4267 4266 3 DLEIERLKTK Unmodified 1243.7136 0.71360139 1115 Q14807;B7Z265;H3BRB3 KIF22 Kinesin-like protein KIF22 yes no 0 0 2 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 97.002 88.99 3 0.027074 2 67130 20150910_Q1_SA_NiHu_Masterprac_group13_C 80.231 24.77 17776000 998450 3781700 5166300 1686100 1707000 4436600 1412 1115 1392 6325;6326;6327;6328;6329;6330 4268;4269 4269 2 DLEPGPSGTSK Unmodified 1086.5193 0.51931826 1360 Q92797;Q92797-3;Q92797-2 SYMPK Symplekin yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 48.558 45.948 2 0.020141 1 33002 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.721 13.845 366650 0 366650 0 0 0 0 1413 1360 1393 6331 4270 4270 1 DLERHVLVHTGEKPFPCLECGK Unmodified 2620.289 0.28901151 1419 Q96SL8 FIZ1 Flt3-interacting zinc finger protein 1 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 130.31 125.35 4 2.3912E-06 1 85077 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.668 45.82 24821000 0 0 0 0 0 24821000 1414 1419 1394 6332 4271 4271 1 DLFVPRPVLR Unmodified 1210.7186 0.71862719 588 G3V529;Q9GZR7;F5H4J5 DDX24 ATP-dependent RNA helicase DDX24 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 133.38 115.53 3 0.0093275 1 82458 20150910_Q1_SA_NiHu_Masterprac_group15_C 76.679 53.306 16048000 0 0 0 0 16048000 0 1415 588 1395 6333 4272 4272 1 DLGEEHFK Unmodified 973.45051 0.45051041 294 CON__P02769 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 66.199 60.675 2 5.774E-05 5 48629 20150910_Q1_SA_NiHu_Masterprac_group13_C 115.49 79.876 136220000 23605000 36410000 21828000 6245900 0 48127000 + 1416 294 1396 6334;6335;6336;6337;6338 4273;4274;4275;4276;4277 4274 5 DLGEELEALKTELEDTLDSTAAQQELR Unmodified 3016.4724 0.47243423 900 P35579 MYH9 Myosin-9 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 134.3 118.61 3 8.811E-10 1 80273 20150910_Q1_SA_NiHu_Masterprac_group10_C 56.234 43.419 0 0 0 0 0 0 0 1417 900 1397 6339 4278 4278 1 DLGLDPGKQIK Unmodified 1182.6608 0.66083754 162 B4E2Z2;P43246;E9PHA6;E7EU21;B4DL39;B4DSB9 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 106.89 98.428 2 3.5349E-29 1 67003 20150910_Q1_SA_NiHu_Masterprac_group15_B 126.03 80.261 7046800 498850 0 745490 202370 0 5600100 1418 162 1398 6340;6341;6342;6343 4279 4279 1 DLIAQARTGTGK Unmodified 1229.6728 0.67279921 1534;515 Q9NR30;Q9NR30-2;F5H3H6;Q9BQ39 DDX21;DDX50 Nucleolar RNA helicase 2;ATP-dependent RNA helicase DDX50 no no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching 2 2 2 2 2 83.199 74.417 2;3 0.011541 4 56695 20150910_Q1_SA_NiHu_Masterprac_group15_C 57.885 31.179 11229000 2665800 1965700 2063500 2662200 1871500 0 1419 1534;515 1399 6344;6345;6346;6347;6348;6349;6350;6351;6352;6353 4280;4281;4282;4283 4282 4 DLIRTAVGQTR Unmodified 1228.6888 0.68878362 42 A8MTM6;Q15398;Q15398-1 DLGAP5 Disks large-associated protein 5 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 100 94.536 3 0.0099066 1 64716 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.232 27.515 5650100 0 514030 377890 3798700 0 959510 1420 42 1400 6354;6355;6356;6357 4284 4284 1 DLKEIQHHLK Unmodified 1259.6986 0.69862003 1435 Q99961;E7EVZ4 SH3GL1 Endophilin-A2 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 71.01 63.851 3 0.024104 1 51595 20150910_Q1_SA_NiHu_Masterprac_group13_C 60.598 31.641 3063400 0 502810 801850 263730 666110 828880 1421 1435 1401 6358;6359;6360;6361;6362 4285 4285 1 DLLMNDRSTGEK Unmodified 1377.6558 0.65582851 1159 Q29RF7;H0Y9L6 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 78.438 72.613 2 0.018363 3 50502 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.088 35.556 7424300 791060 1341400 1880800 956460 0 2454600 1422 1159 1402 6363;6364;6365;6366;6367 4286;4287;4288 4286 3 DLLRHDPDLHMHQGYDK Unmodified 2088.98 0.97995662 1219 Q69YH5;E9PEI0 CDCA2 Cell division cycle-associated protein 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 104.21 92.012 4 0.0014858 1 62839 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.338 74.338 4248300 0 0 1957700 0 298030 1992500 1423 1219 1403 6368;6369;6370 4289 4289 1 DLLRLSYGEAK Unmodified 1263.6823 0.68230126 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 131.61 121.7 2;3 3.6703E-177 12 81144 20150910_Q1_SA_NiHu_Masterprac_group15_C 175.48 117.95 488100000 116000000 45079000 75964000 49669000 133630000 67753000 1424 352;968 1404 6371;6372;6373;6374;6375;6376;6377;6378;6379;6380;6381;6382 4290;4291;4292;4293;4294;4295;4296;4297;4298;4299;4300;4301 4296 12 DLLRLSYGEAKK Unmodified 1391.7773 0.77726428 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 117.85 108.62 3 0.0045192 3 74344 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.093 65.393 49150000 5532300 3253100 6105500 2716700 8917600 22624000 1425 352;968 1405 6383;6384;6385;6386;6387;6388 4302;4303;4304 4303 3 DLMACAQTGSGK Unmodified 1237.5431 0.54310694 693 O00571;O00571-2;B4DLU5;B4DXX7;O15523;C9J081;D6RCM4;E9PCD8;Q9NQI0-2;D6RDK4;Q9NQI0;H0Y960 DDX3X;DDX3Y;DDX4 ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX4 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 79.606 71.502 2 0.0038962 3 49635 20150910_Q1_SA_NiHu_Masterprac_group13_B 67.118 27.494 5082300 1598300 0 0 1379100 2104900 0 1426 693 1406 6389;6390;6391 4305;4306;4307 4305 3 DLPAGRHSHAVSTAAMTR Unmodified 1876.9326 0.9326125 18 A6NEM2;P51610-2;P51610 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 2 2 2 2 69.053 61.954 3;4 0.00181 5 43096 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.121 40.928 19301000 0 3401100 4000300 1534100 3454000 6911900 1427 18 1407 6392;6393;6394;6395;6396;6397;6398;6399;6400;6401 4308;4309;4310;4311;4312 4309 5 DLPEHAVLK Unmodified 1020.5604 0.56039521 1022;1023 Q00839;B3KX72;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 90.795 82.042 2 0.0077976 3 62817 20150910_Q1_SA_NiHu_Masterprac_group13_C 88.177 33.566 67813000 4928000 0 10590000 6694600 17682000 27919000 1428 1022;1023 1408 6402;6403;6404;6405;6406 4313;4314;4315 4313 3 DLPEHAVLKMK Unmodified 1279.6958 0.69584284 1022;1023 Q00839;B3KX72;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 1 1 104.51 95.661 3 0.0046665 3 63991 20150910_Q1_SA_NiHu_Masterprac_group10_B 76.228 55.941 17602000 2194900 2768600 2490900 2179600 2165600 5802400 1429 1022;1023 1409 6407;6408;6409;6410;6411;6412;6413 4316;4317;4318 4317 3 DLPNGDIDEYEK Unmodified 1406.6202 0.62015451 515 F5H3H6;Q9BQ39 DDX50 ATP-dependent RNA helicase DDX50 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 118.85 109.05 2 0.0018202 2 76985 20150910_Q1_SA_NiHu_Masterprac_group15_C 82.069 70.97 7173000 0 0 2068600 1163500 2124800 1816100 1430 515 1410 6414;6415;6416;6417 4319;4320 4320 2 DLQDELAGNSEQRK Unmodified 1601.7645 0.76452734 1625 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 95.197 87.552 3 0.00061011 1 59874 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.734 68.262 8299800 570390 2286600 0 0 1721600 3721200 1431 1625 1411 6418;6419;6420;6421 4321 4321 1 DLQNFLK Unmodified 876.47052 0.47051757 800 P06702 S100A9 Protein S100-A9 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.78 132.18 2 0.0078714 1 85777 20150910_Q1_SA_NiHu_Masterprac_group10_B 97.473 28.988 6081500 0 6081500 0 0 0 0 1432 800 1412 6422 4322 4322 1 DLQQQLVDAK Unmodified 1156.6088 0.60880197 907 P40222 TXLNA Alpha-taxilin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 114.62 105.49 2 2.9529E-35 5 71967 20150910_Q1_SA_NiHu_Masterprac_group15_B 135.8 94.091 22393000 1663700 2254500 1776000 1003400 7363000 8332200 1433 907 1413 6423;6424;6425;6426;6427;6428 4323;4324;4325;4326;4327 4324 5 DLRGHVELSEAR Unmodified 1380.711 0.71097563 1390 Q96H79;Q96H79-2 ZC3HAV1L Zinc finger CCCH-type antiviral protein 1-like yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 83.191 75.596 3 3.2975E-37 5 57436 20150910_Q1_SA_NiHu_Masterprac_group15_C 126.12 90.524 67850000 4691300 7581200 8053700 6034800 11246000 30244000 1434 1390 1414 6429;6430;6431;6432;6433;6434 4328;4329;4330;4331;4332 4330 5 DLSEVSETTESTDVK Unmodified 1638.7472 0.74720552 29 A6NM98;P41227 NAA10 N-alpha-acetyltransferase 10 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 99.182 96.949 2 8.9416E-83 4 71407 20150910_Q1_SA_NiHu_Masterprac_group13_C 131.86 83.292 10005000 0 3470500 0 0 0 6534300 1435 29 1415 6435;6436;6437 4333;4334;4335;4336 4333 4 DLSLENGAHAYNR Unmodified 1458.6852 0.68515481 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 99.468 89.892 3 0.0011643 2 61574 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.739 41.771 4063200 0 1212600 889310 0 540590 1420700 1436 487 1416 6438;6439;6440;6441 4337;4338 4337 2 DLTERGLWHEEMK Unmodified 1642.7773 0.77734063 870 P23921;H0YFI0;E9PD78;E9PL69;F5H861 RRM1 Ribonucleoside-diphosphate reductase large subunit;Ribonucleoside-diphosphate reductase yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 119.65 116.91 3 0.0045635 1 79764 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.088 45.865 2647700 0 362490 0 0 0 2285200 1437 870 1417 6442;6443 4339 4339 1 DLTIPESSTVK Unmodified 1188.6238 0.62378333 1168 Q49A26-2;Q49A26;Q49A26-3;Q49A26-4 GLYR1 Putative oxidoreductase GLYR1 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 119.61 108.69 2 0.0018545 3 74221 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.05 57.832 71578000 11508000 0 10018000 4867900 16982000 28203000 1438 1168 1418 6444;6445;6446;6447;6448 4340;4341;4342 4341 3 DLTTAGAVTQCYR Unmodified 1454.6824 0.68237762 104 B4DM74;Q02543 RPL18A 60S ribosomal protein L18a yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 107.86 104.3 2 0.032828 1 71309 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.171 40.499 0 0 0 0 0 0 0 1439 104 1419 6449 4343 4343 1 DLTYSCRDNK Unmodified 1270.5612 0.56119985 533 F8VZR5;F8VNP5;P28702;Q5STQ1;E9PK95;B7Z3E4 RXRB Retinoic acid receptor RXR-beta yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 53.169 41.49 2 0.008383 1 33887 20150910_Q1_SA_NiHu_Masterprac_group13_C 90.149 77.716 371690 0 0 371690 0 0 0 1440 533 1420 6450 4344 4344 1 DLTYSCRDNKDCTVDK Unmodified 1988.8568 0.85678952 533 F8VZR5;F8VNP5;P28702;Q5STQ1;E9PK95;B7Z3E4 RXRB Retinoic acid receptor RXR-beta yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1 66.199 57.963 3 1.8497E-06 3 42709 20150910_Q1_SA_NiHu_Masterprac_group10_C 91.712 91.712 75343000 8714400 11245000 19073000 10147000 11033000 15131000 1441 533 1421 6451;6452;6453;6454;6455;6456;6457 4345;4346;4347 4347 3 DLVAQAPLKPK Unmodified 1178.7023 0.70230842 754 O94776;Q68DB1 MTA2;DKFZp686F2281 Metastasis-associated protein MTA2 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 100.57 93.38 2 0.0031291 4 63701 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.611 65.13 12305000 0 2884200 1361300 0 0 8059200 1442 754 1422 6458;6459;6460 4348;4349;4350;4351 4349 4 DLVAQAPLKPKTPR Unmodified 1532.9039 0.90386178 754 O94776;Q68DB1 MTA2;DKFZp686F2281 Metastasis-associated protein MTA2 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 100.07 92.407 3 0.01157 1 68993 20150910_Q1_SA_NiHu_Masterprac_group13_C 58.885 44.944 61534000 0 312100 17562000 449980 1078900 42131000 1443 754 1423 6461;6462;6463;6464;6465 4352 4352 1 DLVVLLFETALLSSGFSLEDPQTHSNR Unmodified 2987.524 0.52401629 805 P08238 HSP90AB1 Heat shock protein HSP 90-beta yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 134.53 116.53 3 2.6253E-06 1 85752 20150910_Q1_SA_NiHu_Masterprac_group13_C 58.802 41.433 6403100 0 0 6403100 0 0 0 1444 805 1424 6466 4353 4353 1 DLYTTGRRESVNLGK Unmodified 1707.8904 0.89039656 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 97.827 91.393 3 0.014195 1 68475 20150910_Q1_SA_NiHu_Masterprac_group13_C 53.947 30.066 49502000 0 16560000 23189000 9752800 0 0 1445 919 1425 6467;6468;6469 4354 4354 1 DMAAPGTSSVPAPTAGNAEK Unmodified 1870.8731 0.87309151 1243 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 106.23 97.384 2 0.035281 1 71785 20150910_Q1_SA_NiHu_Masterprac_group13_C 33.667 22.292 1886700 0 0 823560 1063200 0 0 1446 1243 1426 6470;6471 4355 4355 1 DMAEMQRVWKEK Oxidation (M) 1565.733 0.73303298 1128 Q15058 KIF14 Kinesin-like protein KIF14 yes yes 0 1 2 By MS/MS By matching By matching By matching By matching By matching 1 131.47 115.78 2 0.0010076 1 77033 20150910_Q1_SA_NiHu_Masterprac_group10_C 92.112 34.545 19751000 19751000 0 0 0 0 0 1447 1128 1427 6472 4356 4356 140 1 DMAQSIYRPSKNLDK Unmodified 1764.8829 0.88286834 583 Q13573;G3V3A4;G3V4X8 SNW1 SNW domain-containing protein 1 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 100.42 91.105 3 6.1813E-15 3 61247 20150910_Q1_SA_NiHu_Masterprac_group10_B 99.991 62.466 10138000 1513200 0 2228200 1434300 1670500 3291400 1448 583 1428 6473;6474;6475;6476;6477;6478 4357;4358;4359 4359 3 DMEIAQTQK Unmodified 1062.5016 0.5015597 388 E7EVA0;P27816-6;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 66.298 56.246 2 0.022182 2 45350 20150910_Q1_SA_NiHu_Masterprac_group13_C 68.626 24.857 3348100 711630 725620 1053400 0 857360 0 1449 388 1429 6479;6480;6481;6482 4360;4361 4360 2 DMELPTEK Unmodified 961.44265 0.44264784 388 E7EVA0;P27816-6;P27816;P27816-2;P27816-5;B9ZVR1;H7C456 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 1 1 1 95.976 88.296 2 0.0063494 5 64827 20150910_Q1_SA_NiHu_Masterprac_group15_C 95.741 65.424 11656000 3109800 1441300 0 2150300 4954800 0 1450 388 1430 6483;6484;6485;6486;6487 4362;4363;4364;4365;4366 4363 5 DMESPTKLDVTLAK Unmodified 1546.7913 0.79125936 388 E7EVA0;P27816-6;P27816;P27816-2;P27816-5;B9ZVR1;H7C456 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 130.4 130.1 3 0.0011281 1 83310 20150910_Q1_SA_NiHu_Masterprac_group10_B 74.475 54.092 4022400 0 1406300 0 2616200 0 0 1451 388 1431 6488;6489 4367 4367 1 DMGYGNWISKPQEEK Unmodified 1780.809 0.80903469 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 2 130.98 119.64 2;3 0 8 85640 20150910_Q1_SA_NiHu_Masterprac_group15_B 218.63 170.86 170540000 39815000 251550 36533000 5742000 16277000 71921000 1452 352;968 1432 6490;6491;6492;6493;6494;6495;6496;6497;6498;6499 4368;4369;4370;4371;4372;4373;4374;4375 4371 8 DMPIQAFLLYQEPVLGPVRGPFPIIV Unmodified 2908.5925 0.59249397 290 CON__P02666 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 134.57 131.79 3 9.2062E-05 2 89917 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.998 43.377 45556000 0 18757000 0 0 0 26799000 + 1453 290 1433 6500;6501 4376;4377 4376 2 DMPLSSDGNPKVNEK Unmodified 1629.7668 0.76683553 1591 Q9UGU0-2;Q9UGU0 TCF20 Transcription factor 20 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 84.023 77.343 3 0.0042544 3 60044 20150910_Q1_SA_NiHu_Masterprac_group13_C 54.898 33.649 3639500 761180 0 967450 766310 0 1144600 1454 1591 1434 6502;6503;6504;6505 4378;4379;4380 4379 3 DMRQTVAVGVIK Unmodified 1315.7282 0.7282056 1006 Q5VTE0;P68104;Q6IQ15;Q05639 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 119.43 110.65 2;3 3.8986E-10 8 73561 20150910_Q1_SA_NiHu_Masterprac_group10_C 107.09 50.544 98496000 12273000 15428000 13842000 6019700 1705500 49228000 1455 1006 1435 6506;6507;6508;6509;6510;6511;6512;6513;6514;6515;6516 4381;4382;4383;4384;4385;4386;4387;4388 4388 8 DMRQTVAVGVIKAVDK Oxidation (M) 1744.9506 0.95055397 1006 Q5VTE0;P68104;Q6IQ15 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 1 2 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 121.42 119.63 3 4.6045E-50 2 76996 20150910_Q1_SA_NiHu_Masterprac_group10_B 124.04 88.21 31371000 0 11528000 0 19086000 0 757060 1456 1006 1436 6517;6518;6519 4389;4390 4390 119 2 DMRQTVAVGVIKAVDK Unmodified 1728.9556 0.95563935 1006 Q5VTE0;P68104;Q6IQ15 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 133.1 123.73 3;4 4.4612E-64 7 79067 20150910_Q1_SA_NiHu_Masterprac_group10_C 129.88 88.334 2733400000 420980000 551270000 256820000 267750000 972690000 263920000 1457 1006 1436 6520;6521;6522;6523;6524;6525;6526;6527 4391;4392;4393;4394;4395;4396;4397 4397 6 DMSALVAAR Unmodified 932.47495 0.47495102 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 2 1 1 1 1 117.07 105.74 2 0.026416 2 70960 20150910_Q1_SA_NiHu_Masterprac_group10_C 66.299 25.417 19207000 2269300 0 3261900 1731100 3196500 8747900 1458 487 1437 6528;6529;6530;6531;6532;6533 4398;4399 4399 2 DMSMLEER Unmodified 1009.4209 0.42086654 1093 Q14008-2;Q14008;Q14008-3;H0YEK7 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 108.57 98.368 2 0.034579 1 67040 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.812 49.024 2811300 0 0 0 0 721700 2089600 1459 1093 1438 6534;6535 4400 4400 1 DMTAQFNNLGVLHVTKK Unmodified 1914.9986 0.9985668 1021 Q00653-3;Q00653-4;Q00653 NFKB2 Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 133.42 128.45 3 1.7509E-05 1 88505 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.859 53.54 0 0 0 0 0 0 0 1460 1021 1439 6536 4401 4401 1 DMTHWRQNTEK Unmodified 1444.6517 0.65174619 1409 Q96N67-4;Q96N67-3;Q96N67-5;Q96N67-2;Q96N67-6;Q96N67;H0Y7L2;F8W9H6 DOCK7 Dedicator of cytokinesis protein 7 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 61.543 53.71 3 0.014348 1 43651 20150910_Q1_SA_NiHu_Masterprac_group15_C 60.064 38.393 2692700 0 337500 779650 640280 935260 0 1461 1409 1440 6537;6538;6539;6540 4402 4402 1 DMVGIAQTGSGK Unmodified 1162.5652 0.56522259 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 89.04 81.191 2 0.00092463 6 56569 20150910_Q1_SA_NiHu_Masterprac_group10_C 92.856 54.862 72313000 8736200 11688000 7480200 4444400 18748000 21217000 1462 1361;629 1441 6541;6542;6543;6544;6545;6546;6547 4403;4404;4405;4406;4407;4408 4408 6 DMYGDDLEAR Unmodified 1183.4816 0.48155254 583 Q13573;G3V3A4;G3V4X8 SNW1 SNW domain-containing protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 104.63 92.436 2 0.019916 1 63201 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.694 55.89 7641400 0 0 1397300 0 1146600 5097600 1463 583 1442 6548;6549;6550 4409 4409 1 DMYNDTLNGSTEK Unmodified 1486.6246 0.62458797 1412 Q96PU8-3;Q96PU8;Q96PU8-5;Q96PU8-9;Q96PU8-8;Q96PU8-6 QKI Protein quaking yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 93 85.171 2 2.7789E-09 5 64538 20150910_Q1_SA_NiHu_Masterprac_group13_C 104.17 92.803 13997000 641720 2601000 2351700 1504700 1939100 4958800 1464 1412 1443 6551;6552;6553;6554;6555;6556 4410;4411;4412;4413;4414 4410 5 DNAEAISGHSVEADPK Unmodified 1638.7485 0.74854293 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 74.075 67.406 3 0.019093 1 46889 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.055 39.563 1864600 0 625570 0 0 580890 658130 1465 1325 1444 6557;6558;6559 4415 4415 0 DNAEAISGHSVEADPKEVEEEER Unmodified 2539.131 0.13103335 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 101.13 98.071 4 0.040517 1 66878 20150910_Q1_SA_NiHu_Masterprac_group15_B 30.813 14.014 1803000 0 0 0 0 0 1803000 1466 1325 1445 6560 4416 4416 1 DNFYQHNVEK Unmodified 1292.5786 0.57856447 1268 Q86W56-3;Q86W56-2;Q86W56 PARG Poly(ADP-ribose) glycohydrolase yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 64.905 61.821 2 0.0056592 1 43172 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.463 55.894 2156800 299550 728270 0 273630 0 855330 1467 1268 1446 6561;6562;6563;6564 4417 4417 1 DNKPEEEEQVIHEDDERPSEK Unmodified 2551.131 0.13103335 488 Q6VMQ6-2;G3V1U0;Q6VMQ6;F5GX74 ATF7IP Activating transcription factor 7-interacting protein 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 80.181 73.229 4 0.00015776 1 50734 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.339 46.178 3836100 0 1053600 1256200 0 0 1526300 1468 488 1447 6565;6566;6567 4418 4418 1 DNLPLQENVTIQK Unmodified 1510.7991 0.79912193 193 B7Z6Q6;Q99661;Q99661-2;Q5JR91;Q5JR89 KIF2C Kinesin-like protein KIF2C yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 131.57 122.07 2 5.4435E-75 5 86456 20150910_Q1_SA_NiHu_Masterprac_group15_B 142.39 86.413 108160000 7651400 58509000 7241600 4723300 2750300 27281000 1469 193 1448 6568;6569;6570;6571;6572;6573 4419;4420;4421;4422;4423 4420 4 DNLPLQENVTIQKQK Unmodified 1766.9527 0.95266246 193 B7Z6Q6;Q99661;Q99661-2;Q5JR91;Q5JR89 KIF2C Kinesin-like protein KIF2C yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 118.94 108.99 2;3 1.5E-104 6 74658 20150910_Q1_SA_NiHu_Masterprac_group15_B 145.1 130.71 42070000 5360700 10365000 6918900 2226700 5883900 11315000 1470 193 1449 6574;6575;6576;6577;6578;6579;6580;6581;6582;6583;6584;6585;6586 4424;4425;4426;4427;4428;4429 4426 6 DNQESSDAELSSSEYIK Unmodified 1900.8174 0.81741035 1399 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 109.89 106.23 2 0.0061227 1 72700 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.337 35.476 699360 0 0 0 0 0 699360 1471 1399 1450 6587 4430 4430 1 DNQLSEVANKFAK Unmodified 1462.7416 0.74160705 1120 Q14978;Q14978-3;Q14978-2 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 2 131 130.39 2;3 2.3046E-15 2 83820 20150910_Q1_SA_NiHu_Masterprac_group10_B 108.98 76.546 6534900 0 6534900 0 0 0 0 1472 1120 1451 6588;6589 4431;4432 4432 2 DNQNFCVPCYEK Unmodified 1572.6337 0.63371286 1101 Q14192 FHL2 Four and a half LIM domains protein 2 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 122.31 112.28 2 7.3038E-12 3 80390 20150910_Q1_SA_NiHu_Masterprac_group13_C 107.99 91.902 11085000 0 0 3548100 1365100 1281600 4890000 1473 1101 1452 6590;6591;6592;6593 4433;4434;4435 4434 3 DPSVLIKTAIR Unmodified 1211.7238 0.72377215 1285 Q8IX12-2;Q8IX12;F5H1H2;F5H3E1;F5H2E6 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 123.48 113.35 3 0.0068094 1 77335 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.721 29.872 1342200 435140 0 0 0 0 907050 1474 1285 1453 6594;6595 4436 4436 1 DQDAIETDAMIKK Unmodified 1476.713 0.71300904 896 P35251-2;P35251 RFC1 Replication factor C subunit 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 2 1 2 97.804 91.967 2;3 0.0011548 7 62855 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.438 46.97 12146000 0 2464200 1631100 2242000 1958400 3850800 1475 896 1454 6596;6597;6598;6599;6600;6601;6602;6603;6604 4437;4438;4439;4440;4441;4442;4443 4438 7 DQDELKPGPTNR Unmodified 1368.6634 0.66335673 1097 Q14151 SAFB2 Scaffold attachment factor B2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 52.056 46.031 2;3 3.2975E-37 12 33150 20150910_Q1_SA_NiHu_Masterprac_group15_B 126.12 90.623 73303000 6757200 12150000 8883400 7048300 16571000 21893000 1476 1097 1455 6605;6606;6607;6608;6609;6610;6611;6612;6613;6614;6615;6616 4444;4445;4446;4447;4448;4449;4450;4451;4452;4453;4454;4455 4449 12 DQDLTIPESSTVK Unmodified 1431.7093 0.70930387 1169 Q49A26-5 GLYR1 Putative oxidoreductase GLYR1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 116.28 108.81 2 0.0022324 1 74471 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.234 46.175 1790500 0 464300 0 0 395520 930730 1477 1169 1456 6617;6618;6619 4456 4456 1 DQEALMKSVK Unmodified 1147.5907 0.59070906 682 I3L1L3;Q9BQG0;Q9BQG0-2;E7EN09 MYBBP1A Myb-binding protein 1A yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 73.367 72.112 2 0.026481 1 50004 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.9 16.985 393140 0 0 0 0 0 393140 1478 682 1457 6620 4457 4457 1 DQGGFGDRNEYGSR Unmodified 1556.6604 0.66039662 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 2 1 65.202 57.676 3 0.0011285 5 40604 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.36 62.314 185170000 15405000 30926000 17965000 9919100 33615000 77340000 1479 1366 1458 6621;6622;6623;6624;6625;6626;6627;6628 4458;4459;4460;4461;4462 4459 5 DQGGFGDRNEYGSRIGGGIDVPVPR Unmodified 2617.2633 0.26332535 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 133.25 117.56 4 0.0041226 1 79033 20150910_Q1_SA_NiHu_Masterprac_group10_C 39.767 22.164 27792000 27792000 0 0 0 0 0 1480 1366 1459 6629 4463 4463 1 DQIVDLTVGNNK Unmodified 1314.6779 0.67794416 899 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 2 2 121.93 119.92 2 3.7356E-166 2 77391 20150910_Q1_SA_NiHu_Masterprac_group10_B 171.62 107.39 31509000 0 21396000 0 2159300 0 7953700 + 1481 899 1460 6630;6631;6632;6633;6634 4464;4465 4465 2 DQLDSTGRPLVILPQRK Unmodified 1935.0902 0.090158996 1618 Q9UNY4 TTF2 Transcription termination factor 2 yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 129.3 129.3 4 0.0093889 1 82431 20150910_Q1_SA_NiHu_Masterprac_group13_B 42.958 31.919 1561500 0 0 0 1561500 0 0 1482 1618 1461 6635 4466 4466 1 DQLIIDAGQK Unmodified 1099.5873 0.58733824 1176 Q56NI9;H0YB88;Q49AP4 ESCO2 N-acetyltransferase ESCO2 yes no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 105.78 96.354 2 0.016563 2 69740 20150910_Q1_SA_NiHu_Masterprac_group15_C 66.56 33.37 44999000 0 0 8570000 10104000 4913600 21411000 1483 1176 1462 6636;6637;6638;6639 4467;4468 4468 2 DQLSQSIVMYK Unmodified 1310.654 0.6540376 23 A6NHR9;A6NHR9-2;A6NHR9-3 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 131.9 131.6 2 0.0023914 2 84706 20150910_Q1_SA_NiHu_Masterprac_group10_B 87.667 56.32 11535000 0 6524700 0 5009900 0 0 1484 23 1463 6640;6641 4469;4470 4470 2 DQNIVGNARPKETDHK Unmodified 1820.9129 0.91292291 1454 Q9BVI0;Q5JWZ0;Q5JXL1;B0QYY0;Q9BVI0-2 PHF20 PHD finger protein 20 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 49.613 43.822 3 0.036658 1 31330 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.391 32.186 6140700 890360 949540 920280 892530 1474200 1013800 1485 1454 1464 6642;6643;6644;6645;6646;6647 4471 4471 1 DQVTAQEIFQDNHEDGPTAK Unmodified 2242.0138 0.013818748 830 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 131.59 115.9 3 1.1301E-07 1 77218 20150910_Q1_SA_NiHu_Masterprac_group10_C 82.755 70.044 5680000 5680000 0 0 0 0 0 1486 830 1465 6648 4472 4472 0 DQWEKALCRALR Unmodified 1544.7882 0.78818009 690 O00411 POLRMT DNA-directed RNA polymerase, mitochondrial yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 65.071 63.916 3 0.026942 1 44714 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.346 20.778 0 0 0 0 0 0 0 1487 690 1466 6649 4473 4473 1 DRETMGHRYVEVFK Unmodified 1765.857 0.85698794 322;970 D6RBM0;E9PCY7;P31943;G8JLB6;D6RIU0;D6RAM1;D6R9T0;D6RFM3;D6RIT2;D6RDU3;D6RJ04;D6RIH9;E7EQJ0;H0YAQ2;P55795;B4DFK9 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H2, N-terminally processed no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 102.87 92.99 4 0.01183 1 63487 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.532 14.916 13841000 0 0 5688400 0 0 8152900 1488 322;970 1467 6650;6651 4474 4474 1 DRLLASTLVHSVK Unmodified 1437.8304 0.83036248 1563;452 Q9NYF8-2;Q9NYF8;Q9NYF8-4;E9PK09;E9PQN2;E9PKI6;E9PJA7;Q9NYF8-3;E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 128.14 116.88 3 6.8527E-110 4 81758 20150910_Q1_SA_NiHu_Masterprac_group13_C 150.9 116.9 218950000 128720000 0 54517000 3446700 13028000 19239000 1489 1563;452 1468 6652;6653;6654;6655;6656 4475;4476;4477;4478 4475 4 DRLLASTLVHSVKK Unmodified 1565.9253 0.9253255 1563;452 Q9NYF8-2;Q9NYF8;Q9NYF8-4;E9PK09;E9PQN2;E9PKI6;E9PJA7;Q9NYF8-3;E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 112.27 103.06 3 0.016048 1 75391 20150910_Q1_SA_NiHu_Masterprac_group13_C 56.46 47.424 8835700 0 864130 2835200 3517200 1619100 0 1490 1563;452 1469 6657;6658;6659;6660 4479 4479 1 DRPENVHGGILADDMGLGK Unmodified 1992.9687 0.96872323 1107 Q14527;Q14527-2;E7ESN4;F5H3D6 HLTF Helicase-like transcription factor yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 1 130.51 124.81 3;4 1.5854E-51 7 82611 20150910_Q1_SA_NiHu_Masterprac_group10_B 117.29 117.29 83000000 4827600 21641000 11074000 3600200 0 41857000 1491 1107 1470 6661;6662;6663;6664;6665;6666;6667 4480;4481;4482;4483;4484;4485;4486 4485 7 DSALVEESNGTLEEK Unmodified 1619.7526 0.75262525 1597 Q9UJA5;B4DUV6;Q9UJA5-3;Q9UJA5-2 TRMT6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 108.11 97.577 2 0.0011826 2 66315 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.431 50.525 7286700 459660 1411900 1199600 0 1649400 2566200 1492 1597 1471 6668;6669;6670;6671;6672 4487;4488 4487 2 DSALVPGASKQPLTSPSALVDSKQESK Unmodified 2739.4291 0.42905327 1117 Q14865-2;Q14865 ARID5B AT-rich interactive domain-containing protein 5B yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 131.1 130.49 3 0.0022355 1 83887 20150910_Q1_SA_NiHu_Masterprac_group10_B 42.557 24.795 12463000 0 12463000 0 0 0 0 1493 1117 1472 6673 4489 4489 1 DSAQTSVTQAQR Unmodified 1290.6164 0.61640654 1121 Q14980-2;Q14980;F5H4J1;F5H6Y5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 41.707 37.16 2 0.011869 2 26293 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.434 34.856 1154100 0 515080 251230 0 0 387810 1494 1121 1473 6674;6675;6676 4490;4491 4491 2 DSAQTSVTQAQREK Unmodified 1547.754 0.75396265 1121 Q14980-2;Q14980;F5H4J1;F5H6Y5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 43.304 38.119 3 9.4187E-42 6 30692 20150910_Q1_SA_NiHu_Masterprac_group13_C 120.87 84.353 22996000 2405300 4655700 3068600 1309400 3925200 7632100 1495 1121 1474 6677;6678;6679;6680;6681;6682 4492;4493;4494;4495;4496;4497 4493 6 DSASLFVVAR Unmodified 1063.5662 0.56620887 1641 Q9Y2Y9 KLF13 Krueppel-like factor 13 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.83 132.22 2 0.0027514 1 85891 20150910_Q1_SA_NiHu_Masterprac_group10_B 98.048 66.554 7924100 0 7924100 0 0 0 0 1496 1641 1475 6683 4498 4498 1 DSAVNAICYGAK Unmodified 1267.5867 0.58668632 733 O60832;O60832-2;H7C2Q2 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 100.14 92.46 2 0.0018107 3 69009 20150910_Q1_SA_NiHu_Masterprac_group13_C 80.834 51.876 10405000 0 1663200 2850100 1442900 2345800 2102700 1497 733 1476 6684;6685;6686;6687;6688 4499;4500;4501 4500 3 DSDENLTDAEGK Unmodified 1292.5368 0.53681882 1219 Q69YH5;E9PEI0 CDCA2 Cell division cycle-associated protein 2 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 59.766 51.895 2 0.0017862 4 37186 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.709 81.709 2623800 0 701770 675950 0 173390 1072700 1498 1219 1477 6689;6690;6691;6692 4502;4503;4504;4505 4503 4 DSDGVDGFEAEGK Unmodified 1324.5419 0.54190419 1403 Q96KR1 ZFR Zinc finger RNA-binding protein yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 91.657 83.895 2 0.0018416 3 57461 20150910_Q1_SA_NiHu_Masterprac_group10_B 73.386 67.973 11876000 1007800 2326300 3148600 1046700 4011400 334700 1499 1403 1478 6693;6694;6695;6696;6697;6698 4506;4507;4508 4508 3 DSDGVDGFEAEGKKDK Unmodified 1695.7588 0.75877326 1403 Q96KR1 ZFR Zinc finger RNA-binding protein yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 63.583 62.428 3 0.039809 1 43751 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.209 43.582 0 0 0 0 0 0 0 1500 1403 1479 6699 4509 4509 1 DSEEFGENEEENVHSK Unmodified 1877.7551 0.75514445 1554 Q9NWH9;H7BXE3;H0YL55;H0YKU6 SLTM SAFB-like transcription modulator yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1 75.626 67.686 2;3 9.1157E-98 7 47487 20150910_Q1_SA_NiHu_Masterprac_group10_B 139.66 130.38 20750000 2386900 3671300 3494000 1753700 6044700 3399400 1501 1554 1480 6700;6701;6702;6703;6704;6705;6706;6707 4510;4511;4512;4513;4514;4515;4516 4515 7 DSEEQQLQPQAK Unmodified 1399.6579 0.657937 1182 Q5H9F3-3;Q5H9F3-2;Q5H9F3;H7C4B2 BCORL1 BCL-6 corepressor-like protein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 60.865 54.189 2 2.0127E-22 6 38435 20150910_Q1_SA_NiHu_Masterprac_group15_B 129 90.042 10403000 789890 1051200 1553200 951050 1606400 4451000 1502 1182 1481 6708;6709;6710;6711;6712;6713 4517;4518;4519;4520;4521;4522 4519 5 DSEKENQIPEEAGSSGLGK Unmodified 1973.9178 0.9177931 1124 Q15004;H0YMA4;H0YKX3 KIAA0101 PCNA-associated factor yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 91.16 83.414 3 0.00051506 3 56766 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.105 32.775 25297000 1732500 5145600 8108000 1108900 1869200 7333100 1503 1124 1482 6714;6715;6716;6717;6718;6719 4523;4524;4525 4524 3 DSEKENQIPEEAGSSGLGKAK Unmodified 2173.0499 0.049869904 1124 Q15004;H0YMA4;H0YKX3 KIAA0101 PCNA-associated factor yes no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 2 2 2 2 2 83.701 76.204 3;4 2.5303E-05 2 52177 20150910_Q1_SA_NiHu_Masterprac_group13_B 67.928 40.498 20953000 801360 2903700 7766600 1827400 1874600 5779800 1504 1124 1483 6720;6721;6722;6723;6724;6725;6726;6727;6728;6729;6730 4526;4527 4526 2 DSELNQKRPQYIK Unmodified 1617.8475 0.84746911 1110 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 71.494 65.769 3 0.0069717 1 45853 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.695 41.195 5384900 615930 1194800 723740 654230 0 2196300 1505 1110 1484 6731;6732;6733;6734;6735 4528 4528 1 DSENTPVKGGTVADLDEQDEETVTAGGK Unmodified 2861.305 0.30503455 1365 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 130.22 113.38 3 0.00014053 2 80623 20150910_Q1_SA_NiHu_Masterprac_group13_C 49.094 35.378 5215200 2247700 0 2967500 0 0 0 1506 1365 1485 6736;6737 4529;4530 4529 2 DSEPLGIEEAQIGK Unmodified 1484.7359 0.73585297 218 B9ZVN9;O95602 POLR1A DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.47 130.87 2 1.3621E-07 1 84312 20150910_Q1_SA_NiHu_Masterprac_group10_B 95.854 79.234 6296400 0 6296400 0 0 0 0 1507 218 1486 6738 4531 4531 1 DSETVDEDEEVDPALTVGTIKK Unmodified 2389.1384 0.13841014 1112 Q14690;F5H7X0 PDCD11 Protein RRP5 homolog yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 132.42 120.99 3 4.3825E-134 3 84720 20150910_Q1_SA_NiHu_Masterprac_group10_B 137.99 121.59 33067000 11330000 11575000 10163000 0 0 0 1508 1112 1487 6739;6740;6741 4532;4533;4534 4533 3 DSFDDRGPSLNPVLDYDHGSR Unmodified 2361.0622 0.062165924 52 P43243;A8MXP9;D6REM6;D6R991 MATR3 Matrin-3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 132.93 127.97 4 1.619E-05 1 87969 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.897 62.136 20903000 0 0 0 0 0 20903000 1509 52 1488 6742 4535 4535 1 DSFHSLRDSVPSLQGEK Unmodified 1900.9279 0.92790427 981 P61244-2;P61244;Q6V3B1;P61244-3;G3V563;G3V2R5;P61244-4;E7ESS7;A6NH73;P61244-5 MAX Protein max yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 129.98 124.66 3 0.0063591 3 81985 20150910_Q1_SA_NiHu_Masterprac_group13_B 46.249 26.58 16973000 2418700 1435600 0 684860 0 12433000 1510 981 1489 6743;6744;6745;6746 4536;4537;4538 4536 3 DSFIGENSR Unmodified 1023.4621 0.46213773 193;403;686 B7Z6Q6;Q99661;Q99661-2;B7Z7M6;H0Y5Z9;O00139-1;E9PB70;O00139;O00139-4;O00139-2 KIF2C;KIF2A Kinesin-like protein KIF2C;Kinesin-like protein KIF2A no no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 75.893 68.448 2 0.024764 3 54094 20150910_Q1_SA_NiHu_Masterprac_group13_C 67.207 43.887 21811000 1358500 3327600 2653900 819130 3239000 10413000 1511 193;403;686 1490 6747;6748;6749;6750;6751;6752 4539;4540;4541 4539 3 DSGTEDMLWTEK Unmodified 1410.5973 0.59731058 1415 Q96QE3;Q96QE3-2 ATAD5 ATPase family AAA domain-containing protein 5 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.44 130.83 2 0.0036853 1 84269 20150910_Q1_SA_NiHu_Masterprac_group10_B 68.463 50.725 1476600 0 1476600 0 0 0 0 1512 1415 1491 6753 4542 4542 1 DSHPSEEPVKSFSK Unmodified 1572.742 0.74200098 190 B7Z5N6;Q5T1V6-2;Q5T1V6;Q5T1V5 DDX59 Probable ATP-dependent RNA helicase DDX59 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 1 1 64.128 57.067 3 0.0011287 5 40554 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.681 53.775 18274000 5014500 2084000 2775600 2256000 2799800 3343700 1513 190 1492 6754;6755;6756;6757;6758;6759;6760 4543;4544;4545;4546;4547 4544 5 DSIFEPAK Unmodified 905.44945 0.44944778 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 101.73 90.163 2 0.008061 3 61593 20150910_Q1_SA_NiHu_Masterprac_group10_C 103.83 54.736 27236000 2726800 0 2030400 0 5888300 16591000 1514 352;968 1493 6761;6762;6763;6764 4548;4549;4550 4550 3 DSIFEPAKGGEK Unmodified 1276.6299 0.62993134 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 2 82.732 75.337 2;3 2.9163E-18 12 57054 20150910_Q1_SA_NiHu_Masterprac_group15_C 117.86 117.86 179100000 17609000 21896000 12330000 7772600 43684000 75805000 1515 352;968 1494 6765;6766;6767;6768;6769;6770;6771;6772;6773;6774 4551;4552;4553;4554;4555;4556;4557;4558;4559;4560;4561;4562 4557 12 DSIFEPAKGGEKLQIK Unmodified 1758.9516 0.95159983 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 131.13 113.99 3 0.0062484 2 81843 20150910_Q1_SA_NiHu_Masterprac_group13_C 59.884 40.896 17286000 5947500 0 7045100 0 4293800 0 1516 352;968 1495 6775;6776;6777 4563;4564 4563 2 DSLADRALLPHVLCK Unmodified 1706.9138 0.91377454 640 H3BQZ7;Q1KMD3 hCG_2044799;HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.98 132.38 3 0.0059153 1 85977 20150910_Q1_SA_NiHu_Masterprac_group10_B 52.008 19.578 15757000 0 15757000 0 0 0 0 1517 640 1496 6778 4565 4565 1 DSLDQFDCK Unmodified 1126.4601 0.46008882 227 C9J4N8;Q9HAV4;E7EQN7;H0Y3W3 XPO5 Exportin-5 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 91.609 87.03 2 0.0016558 2 59291 20150910_Q1_SA_NiHu_Masterprac_group15_B 106.88 85.432 6455500 646420 1248500 0 0 0 4560600 1518 227 1497 6779;6780;6781 4566;4567 4566 2 DSLIELK Unmodified 816.45928 0.45928418 1330 Q8NI27;Q8NI27-2;B7ZBA0;H0Y594;H0Y7U4 THOC2 THO complex subunit 2 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 129.95 112.08 2 0.027408 1 80942 20150910_Q1_SA_NiHu_Masterprac_group13_C 86.472 31.708 2322800 0 0 2120600 0 202180 0 1519 1330 1498 6782;6783 4568 4568 1 DSLIELKESSAK Unmodified 1318.698 0.6980109 1330 Q8NI27;Q8NI27-2;B7ZBA0;H0Y594;H0Y7U4 THOC2 THO complex subunit 2 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 102.3 94.598 2 0.0051694 2 70413 20150910_Q1_SA_NiHu_Masterprac_group13_C 88.803 67.795 7241800 1138400 0 2297800 1338900 0 2466800 1520 1330 1499 6784;6785;6786;6787 4569;4570 4570 2 DSLITPHVSR Unmodified 1123.5986 0.59857163 945;1251 P49792;E9PGT0;P0DJD0;P0DJD1;F8VYC4;Q99666;O14715;E7ES93;B4DTM4;H7BZ48;Q7Z3J3 RANBP2;RGPD1;RGPD2;RGPD5;RGPD8;RGPD6;RGPD4 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8;RanBP2-like and GRIP domain-containing protein 4 no no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 93.41 85.581 2 0.033197 1 58072 20150910_Q1_SA_NiHu_Masterprac_group10_B 56.043 35.756 11140000 871510 1395000 1436200 1628200 2609100 3199400 1521 945;1251 1500 6788;6789;6790;6791;6792;6793 4571 4571 1 DSLVQSCPGSLSLCAGVK Unmodified 1876.9023 0.90228315 1623 Q9UQ35;F5GWZ7;Q9UQ35-2;I3L2L6 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 133.15 132.54 2 4.7105E-183 1 86124 20150910_Q1_SA_NiHu_Masterprac_group10_B 160.45 124.97 79760000 0 79760000 0 0 0 0 1522 1623 1501 6794 4572 4572 1 DSMEINEADFRWQR Oxidation (M) 1811.7897 0.78969623 174 B5MDV5;Q5TH69 KIAA1244;ARFGEF3 Brefeldin A-inhibited guanine nucleotide-exchange protein 3 yes no 0 1 1 By matching By matching By matching By matching By MS/MS By matching 1 77.843 62.302 2 0.03288 1 49171 20150910_Q1_SA_NiHu_Masterprac_group15_C 50.897 29.476 303050 0 0 0 0 303050 0 1523 174 1502 6795 4573 4573 16 1 DSNNLCLHFNPR Unmodified 1485.6783 0.67829529 812 P09382 LGALS1 Galectin-1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 124.51 115.02 2;3 3.972E-07 11 79414 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.72 75.012 121280000 15699000 11607000 27865000 3209700 31223000 31677000 1524 812 1503 6796;6797;6798;6799;6800;6801;6802;6803;6804;6805;6806;6807 4574;4575;4576;4577;4578;4579;4580;4581;4582;4583;4584 4578 11 DSNNLCLHFNPRFNAHGDANTIVCNSK Unmodified 3114.4148 0.41483374 812 P09382 LGALS1 Galectin-1 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 132.09 131.79 4 1.7999E-13 2 84633 20150910_Q1_SA_NiHu_Masterprac_group13_B 72.286 57.568 39946000 0 21791000 0 18155000 0 0 1525 812 1504 6808;6809 4585;4586 4585 2 DSPSVCSNLAAK Unmodified 1247.5816 0.58160094 1590 Q9UGR2-2;Q9UGR2 ZC3H7B Zinc finger CCCH domain-containing protein 7B yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 79.225 72.489 2 0.025686 1 50567 20150910_Q1_SA_NiHu_Masterprac_group10_B 49.448 17.851 2124000 0 314390 0 0 741060 1068500 1526 1590 1505 6810;6811;6812 4587 4587 1 DSQLIVSSAK Unmodified 1046.5608 0.56078914 1253 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3;Q8WVX6 WAPAL Wings apart-like protein homolog yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 79.329 72.594 2 0.025409 1 50618 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.265 25.178 2800600 0 862330 0 0 509270 1429000 1527 1253 1506 6813;6814;6815 4588 4588 1 DSQVGTVNYMPPEAIK Unmodified 1747.8451 0.84508585 891 P33981-2;P33981 TTK Dual specificity protein kinase TTK yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.36 131.75 2 0.032781 1 85277 20150910_Q1_SA_NiHu_Masterprac_group10_B 38.219 3.1277 2265100 0 2265100 0 0 0 0 1528 891 1507 6816 4589 4589 1 DSRPSQAAGDNQGDEAK Unmodified 1744.7612 0.76123288 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 27.509 23.974 3 0.00025637 4 16295 20150910_Q1_SA_NiHu_Masterprac_group13_B 71.263 61.017 14804000 1807400 2584900 7797200 1315000 534860 764930 1529 1639 1508 6817;6818;6819;6820;6821;6822 4590;4591;4592;4593 4590 4 DSRPSQAAGDNQGDEAKEQTFSGGTSQDTK Unmodified 3111.3613 0.36132065 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 69.819 62.414 3;4 8.4624E-64 7 45427 20150910_Q1_SA_NiHu_Masterprac_group10_C 105.25 105.25 89726000 24781000 3116300 22661000 23733000 8391700 7042300 1530 1639 1509 6823;6824;6825;6826;6827;6828;6829 4594;4595;4596;4597;4598;4599;4600 4600 7 DSSDPNELYVNHK Unmodified 1516.6794 0.67940073 704 O15160-2;O15160;E7EQB9;H0Y9C4;D6RDJ3;E9PDD3 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 70.205 68.123 3 0.0070962 1 47306 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.106 34.556 2962200 0 1058400 0 0 0 1903700 1531 704 1510 6830;6831 4601 4601 1 DSSGWSSSKDKDAYSSFGSR Unmodified 2152.9298 0.92975477 693 O00571;O00571-2;B4DLU5;B4E3C4;B4DLA0 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 99.636 91.915 3;4 0.0017145 6 62851 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.01 47.182 23953000 0 2767500 4550100 2890100 5430100 8314900 1532 693 1511 6832;6833;6834;6835;6836;6837;6838;6839;6840;6841 4602;4603;4604;4605;4606;4607 4604 6 DSSKPPFSLENHSACLDSVAK Unmodified 2288.0743 0.074310515 39 Q7Z5J4-3;E7EVZ3;Q7Z5J4;A8MTC3;Q7Z5J4-2;C9JWB0;A8MXE8;Q7Z5J4-4;E7ETW1 RAI1 Retinoic acid-induced protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 131.25 126.29 4 0.034489 1 86088 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.292 14.021 5602400 0 0 0 0 0 5602400 1533 39 1512 6842 4608 4608 0 DSSSTDSANEKPALIPR Unmodified 1786.8697 0.86972069 246 F8VZ02;C9JGM8;C9JW67;F8W6C2;Q9NUQ6-2;F2Z2S1;C9JKE4;F8VT91;B8ZZZ7;Q9NUQ6;B4DT67 SPATS2L SPATS2-like protein yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 96.467 87.012 3 0.00017362 4 59488 20150910_Q1_SA_NiHu_Masterprac_group15_B 85.976 73.484 12689000 886700 3156400 2841400 0 1321200 4483700 1534 246 1513 6843;6844;6845;6846;6847 4609;4610;4611;4612 4610 4 DSSSTDSANEKPALIPREK Unmodified 2044.0073 0.0072768075 246 F8VZ02;C9JGM8;C9JW67;F8W6C2;Q9NUQ6-2;F2Z2S1;C9JKE4;F8VT91;B8ZZZ7;Q9NUQ6;B4DT67 SPATS2L SPATS2-like protein yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 80.107 74.241 3 0.0011909 3 58218 20150910_Q1_SA_NiHu_Masterprac_group13_C 67.902 67.902 6639500 653120 1507400 2322400 797410 0 1359100 1535 246 1514 6848;6849;6850;6851;6852 4613;4614;4615 4614 3 DSVAQGTTNVHSSEHAGR Unmodified 1851.846 0.84596556 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 2 2 2 2 2 41.405 36.36 3;4 0.0011555 4 25377 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.82 61.193 30733000 830750 6150600 5867800 1731100 3169800 12983000 1536 919 1515 6853;6854;6855;6856;6857;6858;6859;6860;6861;6862;6863 4616;4617;4618;4619 4616 4 DSVAQGTTNVHSSEHAGRNGR Unmodified 2179.0115 0.011467758 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 36.54 31.727 3;5 0.002537 4 21850 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.907 29.972 22636000 1464200 1815200 3391100 1991700 3254300 10719000 1537 919 1516 6864;6865;6866;6867;6868;6869;6870;6871;6872;6873;6874 4620;4621;4622;4623 4621 4 DSVEENMLK Unmodified 1063.4856 0.48557529 1107 Q14527;Q14527-2 HLTF Helicase-like transcription factor yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 96.283 88.5 2 0.014268 1 60090 20150910_Q1_SA_NiHu_Masterprac_group10_B 78.264 45.265 13072000 730550 2392700 1353200 0 0 8595800 1538 1107 1517 6875;6876;6877;6878 4624 4624 1 DSVEENMLKIQNKK Unmodified 1674.8611 0.86107026 1107 Q14527;Q14527-2 HLTF Helicase-like transcription factor yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 100.43 98.901 4 0.01434 1 67433 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.88 17.242 2815000 0 0 0 176580 0 2638400 1539 1107 1518 6879;6880 4625 4625 1 DSVMSANGKPDPDTVPDS Unmodified 1830.7942 0.79417249 22 Q7Z7H8;A6NGJ4 MRPL10 39S ribosomal protein L10, mitochondrial yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 108.49 96.914 2 0.0040591 1 64951 20150910_Q1_SA_NiHu_Masterprac_group10_C 63.614 46.362 0 0 0 0 0 0 0 1540 22 1519 6881 4626 4626 1 DSVVSLESQKTPADPKLK Unmodified 1941.0419 0.0418714 1322 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 yes yes 0 0 2 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 2 1 1 108.96 101.32 3 0.0064867 3 68970 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.339 33.372 23533000 5278800 4187300 3650400 3100200 889120 6427200 1541 1322 1520 6882;6883;6884;6885;6886;6887;6888 4627;4628;4629 4627 2 DSYSSRDYPSSR Unmodified 1418.6062 0.60623578 1379;649 Q96E39;B3KRG5;H3BUY5;H3BT71;P38159-2;P38159;H0Y6E7 RBMXL1;RBMX RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed no no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 51.734 47.02 3 0.023874 1 38774 20150910_Q1_SA_NiHu_Masterprac_group15_C 50.46 36.014 6372700 489220 776830 0 211860 1066600 3828200 1542 1379;649 1521 6889;6890;6891;6892;6893 4630 4630 1 DSYVGDEAQSK Unmodified 1197.515 0.51496116 164 F5H0N0;B4E335;P63261;P60709;I3L3I4;G5E9R0;I3L3R2;E7EVS6;I3L3I0;I3L1U9;E7EQV5;Q5T8M8;A6NL76;P68133;P68032;Q5T8M7;F5H1C1;P63267;P62736;C9JUM1;C9JZR7;C9JTX5;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;I3L4N8;B4DUI8 ACTG1;ACTB;ACTA1;ACTC1;ACTG2;ACTA2 Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 48.883 44.351 2 0.0040752 2 33233 20150910_Q1_SA_NiHu_Masterprac_group10_C 78.903 66.634 18136000 3264100 7528600 0 3358900 138970 3845000 1543 164 1522 6894;6895;6896;6897;6898 4631;4632 4632 2 DSYVGDEAQSKR Unmodified 1353.6161 0.61607219 164 F5H0N0;B4E335;P63261;P60709;I3L3I4;G5E9R0;I3L3R2;E7EVS6;I3L3I0;I3L1U9;E7EQV5;Q5T8M8;A6NL76;P68133;P68032;Q5T8M7;F5H1C1;P63267;P62736;C9JUM1;C9JZR7;C9JTX5;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;I3L4N8;B4DUI8 ACTG1;ACTB;ACTA1;ACTC1;ACTG2;ACTA2 Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 2 2 2 2 2 1 46.828 40.953 2;3 0.016998 2 30455 20150910_Q1_SA_NiHu_Masterprac_group10_C 70.089 62.045 5688400 967530 860300 965320 730760 1467800 696730 1544 164 1523 6899;6900;6901;6902;6903;6904;6905;6906;6907;6908;6909 4633;4634 4634 2 DTAASGYGTQNIR Unmodified 1352.6321 0.6320566 1642 Q9Y314 NOSIP Nitric oxide synthase-interacting protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 76.142 68.565 2 1.7752E-34 6 47741 20150910_Q1_SA_NiHu_Masterprac_group15_B 120.84 100.1 17493000 2395700 2690000 2461400 762190 2823700 6360300 1545 1642 1524 6910;6911;6912;6913;6914;6915;6916 4635;4636;4637;4638;4639;4640 4637 6 DTAASGYGTQNIRLSR Unmodified 1708.8493 0.84926002 1642 Q9Y314 NOSIP Nitric oxide synthase-interacting protein yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 103.47 95.587 3 0.002385 2 64011 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.181 38.756 23080000 0 6753600 5344200 1573000 2551600 6857800 1546 1642 1525 6917;6918;6919;6920;6921 4641;4642 4641 2 DTAASGYGTQNIRLSRDAVK Unmodified 2122.0767 0.076693777 1642 Q9Y314 NOSIP Nitric oxide synthase-interacting protein yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 105.45 97.489 3 0.0011952 2 64781 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.728 50.253 9978100 0 4747200 2704000 670570 496420 1359800 1547 1642 1526 6922;6923;6924;6925;6926 4643;4644 4644 2 DTALETALNAK Unmodified 1145.5928 0.59281755 952 P51532-5;P51532-2;P51532-3;P51532-4;P51532;Q9HBD4;F5H0X5 SMARCA4 Transcription activator BRG1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 127.8 113.78 2 0.028546 2 81361 20150910_Q1_SA_NiHu_Masterprac_group13_C 61.344 4.9394 11780000 1923900 0 3307400 0 2259600 4289300 1548 952 1527 6927;6928;6929;6930 4645;4646 4645 0 DTARGQNLLQTQDHAK Unmodified 1794.8973 0.89727285 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 67.264 60.265 3 5.7045E-27 6 47870 20150910_Q1_SA_NiHu_Masterprac_group15_C 110.97 64.654 32408000 0 9001100 4991300 1862000 5809000 10744000 1549 919;920 1528 6931;6932;6933;6934;6935 4647;4648;4649;4650;4651;4652 4651 5 DTARGQNLLQTQDHAKAPK Unmodified 2091.0821 0.082113506 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 70.611 63.284 3;4 2.3331E-26 10 51301 20150910_Q1_SA_NiHu_Masterprac_group13_C 105.99 90.546 501240000 32714000 73906000 140190000 54292000 65027000 135120000 1550 919;920 1529 6936;6937;6938;6939;6940;6941;6942;6943;6944;6945;6946;6947 4653;4654;4655;4656;4657;4658;4659;4660;4661;4662 4656 10 DTEAGETFSSVQANLSK Unmodified 1782.8272 0.82718718 896 P35251-2;P35251 RFC1 Replication factor C subunit 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 132.51 124.66 2 0 5 85051 20150910_Q1_SA_NiHu_Masterprac_group13_B 276.14 219.11 182610000 41325000 52959000 22297000 35847000 0 30188000 1551 896 1530 6948;6949;6950;6951;6952 4663;4664;4665;4666;4667 4663 5 DTFEHDPSESIDEFNK Unmodified 1908.8014 0.80136636 1563;452 Q9NYF8-2;Q9NYF8;Q9NYF8-4;E9PK09;E9PQN2;E9PKI6;E9PJA7;Q9NYF8-3;E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 128.69 119.76 2;3 0 10 81976 20150910_Q1_SA_NiHu_Masterprac_group13_C 225.21 221.78 134450000 38981000 11992000 36867000 9093800 9902300 27617000 1552 1563;452 1531 6953;6954;6955;6956;6957;6958;6959;6960;6961;6962;6963 4668;4669;4670;4671;4672;4673;4674;4675;4676;4677 4671 10 DTGDIFCTR Unmodified 1083.4655 0.46550855 1047 Q08554-2;Q08554 DSC1 Desmocollin-1 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 109.3 100.47 2 0.024935 2 66871 20150910_Q1_SA_NiHu_Masterprac_group10_B 67.113 37.369 6595400 279700 2801200 1211300 751020 544130 1008000 1553 1047 1532 6964;6965;6966;6967;6968;6969 4678;4679 4679 2 DTGKTPVEPEVAIHR Unmodified 1647.858 0.8580338 979 P60866;P60866-2;E5RJX2;E5RIP1 RPS20 40S ribosomal protein S20 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 93.437 85.903 3;4 2.7567E-147 8 58805 20150910_Q1_SA_NiHu_Masterprac_group15_B 157.35 131.37 33449000 9192500 1839700 1197800 4353600 11374000 5491000 1554 979 1533 6970;6971;6972;6973;6974;6975;6976;6977;6978;6979 4680;4681;4682;4683;4684;4685;4686;4687 4681 8 DTGKTPVEPEVAIHRIR Unmodified 1917.0432 0.043208804 979 P60866;P60866-2;E5RJX2;E5RIP1 RPS20 40S ribosomal protein S20 yes no 0 0 2 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 102.72 97.215 4 0.0018608 4 64619 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.335 45.107 18224000 0 3738800 0 2889600 6801200 4794300 1555 979 1534 6980;6981;6982;6983 4688;4689;4690;4691 4690 4 DTITFEVTVNYEGISYK Unmodified 1977.9571 0.95713872 349 E7ENC6;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-6 TTN Titin yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 79.303 71.775 3 0.0034172 1 49985 20150910_Q1_SA_NiHu_Masterprac_group10_B 48.899 13.97 4381500 427950 720720 712650 654770 890520 974850 1556 349 1535 6984;6985;6986;6987;6988;6989 4692 4692 1 DTMSTGLTGAANVAK Unmodified 1435.6977 0.69769333 1413 Q96Q06-2;Q96Q06 PLIN4 Perilipin-4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 114.87 104.82 2 0.0031844 2 69411 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.414 42.042 4696400 0 845620 643880 0 1341800 1865100 1557 1413 1536 6990;6991;6992;6993 4693;4694 4694 2 DTQSVSAIGEEK Unmodified 1262.599 0.59902514 422 E9PDD9;Q9NW13;H7C5G8;C9JAA9 RBM28 RNA-binding protein 28 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 71.612 64.433 2 0.00023449 4 45055 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.273 72.492 6271100 0 830980 955670 556690 1844700 2083100 1558 422 1537 6994;6995;6996;6997;6998 4695;4696;4697;4698 4697 4 DTRASANLRPK Unmodified 1227.6684 0.66838253 1059 Q12789-3;Q12789;H7BYG6 GTF3C1 General transcription factor 3C polypeptide 1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 40.79 31.316 3 0.018739 1 25346 20150910_Q1_SA_NiHu_Masterprac_group13_C 70.728 25.075 1311700 0 0 1311700 0 0 0 1559 1059 1538 6999 4699 4699 1 DTSIQEVVSRPSSK Unmodified 1531.7842 0.78420015 1280 Q8IWC1-2;Q8IWC1;H7BY77;Q8IWC1-3 MAP7D3 MAP7 domain-containing protein 3 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 1 1 1 97.536 88.956 2;3 0.0011283 7 60877 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.927 39.744 15198000 3080400 4444700 2102100 0 1213600 4357200 1560 1280 1539 7000;7001;7002;7003;7004;7005;7006 4700;4701;4702;4703;4704;4705;4706 4701 7 DTSKPTPGTSLFTPSEGAASK Unmodified 2078.0168 0.016778861 701 O15014 ZNF609 Zinc finger protein 609 yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 125.94 111.99 3 0.0010928 4 80184 20150910_Q1_SA_NiHu_Masterprac_group13_C 52.769 24.931 10592000 2666500 0 4965200 0 280290 2680100 1561 701 1540 7007;7008;7009;7010 4707;4708;4709;4710 4707 4 DTTSQHRAHLFDLNCK Unmodified 1941.9115 0.9115427 1447 Q9BTC0;Q9BTC0-1 DIDO1 Death-inducer obliterator 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 98.401 89.352 4 0.0097879 2 61097 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.722 34.712 10487000 0 0 3361600 1693200 2087900 3344700 1562 1447 1541 7011;7012;7013;7014 4711;4712 4711 2 DTTSQHRQHLFDLNCK Unmodified 1998.933 0.93300643 1353 Q92576-2;Q92576;E7EVH3;E7ER40 PHF3 PHD finger protein 3 yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 91.665 85.566 4 0.0056664 3 63312 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.216 39.37 28493000 0 0 0 10966000 5169300 12358000 1563 1353 1542 7015;7016;7017 4713;4714;4715 4715 3 DTVCSGVTGAANVAK Unmodified 1448.6929 0.6929423 1413 Q96Q06-2;Q96Q06 PLIN4 Perilipin-4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 90.409 85.282 2 0.0078274 1 58071 20150910_Q1_SA_NiHu_Masterprac_group10_B 49.265 32.13 11902000 0 3401900 0 756800 3359200 4383900 1564 1413 1543 7018;7019;7020;7021 4716 4716 1 DTVCSGVTGAVNVAK Unmodified 1476.7242 0.72424243 1413 Q96Q06-2;Q96Q06 PLIN4 Perilipin-4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 109.82 102.26 2 0.008098 1 67805 20150910_Q1_SA_NiHu_Masterprac_group10_B 48.899 38.179 3864400 0 1208400 721820 0 0 1934200 1565 1413 1544 7022;7023;7024 4717 4717 1 DTVCSGVTSAVNVAK Unmodified 1506.7348 0.73480712 1413 Q96Q06-2;Q96Q06 PLIN4 Perilipin-4 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 118.39 107.88 2 0.0024349 1 74009 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.884 37.941 1593700 0 0 0 0 312040 1281600 1566 1413 1545 7025;7026 4718 4718 1 DVACGANHTLVLDSQK Unmodified 1726.8308 0.83083277 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 2 1 103.06 93.181 2;3 7.2297E-05 8 62713 20150910_Q1_SA_NiHu_Masterprac_group13_B 86.777 60.245 46267000 8051900 16910000 5358500 0 4719400 11227000 1567 1575 1546 7027;7028;7029;7030;7031;7032;7033;7034;7035 4719;4720;4721;4722;4723;4724;4725;4726 4719 8 DVACGANHTLVLDSQKR Unmodified 1882.9319 0.93194379 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 89.415 83.45 3 0.0010604 4 56675 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.546 45.976 8210100 1665700 2663800 1189600 1139000 0 1551900 1568 1575 1547 7036;7037;7038;7039;7040 4727;4728;4729;4730 4729 3 DVASEVNLTAYKPK Unmodified 1533.8039 0.80387296 1490 Q9H501 ESF1 ESF1 homolog yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 129.53 128.92 3 0.0011633 1 82459 20150910_Q1_SA_NiHu_Masterprac_group10_B 77.776 48.964 4551000 0 4551000 0 0 0 0 1569 1490 1548 7041 4731 4731 1 DVDHRRDDPYWSENK Unmodified 1930.8558 0.85580196 1554 Q9NWH9;H7C3F4;A8K5V8 SLTM SAFB-like transcription modulator yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 68.242 61.203 4 0.0040713 1 42799 20150910_Q1_SA_NiHu_Masterprac_group13_B 53.946 34.659 5971800 0 303340 876390 754590 2067400 1970100 1570 1554 1549 7042;7043;7044;7045;7046 4732 4732 1 DVDYSDALTEK Unmodified 1254.5616 0.561577 951 P51531-2;P51531 SMARCA2 Probable global transcription activator SNF2L2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 111.67 102.5 2 0.0060017 2 69642 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.728 57.771 7127100 612600 1808300 881740 0 0 3824400 1571 951 1550 7047;7048;7049;7050 4733;4734 4733 2 DVEDMFSR Unmodified 997.4175 0.41749572 1146 Q15717 ELAVL1 ELAV-like protein 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 120.51 118.13 2 0.00148 1 80302 20150910_Q1_SA_NiHu_Masterprac_group15_B 111.74 83.857 6767900 0 0 0 941140 0 5826800 1572 1146 1551 7051;7052 4735 4735 1 DVEEEKFPTQLSR Unmodified 1576.7733 0.77330111 167 B4E3L0;Q2TAY7 SMU1 WD40 repeat-containing protein SMU1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 120.33 108.13 3 0.0022757 2 73902 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.463 48.936 5413300 833110 0 0 0 1659400 2920800 1573 167 1552 7053;7054;7055 4736;4737 4736 2 DVESVQTPSK Unmodified 1088.535 0.53496832 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 57.677 50.282 2 0.0087186 1 35878 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.659 59.628 2220000 0 0 0 0 613950 1606100 1574 919 1553 7056;7057 4738 4738 1 DVETTSSVSVK Unmodified 1150.5717 0.57174776 535 Q96RL1;F8VQY2;Q96RL1-2;D6RC40;D6RCQ3;D6RCF3;Q96RL1-5;D6RDZ5;D6R9M3 UIMC1 BRCA1-A complex subunit RAP80 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 63.807 60.796 2 0.014605 1 42845 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.819 42.075 0 0 0 0 0 0 0 1575 535 1554 7058 4739 4739 1 DVIEEYFKCKK Unmodified 1457.7225 0.72245152 875 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 2 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 125.71 120.27 3 4.6582E-08 2 77124 20150910_Q1_SA_NiHu_Masterprac_group10_C 112.3 77.794 17795000 13687000 1847400 0 2260600 0 0 1576 875 1555 7059;7060;7061 4740;4741 4741 2 DVILYEK Unmodified 878.47493 0.47493425 295 CON__P06868 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 2 1 1 2 1 99.39 91.104 2 0.026083 2 61694 20150910_Q1_SA_NiHu_Masterprac_group10_B 86.794 20.991 11778000 4086400 1246500 0 1232400 3401900 1810900 + 1577 295 1556 7062;7063;7064;7065;7066;7067;7068 4742;4743 4742 2 DVLTGQEFDVRAK Unmodified 1476.7573 0.75725712 918 P43304;F5GYK7;P43304-2;F8W6E4 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 119.77 117.94 3 0.0096279 2 75924 20150910_Q1_SA_NiHu_Masterprac_group13_B 56.139 43.376 2499700 0 808140 0 778680 0 912850 1578 918 1557 7069;7070;7071 4744;4745 4744 2 DVMEGVTVDDHMMK Unmodified 1605.6837 0.68369952 1177 Q5BKZ1;Q5BKZ1-3 ZNF326 DBIRD complex subunit ZNF326 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 130.72 125.29 2 2.1667E-30 4 82573 20150910_Q1_SA_NiHu_Masterprac_group13_C 113.52 95.737 4423300 2648300 955230 0 819780 0 0 1579 1177 1558 7072;7073;7074;7075 4746;4747;4748;4749 4747 4 DVNAAIAAIKTK Unmodified 1213.703 0.7030367 44 A8MUB1;P68366 TUBA4A Tubulin alpha-4A chain yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 120.74 113.99 2 0.009346 2 75529 20150910_Q1_SA_NiHu_Masterprac_group10_C 68.972 49.314 6032200 3809000 0 0 492120 0 1731100 1580 44 1559 7076;7077;7078 4750;4751 4751 2 DVNAAIATIK Unmodified 1014.571 0.5709599 518 G3V1U9;Q9BQE3;Q71U36;P68363;F5H5D3;F8VXZ4;Q6PEY2;Q13748;E9PGK3;Q13748-2 TUBA1A;TUBA1C;TUBA1B;TUBA3E;TUBA3C Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-3E chain;Tubulin alpha-3C/D chain yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 118.47 110.6 2 0.0027222 3 72580 20150910_Q1_SA_NiHu_Masterprac_group10_B 98.754 69.593 14723000 1239100 3876200 1804200 705130 0 7098800 1581 518 1560 7079;7080;7081;7082;7083 4752;4753;4754 4753 3 DVNAAIATIKTK Unmodified 1243.7136 0.71360139 518 G3V1U9;Q9BQE3;Q71U36;P68363;F5H5D3;F8VXZ4;Q6PEY2;Q13748;E9PGK3;Q13748-2 TUBA1A;TUBA1C;TUBA1B;TUBA3E;TUBA3C Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-3E chain;Tubulin alpha-3C/D chain yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 4 4 3 111.71 103.09 2;3 7.0711E-97 9 68096 20150910_Q1_SA_NiHu_Masterprac_group10_B 149.82 106.98 187690000 16886000 38828000 20199000 16866000 35567000 59340000 1582 518 1561 7084;7085;7086;7087;7088;7089;7090;7091;7092;7093;7094;7095;7096;7097;7098;7099;7100 4755;4756;4757;4758;4759;4760;4761;4762;4763 4762 9 DVNAAIATIKTKR Unmodified 1399.8147 0.81471242 518 G3V1U9;Q9BQE3;Q71U36;P68363;F5H5D3;F8VXZ4;Q6PEY2;Q13748;E9PGK3;Q13748-2 TUBA1A;TUBA1C;TUBA1B;TUBA3E;TUBA3C Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-3E chain;Tubulin alpha-3C/D chain yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 105.39 95.311 3 0.0069675 4 65015 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.628 41.413 10885000 1159700 3321400 1277800 0 1335600 3790600 1583 518 1562 7101;7102;7103;7104;7105 4764;4765;4766;4767 4765 4 DVNEGETSDGVRK Unmodified 1404.6481 0.6481006 1656 Q9Y5Q9-2;Q9Y5Q9 GTF3C3 General transcription factor 3C polypeptide 3 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 37.08 31.289 3 0.0042019 1 25100 20150910_Q1_SA_NiHu_Masterprac_group13_C 57.52 32.178 1429600 0 619960 809640 0 0 0 1584 1656 1563 7106;7107 4768 4768 1 DVNPGGKEETPGQRPAVTETHQLAELNEK Unmodified 3143.5483 0.54833356 1623 Q9UQ35;Q9UQ35-2;I3L2L6;I3L182;Q9UQ39;I3L4D8;I3L1C0;I3L1I8;Q9UQ35-3 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 2 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 104.73 103.07 4 0.00010836 3 70641 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.184 30.738 5442300 0 1811300 0 1139600 0 2491400 1585 1623 1564 7108;7109;7110 4769;4770;4771 4770 3 DVQTALALAK Unmodified 1028.5866 0.58660996 1181 Q5H928;Q99714-2;Q99714 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 131.68 113.94 2 0.01037 1 80781 20150910_Q1_SA_NiHu_Masterprac_group15_C 73.499 35.196 1740100 0 0 0 0 1740100 0 1586 1181 1565 7111 4772 4772 1 DVQTALALAKGK Unmodified 1213.703 0.7030367 1181 Q5H928;Q99714-2;Q99714 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 2 120.7 111.19 2;3 9.1227E-07 4 75962 20150910_Q1_SA_NiHu_Masterprac_group15_B 102.33 73.755 21624000 4604600 0 7237400 3715800 0 6066100 1587 1181 1566 7112;7113;7114;7115;7116 4773;4774;4775;4776 4775 4 DVRQSLSPMSQRPVLK Unmodified 1839.9989 0.99890115 54 Q9NSV4-6;A8MYX0;Q9NSV4-5;C9JL55;Q9NSV4-4;C9JDG1;Q9NSV4;C9JDG0;Q9NSV4-1;A6NG52;Q9NSV4-7 DIAPH3 Protein diaphanous homolog 3 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 116.01 111.65 3 0.019432 1 76209 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.639 30.386 1810800 0 0 0 0 0 1810800 1588 54 1567 7117 4777 4777 1 DVRWPTETDVSSAK Unmodified 1589.7686 0.76855009 388 E7EVA0;P27816-6;P27816;P27816-2 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 115.83 110.1 3 1.4202E-20 3 75649 20150910_Q1_SA_NiHu_Masterprac_group15_B 112.02 81.024 8483300 0 1732500 0 1738200 2542100 2470500 1589 388 1568 7118;7119;7120;7121 4778;4779;4780 4778 3 DVSGLRDVK Unmodified 987.53491 0.53490874 1471 Q9BZE4;B7Z7A3;B4DY13 GTPBP4 Nucleolar GTP-binding protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 63.506 56.863 2 0.019606 1 40276 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.495 32.819 5246200 1025400 945700 0 0 1047000 2228200 1590 1471 1569 7122;7123;7124;7125 4781 4781 1 DVSHEIIQHEVK Unmodified 1432.731 0.73104237 1255 Q7Z6E9;Q7Z6E9-2;Q7Z6E9-4 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 95.66 87.453 3 9.8552E-05 5 60054 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.182 77.123 10902000 2547600 1675500 1184800 968580 1996000 2529600 1591 1255 1570 7126;7127;7128;7129;7130;7131;7132 4782;4783;4784;4785;4786 4783 5 DVSQSSIYSQTEEK Unmodified 1599.7264 0.7264105 790 P04279 SEMG1 Semenogelin-1;Alpha-inhibin-92;Alpha-inhibin-31;Seminal basic protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 98.531 82.188 2 0.0023694 1 61191 20150910_Q1_SA_NiHu_Masterprac_group15_C 64.104 50.313 2248100 0 0 0 0 2248100 0 1592 790 1571 7133 4787 4787 1 DVSQSSIYSQTEEKAQGK Unmodified 1983.9385 0.93852854 790 P04279 SEMG1 Semenogelin-1;Alpha-inhibin-92;Alpha-inhibin-31;Seminal basic protein yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 106.86 90.018 3 0.018052 1 66218 20150910_Q1_SA_NiHu_Masterprac_group15_C 39.338 12.501 1078500 0 0 0 0 1078500 0 1593 790 1572 7134 4788 4788 1 DVTDKPLDLSSK Unmodified 1316.6824 0.68236084 1237 Q6W2J9;Q6W2J9-4;Q6W2J9-2;H7BYY2;Q6W2J9-3 BCOR BCL-6 corepressor yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 68.566 65.556 3 0.036448 1 45922 20150910_Q1_SA_NiHu_Masterprac_group10_B 45.764 25.449 2639400 0 2639400 0 0 0 0 1594 1237 1573 7135 4789 4789 1 DVVICPDASLEDAK Unmodified 1530.7236 0.72357373 1425 Q99497 PARK7 Protein DJ-1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.53 130.93 2 0.01223 1 84394 20150910_Q1_SA_NiHu_Masterprac_group10_B 49.298 20.865 10102000 0 10102000 0 0 0 0 1595 1425 1574 7136 4790 4790 1 DVYLSPRDDGYSTK Unmodified 1614.7526 0.75256567 1379;649 Q96E39;B3KRG5;H3BUY5;H3BT71;P38159-2;P38159;H0Y6E7 RBMXL1;RBMX RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed no no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 99.958 92.297 3 0.0041189 2 62221 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.32 41.179 11901000 0 1536200 1133400 624290 4513700 4093500 1596 1379;649 1575 7137;7138;7139;7140;7141 4791;4792 4792 2 DWANQRCSSPK Unmodified 1347.599 0.59898234 904 P38432 COIL Coilin yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 50.643 45.016 3 0.013034 1 32273 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.593 45.63 1670700 369570 563850 100450 0 0 636800 1597 904 1576 7142;7143;7144;7145 4793 4793 1 DYAFIHFDERDGAVK Unmodified 1781.8373 0.83729835 731 O60506-2;O60506;O60506-4;O60506-3;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 132.93 132.93 3 0.00055069 1 85987 20150910_Q1_SA_NiHu_Masterprac_group13_B 83.243 61.994 16304000 0 0 0 16304000 0 0 1598 731 1577 7146 4794 4794 1 DYAFVHFEDRGAAVK Unmodified 1723.8318 0.83181904 715 O43390;O43390-2;E7ETM7;Q2L7G6 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 131.86 114.11 3 0.00086017 1 80933 20150910_Q1_SA_NiHu_Masterprac_group15_C 77.204 40.573 6053600 0 0 0 0 6053600 0 1599 715 1578 7147 4795 4795 1 DYAFVHMER Unmodified 1166.5179 0.51787847 1457 Q9BWF3;E9PB51;Q9BQ04;E7EQS3;Q9BWF3-3;D6R9K7;Q9BWF3-2;E9PLB0;E9PM61 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 122.14 112.67 2 0.011235 3 80595 20150910_Q1_SA_NiHu_Masterprac_group13_C 83.499 69.038 17631000 1793500 1556600 5703800 1043000 2606300 4927600 1600 1457 1579 7148;7149;7150;7151;7152;7153 4796;4797;4798 4796 3 DYDDMSPR Unmodified 997.38111 0.38111022 984 P61978-3;P61978-2;B4DFF1;P61978;Q5T6W5;Q5T6W2;Q5T6W1 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 65.259 60.408 2 0.0063494 2 42411 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.741 92.349 11441000 0 1739800 0 622910 1987400 7091100 1601 984 1580 7154;7155;7156;7157 4799;4800 4799 2 DYGNSPLHR Unmodified 1057.4941 0.49410656 882 P26599;P26599-2;P26599-3;A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 59.306 52.73 2 0.0061685 5 38576 20150910_Q1_SA_NiHu_Masterprac_group10_B 93.178 38.402 83964000 2001200 9131200 8594100 4254500 15737000 44246000 1602 882 1581 7158;7159;7160;7161;7162;7163 4801;4802;4803;4804;4805 4804 5 DYHFKVDNDENEHQLSLR Unmodified 2258.0352 0.035222893 801 P06748-2;P06748;P06748-3;E5RGW4 NPM1 Nucleophosmin yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 114.72 112.86 4 0.011286 1 77005 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.367 24.518 7726000 0 2288900 0 940510 0 4496600 1603 801 1582 7164;7165;7166 4806 4806 1 DYIQKHPELNISEEGITK Unmodified 2113.0691 0.069148783 455 E9PKP7;P17480-2;P17480 UBTF Nucleolar transcription factor 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 129.45 129.14 3 0.0018893 1 82472 20150910_Q1_SA_NiHu_Masterprac_group10_B 54.355 33.916 15333000 0 14188000 0 1144900 0 0 1604 455 1583 7167;7168 4807 4807 1 DYKLVGDQEDHGSAK Unmodified 1660.7693 0.76927837 710 O43167;O43167-2 ZBTB24 Zinc finger and BTB domain-containing protein 24 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 66.095 59.001 3 0.0091032 2 47942 20150910_Q1_SA_NiHu_Masterprac_group13_C 47.774 36.269 5121100 669460 642960 884930 904260 1161700 857760 1605 710 1584 7169;7170;7171;7172;7173;7174 4808;4809 4808 2 DYLPVGQRMPGTR Unmodified 1488.7507 0.75073195 739 O75319;O75319-2;C9JGC8;C9JYA6;H7C0E6 DUSP11 RNA/RNP complex-1-interacting phosphatase yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 115.35 113.07 3 0.019523 1 77204 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.081 33.981 3212800 0 0 0 562510 0 2650300 1606 739 1585 7175;7176 4810 4810 1 DYRQSSGASSSSFSSSR Unmodified 1794.7769 0.77688294 693 O00571;O00571-2;B4DLU5 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 2 60.619 54.459 3 5.5902E-08 7 44770 20150910_Q1_SA_NiHu_Masterprac_group13_C 93.342 80.85 62554000 7223400 7033300 7239700 6898500 11224000 22935000 1607 693 1586 7177;7178;7179;7180;7181;7182;7183;7184 4811;4812;4813;4814;4815;4816;4817 4812 7 DYRQSSGASSSSFSSSRASSSR Unmodified 2283.0112 0.011192987 693 O00571;O00571-2;B4DLU5 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 59.813 52.463 4 2.6698E-06 6 43203 20150910_Q1_SA_NiHu_Masterprac_group13_C 64.26 54.044 8798400 1645600 0 1949300 1765800 1977800 1460000 1608 693 1587 7185;7186;7187;7188;7189 4818;4819;4820;4821;4822;4823 4820 6 DYYNPQPYPSYEGGAGTPSGTAAAVAADKYHRGSK Unmodified 3645.6761 0.67605327 39 Q7Z5J4-3;E7EVZ3;Q7Z5J4;A8MTC3;Q7Z5J4-2;C9JWB0;A8MXE8;Q7Z5J4-4;E7ETW1 RAI1 Retinoic acid-induced protein 1 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 130.27 120.35 4;5 1.822E-62 12 81139 20150910_Q1_SA_NiHu_Masterprac_group13_C 94.891 87.903 198920000 31962000 15902000 52011000 28744000 40210000 30097000 1609 39 1588 7190;7191;7192;7193;7194;7195;7196;7197;7198;7199;7200 4824;4825;4826;4827;4828;4829;4830;4831;4832;4833;4834;4835 4825 12 EAAACTSALCCMGR Unmodified 1556.6204 0.62038776 482 F8VW22;F5GWB8;Q9Y6K5 OAS3 2'-5'-oligoadenylate synthase 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 105.46 95.383 2 0.0019522 1 65194 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.215 48.12 1978800 0 0 393540 0 0 1585300 1610 482 1589 7201;7202 4836 4836 1 EAACESSTPSWASDHNYNAVKPEK Unmodified 2677.1715 0.17145838 1447 Q9BTC0;Q9BTC0-1;Q9BTC0-2;Q9BTC0-3 DIDO1 Death-inducer obliterator 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 107.69 96.828 4 3.9061E-09 9 64499 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.915 57.38 77320000 21769000 16115000 20982000 0 7386800 11067000 1611 1447 1590 7203;7204;7205;7206;7207;7208 4837;4838;4839;4840;4841;4842;4843;4844;4845 4844 9 EAACFKARPNTVISQEPFVPK Unmodified 2388.226 0.22600055 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 2 1 1 131.66 122.57 3;4 4.5824E-74 7 86570 20150910_Q1_SA_NiHu_Masterprac_group15_B 124.04 102.28 169230000 87548000 20313000 8373400 26683000 1791400 24520000 1612 1611 1591 7209;7210;7211;7212;7213;7214;7215;7216 4846;4847;4848;4849;4850;4851;4852 4848 7 EAAENSLVAYK Unmodified 1193.5928 0.59281755 987 P62258-2;P62258 YWHAE 14-3-3 protein epsilon yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 89.487 87.405 2 0.013623 1 59306 20150910_Q1_SA_NiHu_Masterprac_group10_B 60.598 37.506 2277200 0 1264200 0 0 0 1013000 1613 987 1592 7217;7218 4853 4853 1 EAAEQAERSQSSIVPEEEQAANKGEEK Unmodified 2943.3694 0.36936614 85 C0IMW5;B4DFR4;Q969G3-2;B4DGM3;Q969G3;H7C048;H7BXG8;H7C3F6 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 0 0 2 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 90.535 82.839 4 0.012868 2 61695 20150910_Q1_SA_NiHu_Masterprac_group15_C 32.368 20.771 12690000 2386300 2013200 2529100 1953400 1706800 2101400 1614 85 1593 7219;7220;7221;7222;7223;7224 4854;4855 4854 2 EAAFDDAVEER Unmodified 1250.5415 0.54151026 1051 Q09028-3;Q09028;E9PNS2;E9PIC4;E9PNS6 RBBP4 Histone-binding protein RBBP4 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 1 1 97.721 89.456 2 0.0035879 4 61362 20150910_Q1_SA_NiHu_Masterprac_group10_C 81.709 65.331 147230000 4183300 42109000 25396000 1841400 6103500 67599000 1615 1051 1594 7225;7226;7227;7228;7229;7230;7231 4856;4857;4858;4859 4859 4 EAAFDDAVEERVINEEYK Unmodified 2125.9804 0.98039336 1051 Q09028-3;Q09028;E9PNS2;E9PIC4;E9PNS6 RBBP4 Histone-binding protein RBBP4 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 132.97 130.92 2;3 6.6766E-20 3 88339 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.236 58.732 237320000 0 146860000 0 0 0 90463000 1616 1051 1595 7232;7233;7234 4860;4861;4862 4860 1 EAAGEGPALYEDPPDQK Unmodified 1785.8057 0.80572345 584 G3V3C7;G3V5Q1;G3V3M6;P27695;G3V5D9;G3V5M0;G3V359;G3V3Y6 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 107.03 97.143 2 0.0042082 3 65662 20150910_Q1_SA_NiHu_Masterprac_group10_C 48.623 33.832 9145900 2553200 1763900 823820 2271200 1733800 0 1617 584 1596 7235;7236;7237;7238;7239 4863;4864;4865 4865 3 EAAGPAPSPMR Unmodified 1082.5179 0.51787847 157 B4E1H5;Q12834 CDC20 Cell division cycle protein 20 homolog yes no 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 64.232 57.414 2 0.0092847 4 40636 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.842 33.971 13547000 0 1748500 1683400 1250200 2288200 6577100 1618 157 1597 7240;7241;7242;7243;7244 4866;4867;4868;4869 4869 4 EAAGSVRTEEVESR Unmodified 1518.7274 0.72741355 1191 Q5T3I0;Q5T3I0-3;E9PAV9 GPATCH4 G patch domain-containing protein 4 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 1 1 53.766 46.747 3 0.0014211 5 33509 20150910_Q1_SA_NiHu_Masterprac_group10_B 81.278 63.691 40742000 5038100 4697800 7018400 4031500 8879800 11076000 1619 1191 1598 7245;7246;7247;7248;7249;7250;7251 4870;4871;4872;4873;4874 4873 5 EAAGTMTLSQFQTLHEK Unmodified 1890.9146 0.9145624 1398 Q96IZ5-2;Q96IZ5;H0Y6F9;H7BY88;Q96IZ5-3 RBM41 RNA-binding protein 41 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 132.2 127.24 3 0.00063247 1 87123 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.751 56.926 0 0 0 0 0 0 0 1620 1398 1599 7252 4875 4875 1 EAALAEVADEK Unmodified 1144.5612 0.56118307 156 H7C415;B4E189;E9PHA2;Q15003 NCAPH Condensin complex subunit 2 yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 96.23 88.251 2 2.9028E-05 3 60357 20150910_Q1_SA_NiHu_Masterprac_group15_B 103.21 74.982 6843900 709690 1327400 1288400 692590 817650 2008100 1621 156 1600 7253;7254;7255;7256;7257;7258 4876;4877;4878 4877 3 EAALSTALSEK Unmodified 1118.5819 0.58191851 783 P02545;P02545-3;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q3BDU5;Q5TCJ4;Q5TCI8;H0YAB0 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 2 1 1 1 102.07 93.531 2 0.0027179 2 62770 20150910_Q1_SA_NiHu_Masterprac_group10_B 86.114 57.317 17694000 3973400 7071000 1629100 0 0 5020900 1622 783 1601 7259;7260;7261;7262;7263 4879;4880 4879 2 EAALVQQEEEK Unmodified 1272.6198 0.61976058 206 B7ZKM0;Q15020;F5H0B8;F8VV04;E7EMI4 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 62.855 58.81 2 0.0057163 1 42919 20150910_Q1_SA_NiHu_Masterprac_group10_C 71.153 33.597 1955700 359830 452050 0 0 0 1143800 1623 206 1602 7264;7265;7266 4881 4881 1 EAASFCEMCPSSFCK Unmodified 1809.683 0.6830476 1404 Q96L73-2;Q96L73-3;Q96L73 NSD1 Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.93 131.33 2 0.00034482 1 84818 20150910_Q1_SA_NiHu_Masterprac_group10_B 85.493 71.628 5462000 0 5462000 0 0 0 0 1624 1404 1603 7267 4882 4882 1 EAATLEVERPLPMEVEK Unmodified 1939.9925 0.99247837 954 P51858;A8K8G0;Q5SZ08;Q5SZ07;B7Z525 HDGF Hepatoma-derived growth factor yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 133.11 122.68 3 1.0134E-109 5 85421 20150910_Q1_SA_NiHu_Masterprac_group13_B 137.73 121.2 326920000 58258000 80158000 130410000 56835000 1265400 0 1625 954 1604 7268;7269;7270;7271;7272;7273 4883;4884;4885;4886;4887 4883 5 EAATLEVERPLPMEVEK Oxidation (M) 1955.9874 0.98739299 954 P51858;A8K8G0;Q5SZ08;Q5SZ07;B7Z525 HDGF Hepatoma-derived growth factor yes no 0 1 1 By matching By matching By MS/MS By matching By matching By matching 1 1 130.63 112.76 3 0.032438 1 81479 20150910_Q1_SA_NiHu_Masterprac_group13_C 56.29 35.324 7985000 0 0 7142400 0 842550 0 1626 954 1604 7274;7275 4888 4888 112 1 EAATSELQSIQR Unmodified 1331.6681 0.66810776 251 O15119-3;C9JIZ8;O15119-2;O15119 TBX3 T-box transcription factor TBX3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 95.989 93.632 2 0.020933 1 63941 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.273 41.987 1259800 0 0 0 0 0 1259800 1627 251 1605 7276 4889 4889 0 EACFAVEGPK Unmodified 1106.5066 0.50664508 294 CON__P02769 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 95.197 87.617 2 0.0031849 4 59916 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.827 62.618 26442000 0 6465800 2483600 1758100 4708700 11025000 + 1628 294 1606 7277;7278;7279;7280;7281 4890;4891;4892;4893 4891 4 EADDDEEVDDNIPEMPSPK Unmodified 2143.8739 0.87393895 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.56 130.96 2 0.013029 1 84408 20150910_Q1_SA_NiHu_Masterprac_group10_B 40.047 32.311 2904500 0 2904500 0 0 0 0 1629 487 1607 7282 4894 4894 1 EADLDVATITK Unmodified 1174.6081 0.60813326 975 P57740;B4DZ67 NUP107 Nuclear pore complex protein Nup107 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 116 113.22 2 0.0073808 1 73824 20150910_Q1_SA_NiHu_Masterprac_group10_B 68.676 38.908 3124500 0 729950 0 0 0 2394500 1630 975 1608 7283;7284 4895 4895 1 EADTDVQVCPNYSIPQK Unmodified 1962.8993 0.89930626 1248 Q7Z2T5;Q7Z2T5-2 TRMT1L TRMT1-like protein yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 127.37 116.01 2 1.1719E-240 4 79497 20150910_Q1_SA_NiHu_Masterprac_group15_C 172.57 139.87 24495000 6171600 936140 6557600 0 6763400 4066000 1631 1248 1609 7285;7286;7287;7288;7289 4896;4897;4898;4899 4898 4 EAEEEELEIPPQYQAGGSGIHRPVAK Unmodified 2833.3883 0.38825109 414 Q5JTH9-2;E9PCK7;Q5JTH9;F5H456 RRP12 RRP12-like protein yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 2 130.72 123.19 3;4 1.6521E-79 9 83044 20150910_Q1_SA_NiHu_Masterprac_group10_B 114.37 94.377 110600000 39438000 25037000 0 4759700 8825700 32544000 1632 414 1610 7290;7291;7292;7293;7294;7295;7296;7297 4900;4901;4902;4903;4904;4905;4906;4907;4908 4906 9 EAEEGCPEKESEEGCPK Unmodified 1963.7775 0.77753615 720 O43719;E9PFP2 HTATSF1 HIV Tat-specific factor 1 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 45.91 39.944 3 0.0014444 2 32509 20150910_Q1_SA_NiHu_Masterprac_group13_C 80.387 79.026 4287500 0 0 1498000 711690 1084300 993530 1633 720 1611 7298;7299;7300;7301 4909;4910 4910 2 EAEQMGNELER Unmodified 1304.5667 0.56667916 1121 Q14980-2;Q14980 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 2 1 77.137 70.402 2 0.0019111 3 54237 20150910_Q1_SA_NiHu_Masterprac_group15_C 89.561 56.521 3051300 0 1145100 0 0 162250 1744000 1634 1121 1612 7302;7303;7304;7305 4911;4912;4913 4912 3 EAEQTCRHLTAQVR Unmodified 1697.8268 0.82675044 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;Q9BTE9;H0YH75 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 1 58.16 50.026 3;4 0.00048154 6 41240 20150910_Q1_SA_NiHu_Masterprac_group13_C 87.719 70.579 42468000 4195500 6520500 9916300 4580300 9342000 7913200 1635 1121 1613 7306;7307;7308;7309;7310;7311;7312;7313 4914;4915;4916;4917;4918;4919 4915 6 EAERLAHEDAECEK Unmodified 1685.7315 0.73151265 1589 Q9UG63;C9JHK9;C9JZV3 ABCF2 ATP-binding cassette sub-family F member 2 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 40.782 35.743 3 0.0014211 3 25064 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.278 66.281 5246500 834520 703260 770040 616370 1088100 1234200 1636 1589 1614 7314;7315;7316;7317;7318;7319 4920;4921;4922 4921 3 EAEYEESVAK Unmodified 1153.5139 0.51389853 1617 Q9UNX4 WDR3 WD repeat-containing protein 3 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 58.953 53.004 2 0.0084895 1 37922 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.417 37.992 1601600 0 661670 135810 0 0 804160 1637 1617 1615 7320;7321;7322 4923 4923 1 EAFATAFSK Unmodified 970.476 0.47599688 778 O96006;C9JXP4 ZBED1 Zinc finger BED domain-containing protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 105.33 102.84 2 0.014866 1 70055 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.192 41.896 6260300 0 1531300 0 0 0 4729000 1638 778 1616 7323;7324 4924 4924 1 EAFISEEEIAK Unmodified 1264.6187 0.61869795 1399 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 126.26 118.02 2 3.7715E-05 5 82184 20150910_Q1_SA_NiHu_Masterprac_group13_C 102.05 65.519 23097000 0 4296900 11081000 1546900 2578600 3594100 1639 1399 1617 7325;7326;7327;7328;7329 4925;4926;4927;4928;4929 4926 5 EAFQLFDRTGDGK Unmodified 1482.7103 0.71030693 552 F8W1R7;P60660-2;P60660;G3V1V0;F8VZV5;G8JLA2;B7Z6Z4 MYL6 Myosin light polypeptide 6 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 130.02 129.41 3 0.0045635 1 82788 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.088 41.658 3566600 0 3566600 0 0 0 0 1640 552 1618 7330 4930 4930 1 EAFVTSAYK Unmodified 1014.5022 0.50221163 526 F5H727;Q9H0G5;H7BYM1 NSRP1 Nuclear speckle splicing regulatory protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 96.603 87.253 2 0.032422 1 59834 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.426 30.428 1720000 0 0 0 0 711130 1008900 1641 526 1619 7331;7332 4931 4931 1 EAFVTSAYKK Unmodified 1142.5972 0.59717465 526 F5H727;Q9H0G5;H7BYM1 NSRP1 Nuclear speckle splicing regulatory protein 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 76.073 67.575 2 0.013276 2 47189 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.788 71.706 6573600 0 0 0 0 3044400 3529200 1642 526 1620 7333;7334 4932;4933 4932 2 EAGAGGLAIAVEGPSK Unmodified 1425.7464 0.74635808 860 Q5HY54;P21333-2;P21333;E9PHF0;H0Y5C6 FLNA Filamin-A yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 126.13 123.34 2 0.014706 1 78993 20150910_Q1_SA_NiHu_Masterprac_group10_B 42.708 20.765 1724500 0 925460 0 0 0 798990 1643 860 1621 7335;7336 4934 4934 1 EAGDVCYADVQK Unmodified 1353.5871 0.58708025 623 H0YIB4;Q13242 SRSF9 Serine/arginine-rich splicing factor 9 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 80.655 73.275 2 0.0018172 4 57446 20150910_Q1_SA_NiHu_Masterprac_group13_C 81.676 47.932 4934000 0 906120 775620 415780 939900 1896500 1644 623 1622 7337;7338;7339;7340;7341 4935;4936;4937;4938 4935 4 EAGEGGEAEAPAAEGGK Unmodified 1528.6641 0.66414459 886 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 46.974 41.599 2 0.0003962 4 29829 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.781 62.586 2727500 0 538540 739800 190970 429570 828630 1645 886 1623 7342;7343;7344;7345;7346 4939;4940;4941;4942 4942 4 EAGTDNRNIVDDGK Unmodified 1502.6961 0.69611342 1597 Q9UJA5;Q9UJA5-3;Q9UJA5-2 TRMT6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 48.906 43.216 3 0.0018381 2 31008 20150910_Q1_SA_NiHu_Masterprac_group10_B 67.118 51.573 5226200 640260 688470 1161000 545720 918110 1272600 1646 1597 1624 7347;7348;7349;7350;7351;7352 4943;4944 4944 2 EAHEPLAVADAK Unmodified 1249.6303 0.63026569 1640 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 1 1 2 2 72.96 65.171 2;3 1.5595E-18 10 45344 20150910_Q1_SA_NiHu_Masterprac_group10_C 117.09 70.739 79178000 18691000 5561000 5672200 7328200 23892000 18034000 1647 1640 1625 7353;7354;7355;7356;7357;7358;7359;7360;7361;7362;7363;7364 4945;4946;4947;4948;4949;4950;4951;4952;4953;4954 4952 10 EAHLPVIENK Unmodified 1148.619 0.61897272 295 CON__P06868 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 98.819 86.921 2 0.027035 1 59615 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.592 33.716 2563800 0 0 300290 0 697050 1566400 + 1648 295 1626 7365;7366;7367 4955 4955 1 EAHLPVIENKVCNRNEYLDGR Unmodified 2525.2445 0.24450416 295 CON__P06868 yes yes 0 0 2 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 129.7 111.83 4 2.5943E-05 2 78756 20150910_Q1_SA_NiHu_Masterprac_group15_C 60.542 48.004 12341000 0 0 6308600 0 6032100 0 + 1649 295 1627 7368;7369 4956;4957 4957 2 EAHLTPYSLQAIK Unmodified 1469.7878 0.78782897 896 P35251-2;P35251;H0Y9P8 RFC1 Replication factor C subunit 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1 1 131.46 123.23 3 0 6 86462 20150910_Q1_SA_NiHu_Masterprac_group15_B 190.78 139.06 95634000 19032000 35115000 10630000 6910400 5874000 18071000 1650 896 1628 7370;7371;7372;7373;7374;7375;7376 4958;4959;4960;4961;4962;4963 4959 5 EAIEGTYIDK Unmodified 1137.5554 0.55536941 989 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 95.354 87.194 2 1.8455E-15 5 60023 20150910_Q1_SA_NiHu_Masterprac_group10_C 123.11 70.396 64734000 11173000 6296500 6704800 5881800 19806000 14871000 1651 989 1629 7377;7378;7379;7380;7381;7382;7383 4964;4965;4966;4967;4968 4968 5 EAKPSATGKVIDK Unmodified 1342.7456 0.7456298 413 E9PC90;P14635;Q5TZP9;D6RHI0 CCNB1 G2/mitotic-specific cyclin-B1 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 37.667 34.067 3 0.018979 2 27475 20150910_Q1_SA_NiHu_Masterprac_group13_C 59.75 23.429 12581000 984790 3063200 7391100 728400 0 413060 1652 413 1630 7384;7385;7386;7387;7388 4969;4970 4969 2 EALCDPTVASR Unmodified 1217.571 0.57103625 1443 Q9BRX2 PELO Protein pelota homolog yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 82.671 75.719 2 0.010566 2 52530 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.224 39.714 22072000 0 4958600 2894300 0 0 14220000 1653 1443 1631 7389;7390;7391 4971;4972 4972 2 EALCDPTVASRLSDTK Unmodified 1761.8567 0.85671317 1443 Q9BRX2 PELO Protein pelota homolog yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 2 3 114.86 106.88 2;3 8.4343E-18 6 72976 20150910_Q1_SA_NiHu_Masterprac_group15_B 104.16 83.635 68295000 8871700 12807000 10700000 1652100 13408000 20856000 1654 1443 1632 7392;7393;7394;7395;7396;7397;7398;7399;7400;7401 4973;4974;4975;4976;4977;4978 4974 5 EALERLLPQVEAARK Unmodified 1721.9788 0.97881763 1263 Q86UT8;E9PJ16;E9PPT8 CCDC84 Coiled-coil domain-containing protein 84 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 132.11 124.25 3 3.4452E-295 3 84524 20150910_Q1_SA_NiHu_Masterprac_group10_B 185.2 146.21 239010000 0 180140000 29755000 0 0 29118000 1655 1263 1633 7402;7403;7404 4979;4980;4981 4981 2 EALICPTCNVTIHNR Unmodified 1796.8662 0.86617242 198 F5H3H5;B7Z977;Q92974-3;Q92974-2;Q92974;Q5VY93 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 118.04 109.43 3 0.0020279 3 73206 20150910_Q1_SA_NiHu_Masterprac_group10_C 59.864 45.262 6587200 1789500 806240 0 1277900 2713500 0 1656 198 1634 7405;7406;7407;7408 4982;4983;4984 4984 3 EALNVINTHTK Unmodified 1238.6619 0.66190017 600 G5E9Z8;H0YH39;O76094 SRP72 Signal recognition particle subunit SRP72 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 2 2 2 82.506 76.734 2;3 0.020772 3 53004 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.013 31.981 4266700 311850 321400 0 608850 1491300 1533300 1657 600 1635 7409;7410;7411;7412;7413;7414;7415;7416 4985;4986;4987 4986 2 EALQDVEDENQ Unmodified 1288.5419 0.54190419 987 P62258-2;P62258;I3L0W5 YWHAE 14-3-3 protein epsilon yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 87.84 82.199 2 0.013912 1 55821 20150910_Q1_SA_NiHu_Masterprac_group10_B 60.255 43.636 1679600 319790 1359800 0 0 0 0 1658 987 1636 7417;7418 4988 4988 1 EALRGAVLNGGPPSTR Unmodified 1593.8587 0.8587025 101 Q5TDE7;Q5TDE8;B4DLZ9;Q5VTB9;F8WB55 RNF220 E3 ubiquitin-protein ligase RNF220 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 101.01 91.239 3 0.036051 1 62357 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.687 3.8456 1786500 0 0 591410 0 0 1195100 1659 101 1637 7419;7420 4989 4989 1 EAMVQAEEAAAEITRK Unmodified 1745.8618 0.86179854 692 O00567;H0YDU4;H0Y653;E9PDI8 NOP56 Nucleolar protein 56 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 1 1 132.58 123.49 2;3 2.6819E-164 4 78643 20150910_Q1_SA_NiHu_Masterprac_group10_C 158.93 112.05 178490000 75781000 0 0 57824000 0 44890000 1660 692 1638 7421;7422;7423;7424 4990;4991;4992;4993 4992 4 EAMVQAEEAAAEITRK Oxidation (M) 1761.8567 0.85671317 692 O00567;H0YDU4;H0Y653;E9PDI8 NOP56 Nucleolar protein 56 yes no 0 1 1 By matching By matching By MS/MS By matching By MS/MS By matching 2 2 2 2 1 115.18 107.81 3 0.0021313 3 75866 20150910_Q1_SA_NiHu_Masterprac_group15_C 74.726 60.686 11859000 0 1360500 311110 1725900 6889000 1572200 1661 692 1638 7425;7426;7427;7428;7429;7430;7431;7432;7433 4994;4995;4996 4995 69 3 EANDSDVQPSGAQRAEAFVR Unmodified 2146.0039 0.0039227641 773 O95707 POP4 Ribonuclease P protein subunit p29 yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 114.85 104.23 3 0.0020738 3 73946 20150910_Q1_SA_NiHu_Masterprac_group15_C 50.722 27.74 10787000 2427300 0 1927700 1494300 1332100 3605800 1662 773 1639 7434;7435;7436;7437;7438 4997;4998;4999 4998 3 EANEILQR Unmodified 971.50361 0.50360861 610 H0Y4R1;P12268;E7ETK5;C9K0R9;F5H247;P20839-2;P20839-4;C9J381;P20839;E7EQS0;P20839-3;C9JV30 IMPDH2;IMPDH1 Inosine-5'-monophosphate dehydrogenase 2;Inosine-5'-monophosphate dehydrogenase 1;Inosine-5'-monophosphate dehydrogenase yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 77.252 61.711 2 0.018279 1 48758 20150910_Q1_SA_NiHu_Masterprac_group15_C 81.296 23.707 1625300 0 0 0 0 1625300 0 1663 610 1640 7439 5000 5000 1 EAPAMGSEEGMR Unmodified 1263.5224 0.5223715 1231 Q6PJG2;F6RU81;H7C1L3 ELMSAN1 ELM2 and SANT domain-containing protein 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 70.963 65.986 2 0.032076 1 51367 20150910_Q1_SA_NiHu_Masterprac_group15_C 46.88 36.691 2314700 0 408830 0 360780 707950 837150 1664 1231 1641 7440;7441;7442;7443 5001 5001 1 EAPAPVAHPAPGGPEEQWQR Unmodified 2123.0185 0.018450616 1402 Q96KM6 ZNF512B Zinc finger protein 512B yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 108.6 100.62 3 0.037296 1 73619 20150910_Q1_SA_NiHu_Masterprac_group13_C 32.121 18.967 37563000 0 9651000 10222000 4857200 11463000 1369800 1665 1402 1642 7444;7445;7446;7447;7448 5002 5002 1 EAPATQASSTTQLTDTQVLAAENK Unmodified 2474.2136 0.21364077 1614 Q9UNF1;Q9UNF1-2;H7BXW3;Q5H909 MAGED2 Melanoma-associated antigen D2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 130.71 127.92 2;3 5.7445E-11 2 85965 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.65 68.112 10055000 0 2060900 0 0 0 7994000 1666 1614 1643 7449;7450 5003;5004 5003 2 EAPSPTCPDLGAK Unmodified 1341.6235 0.62346575 687 O00257 CBX4 E3 SUMO-protein ligase CBX4 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 88.617 79.919 2 0.025469 1 59912 20150910_Q1_SA_NiHu_Masterprac_group15_C 46.206 16.991 10011000 0 0 966620 866340 3756300 4422000 1667 687 1644 7451;7452;7453;7454 5005 5005 1 EAQELSQNSAIK Unmodified 1316.6572 0.65720872 1534 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 69.539 62.261 2 0 8 43565 20150910_Q1_SA_NiHu_Masterprac_group15_B 209.19 147.23 14352000 1669900 1412300 1053600 995480 5756000 3465200 1668 1534 1645 7455;7456;7457;7458;7459;7460 5006;5007;5008;5009;5010;5011;5012;5013 5008 8 EAQSEKEEAPKPLHK Unmodified 1719.8792 0.87916317 1351 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 36.94 31.826 3 0.0017823 1 25621 20150910_Q1_SA_NiHu_Masterprac_group13_C 73.219 73.219 3916000 0 0 1682300 526560 545240 1161900 1669 1351 1646 7461;7462;7463;7464 5014 5014 1 EAQTEGRTVPAAVTDLR Unmodified 1812.933 0.93298965 538 Q6ZR19;F8VSD5;P23467-2;P23467;F8VU56;P23467-3 PTPRB Receptor-type tyrosine-protein phosphatase beta yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 131.11 115.42 3 0.0039058 1 76726 20150910_Q1_SA_NiHu_Masterprac_group10_C 49.595 1.8654 9912500 9912500 0 0 0 0 0 1670 538 1647 7465 5015 5015 1 EARDVGDTCSVGK Unmodified 1392.6303 0.63034205 1157 Q1ED39;H3BPL4 KNOP1 Lysine-rich nucleolar protein 1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 44.971 34.418 3 0.019064 1 27969 20150910_Q1_SA_NiHu_Masterprac_group13_C 49.356 32.189 2178400 0 0 1825200 0 353220 0 1671 1157 1648 7466;7467 5016 5016 1 EARNVTMETE Unmodified 1178.5238 0.52375171 937 P49458 SRP9 Signal recognition particle 9 kDa protein yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 50.791 48.117 2 0.020442 1 34266 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.869 58.168 8415600 2745000 0 0 3087500 0 2583200 1672 937 1649 7468;7469;7470 5017 5017 1 EARQNVAEVESSK Unmodified 1445.711 0.71103521 1322 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 46.876 39.707 3 0.00075492 3 27638 20150910_Q1_SA_NiHu_Masterprac_group13_B 92.151 79.194 4767800 1386800 0 1509900 735580 1135600 0 1673 1322 1650 7471;7472;7473;7474 5018;5019;5020 5018 3 EASDPQPEEADGGLK Unmodified 1541.6845 0.68454569 961 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 73.969 66.575 2 0.0053654 3 46802 20150910_Q1_SA_NiHu_Masterprac_group10_B 52.599 39.677 6635500 426740 2089800 839270 1014500 733540 1531700 1674 961 1651 7475;7476;7477;7478;7479;7480 5021;5022;5023 5023 3 EASGETTGVDITK Unmodified 1306.6252 0.62523989 97 B4DLG2;O75152;E9PQ61 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 72.713 65.251 2 0.00015326 7 45478 20150910_Q1_SA_NiHu_Masterprac_group13_B 94.673 77.079 27525000 4446900 2643800 2490000 2703100 7217800 8023700 1675 97 1652 7481;7482;7483;7484;7485;7486;7487 5024;5025;5026;5027;5028;5029;5030 5024 7 EASGETTGVDITKIQVK Unmodified 1774.9313 0.93125832 97 B4DLG2;O75152;E9PQ61 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 1 1 1 125 117.65 2;3 8.478E-58 4 76698 20150910_Q1_SA_NiHu_Masterprac_group10_C 122.5 81.957 63671000 52348000 3061700 0 5440900 0 2821000 1676 97 1653 7488;7489;7490;7491;7492 5031;5032;5033;5034 5033 2 EASGETTGVDITKIQVKR Unmodified 1931.0324 0.032369346 97 B4DLG2;O75152;E9PQ61 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 119.68 105.09 4 0.026676 1 70502 20150910_Q1_SA_NiHu_Masterprac_group10_C 35.771 24.663 1167600 1167600 0 0 0 0 0 1677 97 1654 7493 5035 5035 1 EASHKQIMENAEINNIIK Unmodified 2081.0575 0.057538239 1035;655 P11388;H7BXX8;P11388-2;P11388-3;P11388-4;C9J5P2;H7BXH5;Q02880-2;Q02880;E9PCY5 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta;DNA topoisomerase 2 no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.53 125.57 3 1.8404E-05 1 85317 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.283 56.703 29045000 0 0 0 0 0 29045000 1678 655;1035 1655 7494 5036 5036 1 EATAQKPTGSVGSTVTTPPPLVR Unmodified 2293.2278 0.22777469 170 Q86YP4;B5MC40;Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 125.56 115.26 3 1.1478E-172 2 81110 20150910_Q1_SA_NiHu_Masterprac_group13_C 143.72 126.13 47210000 0 5994600 28676000 0 538220 12001000 1679 170 1656 7495;7496;7497;7498 5037;5038 5037 2 EATDAIGHLDR Unmodified 1196.5786 0.57856447 243 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;C9JFV5;Q12906;G5E9M5 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 80.591 73.855 2 0.017377 2 51306 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.567 24.51 2452100 0 851010 0 0 368740 1232400 1680 243 1657 7499;7500;7501 5039;5040 5040 2 EATHSSGFSGSSASVASTSSIK Unmodified 2083.9658 0.96580592 259 O60566-2;C9JLW5;O60566;O60566-3 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 100.74 83.75 3 0.018337 1 63887 20150910_Q1_SA_NiHu_Masterprac_group13_C 34.649 16.893 583160 0 0 583160 0 0 0 1681 259 1658 7502 5041 5041 1 EATPRGGGDGGGGGRSFSQPEAGGSHHK Unmodified 2649.2029 0.20285036 236 Q8WVV9-4;C9J9G0;Q8WVV9;Q5JB52;B7WPG3;Q8WVV9-3;Q8WVV9-2;C9IYN3 HNRNPLL;HNRPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 2 2 2 2 2 44.425 39.21 4;5 0.0010024 2 27474 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.215 34.909 22183000 0 4975800 5569800 2961500 3449700 5225900 1682 236 1659 7503;7504;7505;7506;7507;7508;7509;7510;7511;7512 5042;5043 5042 2 EATQILSVPK Unmodified 1084.6128 0.61282471 913 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 118.94 109.52 2 0.0031028 4 71915 20150910_Q1_SA_NiHu_Masterprac_group10_B 91.961 64.914 67558000 3611800 20873000 7002600 4809200 18093000 13169000 1683 913 1660 7513;7514;7515;7516;7517;7518 5044;5045;5046;5047 5047 4 EATTNAPFRLNK Unmodified 1360.7099 0.709913 166 B4E3A8;P30740;B4DNT0 SERPINB1 Leukocyte elastase inhibitor yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 93.698 85.62 3 0.0018972 4 65087 20150910_Q1_SA_NiHu_Masterprac_group13_C 84.31 84.31 17721000 3694900 242930 4476900 3600300 1684400 4021100 1684 166 1661 7519;7520;7521;7522;7523;7524;7525 5048;5049;5050;5051 5049 4 EAVATIMSGSK Unmodified 1092.5485 0.5485099 676 H9KV59;O43663;O43663-2 PRC1 Protein regulator of cytokinesis 1 no no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 90.806 86.327 2 0.0013333 2 58944 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.112 59.381 3706100 350000 1256000 0 0 0 2100100 1685 676 1662 7526;7527;7528 5052;5053 5052 2 EAVATIMSGSKAK Unmodified 1291.6806 0.6805867 676 H9KV59;O43663;O43663-2 PRC1 Protein regulator of cytokinesis 1 no no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 2 2 75.413 72.093 2;3 0.005016 3 49980 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.891 56.118 6230700 303380 3221900 0 0 0 2705500 1686 676 1663 7529;7530;7531;7532;7533 5054;5055;5056 5054 3 EAVGGQAEDHLKLK Unmodified 1493.7838 0.78380622 1280 Q8IWC1-2;Q8IWC1;H7BY77;Q8IWC1-3 MAP7D3 MAP7 domain-containing protein 3 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 84.697 77.119 3 0.0012463 3 53287 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.628 45.394 8693300 1691800 1282700 1233900 435840 1430800 2618300 1687 1280 1664 7534;7535;7536;7537;7538;7539 5057;5058;5059 5058 3 EAVLKDHTKIR Unmodified 1308.7514 0.75138388 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 49.585 42.49 3 0.037179 1 30299 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.633 40.304 1094200 0 455480 638760 0 0 0 1688 1109 1665 7540;7541 5060 5060 1 EAVSSSHGPSDPTDR Unmodified 1540.6754 0.67537798 966 P54278;P54278-3;C9J167;I3L0B5 PMS2 Mismatch repair endonuclease PMS2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 42.913 38.166 3 0.0069763 1 26997 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.527 35.342 928350 0 283010 166120 0 0 479220 1689 966 1666 7542;7543;7544 5061 5061 1 EAVSSSHGPSDPTDRAEVEK Unmodified 2096.9611 0.9610549 966 P54278;P54278-3;C9J167;I3L0B5 PMS2 Mismatch repair endonuclease PMS2 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 2 2 2 1 2 60.806 54.885 3;4 0.0016909 5 38805 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.76 42.245 14175000 843230 2928400 3584400 2710300 1470600 2638500 1690 966 1667 7545;7546;7547;7548;7549;7550;7551;7552;7553;7554 5062;5063;5064;5065;5066 5064 5 EAYPDHTQFEK Unmodified 1363.6044 0.60444487 1570 Q9P016;Q9P016-2 THYN1 Thymocyte nuclear protein 1 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 2 2 1 1 2 73.916 66.617 2;3 0.0062284 3 48017 20150910_Q1_SA_NiHu_Masterprac_group10_C 68.536 42.124 15018000 1800900 3899400 2306700 1061000 2043000 3907400 1691 1570 1668 7555;7556;7557;7558;7559;7560;7561;7562;7563;7564 5067;5068;5069 5069 3 EAYSGCSGPVDSECPPPPSSPVHK Unmodified 2540.0948 0.094787961 423 Q8N556;E9PDT7 AFAP1 Actin filament-associated protein 1 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 104.11 92.634 3 0.0070986 3 69189 20150910_Q1_SA_NiHu_Masterprac_group13_C 38.175 32.966 13774000 0 0 2659100 2920700 8194600 0 1692 423 1669 7565;7566;7567;7568 5070;5071;5072 5071 3 ECCDKPLLEK Unmodified 1290.5948 0.59480816 294 CON__P02769 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 1 2 1 2 59.804 54.605 2;3 4.906E-115 5 40134 20150910_Q1_SA_NiHu_Masterprac_group10_C 161.51 99.554 171580000 30205000 41784000 12853000 18695000 14307000 53739000 + 1693 294 1670 7569;7570;7571;7572;7573;7574;7575;7576;7577;7578 5073;5074;5075;5076;5077 5077 5 ECCHGDLLECADDR Unmodified 1748.6553 0.65525294 294 CON__P02769 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 91.445 84.576 3 0.00092167 1 57497 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.483 75.483 3007000 0 1548800 0 0 1066800 391390 + 1694 294 1671 7579;7580;7581 5078 5078 1 ECCHGDLLECADDRADLAK Unmodified 2246.9355 0.93545055 294 CON__P02769 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 1 1 2 3 3 117.32 107.85 2;3;4 2.7768E-51 8 73864 20150910_Q1_SA_NiHu_Masterprac_group15_B 116 112.58 281670000 33841000 25194000 12032000 14967000 25127000 170510000 + 1695 294 1672 7582;7583;7584;7585;7586;7587;7588;7589;7590;7591;7592;7593 5079;5080;5081;5082;5083;5084;5085;5086 5080 8 ECGQLLISENQK Unmodified 1417.6871 0.68712864 152 B4E0G4;Q8IWS0;E9PC97;Q5JRC6;Q8IWS0-2 PHF6 PHD finger protein 6 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 99.3 92.932 2 0.0019734 4 63300 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.101 65.772 10661000 1021800 3713400 1308500 1007500 0 3609300 1696 152 1673 7594;7595;7596;7597;7598 5087;5088;5089;5090 5089 4 ECIIVWEKKPTVEEK Unmodified 1886.9812 0.9811854 945 P49792;E9PGT0 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 2 1 124.16 113.33 3;4 1.1792E-69 6 78753 20150910_Q1_SA_NiHu_Masterprac_group15_C 131.66 103.63 31531000 6247200 1735200 7988200 2215200 10252000 3093000 1697 945 1674 7599;7600;7601;7602;7603;7604;7605;7606;7607;7608 5091;5092;5093;5094;5095;5096 5094 6 ECLAETERNART Unmodified 1448.6678 0.66779018 752 O75956 CDK2AP2 Cyclin-dependent kinase 2-associated protein 2 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 53.666 47.69 3 0.02626 1 34024 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.598 35.583 11704000 0 1269200 4048900 490160 601250 5294400 1698 752 1675 7609;7610;7611;7612;7613 5097 5097 1 ECPEIGPFAGRGQK Unmodified 1544.7406 0.7405612 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 105.83 96.128 3 0.0012335 3 64295 20150910_Q1_SA_NiHu_Masterprac_group10_B 84.605 53.534 2849800 0 2273400 576410 0 0 0 1699 1325 1676 7614;7615 5098;5099;5100 5100 2 ECPFFIKGNQK Unmodified 1366.6704 0.67035637 1333 Q8TA86;C9J6V2 RP9 Retinitis pigmentosa 9 protein yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 107.58 97.913 3 0.0096136 2 70517 20150910_Q1_SA_NiHu_Masterprac_group15_C 65.627 40.388 9846000 1359800 1555500 631850 1438700 4860100 0 1700 1333 1677 7616;7617;7618;7619;7620 5101;5102 5102 2 ECTIEATA Unmodified 893.38005 0.38004758 112;992 B4DP17;P62633-3;P62633-2;P62633;P62633-5;E9PDR7;P62633-4 CNBP Cellular nucleic acid-binding protein no no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 70.698 61.899 1 0.0082194 2 49473 20150910_Q1_SA_NiHu_Masterprac_group13_C 68.915 17.949 3511900 0 903770 1493300 0 243550 871250 1701 112;992 1678 7621;7622;7623;7624 5103;5104 5103 2 ECVLPGGETAGDMGK Unmodified 1519.6647 0.66467864 162 B4E2Z2;P43246;E9PHA6;E7EU21;E7EQQ1 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 111.41 101.44 2 0.00061075 5 69050 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.802 56.016 12848000 0 3456400 1564100 0 804760 7023000 1702 162 1679 7625;7626;7627;7628 5105;5106;5107;5108;5109 5106 5 ECVNCGATATPLWRR Unmodified 1789.8352 0.83520664 869 P23769;P23769-2;P15976-3;B7WNQ9;P15976-2;P15976 GATA2;GATA1 Endothelial transcription factor GATA-2;Erythroid transcription factor yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 110.14 106.48 3 0.019612 1 72773 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.3 13.801 1261700 0 0 0 0 0 1261700 1703 869 1680 7629 5110 5110 1 EDAAGTSGLGELNSR Unmodified 1475.6852 0.68521439 1191 Q5T3I0;Q5T3I0-3;E9PAV9;F8W895 GPATCH4 G patch domain-containing protein 4 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 99.555 91.894 2 2.9331E-13 6 62100 20150910_Q1_SA_NiHu_Masterprac_group10_B 101.42 68.117 14942000 0 3223100 1198300 877590 2172500 7471000 1704 1191 1681 7630;7631;7632;7633;7634 5111;5112;5113;5114;5115;5116 5116 5 EDAAGTSGLGELNSREQTNQSLRK Unmodified 2560.2477 0.24773486 1191 Q5T3I0;Q5T3I0-3;E9PAV9;F8W895 GPATCH4 G patch domain-containing protein 4 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 100.68 91.184 4 0.028768 1 66766 20150910_Q1_SA_NiHu_Masterprac_group15_C 31.488 20.022 5088700 0 0 0 0 2614500 2474100 1705 1191 1682 7635;7636 5117 5117 1 EDAEAPGIRDHESL Unmodified 1537.7009 0.70086445 954 P51858;A8K8G0;Q5SZ08;Q5SZ07 HDGF Hepatoma-derived growth factor yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 2 1 2 93.691 86.848 2;3 0.0035718 6 65677 20150910_Q1_SA_NiHu_Masterprac_group13_C 59.227 43.726 42500000 4395800 8937000 5873600 4821000 5965700 12507000 1706 954 1683 7637;7638;7639;7640;7641;7642;7643;7644;7645;7646 5118;5119;5120;5121;5122;5123 5118 6 EDAGDNDDTEGAIGVR Unmodified 1632.6863 0.6863366 1481 Q9H0S4;G5E955 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 81.664 74.745 2 2.4105E-11 1 51631 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.489 77.484 2455100 0 773560 342550 0 0 1339000 1707 1481 1684 7647;7648;7649 5124 5124 1 EDAGDNDDTEGAIGVRNK Unmodified 1874.8242 0.82422706 1481 Q9H0S4;G5E955 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 65.891 58.797 3 0.0016728 4 46833 20150910_Q1_SA_NiHu_Masterprac_group15_C 57.595 50.084 7760100 1816300 1755600 667290 459950 1209400 1851600 1708 1481 1685 7650;7651;7652;7653;7654;7655 5125;5126;5127;5128 5126 4 EDALVTKNLVPGESVYGEK Unmodified 2047.0474 0.047350708 862 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 1 132.74 123.6 2;3 3.1276E-295 7 87495 20150910_Q1_SA_NiHu_Masterprac_group15_B 176.85 146.14 520930000 164130000 138540000 0 119590000 35903000 62751000 1709 862 1686 7656;7657;7658;7659;7660;7661;7662;7663 5129;5130;5131;5132;5133;5134;5135 5130 7 EDCLLGSAK Unmodified 991.46445 0.46444592 238 C9JA69;Q8WY36-2;Q8WY36 BBX HMG box transcription factor BBX yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 70.659 69.504 2 0.014363 1 48150 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.098 17.98 3016600 0 0 0 0 0 3016600 1710 238 1687 7664 5136 5136 1 EDCVKGDPVEK Unmodified 1274.5813 0.58126659 1554 Q9NWH9;H7BXE3 SLTM SAFB-like transcription modulator yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 46.976 36.399 2 0.023327 1 29578 20150910_Q1_SA_NiHu_Masterprac_group13_C 66.267 40.149 504250 0 0 504250 0 0 0 1711 1554 1688 7665 5137 5137 1 EDDEYEAFRK Unmodified 1300.5572 0.55716033 1283 Q8IWZ8 SUGP1 SURP and G-patch domain-containing protein 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 80.588 71.665 3 0.012359 1 49815 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.398 36.644 2530000 0 0 725680 0 0 1804300 1712 1283 1689 7666;7667 5138 5138 1 EDDRSWQGTADGGMMDRDHK Unmodified 2305.944 0.9440414 1137 Q15424;F5H1L1;F5H0H3;F5GZU3;B7Z959;B7Z2F6 SAFB Scaffold attachment factor B1 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 87.192 79.564 4 0.0082393 2 59790 20150910_Q1_SA_NiHu_Masterprac_group15_C 41.422 41.422 13245000 1469800 1222700 3396800 1754900 2915900 2484900 1713 1137 1690 7668;7669;7670;7671;7672;7673 5139;5140 5140 2 EDEDADGKEVEDADEK Unmodified 1792.7123 0.71227658 720 O43719;E9PFP2 HTATSF1 HIV Tat-specific factor 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 49.571 45.447 3 0.0023897 3 37820 20150910_Q1_SA_NiHu_Masterprac_group15_C 60.968 57.195 2942200 0 686060 0 476770 846970 932440 1714 720 1691 7674;7675;7676;7677 5141;5142;5143 5143 3 EDEEEDEPVVIK Unmodified 1429.646 0.64603491 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 100.13 92.017 2 0 8 62077 20150910_Q1_SA_NiHu_Masterprac_group10_B 223.08 201.02 79530000 3063900 22137000 8397600 4103600 9070300 32757000 1715 1611 1692 7678;7679;7680;7681;7682;7683 5144;5145;5146;5147;5148;5149;5150;5151 5150 8 EDEEYADEKGLEAADK Unmodified 1810.7745 0.7744829 720 O43719 HTATSF1 HIV Tat-specific factor 1 yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 87.866 80.046 3 3.3756E-07 7 61443 20150910_Q1_SA_NiHu_Masterprac_group13_C 93.237 93.237 20305000 2809000 3159800 5244600 2767600 3306600 3017200 1716 720 1693 7684;7685;7686;7687;7688;7689;7690 5152;5153;5154;5155;5156;5157;5158 5153 6 EDENLVINEVINSPKGK Unmodified 1896.9793 0.97927114 1180 Q5FWF5;Q5FWF5-2 ESCO1 N-acetyltransferase ESCO1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 133.05 132.44 3 0.0031694 1 86043 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.939 42.243 13111000 0 13111000 0 0 0 0 1717 1180 1694 7691 5159 5159 1 EDFAEVCK Unmodified 996.42225 0.42224675 1449 Q9BU76-4;Q9BU76;Q9BU76-2;Q9BU76-3 MMTAG2 Multiple myeloma tumor-associated protein 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 78.936 71.316 2 4.5029E-06 7 49597 20150910_Q1_SA_NiHu_Masterprac_group10_C 118.74 94.224 52441000 11236000 5537800 6743400 7266300 11855000 9802500 1718 1449 1695 7692;7693;7694;7695;7696;7697;7698 5160;5161;5162;5163;5164;5165;5166 5165 7 EDFSDMVAEHAAK Unmodified 1448.6242 0.62419403 1083 Q13435;E9PPJ0;H0YEX5 SF3B2 Splicing factor 3B subunit 2 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 121.74 114.69 3 0.031863 1 75875 20150910_Q1_SA_NiHu_Masterprac_group10_C 41.825 17.571 3062700 1137100 592630 0 0 0 1333000 1719 1083 1696 7699;7700;7701 5167 5167 1 EDFVLSITGK Unmodified 1107.5812 0.58119023 563 P08651-4;P08651-5;P08651-3;P08651-2;P08651;F8W9H9 NFIC Nuclear factor 1 C-type yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.92 132.32 2 0.011321 1 85900 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.221 3.0892 4780000 0 4780000 0 0 0 0 1720 563 1697 7702 5168 5168 1 EDGSEVGVGGAQVTGSNTRK Unmodified 1946.9294 0.92936084 1088 Q13618-3;Q13618-2;Q13618;H7C399 CUL3 Cullin-3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 70.181 63.463 3 0.00019091 1 44381 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.062 42.81 1974600 0 623190 316480 0 0 1034900 1721 1088 1698 7703;7704;7705 5169 5169 1 EDHEVEVGVLK Unmodified 1252.6299 0.62993134 1345 Q8WYP5;Q8WYP5-3;Q8WYP5-2 AHCTF1 Protein ELYS yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 96.069 89.066 3 5.5391E-05 2 60286 20150910_Q1_SA_NiHu_Masterprac_group10_B 100.88 64.558 2765800 0 1144500 0 0 397020 1224300 1722 1345 1699 7706;7707;7708 5170;5171 5171 2 EDHGRGYFEYIEENKYSR Unmodified 2291.0243 0.024323855 1022;1023 Q00839;B3KX72;Q5RI18;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 126.28 121.42 4 0.0014402 1 82234 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.949 50.951 2116200 0 0 0 0 0 2116200 1723 1022;1023 1700 7709 5172 5172 1 EDIGVGSYSVCK Unmodified 1312.5969 0.59691665 86 B7Z3B5;F5GYC4;B4DG22;B7ZB17;Q15349;P51812;Q15349-3;Q9UK32;B7ZL90;Q15349-2;F2Z2J1 RPS6KA2;RPS6KA3;RPS6KA6 Ribosomal protein S6 kinase alpha-2;Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6;Ribosomal protein S6 kinase yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 107.36 104.87 2 8.1804E-12 2 69313 20150910_Q1_SA_NiHu_Masterprac_group10_B 107.39 79.905 1999500 0 749370 0 0 0 1250100 1724 86 1701 7710;7711 5173;5174 5174 2 EDINAIEMEEDK Unmodified 1434.6184 0.61843995 942 P49756;P49756-2;P49756-3;H0YE46 RBM25 RNA-binding protein 25 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 115.65 106.63 2 2.5535E-97 6 71650 20150910_Q1_SA_NiHu_Masterprac_group10_C 150.14 139.49 47856000 6071000 4403500 5181600 3527300 17752000 10921000 1725 942 1702 7712;7713;7714;7715;7716;7717;7718;7719 5175;5176;5177;5178;5179;5180 5180 6 EDLLNNGQPR Unmodified 1154.568 0.56799978 1343 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-5;Q8WX93-4;Q8WX93-2;Q8WX93-9 PALLD Palladin yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 80.328 71.405 2 0.0049765 2 49743 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.258 40.796 1957900 0 0 278390 0 0 1679500 1726 1343 1703 7720;7721 5181;5182 5182 2 EDLLNNGQPRLTYEER Unmodified 1945.9494 0.949368 1343 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-5;Q8WX93-4;Q8WX93-2;Q8WX93-9 PALLD Palladin yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 126.88 124.09 3 0.015696 1 83952 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.317 20.651 3302900 0 653590 0 0 0 2649300 1727 1343 1704 7722;7723 5183 5183 1 EDMAALEK Unmodified 905.41643 0.41643309 518;44 G3V1U9;Q9BQE3;Q71U36;P68363;F5H5D3;F8VXZ4;F8VWX4;E7ET24;A8MUB1;P68366 TUBA1A;TUBA1C;TUBA1B;TUBA4A Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain no no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 71.771 64.443 2 0.014732 4 51224 20150910_Q1_SA_NiHu_Masterprac_group13_C 87.639 30.462 18882000 1306800 3927400 4506700 857540 2341600 5942200 1728 518;44 1705 7724;7725;7726;7727;7728;7729 5184;5185;5186;5187 5184 4 EDNIGNQLLRK Unmodified 1298.6943 0.69426293 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 2 1 2 1 2 1 101.99 91.622 2;3 5.586E-08 5 67115 20150910_Q1_SA_NiHu_Masterprac_group15_C 107.55 35.459 12831000 1957600 960670 1904700 565340 3590300 3852500 1729 578 1706 7730;7731;7732;7733;7734;7735;7736;7737;7738 5188;5189;5190;5191;5192 5191 5 EDQLLCTDCYSNEYSSK Unmodified 2110.846 0.84595006 1101 Q14192 FHL2 Four and a half LIM domains protein 2 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 129.28 117.88 2 3.8763E-155 4 81983 20150910_Q1_SA_NiHu_Masterprac_group13_C 149.73 146.2 44166000 16392000 3158700 16681000 0 3440700 4493200 1730 1101 1707 7739;7740;7741;7742;7743 5193;5194;5195;5196 5193 4 EDQPAVPGETQGDSYFTGK Unmodified 2024.8963 0.89632937 1617 Q9UNX4 WDR3 WD repeat-containing protein 3 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 129.97 118.69 2 1.0849E-38 3 84896 20150910_Q1_SA_NiHu_Masterprac_group15_B 112.44 106.32 16315000 1818100 0 3216700 558880 1202100 9518700 1731 1617 1708 7744;7745;7746;7747;7748 5197;5198;5199 5198 3 EDSAWEPQK Unmodified 1088.4775 0.47745344 1302 Q8N5C6 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 67.715 60.571 2 0.0065883 2 48425 20150910_Q1_SA_NiHu_Masterprac_group13_C 91.265 30.583 16437000 2275500 3601300 3588700 918880 2737500 3314800 1732 1302 1709 7749;7750;7751;7752;7753;7754 5200;5201 5200 2 EDSNLTLQEK Unmodified 1175.567 0.56699673 929 P46940;H0YLE8 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 69.123 64.172 2 0.011321 2 49899 20150910_Q1_SA_NiHu_Masterprac_group15_C 71.221 39.232 12438000 0 2918800 0 878360 2781100 5860300 1733 929 1710 7755;7756;7757;7758 5202;5203 5203 2 EDSQPGEQNDQGETGSLPGQQEK Unmodified 2457.0528 0.05278303 1545 Q9NUA8;F8WAI8 ZBTB40 Zinc finger and BTB domain-containing protein 40 yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 78.437 71.077 3 0.0020301 2 56204 20150910_Q1_SA_NiHu_Masterprac_group13_C 49.662 43.701 14406000 0 1776200 2192400 3503700 4003400 2929900 1734 1545 1711 7759;7760;7761;7762;7763 5204;5205 5204 2 EDSQPPTPVSQR Unmodified 1339.6368 0.63680763 1359 Q92785 DPF2 Zinc finger protein ubi-d4 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 2 60.553 54.076 2 0.008871 2 44304 20150910_Q1_SA_NiHu_Masterprac_group13_C 60.08 36.566 5330700 0 1260700 633040 349210 1120700 1967100 1735 1359 1712 7764;7765;7766;7767;7768;7769 5206;5207 5206 2 EDSVKPGAHLTVKK Unmodified 1507.8358 0.83584179 371;955 E7EWI9;E7ERJ4;P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 50.915 45.099 3 0.0051565 2 32334 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.033 42.839 6819800 0 1102700 1073400 734610 1605900 2303200 1736 371;955 1713 7770;7771;7772;7773;7774 5208;5209 5208 2 EDTEEHHLRDYFEEYGK Unmodified 2195.9396 0.93959117 863 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 131.03 126.07 3 2.8522E-21 1 85844 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.75 79.385 18963000 0 0 0 0 0 18963000 1737 863 1714 7775 5210 5210 1 EDTEELRQKYK Unmodified 1437.71 0.70997257 1601 Q9UKJ3;Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 54.708 47.399 3 0.012591 1 33828 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.148 35.468 3285000 438620 605590 397580 0 918740 924500 1738 1601 1715 7776;7777;7778;7779;7780 5211 5211 1 EDTEEYNLR Unmodified 1167.5044 0.50439647 371;955 E7EWI9;E7ERJ4;P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 73.837 67.201 2 0.0019716 3 46784 20150910_Q1_SA_NiHu_Masterprac_group15_B 106.68 88.624 6556200 0 1722900 0 0 1150700 3682600 1739 371;955 1716 7781;7782;7783 5212;5213;5214 5212 3 EDTEEYNLRDYFEK Unmodified 1849.8006 0.80063808 371;955 E7EWI9;E7ERJ4;P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 133.01 126.1 2;3 1.1339E-42 5 82039 20150910_Q1_SA_NiHu_Masterprac_group15_C 124.48 99.12 184150000 0 52296000 33363000 41457000 19477000 37560000 1740 371;955 1717 7784;7785;7786;7787;7788;7789 5215;5216;5217;5218;5219 5218 5 EDTGDQQGLLK Unmodified 1202.5779 0.57789577 258 Q13111-2;C9JLF8;Q13111-3;Q13111 CHAF1A Chromatin assembly factor 1 subunit A yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 68.135 66.052 2 0.00033846 2 46308 20150910_Q1_SA_NiHu_Masterprac_group10_B 97.734 72.26 2176600 0 654200 0 0 0 1522400 1741 258 1718 7790;7791 5220;5221 5221 2 EDVAMELER Unmodified 1090.4965 0.49647433 769 O95243-2 MBD4 Methyl-CpG-binding domain protein 4 no no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1 111.2 100.79 2 0.014101 4 72262 20150910_Q1_SA_NiHu_Masterprac_group15_C 78.556 40.253 16891000 2704700 2692600 1875400 1515000 2366000 5736900 1742 769 1719 7792;7793;7794;7795;7796;7797;7798;7799 5222;5223;5224;5225 5224 4 EDVDPHNGADDVFSSSGSLGK Unmodified 2131.9294 0.92942042 1547 Q9NV56 MRGBP MRG/MORF4L-binding protein yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 130.41 113.27 3 1.2831E-22 2 76416 20150910_Q1_SA_NiHu_Masterprac_group10_C 96.012 68.299 18281000 8112600 0 9017300 0 1151200 0 1743 1547 1720 7800;7801;7802 5226;5227 5227 2 EDVFVHQTAIKK Unmodified 1413.7616 0.76161421 380 E7ETA0;P67809;H0Y449;P16989-2;P16989-3;P16989 YBX1;YBX3 Nuclease-sensitive element-binding protein 1;Y-box-binding protein 3 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 81.683 72.649 3 0.0020854 4 55853 20150910_Q1_SA_NiHu_Masterprac_group15_C 66.267 49.647 9585100 1317400 1300900 1163300 0 3858400 1945200 1744 380 1721 7803;7804;7805;7806;7807 5228;5229;5230;5231 5229 4 EDVSASGPSPEATQLAK Unmodified 1685.8108 0.81080883 1422 Q96T58 SPEN Msx2-interacting protein yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 101.47 91.772 2 0.0022818 2 61887 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.127 44.401 1814100 0 1085700 728380 0 0 0 1745 1422 1722 7808;7809 5232;5233 5232 2 EEAEALYHSK Unmodified 1175.5459 0.54586736 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 56.736 50.327 2 2.4731E-05 3 41051 20150910_Q1_SA_NiHu_Masterprac_group13_C 110.84 110.84 23228000 430990 6090600 11085000 1426600 727410 3467600 + 1746 302 1723 7810;7811;7812;7813;7814;7815 5234;5235;5236 5235 3 EEAEETNVLPKEK Unmodified 1514.7464 0.74641766 1112 Q14690;F5H7X0 PDCD11 Protein RRP5 homolog yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 81.066 69.804 3 0.026109 1 48357 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.159 33.528 3812300 0 0 378290 0 1715100 1718900 1747 1112 1724 7816;7817;7818 5237 5237 1 EEAEIQAELER Unmodified 1315.6256 0.62557424 1262 Q86UE8-3;Q86UE8-2;Q86UE8;Q9UKI8-3;Q9UKI8-4;Q9UKI8-5;Q9UKI8;Q9UKI8-2 TLK2;TLK1 Serine/threonine-protein kinase tousled-like 2;Serine/threonine-protein kinase tousled-like 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 108.11 104.55 2 0.038051 1 71401 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.666 50.654 611800 0 0 0 0 0 611800 1748 1262 1725 7819 5238 5238 0 EEAGETSPADESGAPK Unmodified 1573.6744 0.67437493 1604 Q9UKY1;H0YB50 ZHX1 Zinc fingers and homeoboxes protein 1 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 51.856 45.865 2 0.001271 3 32768 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.346 58.38 5110500 405060 1274500 595990 375010 823720 1636200 1749 1604 1726 7820;7821;7822;7823;7824;7825 5239;5240;5241 5239 3 EEAGGEAAAAAAAERGEMK Unmodified 1817.8214 0.82139029 694 O14497-2;O14497 ARID1A AT-rich interactive domain-containing protein 1A yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 100.74 91.241 3 0.032115 1 62367 20150910_Q1_SA_NiHu_Masterprac_group15_B 34.669 12.768 1935400 0 0 0 0 559700 1375700 1750 694 1727 7826;7827 5242 5242 1 EEAGGLLQCPEVAK Unmodified 1499.729 0.72899346 39 Q7Z5J4-3;E7EVZ3;Q7Z5J4;A8MTC3;Q7Z5J4-2;C9JWB0;A8MXE8;Q7Z5J4-4;E7ETW1 RAI1 Retinoic acid-induced protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 120.81 118.08 2 0.0090624 2 76365 20150910_Q1_SA_NiHu_Masterprac_group10_B 51.771 36.609 1830800 0 888250 0 0 0 942590 1751 39 1728 7828;7829 5243;5244 5244 2 EEAQWTPTK Unmodified 1088.5138 0.51383895 604 Q5SW79-2;Q5SW79-3;H0Y2V6;Q5SW79 CEP170 Centrosomal protein of 170 kDa yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 69.085 65 2 0.039895 1 45211 20150910_Q1_SA_NiHu_Masterprac_group13_B 60.064 35.842 648160 398020 0 0 250150 0 0 1752 604 1729 7830;7831 5245 5245 1 EEAVKEKSPSLGK Unmodified 1400.7511 0.75110911 753 O76021;B4DJ58 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 46.635 41.196 3 0.028664 1 29203 20150910_Q1_SA_NiHu_Masterprac_group10_B 56.414 27.705 6798000 2197300 1016200 1167600 778560 234080 1404200 1753 753 1730 7832;7833;7834;7835;7836;7837 5246 5246 1 EEDIAVLAEEK Unmodified 1244.6136 0.61361257 264 Q8TAF3-2;C9JQ19;Q8TAF3-5;Q8TAF3-4;Q8TAF3-3;Q8TAF3 WDR48 WD repeat-containing protein 48 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 123.26 120.57 2 0.010566 1 77582 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.224 64.224 3721400 0 1199800 0 0 0 2521600 1754 264 1731 7838;7839 5247 5247 1 EEEDDHMEYCRVCK Unmodified 1898.7233 0.72333251 430 Q12873;E9PG89;Q12873-2;H7C2H0 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 2 63.669 61.586 3;4 0.001128 4 43063 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.698 74.698 5809200 0 1912900 0 0 0 3896300 1755 430 1732 7840;7841;7842;7843 5248;5249;5250;5251 5248 4 EEEDEELDLNK Unmodified 1361.5834 0.58343466 1253 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3;Q8WVX6 WAPAL Wings apart-like protein homolog yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 84.139 83.311 2 0.0019166 1 57170 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.805 69.027 952170 0 0 0 160340 0 791830 1756 1253 1733 7844;7845 5252 5252 1 EEEEEEEEDQEGDRETTIRGK Unmodified 2536.0685 0.068492673 1134 Q15269 PWP2 Periodic tryptophan protein 2 homolog yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 64.685 55.86 3;4 2.4945E-07 2 39275 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.656 62.401 1993900 0 1020200 0 0 973710 0 1757 1134 1734 7846;7847;7848 5253;5254 5253 2 EEEEEENFPGQASSQQVHSENIK Unmodified 2644.1525 0.15249707 835 P13682;C9JGR2;C9J011;C9JGS9 ZNF35 Zinc finger protein 35 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 102.36 94.555 3 3.3251E-14 3 64670 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.666 83.666 16024000 0 2807000 2287800 6499800 2187700 2241200 1758 835 1735 7849;7850;7851;7852;7853 5255;5256;5257 5257 3 EEEEEVFESSVPQR Unmodified 1692.7479 0.74787422 259 O60566-2;C9JLW5;O60566;O60566-3;H0YMK5 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 118.96 114.39 2 0.0288 1 78014 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.621 32.339 266860 0 0 0 0 0 266860 1759 259 1736 7854 5258 5258 1 EEEEEYEEEGEEEGEK Unmodified 1971.7229 0.72290084 430 Q12873;E9PG89;Q12873-2;H7C2H0 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 73.579 68.415 2 3.6643E-12 2 47480 20150910_Q1_SA_NiHu_Masterprac_group15_B 100.43 92.512 10645000 0 5359500 1655800 172630 0 3456800 1760 430 1737 7855;7856;7857;7858 5259;5260 5259 2 EEEELMEKPQKETK Unmodified 1746.8346 0.83458074 1071 Q13123;Q9H4P6;E7EQZ7;D6REL4 IK Protein Red yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 57.57 51.273 3 0.0051753 1 36645 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.997 53.028 2638400 0 441540 656760 205690 544520 789930 1761 1071 1738 7859;7860;7861;7862;7863 5261 5261 1 EEEEVRQQALLAK Unmodified 1541.8049 0.80493559 1426 Q99543;Q99543-2 DNAJC2 DnaJ homolog subfamily C member 2 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 86.96 79.331 3 0.0018304 5 54538 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.632 43.068 9500900 1664000 1668200 1259700 1348300 1889000 1671600 1762 1426 1739 7864;7865;7866;7867;7868;7869 5262;5263;5264;5265;5266 5264 5 EEEGVPDEEGWVK Unmodified 1501.6573 0.6572683 1643 Q9Y3A4;Q9NSQ0 RRP7A;RRP7B Ribosomal RNA-processing protein 7 homolog A;Putative ribosomal RNA-processing protein 7 homolog B yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 126.71 114.56 2 2.5543E-06 2 79639 20150910_Q1_SA_NiHu_Masterprac_group15_C 100.73 91.278 20496000 0 5780900 10497000 0 4218500 0 1763 1643 1740 7870;7871;7872 5267;5268 5267 2 EEEGVPDEEGWVKVTR Unmodified 1857.8745 0.87447172 1643 Q9Y3A4;Q9NSQ0 RRP7A;RRP7B Ribosomal RNA-processing protein 7 homolog A;Putative ribosomal RNA-processing protein 7 homolog B yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 130.36 130.06 3 0.0028063 1 83196 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.782 30.328 8138500 0 5555500 0 2583000 0 0 1764 1643 1741 7873;7874 5269 5269 1 EEEIEVDSR Unmodified 1104.4935 0.49349744 1120 Q14978;Q14978-3;Q14978-2 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 67.556 60.412 2 0.0097402 4 42383 20150910_Q1_SA_NiHu_Masterprac_group15_B 85.533 29.102 31649000 5592500 5803600 1451800 734570 13989000 4077500 1765 1120 1742 7875;7876;7877;7878;7879;7880 5270;5271;5272;5273 5271 4 EEEIEVDSRVADNSFDAK Unmodified 2051.9284 0.92835778 1120 Q14978;Q14978-3;Q14978-2 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 127.41 116.05 3 1.3946E-73 4 76632 20150910_Q1_SA_NiHu_Masterprac_group10_C 125.67 99.31 200540000 162080000 5153400 5347900 0 25867000 2099100 1766 1120 1743 7881;7882;7883;7884;7885 5274;5275;5276;5277 5277 4 EEEMGEEEEVER Unmodified 1493.5828 0.58278273 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 76.104 67.03 2 2.2944E-37 3 46672 20150910_Q1_SA_NiHu_Masterprac_group15_B 127.52 102.82 17841000 0 4236300 1428400 0 246200 11931000 1767 486 1744 7886;7887;7888;7889 5278;5279;5280 5278 3 EEESIEGEKEVK Unmodified 1404.662 0.66201933 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 56.752 48.167 3 0.026188 1 34286 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.448 29.241 9080300 277980 0 2824200 0 372440 5605600 1768 486 1745 7890;7891;7892;7893 5281 5281 1 EEESIEGEKEVKSTAPETAIECTQAPAPASEDEK Unmodified 3688.6785 0.67854019 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 129.27 111.27 4 3.3281E-17 2 79999 20150910_Q1_SA_NiHu_Masterprac_group13_C 57.097 50.692 9257100 0 0 9257100 0 0 0 1769 486 1746 7894 5282;5283 5283 2 EEETSIDVAGKPNEVTK Unmodified 1844.9004 0.90035212 964 P53985 SLC16A1 Monocarboxylate transporter 1 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 90.849 83.07 3 0.0026127 3 56931 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.862 36.791 6670500 1908200 848850 850050 893570 1449300 720550 1770 964 1747 7895;7896;7897;7898;7899;7900 5284;5285;5286 5285 3 EEEVSGVSDPQPQDAGSRK Unmodified 2013.9239 0.92394111 687 O00257 CBX4 E3 SUMO-protein ligase CBX4 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 70.768 63.44 3 0.0048704 2 49817 20150910_Q1_SA_NiHu_Masterprac_group15_C 41.422 16.505 6766400 1006200 1225000 1091400 830210 1580700 1032900 1771 687 1748 7901;7902;7903;7904;7905;7906 5287;5288 5288 2 EEEVSLQGINTRK Unmodified 1501.7736 0.77363546 1663 Q9Y6W5;Q9Y6W5-2 WASF2 Wiskott-Aldrich syndrome protein family member 2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 92.665 90.757 3 0.00012806 1 61218 20150910_Q1_SA_NiHu_Masterprac_group10_B 87.216 42.604 0 0 0 0 0 0 0 1772 1663 1749 7907 5289 5289 1 EEEWDPEYTPK Unmodified 1421.5987 0.59869079 1639;1563 Q9Y2W1;Q9NYF8-2;Q9NYF8;Q9NYF8-4;H0YF14 THRAP3;BCLAF1 Thyroid hormone receptor-associated protein 3;Bcl-2-associated transcription factor 1 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 119.44 109.18 2 3.2138E-127 7 76975 20150910_Q1_SA_NiHu_Masterprac_group15_C 160.77 150.58 32242000 5943300 4896200 3125100 3255600 7971300 7051000 1773 1639;1563 1750 7908;7909;7910;7911;7912;7913;7914 5290;5291;5292;5293;5294;5295;5296 5294 7 EEEWDPEYTPKSK Unmodified 1636.7257 0.72568222 1639;1563 Q9Y2W1;Q9NYF8-2;Q9NYF8;Q9NYF8-4;H0YF14 THRAP3;BCLAF1 Thyroid hormone receptor-associated protein 3;Bcl-2-associated transcription factor 1 no no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 2 2 1 1 101.24 91.451 2;3 0.016894 2 62056 20150910_Q1_SA_NiHu_Masterprac_group10_C 50.659 22.983 32752000 10711000 4293400 9422100 0 8325500 0 1774 1639;1563 1751 7915;7916;7917;7918;7919;7920 5297;5298 5297 2 EEFEHQQKELEK Unmodified 1572.742 0.74200098 824 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 58.409 50.613 3 0.0057656 2 41631 20150910_Q1_SA_NiHu_Masterprac_group13_C 63.694 39.983 3836600 0 1054400 696680 0 285380 1800100 1775 824 1752 7921;7922;7923;7924 5299;5300 5299 2 EEFLTGTEK Unmodified 1052.5026 0.50260556 1545 Q9NUA8;B1AKC8 ZBTB40 Zinc finger and BTB domain-containing protein 40 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 80.117 79.39 2 0.011969 2 54702 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.287 50.757 4513900 0 0 0 1336800 0 3177000 1776 1545 1753 7925;7926 5301;5302 5302 2 EEGETADTVGCCSLR Unmodified 1682.6876 0.68759893 825 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 95.854 79.611 2 0.018938 1 59839 20150910_Q1_SA_NiHu_Masterprac_group15_C 43.05 43.05 919040 0 0 0 0 919040 0 1777 825 1754 7927 5303 5303 1 EEHIYPTIIGTER Unmodified 1556.7835 0.78347187 511 F5H1S9;G8JLB3;Q9Y606-2;Q9Y606 PUS1 tRNA pseudouridine synthase;tRNA pseudouridine synthase A, mitochondrial yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 130.52 125.56 3 0.028936 1 85313 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.03 6.3989 4787600 0 0 0 0 0 4787600 1778 511 1755 7928 5304 5304 1 EEHKLQDSVPENKGISLR Unmodified 2078.0756 0.075631144 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 99.725 91.597 3;4 9.2569E-05 9 61515 20150910_Q1_SA_NiHu_Masterprac_group10_B 83.894 72.576 121230000 6351500 23296000 14338000 5216700 22090000 49938000 1779 919;920 1756 7929;7930;7931;7932;7933;7934;7935;7936;7937;7938;7939;7940 5305;5306;5307;5308;5309;5310;5311;5312;5313 5311 9 EEIAFSDPTPDGK Unmodified 1404.6409 0.64088996 1180 Q5FWF5 ESCO1 N-acetyltransferase ESCO1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 2 115.7 107.32 2 0.0019351 8 72035 20150910_Q1_SA_NiHu_Masterprac_group10_C 72.891 45.247 11621000 1987900 1911600 908060 502570 2494800 3816400 1780 1180 1757 7941;7942;7943;7944;7945;7946;7947;7948;7949 5314;5315;5316;5317;5318;5319;5320;5321 5320 7 EEIDPDEEESAK Unmodified 1389.5783 0.57834928 1113 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 59.954 58.8 2 0.012185 1 41466 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.175 43.43 432810 0 0 0 0 0 432810 1781 1113 1758 7950 5322 5322 1 EEIEQSLTK Unmodified 1075.5397 0.53971935 1105 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 78.447 71.712 2 0.032422 1 49727 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.426 33.659 3948100 0 1075700 0 0 1136300 1736100 1782 1105 1759 7951;7952;7953 5323 5323 1 EEIKAENTTGNWLTAK Unmodified 1803.9003 0.90029254 1562 Q9NYD6 HOXC10 Homeobox protein Hox-C10 yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 121.79 113.98 3 1.0026E-11 4 75665 20150910_Q1_SA_NiHu_Masterprac_group10_C 99.238 87.788 19147000 4203300 2919200 7529300 1815800 0 2679100 1783 1562 1760 7954;7955;7956;7957;7958 5324;5325;5326;5327 5327 3 EEINKNISDFGR Unmodified 1420.6947 0.69465686 1507 Q9H9B1-3;Q9H9B1;Q9H9B1-4;C9JD67;Q9H9B1-2 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 100.46 94.267 3 0.0033239 1 62952 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.176 28.146 2004700 411280 1593400 0 0 0 0 1784 1507 1761 7959;7960 5328 5328 1 EEIPVQEKTPKK Unmodified 1424.7875 0.78749461 1369 Q96B01-2;Q96B01;Q96B01-3;F5H1Y0;H0YGT5;H0YFK6;F5H4V6;F5H031;F5H710 RAD51AP1 RAD51-associated protein 1 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 57.436 49.866 3 0.016963 2 35682 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.944 50.618 4322600 322150 991260 896810 0 599070 1513300 1785 1369 1762 7961;7962;7963;7964;7965 5329;5330 5330 2 EEISGSGTQPGGAKEETK Unmodified 1803.8487 0.8486509 1373 Q96C00 ZBTB9 Zinc finger and BTB domain-containing protein 9 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 45.211 39.855 3 0.00092108 5 28281 20150910_Q1_SA_NiHu_Masterprac_group10_B 68.978 54.735 9828400 1826100 1389500 1401900 832500 1697700 2680600 1786 1373 1763 7966;7967;7968;7969;7970;7971 5331;5332;5333;5334;5335 5334 5 EEKDQDELKPGPTNR Unmodified 1754.8435 0.84350594 1097 Q14151 SAFB2 Scaffold attachment factor B2 yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 46.532 41.092 3;4 0.0021295 2 29273 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.507 54.685 25853000 3496500 1580800 4243500 3310100 6012200 7209700 1787 1097 1764 7972;7973;7974;7975;7976;7977;7978;7979;7980;7981;7982;7983 5336;5337 5337 2 EELAEAEIIK Unmodified 1143.6023 0.60231961 110 B4DNK1;Q9NVM9;F5GZE7;H0YH12 ASUN Protein asunder homolog yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 1 119.14 117.57 2 0.0026717 3 80009 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.973 47.248 4495200 0 1449800 0 435500 0 2609900 1788 110 1765 7984;7985;7986;7987 5338;5339;5340 5338 3 EELEHPGVEHFKEEDKLK Unmodified 2192.075 0.074962442 1353 Q92576-2;Q92576;E7EVH3;E9PE34;B3KP41;D6R9X2 PHF3 PHD finger protein 3 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 87.704 86.776 3 0.0099206 1 59443 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.376 37.745 1681900 0 0 0 136710 0 1545100 1789 1353 1766 7988;7989 5341 5341 1 EELEQASQAHGAR Unmodified 1424.6644 0.66441937 1121 Q14980-2;Q14980;F5H4J1;F5H6Y5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 46.137 40.335 2;3 0.0010855 10 28655 20150910_Q1_SA_NiHu_Masterprac_group10_B 76.24 52.169 42436000 5829900 6436000 7048400 2211900 10102000 10808000 1790 1121 1767 7990;7991;7992;7993;7994;7995;7996;7997;7998;7999;8000 5342;5343;5344;5345;5346;5347;5348;5349;5350;5351 5349 10 EELEQTYHAK Unmodified 1246.583 0.58298115 406 E9PBF6;P20700 LMNB1 Lamin-B1 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 2 52.907 47.66 2;3 0.0042247 5 34172 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.134 45.416 6354500 1030100 1419300 2098000 224050 0 1583100 1791 406 1768 8001;8002;8003;8004;8005;8006;8007;8008;8009 5352;5353;5354;5355;5356 5353 5 EELGFRPEYSASQLK Unmodified 1752.8683 0.86826413 815 P09874;F8WC10 PARP1 Poly [ADP-ribose] polymerase 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 130.78 127.99 3 0.0042333 2 83224 20150910_Q1_SA_NiHu_Masterprac_group10_B 54.951 7.329 12846000 0 5512700 0 0 0 7332800 1792 815 1769 8010;8011 5357;5358 5358 1 EELHQDCLVLATAK Unmodified 1625.8083 0.80830641 1338 Q8TEQ6 GEMIN5 Gem-associated protein 5 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 2 1 1 1 117.56 108.31 3 0.0009228 5 76523 20150910_Q1_SA_NiHu_Masterprac_group15_C 71.513 50.731 7273800 1123700 1173000 942390 367310 1273400 2394100 1793 1338 1770 8012;8013;8014;8015;8016;8017;8018 5359;5360;5361;5362;5363 5361 5 EELKQIQEER Unmodified 1300.6623 0.6622941 378 O15042-2;E7ET15;O15042;E7EW00;H0Y8D9 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 62.371 58.326 3 0.026392 1 41052 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.067 30.11 2619300 300390 835630 0 0 0 1483300 1794 378 1771 8019;8020;8021 5364 5364 1 EELLAVGK Unmodified 857.48583 0.48583328 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 2 2 2 100.2 92.116 1;2 0.0058315 5 62074 20150910_Q1_SA_NiHu_Masterprac_group10_B 95.741 18.001 287070000 21592000 57311000 35996000 16943000 39966000 115260000 1795 919;920 1772 8022;8023;8024;8025;8026;8027;8028;8029;8030;8031;8032;8033 5365;5366;5367;5368;5369 5368 5 EELLAVGKFTR Unmodified 1261.703 0.7030367 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 2 1 1 131.45 127.07 2;3 0.0051062 5 83653 20150910_Q1_SA_NiHu_Masterprac_group10_B 91.469 78.512 122240000 20755000 61926000 0 8126500 0 31435000 1796 919;920 1773 8034;8035;8036;8037;8038 5370;5371;5372;5373;5374 5372 5 EELLAVGKLTQTSGETTHTDKEPVGEGK Unmodified 2953.488 0.48802471 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 130.7 113.86 4 1.3889E-29 2 81215 20150910_Q1_SA_NiHu_Masterprac_group13_C 84.159 74.597 14105000 6640700 0 7464000 0 0 0 1797 919;920 1774 8039;8040 5375;5376 5375 1 EELLAVGKLTQTSGETTHTHTEPTGDGK Unmodified 2936.4363 0.43632349 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 121.66 113.85 4 1.6913E-24 4 80438 20150910_Q1_SA_NiHu_Masterprac_group13_C 83.059 74.132 49134000 13693000 3944700 27482000 3217600 0 796490 1798 919;920 1775 8041;8042;8043;8044;8045 5377;5378;5379;5380 5378 4 EELMSSDLEETAGSTSIPK Unmodified 2022.9303 0.93033162 692 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 132.83 132.83 2 2.4854E-38 1 85856 20150910_Q1_SA_NiHu_Masterprac_group13_B 111.65 85.571 3700600 0 0 0 3700600 0 0 1799 692 1776 8046 5381 5381 1 EELNSSVAIADTALEDRKNK Unmodified 2202.1128 0.11280451 1302 Q8N5C6 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 0 0 2 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 130.94 116.84 3;4 3.9686E-38 8 85122 20150910_Q1_SA_NiHu_Masterprac_group15_B 110.74 76.863 211450000 56690000 0 66721000 0 29085000 58951000 1800 1302 1777 8047;8048;8049;8050;8051;8052;8053;8054 5382;5383;5384;5385;5386;5387;5388;5389 5385 7 EELQANGSAPAADK Unmodified 1399.6579 0.657937 886 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 57.72 51.227 2 0.0011055 6 41911 20150910_Q1_SA_NiHu_Masterprac_group13_C 77.192 60.927 7176600 672570 1359100 1115700 573090 657820 2798200 1801 886 1778 8055;8056;8057;8058;8059;8060 5390;5391;5392;5393;5394;5395 5392 6 EELRLEEAK Unmodified 1115.5823 0.58225287 170 Q86YP4;B5MC40;Q86YP4-2;B4DKZ7;C9JHD7;C9JJK9 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 67.983 65.9 2 0.02884 1 45867 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.647 16.727 8711500 0 2515800 0 0 0 6195700 1802 170 1779 8061;8062 5396 5396 1 EELSAVER Unmodified 931.46108 0.4610751 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 63.931 58.506 2 0.008839 2 41266 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.143 10.838 12933000 1449800 3086600 2772200 468430 0 5155900 1803 919;920 1780 8063;8064;8065;8066;8067 5397;5398 5398 2 EELSAVERLTQTSGQSTHTHKEPASGDEGIK Unmodified 3321.6073 0.607305 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 2 2 1 3 115.36 107.28 4;5 5.8632E-25 4 73607 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.027 64.066 64237000 3422300 880310 18096000 4746800 1946200 35145000 1804 919;920 1781 8068;8069;8070;8071;8072;8073;8074;8075;8076;8077 5399;5400;5401;5402 5401 2 EELSEEGYLAK Unmodified 1266.598 0.59796251 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 106.96 98.278 2 3.4112E-05 3 65419 20150910_Q1_SA_NiHu_Masterprac_group10_B 102.53 58.106 9378200 647580 1844500 0 0 1239700 5646400 1805 487 1782 8078;8079;8080;8081 5403;5404;5405 5405 3 EELSEEGYLAKVK Unmodified 1493.7613 0.76133944 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 119.52 111.47 3 0.0011626 2 72890 20150910_Q1_SA_NiHu_Masterprac_group10_B 90.434 71.148 6118000 0 1497600 3675100 0 0 945350 1806 487 1783 8082;8083;8084 5406;5407 5407 2 EELVEMCNGK Unmodified 1207.5213 0.52130887 1188 Q5T200-2;Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 83.704 82.149 2 0.027035 1 56309 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.592 44.863 1585500 0 0 0 0 0 1585500 1807 1188 1784 8085 5408 5408 1 EENAEQAESTEVSSSGISISKTPIMK Unmodified 2751.312 0.31203418 1604 Q9UKY1 ZHX1 Zinc fingers and homeoboxes protein 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.66 131.05 3 2.4269E-250 1 84505 20150910_Q1_SA_NiHu_Masterprac_group10_B 157.7 134.41 18035000 0 18035000 0 0 0 0 1808 1604 1785 8086 5409 5409 1 EENLFSWKGAK Unmodified 1307.651 0.65100113 904 P38432 COIL Coilin yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 2 131.29 122.07 2;3 0.003254 3 85876 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.862 47.437 13693000 0 0 0 0 2178900 11514000 1809 904 1786 8087;8088;8089 5410;5411;5412 5411 3 EENMDTSNTSISK Unmodified 1454.6195 0.61950259 327 D6RFF0;H0YA82;Q4G0J3 LARP7 La-related protein 7 yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 60.303 52.306 2 0.0033528 3 42673 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.727 50.626 1752700 0 259830 391580 0 424880 676450 1810 327 1787 8090;8091;8092;8093 5413;5414;5415 5415 3 EENVCCMYSAEK Unmodified 1518.5789 0.5789001 1562 Q9NYD6 HOXC10 Homeobox protein Hox-C10 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 93.15 85.61 2 0.002394 4 58560 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.78 71.203 13972000 0 2536300 2601600 1708100 1211300 5915000 1811 1562 1788 8094;8095;8096;8097;8098 5416;5417;5418;5419 5417 2 EEPAAAGSGAASPSAAEKGEPAAAAAPEAGASPVEK Unmodified 3203.5218 0.52184404 886 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 116.77 98.871 3 0.0027205 1 72711 20150910_Q1_SA_NiHu_Masterprac_group13_C 25.604 19.115 1116500 0 0 1116500 0 0 0 1812 886 1789 8099 5420 5420 1 EEPADFPVEQPEEN Unmodified 1628.6842 0.68421133 1177 Q5BKZ1;Q5BKZ1-3 ZNF326 DBIRD complex subunit ZNF326 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 129.83 119.65 2 0.0012837 2 84965 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.297 70.551 11375000 0 0 5430200 483980 1309300 4151600 1813 1177 1790 8100;8101;8102;8103 5421;5422 5422 2 EEPCGSLSETVCK Unmodified 1494.633 0.63304416 1218 Q68DK7;Q68DK7-3;Q68DK7-2 MSL1 Male-specific lethal 1 homolog yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 1 1 1 1 1 92.833 84.783 2 0.011303 3 57811 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.199 38.259 9955000 1644600 2093700 1424000 631570 1455100 2706000 1814 1218 1791 8104;8105;8106;8107;8108;8109;8110 5423;5424;5425 5423 2 EEPLAVSK Unmodified 871.4651 0.46509784 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 60.64 55.396 2 0.003853 3 44811 20150910_Q1_SA_NiHu_Masterprac_group13_C 109.48 45.214 43491000 2539400 12166000 22061000 1494500 0 5230900 1815 919;920 1792 8111;8112;8113;8114;8115 5426;5427;5428 5426 3 EEPLAVSKLTR Unmodified 1241.698 0.69795133 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 105.66 97.701 3 0.0034151 2 72068 20150910_Q1_SA_NiHu_Masterprac_group13_C 83.081 53.314 8990700 0 2935200 3027800 2043400 335910 648380 1816 919;920 1793 8116;8117;8118;8119;8120 5429;5430 5429 2 EEPLSEEEPCTSTAIASPEK Unmodified 2202.9838 0.98382375 1640 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 130.57 114.88 2 8.2439E-18 1 76181 20150910_Q1_SA_NiHu_Masterprac_group10_C 98.175 89.645 3011500 3011500 0 0 0 0 0 1817 1640 1794 8121 5431 5431 1 EEPQTVPEAR Unmodified 1154.5568 0.5567664 848 P17275 JUNB Transcription factor jun-B yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 2 1 59.586 51.982 2 0.030463 2 42303 20150910_Q1_SA_NiHu_Masterprac_group15_C 57.174 24.443 9465700 0 1346700 1447600 1046200 2589800 3035400 1818 848 1795 8122;8123;8124;8125;8126;8127 5432;5433 5433 2 EEPSQNDISPKTK Unmodified 1471.7155 0.71545188 1534 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 51.918 45.45 3 0.00030582 2 34425 20150910_Q1_SA_NiHu_Masterprac_group10_C 87.831 57.808 1134300 0 0 0 521780 612520 0 1819 1534 1796 8128;8129;8130 5434;5435 5435 2 EEPTESQGLAAR Unmodified 1286.6103 0.61025853 446 Q9P1Y6-2;E9PJ24;F8WEF5;Q9P1Y6-3;Q9P1Y6 PHRF1 PHD and RING finger domain-containing protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 65.491 57.018 2 0.0018287 2 40383 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.182 53.178 2839200 0 607460 347870 0 666450 1217400 1820 446 1797 8131;8132;8133;8134 5436;5437 5436 2 EEPVEEAEEEAPEASTAPKEAGPSK Unmodified 2610.1821 0.18206587 1607 Q9ULJ3-2;Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 120.63 102.74 3 0.031714 1 74856 20150910_Q1_SA_NiHu_Masterprac_group13_C 30.976 22.959 1192500 0 0 1192500 0 0 0 1821 1607 1798 8135 5438 5438 1 EEPVIVTPPTK Unmodified 1208.6653 0.66525421 1286 Q8IX90-3;Q8IX90 SKA3 Spindle and kinetochore-associated protein 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 110.98 102 2 0.0035513 2 67517 20150910_Q1_SA_NiHu_Masterprac_group10_B 81.92 65.542 3569800 767110 797820 703270 0 0 1301600 1822 1286 1799 8136;8137;8138;8139 5439;5440 5440 1 EEPVNVNIPEK Unmodified 1266.6456 0.6455814 1228 Q6PCB5-2;Q6PCB5 RSBN1L Round spermatid basic protein 1-like protein yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 109.36 103.05 2 0.019417 2 69292 20150910_Q1_SA_NiHu_Masterprac_group10_C 56.205 43.197 4288300 1454700 969860 0 0 0 1863700 1823 1228 1800 8140;8141;8142 5441;5442 5442 2 EEPWDHTEK Unmodified 1169.4989 0.49891717 535 Q96RL1;F8VQY2;Q96RL1-3;F2Z2T8;Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 72.892 62.064 2 0.016108 2 50001 20150910_Q1_SA_NiHu_Masterprac_group13_C 74.165 40.902 4330600 0 0 1456800 0 788180 2085600 1824 535 1801 8143;8144;8145 5443;5444 5443 2 EEQLSSYEDK Unmodified 1226.5303 0.53027687 1362 Q92878-2;Q92878;Q92878-3;E7EN38 RAD50 DNA repair protein RAD50 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 69.268 62.169 2 2.8681E-09 5 43689 20150910_Q1_SA_NiHu_Masterprac_group15_B 117.14 104.87 7874900 0 1720400 1516700 284480 1458300 2895000 1825 1362 1802 8146;8147;8148;8149;8150 5445;5446;5447;5448;5449 5447 5 EEQPTGPPAESR Unmodified 1296.5946 0.59460847 517 F5H4P2;Q6GQQ9 OTUD7B OTU domain-containing protein 7B yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 48.293 43.797 2 0.0039872 1 31441 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.538 36.77 912380 0 0 0 132150 180050 600180 1826 517 1803 8151;8152;8153 5450 5450 1 EERAHLKEPPPAASK Unmodified 1658.874 0.87401821 1434 Q99958 FOXC2 Forkhead box protein C2 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 40.259 35.32 3;4 0.001696 3 28807 20150910_Q1_SA_NiHu_Masterprac_group13_C 72.815 25.936 17462000 3059500 3791100 1493000 3098800 2608900 3410700 1827 1434 1804 8154;8155;8156;8157;8158;8159 5451;5452;5453 5451 3 EERIDTPPACTEESIATPSEIK Unmodified 2472.169 0.16899876 758 O94913 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 129.94 129.34 3 8.0497E-06 1 82798 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.985 48.131 3221600 0 3221600 0 0 0 0 1828 758 1805 8160 5454 5454 1 EESAASGGAAYTK Unmodified 1240.5572 0.55716033 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 41.419 35.176 2 0.035405 1 24888 20150910_Q1_SA_NiHu_Masterprac_group10_B 42.797 29.104 2411300 0 442350 1968900 0 0 0 1829 1639 1806 8161;8162 5455 5455 1 EESAASGGAAYTKR Unmodified 1396.6583 0.65827136 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 39.013 34.075 3 0.0068406 1 27381 20150910_Q1_SA_NiHu_Masterprac_group13_C 48.527 26.856 1013900 0 0 894570 119340 0 0 1830 1639 1807 8163;8164 5456 5456 1 EESAHWVTHTSYCF Unmodified 1752.7202 0.72021968 38 Q9BY42;A8MSH5 RTFDC1 Protein RTF2 homolog yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 131.22 130.92 3 0.011455 2 83979 20150910_Q1_SA_NiHu_Masterprac_group10_B 48.115 41.988 20631000 0 8487500 0 12143000 0 0 1831 38 1808 8165;8166 5457;5458 5458 2 EESIVSSLRLAYK Unmodified 1493.809 0.80895834 276 H0Y6A0;C9JZR4;E9PB03;Q9NP61 ARFGAP3 ADP-ribosylation factor GTPase-activating protein 3 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 133.58 133.58 3 0.0022759 1 86640 20150910_Q1_SA_NiHu_Masterprac_group13_B 67.879 40.874 6505400 0 0 0 6505400 0 0 1832 276 1809 8167 5459 5459 1 EESLQQNVGQEEAEIK Unmodified 1829.8643 0.86430096 25 G3V3V0;Q8IXJ9-2;E7EPD6;A6NIZ6;Q8IXJ9 ASXL1 Putative Polycomb group protein ASXL1 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 129.42 113.73 2 0.0041734 1 75151 20150910_Q1_SA_NiHu_Masterprac_group10_C 51.76 29.222 711140 711140 0 0 0 0 0 1833 25 1810 8168 5460 5460 1 EESSELEQPFAQDTSSVGPDRK Unmodified 2435.1088 0.10884135 1097;1137 Q14151;A8MXT5;C9JPX0;Q15424;F5H1L1;F5H0H3;F5GZU3;B7Z2F6 SAFB2;SAFB Scaffold attachment factor B2;Scaffold attachment factor B1 no no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 126.7 117.22 3 1.7615E-33 4 76753 20150910_Q1_SA_NiHu_Masterprac_group10_C 101.38 93.306 22543000 7629100 2617400 5853200 1426700 2520200 2496700 1834 1097;1137 1811 8169;8170;8171;8172;8173;8174 5461;5462;5463;5464 5464 4 EESTEVLKAQSAGTVR Unmodified 1703.869 0.86899241 375 G5E9D3;P20810-5;E7ESM9;P20810-7;P20810-6;B7Z468;F8W7E0;H0Y7F0;P20810-3;E9PDE4;E7ES10;P20810-4;E9PCH5;G5E946;B7Z574;P20810-2;P20810;H0Y9H6;E7EVY3;H0YA91 CAST Calpastatin yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 1 1 2 1 1 85.984 79.179 3 7.1495E-07 4 54016 20150910_Q1_SA_NiHu_Masterprac_group13_B 91.076 77.129 36906000 8600000 4067900 7553800 5873200 6308100 4503200 1835 375 1812 8175;8176;8177;8178;8179;8180;8181;8182 5465;5466;5467;5468 5465 4 EESTEVLKAQSAGTVRSAAPPQEK Unmodified 2512.2769 0.27690973 375 G5E9D3;P20810-5;E7ESM9;P20810-7;P20810-6;B7Z468;F8W7E0;H0Y7F0;P20810-3;E9PDE4;E7ES10;P20810-4;E9PCH5;G5E946;B7Z574;P20810-2;P20810;H0Y9H6;E7EVY3;H0YA91 CAST Calpastatin yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 95.984 89.583 4 0.023938 1 67510 20150910_Q1_SA_NiHu_Masterprac_group13_C 32.576 19.209 7057400 0 1610700 2805400 2641300 0 0 1836 375 1813 8183;8184;8185 5469 5469 1 EESTTGNANLLEK Unmodified 1404.6733 0.67325272 27 F5H101;Q76FK4-2;Q76FK4-4;A6NJK7;Q76FK4;F8WE42;F5GWN9;F5H540;F5H797;F5H8B8;F5H692;F5H7D5 NOL8 Nucleolar protein 8 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 83.864 76.464 2 0.0015176 2 52769 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.102 48.349 3617800 0 851920 785570 382900 755920 841490 1837 27 1814 8186;8187;8188;8189;8190 5470;5471 5470 2 EETEGETEYKFEWQK Unmodified 1931.8425 0.84250289 1270 Q86X95-2;Q86X95 CIR1 Corepressor interacting with RBPJ 1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 131.3 115.61 3 0.0024714 1 76907 20150910_Q1_SA_NiHu_Masterprac_group10_C 59.709 41.475 3842500 3842500 0 0 0 0 0 1838 1270 1815 8191 5472 5472 1 EETVNDPEEAGHR Unmodified 1481.6383 0.63826419 692 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 41.902 41.049 3 0.0042879 1 29225 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.11 42.533 845550 0 0 0 0 0 845550 1839 692 1816 8192 5473 5473 1 EETVNDPEEAGHRSGSK Unmodified 1840.8187 0.81874776 692 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 1 2 36.635 32.533 3;4 0.0015231 5 26223 20150910_Q1_SA_NiHu_Masterprac_group13_C 69.431 56.012 32906000 7614100 4762800 4093500 4158800 5476200 6800700 1840 692 1817 8193;8194;8195;8196;8197;8198;8199;8200;8201;8202;8203 5474;5475;5476;5477;5478 5474 5 EEVAYDPEDETILEEAK Unmodified 1978.8895 0.88951266 1447 Q9BTC0 DIDO1 Death-inducer obliterator 1 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 133.34 133.04 2 1.9118E-209 2 86270 20150910_Q1_SA_NiHu_Masterprac_group10_B 162.26 137.14 61155000 0 50007000 0 11148000 0 0 1841 1447 1818 8204;8205 5479;5480 5480 2 EEVEEVLDSK Unmodified 1175.5558 0.55576334 39 Q7Z5J4-3;E7EVZ3;Q7Z5J4;A8MTC3;Q7Z5J4-2;C9JWB0;A8MXE8;Q7Z5J4-4;E7ETW1 RAI1 Retinoic acid-induced protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 99.262 97.706 2 0.0097058 2 65043 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.229 49.113 4727400 0 2750000 0 172490 0 1804800 1842 39 1819 8206;8207;8208 5481;5482 5482 2 EEVEHMIQK Unmodified 1141.5438 0.54375887 184 B7Z367;Q9UL40;D6RJ07;B7Z6B6;B7Z6Q2 ZNF346 Zinc finger protein 346 yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 70.229 60.019 2 0.0078535 2 48663 20150910_Q1_SA_NiHu_Masterprac_group13_C 97.635 58.088 2343800 0 0 626800 246940 1470000 0 1843 184 1820 8209;8210;8211 5483;5484 5483 2 EEVEVAQVQVPTPAR Unmodified 1650.8577 0.85769944 1248 Q7Z2T5 TRMT1L TRMT1-like protein yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 131.54 129.69 2 1.1962E-86 4 84136 20150910_Q1_SA_NiHu_Masterprac_group10_B 138.81 104.33 17953000 0 8086600 0 1477500 0 8388500 1844 1248 1821 8212;8213;8214 5485;5486;5487;5488 5488 4 EEVLPVGK Unmodified 869.48583 0.48583328 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 87.999 79.328 2 0.023409 1 54803 20150910_Q1_SA_NiHu_Masterprac_group10_C 77.058 44.587 638290 638290 0 0 0 0 0 1845 919;920 1822 8215 5489 5489 1 EEVPMCSDAESR Unmodified 1408.5599 0.55987922 474 F2Z2E1;Q96EK7;F5GZX9;F5GY05;Q96EK7-2 FAM120B Constitutive coactivator of peroxisome proliferator-activated receptor gamma yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 76.469 69.767 2 0.0032457 1 48298 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.268 50.953 1986000 0 632800 0 0 264010 1089200 1846 474 1823 8216;8217;8218 5490 5490 1 EEVVLLTHGDSVDK Unmodified 1539.7781 0.77805214 129 F8W720;B4DUT7;P49915 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 112.05 103.74 2;3 1.0952E-70 8 70850 20150910_Q1_SA_NiHu_Masterprac_group15_B 136.6 97.93 58761000 7491400 14032000 9586000 5538600 5658700 16454000 1847 129 1824 8219;8220;8221;8222;8223;8224;8225;8226;8227;8228;8229 5491;5492;5493;5494;5495;5496;5497;5498 5495 7 EEWDARQSIIR Unmodified 1401.7001 0.70007659 1214 Q66PJ3;F5GYV5;H7BZV4;B3V0L1;F8WCT1;F5H7X4;Q66PJ3-4;Q66PJ3-3;Q66PJ3-2 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 113.06 106.91 3 0.018355 1 73192 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.149 36.834 5789100 894630 0 0 709690 0 4184800 1848 1214 1825 8230;8231;8232 5499 5499 1 EEYQLVQVEQK Unmodified 1391.6933 0.69325988 1534 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 113.18 105.83 2 0.0033559 4 70980 20150910_Q1_SA_NiHu_Masterprac_group10_C 83.045 66.426 5550000 850510 527940 0 640340 1676100 1855000 1849 1534 1826 8233;8234;8235;8236;8237 5500;5501;5502;5503 5503 4 EFAAALTAER Unmodified 1077.5455 0.54547343 1149 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 EZH2 Histone-lysine N-methyltransferase EZH2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 116.93 105.2 2 0.019424 1 72054 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.103 42.417 4644200 377350 0 0 0 1882700 2384100 1850 1149 1827 8238;8239;8240 5504 5504 1 EFAAGYNVK Unmodified 997.4869 0.48689592 902 P36969-2;P36969 GPX4 Phospholipid hydroperoxide glutathione peroxidase, mitochondrial yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 90.486 82.774 2 0.032183 1 56578 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.534 46.863 26709000 2758900 4289400 2462600 4800400 7525600 4872400 1851 902 1828 8241;8242;8243;8244;8245;8246 5505 5505 1 EFEDDLVK Unmodified 993.46549 0.46549177 709 O43148;O43148-2 RNMT mRNA cap guanine-N7 methyltransferase yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 110.02 101.11 2 0.014854 2 67215 20150910_Q1_SA_NiHu_Masterprac_group10_B 87.181 28.264 7134800 771930 2052500 801920 0 0 3508400 1852 709 1829 8247;8248;8249;8250 5506;5507 5507 2 EFEEESKQPGVSEQQR Unmodified 1905.8704 0.87044898 754 O94776 MTA2 Metastasis-associated protein MTA2 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 70.962 62.088 3 0.0015114 2 50179 20150910_Q1_SA_NiHu_Masterprac_group13_C 76.156 50.626 27756000 0 7363300 4693300 0 195690 15503000 1853 754 1830 8251;8252;8253;8254 5508;5509 5508 2 EFEEESKQPGVSEQQRHQLK Unmodified 2412.167 0.16696535 754 O94776 MTA2 Metastasis-associated protein MTA2 yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 3 2 1 3 69.637 62.958 3;4;5 4.8452E-27 5 43917 20150910_Q1_SA_NiHu_Masterprac_group15_B 106.35 75.643 53341000 0 10734000 6119800 0 994190 35493000 1854 754 1831 8255;8256;8257;8258;8259;8260;8261;8262;8263 5510;5511;5512;5513;5514 5512 5 EFLMNTLNQSDTKTSK Unmodified 1855.8986 0.89857798 758 O94913;E9PKN0;E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 131.4 115.72 3 2.4576E-11 1 76976 20150910_Q1_SA_NiHu_Masterprac_group10_C 96.489 72.589 3781000 3781000 0 0 0 0 0 1855 758 1832 8264 5515 5515 1 EFNPTKPLLSVNK Unmodified 1485.8191 0.81912909 36 Q8WWM7-6;Q8WWM7-5;Q8WWM7-4;A8K1R6;Q8WWM7-2;Q63ZY4;H3BUF6;Q8WWM7;Q8WWM7-3 ATXN2L Ataxin-2-like protein yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 131.27 131.27 3 0.020436 1 84263 20150910_Q1_SA_NiHu_Masterprac_group13_B 48.532 29.802 2729100 0 0 0 2729100 0 0 1856 36 1833 8265 5516 5516 1 EFREISYLK Unmodified 1183.6237 0.62372375 815 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 118.69 110.51 2 0.024671 1 75644 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.568 49.215 23921000 0 2901200 4929500 5114100 690920 10285000 1857 815 1834 8266;8267;8268;8269;8270 5517 5517 1 EFRGLGDCLVK Unmodified 1292.6547 0.6547063 795;826 P12236;P05141 SLC25A6;SLC25A5 ADP/ATP translocase 3;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed no no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 125.17 117.32 3 0.0042239 2 76684 20150910_Q1_SA_NiHu_Masterprac_group13_B 78.513 56.485 21794000 20049000 0 0 1745700 0 0 1858 826;795 1835 8271;8272 5518;5519 5518 2 EFSLHHSQVPTVN Unmodified 1493.7263 0.72629134 1433 Q99811 PRRX2 Paired mesoderm homeobox protein 2 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 109.85 104.11 3 0.0013884 2 71180 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.911 70.341 3027500 0 336100 1020700 301360 0 1369400 1859 1433 1836 8273;8274;8275;8276 5520;5521 5521 2 EFSSESGVKYHILK Unmodified 1622.8304 0.83042206 1402 Q96KM6 ZNF512B Zinc finger protein 512B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 2 2 109.15 99.523 3;4 0.0013395 7 67968 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.17 48.256 25033000 2024700 3426400 3962000 1051800 4727900 9840200 1860 1402 1837 8277;8278;8279;8280;8281;8282;8283;8284;8285;8286;8287 5522;5523;5524;5525;5526;5527;5528 5524 7 EFTDHQETQAELQK Unmodified 1702.7798 0.77984305 54 Q9NSV4-6;A8MYX0;Q9NSV4-5;C9JL55;Q9NSV4-4;C9JDG1;Q9NSV4;C9JDG0;Q9NSV4-1;A6NG52;Q9NSV4-7;Q9NSV4-2;F8W838 DIAPH3 Protein diaphanous homolog 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 74.46 68.578 3 0.00092213 2 47698 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.877 62.234 4074300 0 0 1433700 1075200 0 1565400 1861 54 1838 8288;8289;8290 5529;5530 5529 2 EGAEEIDRHVER Unmodified 1438.6801 0.68006943 1203 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 2 1 57.139 49.736 3 0.023115 3 34847 20150910_Q1_SA_NiHu_Masterprac_group13_B 50.791 36.36 120680000 0 16905000 12241000 8986400 36177000 46370000 1862 1203 1839 8291;8292;8293;8294;8295;8296 5531;5532;5533 5531 3 EGAFSNFPISEETIK Unmodified 1667.8043 0.80426689 1534;515 Q9NR30;Q9NR30-2;F5H3H6;Q9BQ39 DDX21;DDX50 Nucleolar RNA helicase 2;ATP-dependent RNA helicase DDX50 no no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 133.52 115.68 2 0.00017507 1 82605 20150910_Q1_SA_NiHu_Masterprac_group15_C 87.447 55.533 347500000 0 0 0 0 347500000 0 1863 1534;515 1840 8297 5534 5534 1 EGAIQGNTWEKPK Unmodified 1456.731 0.73104237 1667 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 2 1 1 1 72.988 63.232 3 0.0041401 1 51130 20150910_Q1_SA_NiHu_Masterprac_group13_C 62.694 17.033 8273200 0 0 2870300 771400 1345500 3286100 + 1864 1667 1841 8298;8299;8300;8301;8302 5535 5535 1 EGCQMDKEPSAVK Unmodified 1477.6541 0.65411395 1160 Q9ULU4-14;Q2HXV3;Q9ULU4-12;Q9ULU4-13;B7ZM62;H7C4X9;Q9ULU4-8;Q2HXV1;Q9ULU4-9;F8WAN7;Q9ULU4-5;Q9ULU4-10;Q9ULU4-7;E7ETU8;F5H0X3;Q9ULU4-4;Q9ULU4-3;Q9ULU4-6;H7C0U2;Q9ULU4;Q9ULU4-11;Q9ULU4-2 ZMYND8 Protein kinase C-binding protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 55.371 47.9 3 0.040114 1 34203 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.48 19.62 3540400 0 607150 423030 0 526790 1983400 1865 1160 1842 8303;8304;8305;8306 5536 5536 1 EGCTVSPETISLNVKGPGLQR Unmodified 2241.1423 0.1423305 336 O60313;E5KLK1;E5KLJ6;E5KLJ9;O60313-2;E5KLJ5 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 132.73 129.95 3 2.5296E-05 2 88015 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.276 43.847 34482000 0 17883000 0 0 0 16599000 1866 336 1843 8307;8308 5537;5538 5537 2 EGDIIPPLTGATPPLIGHLK Unmodified 2038.1463 0.14627689 1063 Q12888;Q12888-2;A6NNK5;F8VY86;H7C3N7 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 133.63 115.79 3 0.015966 1 82732 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.306 30.019 0 0 0 0 0 0 0 1867 1063 1844 8309 5539 5539 1 EGDVEEPTDDSLPTTGDAGGREPMEEK Unmodified 2860.2193 0.21925601 1602 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 114.44 110.38 3 2.4039E-06 1 75419 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.952 56.528 5383200 0 0 0 0 0 5383200 1868 1602 1845 8310 5540 5540 1 EGEDSSVIHYDDK Unmodified 1492.6318 0.63178183 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 1 2 2 78.356 70.179 2;3 1.2796E-46 5 55598 20150910_Q1_SA_NiHu_Masterprac_group13_C 127.78 108.5 93988000 0 27779000 15305000 483470 2834400 47586000 1869 486 1846 8311;8312;8313;8314;8315;8316;8317;8318;8319 5541;5542;5543;5544;5545 5541 5 EGEDSSVIHYDDKAIER Unmodified 1961.8967 0.89666373 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 101.45 94.165 3;4 5.3386E-08 6 64422 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.424 79.805 16747000 0 4084800 4829400 0 0 7832800 1870 486 1847 8320;8321;8322;8323;8324;8325 5546;5547;5548;5549;5550;5551 5548 6 EGEEEVPEIQEK Unmodified 1414.6464 0.64636926 1231 Q6PJG2;F6RU81 ELMSAN1 ELM2 and SANT domain-containing protein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 2 2 95.007 88.159 2 2.2757E-65 5 60149 20150910_Q1_SA_NiHu_Masterprac_group15_B 142.76 100.34 22575000 2811600 4019200 2680000 2028800 6469500 4565600 1871 1231 1848 8326;8327;8328;8329;8330;8331;8332;8333;8334;8335 5552;5553;5554;5555;5556 5554 4 EGEIYCKGCYAK Unmodified 1476.6377 0.63773561 1152 Q16527;F8VW96 CSRP2 Cysteine and glycine-rich protein 2 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 4 2 2 2 2 65.325 59.435 2;3 8.7407E-07 10 42162 20150910_Q1_SA_NiHu_Masterprac_group10_C 102.53 85.758 41344000 12195000 8964700 0 6682500 3668300 9833500 1872 1152 1849 8336;8337;8338;8339;8340;8341;8342;8343;8344;8345;8346;8347 5557;5558;5559;5560;5561;5562;5563;5564;5565;5566 5565 10 EGELCCSEAGQRPENIGQLEAK Unmodified 2474.1166 0.11658604 1335 Q8TD26 CHD6 Chromodomain-helicase-DNA-binding protein 6 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 118.99 108.84 3 0.0058524 2 71430 20150910_Q1_SA_NiHu_Masterprac_group10_B 43.848 31.93 5467700 0 1120200 2153200 0 588340 1606000 1873 1335 1850 8348;8349;8350;8351 5567;5568 5568 2 EGESGECAVAESEDR Unmodified 1623.6319 0.63185819 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 64.605 56.257 2 0.0005295 2 39631 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.615 64.3 2991200 0 949960 448240 0 558490 1034500 1874 1325 1851 8352;8353;8354;8355 5569;5570 5569 2 EGGEGFTVDTPAK Unmodified 1306.6041 0.60411052 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 98.198 90.152 2 7.5185E-24 6 61689 20150910_Q1_SA_NiHu_Masterprac_group15_B 113.76 91.195 17129000 1354100 4943400 2320200 1253700 2858100 4399400 1875 1325 1852 8356;8357;8358;8359;8360;8361;8362 5571;5572;5573;5574;5575;5576 5573 5 EGGGAIEEEAK Unmodified 1088.4986 0.49858282 539 Q8TAQ2-2;F8VTJ5;Q8TAQ2;F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 48.141 41.533 2 0.013986 2 33299 20150910_Q1_SA_NiHu_Masterprac_group13_C 60.167 27.416 2501400 303760 697310 1072400 0 82548 345440 1876 539 1853 8363;8364;8365;8366;8367 5577;5578 5577 2 EGGGAIEEEAKEK Unmodified 1345.6361 0.63613893 539 Q8TAQ2-2;F8VTJ5;Q8TAQ2;F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 2 1 2 2 2 49.282 43.984 2;3 5.4941E-35 8 33910 20150910_Q1_SA_NiHu_Masterprac_group10_C 124.48 70.885 37135000 6083700 5918100 6345100 3638300 4984500 10166000 1877 539 1854 8368;8369;8370;8371;8372;8373;8374;8375;8376;8377;8378;8379 5579;5580;5581;5582;5583;5584;5585;5586 5586 8 EGGSDLGMSGNSEPKK Unmodified 1591.7148 0.71479996 490 F5GXK1;P20585 MSH3 DNA mismatch repair protein Msh3 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 54.881 48.824 3 0.0026067 2 40219 20150910_Q1_SA_NiHu_Masterprac_group15_C 50.024 37.102 3845900 0 210080 694210 662760 1313600 965190 1878 490 1855 8380;8381;8382;8383;8384 5587;5588 5588 2 EGHWDCSICLVR Unmodified 1530.6708 0.67076707 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 130.91 130.31 3 0.00074902 1 83694 20150910_Q1_SA_NiHu_Masterprac_group10_B 92.943 73.266 6475600 0 6475600 0 0 0 0 1879 945 1856 8385 5589 5589 1 EGHWDCSICLVRNEPTVSR Unmodified 2314.0583 0.058283296 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 130.77 130.77 4 0.0038887 1 83757 20150910_Q1_SA_NiHu_Masterprac_group13_B 47.904 39.434 4250900 0 0 0 4250900 0 0 1880 945 1857 8386 5590 5590 1 EGICALGGTSELSSEGTQHSYSEEEK Unmodified 2784.2032 0.20321202 87 B7Z6M1;F8W8D8;B4DGB4;P13797 PLS3 Plastin-3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 127.6 124.81 3 0.0018165 1 79817 20150910_Q1_SA_NiHu_Masterprac_group10_B 46.273 42.151 4515900 0 2608800 0 0 0 1907100 1881 87 1858 8387;8388 5591 5591 1 EGIDSECGPFIK Unmodified 1350.6126 0.61256672 868 P23458 JAK1 Tyrosine-protein kinase JAK1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 122.89 121.06 2 0.0061915 1 77971 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.091 45.426 2933900 0 910730 0 201910 0 1821300 1882 868 1859 8389;8390;8391 5592 5592 1 EGIQWEAK Unmodified 959.47125 0.47124585 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 94.223 88.057 2 0.0073282 2 59715 20150910_Q1_SA_NiHu_Masterprac_group10_B 97.431 51.75 40713000 525310 11061000 10434000 358270 0 18334000 1883 486 1860 8392;8393;8394;8395;8396 5593;5594 5594 2 EGIVQTEQIR Unmodified 1171.6197 0.619701 131 B4DV47;Q6P1J9 CDC73 Parafibromin yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 93.626 86.055 2 0.018778 2 63593 20150910_Q1_SA_NiHu_Masterprac_group15_C 64.64 27.686 3427700 439900 724830 0 0 764920 1498100 1884 131 1861 8397;8398;8399;8400 5595;5596 5596 2 EGLASATKDCSHREEK Unmodified 1816.8374 0.83737471 1357 Q92766-3;Q92766;Q92766-2;Q92766-4 RREB1 Ras-responsive element-binding protein 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 2 2 2 1 2 35.206 31.25 3;4 0.0059205 2 21645 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.301 31.061 9721200 398960 2129100 2494500 1812800 525350 2360500 1885 1357 1862 8401;8402;8403;8404;8405;8406;8407;8408;8409;8410 5597;5598 5597 2 EGLLCQQQR Unmodified 1130.5502 0.55024123 1264 Q86UV5;Q86UV5-2;B7ZKS7;Q86UV5-5 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 66 63.917 2 1.8552E-07 2 44683 20150910_Q1_SA_NiHu_Masterprac_group15_B 118.5 80.939 2524000 0 579480 0 0 0 1944500 1886 1264 1863 8411;8412 5599;5600 5599 2 EGLSRQHVLTR Unmodified 1294.7106 0.7105817 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 no no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 57.656 51.655 3 0.024678 1 36896 20150910_Q1_SA_NiHu_Masterprac_group10_B 53.237 30.12 1952000 0 969620 0 0 160740 821690 1887 486 1864 8413;8414;8415 5601 5601 1 EGMEAAVEKQR Unmodified 1246.5976 0.59758535 146 Q9H0D6-2;B4DZC3;Q9H0D6 XRN2 5'-3' exoribonuclease 2 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 58.791 52.177 2;3 1.1298E-08 12 42880 20150910_Q1_SA_NiHu_Masterprac_group15_C 112.83 78.061 18511000 2197900 3474200 1527000 2007500 4498500 4806000 1888 146 1865 8416;8417;8418;8419;8420;8421;8422;8423;8424;8425;8426;8427;8428 5602;5603;5604;5605;5606;5607;5608;5609;5610;5611;5612;5613 5607 12 EGMEAAVEKQRVR Unmodified 1501.7671 0.7671103 146 Q9H0D6-2;B4DZC3;Q9H0D6 XRN2 5'-3' exoribonuclease 2 yes no 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 71.505 63.308 3 0.010004 2 44167 20150910_Q1_SA_NiHu_Masterprac_group13_B 63.944 48.003 6621900 0 0 1292800 1014400 1892900 2421800 1889 146 1866 8429;8430;8431;8432 5614;5615 5614 2 EGMNIVEAMER Oxidation (M) 1293.5693 0.56932169 999 P62937;B4DM82;Q567Q0 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 1 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 2 101.81 95.185 2 0.020769 2 77895 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.155 26.901 4065600 427410 696530 805190 845430 0 1291000 1890 999 1867 8433;8434;8435;8436;8437;8438 5616;5617 5617 117;118 2 EGMNIVEAMER Unmodified 1277.5744 0.57440707 999 P62937;B4DM82;Q567Q0 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 138.25 122.56 2 0.003415 1 83165 20150910_Q1_SA_NiHu_Masterprac_group10_C 82.705 51.976 10429000 10429000 0 0 0 0 0 1891 999 1867 8439 5618 5618 1 EGPAHEPKFQYCVAVGAQTFPSVSAPSK Unmodified 2988.444 0.44399183 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 132.9 126.7 4 1.3845E-207 4 85815 20150910_Q1_SA_NiHu_Masterprac_group13_B 146.15 134.34 203700000 0 78117000 60740000 64839000 0 0 1892 352;968 1868 8440;8441;8442 5619;5620;5621;5622 5620 4 EGPAHEPKFQYCVAVGAQTFPSVSAPSKK Unmodified 3116.539 0.53895485 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 2 1 132.25 123.42 4;5 7.8687E-63 8 82984 20150910_Q1_SA_NiHu_Masterprac_group13_C 103.33 85.946 229080000 25065000 33747000 83073000 78031000 9165000 0 1893 352;968 1869 8443;8444;8445;8446;8447;8448;8449;8450 5623;5624;5625;5626;5627;5628;5629;5630 5627 8 EGPSGSGDSQLSASSR Unmodified 1520.6703 0.6702926 1059 Q12789-3;Q12789;H7BYG6 GTF3C1 General transcription factor 3C polypeptide 1 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 55.467 49.225 2 0.0052794 2 37100 20150910_Q1_SA_NiHu_Masterprac_group10_C 49.537 34.344 22376000 1885800 3832400 3078500 910810 2477000 10191000 1894 1059 1870 8451;8452;8453;8454;8455;8456 5631;5632 5632 2 EGPSLGPPPVASALSR Unmodified 1533.8151 0.81510635 634 O75150-4;H3BP71;O75150;F8W8Z4;O75150-3 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 133.68 117.99 2 0.00074961 1 79519 20150910_Q1_SA_NiHu_Masterprac_group10_C 70.451 47.308 8839800 8839800 0 0 0 0 0 1895 634 1871 8457 5633 5633 1 EGQEILGPEAQADEAGCTVK Unmodified 2100.9634 0.96336308 415 F5H4I8;E9PCM7;F5H2R1;P37275;Q2KJ05;F5H1R1;H0YMN2;F6TDF5 ZEB1 Zinc finger E-box-binding homeobox 1 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 123.26 113.76 2 0.0049652 2 76006 20150910_Q1_SA_NiHu_Masterprac_group10_C 45.659 26.985 8620700 4171200 1167100 1710300 491270 445240 635720 1896 415 1872 8458;8459;8460;8461;8462;8463 5634;5635 5635 2 EGQESSSSAANTNPAVAPPCVVVEEKKPQLTQEELEAK Unmodified 4050.9692 0.96918333 522 Q12872;F5H6B8;F5H5X1 SFSWAP Splicing factor, suppressor of white-apricot homolog yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 131.6 122.52 4 1.1615E-55 3 84252 20150910_Q1_SA_NiHu_Masterprac_group10_B 81.735 74.388 44589000 0 14929000 18602000 8944200 2114100 0 1897 522 1873 8464;8465;8466;8467 5636;5637;5638 5638 3 EGQWDCSACLVQNEGSSTK Unmodified 2154.8946 0.89463159 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 124.83 113.47 2 6.0574E-171 6 75871 20150910_Q1_SA_NiHu_Masterprac_group10_C 150.91 143.67 35868000 15728000 4908900 7651800 0 4741700 2837900 1898 945 1874 8468;8469;8470;8471;8472 5639;5640;5641;5642;5643;5644 5644 6 EGQWDCSVCLVR Unmodified 1507.6548 0.65478266 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.24 131.64 2 0.020977 1 85083 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.088 57.386 2123700 0 2123700 0 0 0 0 1899 945 1875 8473 5645 5645 0 EGQWDCSVCLVRNEASATK Unmodified 2208.9892 0.98920068 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 131.91 124.07 3 0.00032203 2 78146 20150910_Q1_SA_NiHu_Masterprac_group10_C 72.207 52.037 13929000 6774100 0 0 7154600 0 0 1900 945 1876 8474;8475 5646;5647 5647 2 EGREQGTGNSYTDTSGPK Unmodified 1882.8293 0.82931244 1592 Q9UHB7;Q9UHB7-2 AFF4 AF4/FMR2 family member 4 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 46.123 40.683 3 0.0040062 4 34032 20150910_Q1_SA_NiHu_Masterprac_group15_C 48.555 39.081 6668800 1147300 936730 716010 664240 1447800 1756700 1901 1592 1877 8476;8477;8478;8479;8480;8481 5648;5649;5650;5651 5649 4 EGRNVYSSSRYDDYDR Unmodified 1980.8562 0.85619589 743 O75494-5;Q5JRI1;O75494-4;Q5JRI3;O75494-3;O75494-2;O75494 SRSF10 Serine/arginine-rich splicing factor 10 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 74.578 67.15 4 0.0022206 2 46743 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.872 51.407 26519000 915890 4057400 3347300 1177000 5087400 11934000 1902 743 1878 8482;8483;8484;8485;8486;8487 5652;5653 5652 2 EGRPSGEAFVELESEDEVK Unmodified 2105.9753 0.97530798 322 D6RBM0;E9PCY7;P31943;G8JLB6;D6RIU0;D6RAM1;D6R9T0;D6RFM3;D6RIT2;D6RDU3;D6RJ04;D6RIH9;E7EQJ0;E7EN40;D6RDL0 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 132.1 122.6 3 5.8403E-229 6 84449 20150910_Q1_SA_NiHu_Masterprac_group10_B 162.82 130.82 481640000 51109000 204250000 54889000 56909000 38337000 76147000 1903 322 1879 8488;8489;8490;8491;8492;8493 5654;5655;5656;5657;5658;5659 5658 6 EGRPSGEAFVELESEEEVK Unmodified 2119.991 0.99095804 970 P55795;B4DFK9 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H2, N-terminally processed yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 132.18 122.88 3 0.00017198 2 84698 20150910_Q1_SA_NiHu_Masterprac_group10_B 81.788 52.71 15342000 0 7790400 7551800 0 0 0 1904 970 1880 8494;8495 5660;5661 5661 2 EGRQSGEAFVELGSEDDVK Unmodified 2050.9443 0.9443422 958 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 119.77 119.16 3 0.014848 1 76863 20150910_Q1_SA_NiHu_Masterprac_group10_B 48.196 37.368 2224800 0 2224800 0 0 0 0 1905 958 1881 8496 5662 5662 0 EGRYTVLAENK Unmodified 1278.6568 0.65681479 522 Q12872;F5H6B8;F5H5X1;F5H525 SFSWAP Splicing factor, suppressor of white-apricot homolog yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 65.263 64.686 3 0.0085261 1 45043 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.214 42.02 2830200 0 0 0 321840 0 2508300 1906 522 1882 8497;8498 5663 5663 1 EGRYTVLAENKSDEK Unmodified 1737.8533 0.85334235 522 Q12872;F5H6B8;F5H5X1;F5H525 SFSWAP Splicing factor, suppressor of white-apricot homolog yes no 0 0 2 By matching By matching By MS/MS By matching By MS/MS By MS/MS 2 2 1 1 2 63.373 56.767 3;4 0.0019882 4 46330 20150910_Q1_SA_NiHu_Masterprac_group13_C 66.784 46.044 6736300 0 1699700 1961200 509050 743290 1823100 1907 522 1883 8499;8500;8501;8502;8503;8504;8505;8506 5664;5665;5666;5667 5664 4 EGSDGPLATSKPVPAEK Unmodified 1681.8523 0.85227972 449 E9PJS4;P08240 SRPR Signal recognition particle receptor subunit alpha yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 79.32 72.786 3 0.0021116 1 50341 20150910_Q1_SA_NiHu_Masterprac_group13_B 78.69 60.904 1965000 0 768250 497940 698760 0 0 1908 449 1884 8507;8508;8509 5668 5668 1 EGVQWEAK Unmodified 945.4556 0.45559579 430 Q12873;E9PG89;Q12873-2;H7C2H0 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 76.28 69.328 2 0.0017556 2 48696 20150910_Q1_SA_NiHu_Masterprac_group10_B 97.635 97.635 11331000 0 2497500 4005400 0 0 4827900 1909 430 1885 8510;8511;8512 5669;5670 5670 1 EHALLAYTLGVK Unmodified 1313.7343 0.73433683 1006 Q5VTE0;P68104;F8W6I0;Q05639 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 133.21 126.12 2;3 0 5 88477 20150910_Q1_SA_NiHu_Masterprac_group15_B 173.76 125.15 266030000 0 8185500 0 0 2210000 255640000 1910 1006 1886 8513;8514;8515;8516;8517 5671;5672;5673;5674;5675 5672 5 EHASGSGAQSEAAGRTEPTGPK Unmodified 2123.9832 0.98318732 1121 Q14980-2;Q14980;F5H2L0 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 43.124 37.969 3;4 3.1285E-06 10 31999 20150910_Q1_SA_NiHu_Masterprac_group15_C 75.215 63.896 30746000 3616700 6927500 4252500 2990400 4774700 8184700 1911 1121 1887 8518;8519;8520;8521;8522;8523;8524;8525;8526;8527;8528;8529 5676;5677;5678;5679;5680;5681;5682;5683;5684;5685 5681 10 EHHFGSSGMTLHER Unmodified 1623.7212 0.72122274 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 66.736 58.588 4 0.025213 1 41290 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.983 28.491 2906000 0 0 0 0 722330 2183700 1912 1639 1888 8530;8531 5686 5686 1 EHLELLK Unmodified 880.50182 0.5018177 274 C9JZ40;Q7Z2E3-4;Q7Z2E3-5;Q7Z2E3-9;Q7Z2E3-10;Q7Z2E3-11;Q7Z2E3-7;Q7Z2E3;Q7Z2E3-6;Q7Z2E3-2;F8W6G5;Q7Z2E3-3;Q7Z2E3-8;H7BXV7 APTX Aprataxin yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 94.484 85.335 2 1.198E-07 2 63268 20150910_Q1_SA_NiHu_Masterprac_group15_C 116.54 76.191 0 0 0 0 0 0 0 1913 274 1889 8532;8533 5687;5688 5688 2 EHLHTDILK Unmodified 1104.5928 0.59275797 769 O95243-2 MBD4 Methyl-CpG-binding domain protein 4 no no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 73.953 65.555 2 1.6176E-29 2 45831 20150910_Q1_SA_NiHu_Masterprac_group15_B 134.77 76.536 1035500 0 0 0 0 269100 766360 1914 769 1890 8534;8535 5689;5690 5690 2 EHLLQSNIGTGEK Unmodified 1424.726 0.72595699 1204 Q5VTR2 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 87.686 78.413 3 0.0013991 3 54078 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.905 41.027 7993600 0 1875200 1566800 0 727930 3823600 1915 1204 1891 8536;8537;8538;8539 5691;5692;5693 5692 3 EHLTEQINVEEK Unmodified 1467.7205 0.72053726 1353 Q92576-2;Q92576 PHF3 PHD finger protein 3 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 90.405 82.71 2;3 0 13 63218 20150910_Q1_SA_NiHu_Masterprac_group13_C 231.67 211.83 58066000 5023100 13546000 8989600 7201600 8931600 14374000 1916 1353 1892 8540;8541;8542;8543;8544;8545;8546;8547;8548;8549;8550;8551 5694;5695;5696;5697;5698;5699;5700;5701;5702;5703;5704;5705;5706 5697 13 EHMVLAPR Unmodified 951.49602 0.49602082 258 Q13111-2;C9JLF8;Q13111-3;Q13111 CHAF1A Chromatin assembly factor 1 subunit A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 62.84 61.686 2 0.009371 2 43235 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.33 76.433 771140 0 0 0 0 0 771140 1917 258 1893 8552 5707;5708 5707 2 EHQEMDEGSQSLEK Unmodified 1645.689 0.68897914 1345 Q8WYP5;Q8WYP5-3;Q8WYP5-2 AHCTF1 Protein ELYS yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 55.606 50.25 3 0.00017299 4 35819 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.78 79.169 3971100 0 674770 617160 428630 881280 1369300 1918 1345 1894 8553;8554;8555;8556;8557;8558 5709;5710;5711;5712 5710 4 EHSLQVSPSLEK Unmodified 1352.6936 0.69359423 767 O95235;B4DL79 KIF20A Kinesin-like protein KIF20A yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 90.553 82.824 3 0.0016352 2 61762 20150910_Q1_SA_NiHu_Masterprac_group15_C 89.356 63.656 7239900 413450 706750 1011200 611610 1769400 2727500 1919 767 1895 8559;8560;8561;8562;8563;8564 5713;5714 5713 2 EIECSIAGAHEK Unmodified 1342.6187 0.61871473 1221 Q6I9Y2 THOC7 THO complex subunit 7 homolog yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 2 2 65.714 58.594 2;3 0.018667 2 41312 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.576 41.121 6464200 0 959570 0 0 2286400 3218200 1920 1221 1896 8565;8566;8567;8568;8569 5715;5716 5715 2 EIEEESETTVEADLTDKQK Unmodified 2193.0172 0.017232371 331 E7EQY4;Q9BTC8-2;D6W5A2;F8W8M8;E7EV10;Q9BTC8;E9PCS8 MTA3 Metastasis-associated protein MTA3 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 124.01 116.19 3 0.0012841 2 81039 20150910_Q1_SA_NiHu_Masterprac_group13_C 57.708 44.089 14501000 0 1475100 12356000 0 0 669340 1921 331 1897 8570;8571;8572 5717;5718 5717 2 EIEKVILTR Unmodified 1099.6601 0.66010926 244 H0Y5Z6;C9JFZ9;Q5SVK0;H0Y382;Q5SVK5;Q12791-5;H0Y379;Q5SVJ7;Q12791-4;Q5SVJ9;Q5SVK3;Q5SVJ8;Q12791;Q12791-7;F8WA96;Q12791-3 KCNMA1 Calcium-activated potassium channel subunit alpha-1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 132.69 114.84 2 0.00054632 1 81699 20150910_Q1_SA_NiHu_Masterprac_group15_C 112.11 1.0467 25293000000 0 0 0 0 25293000000 0 1922 244 1898 8573 5719 5719 1 EIEMSVDDDDINSSK Unmodified 1695.7145 0.71452518 1533 Q9NQW6;Q9NQW6-2 ANLN Actin-binding protein anillin yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 110.94 108.31 2 0.0030376 3 74066 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.788 47.434 2252500 0 998200 0 0 0 1254300 1923 1533 1899 8574;8575 5720;5721;5722 5721 3 EIENGHIFTVNDQFTSK Unmodified 1977.9432 0.94321999 1088 Q13618-3;Q13618-2;Q13618 CUL3 Cullin-3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.8 131.19 3 0.0048804 1 84675 20150910_Q1_SA_NiHu_Masterprac_group10_B 46.543 27.246 11944000 0 11944000 0 0 0 0 1924 1088 1900 8576 5723 5723 1 EIERPFETYK Unmodified 1310.6507 0.65066678 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 2 1 100.37 91.711 2;3 0.016145 4 67276 20150910_Q1_SA_NiHu_Masterprac_group15_C 67.207 39.563 41916000 6197600 10884000 5050000 2317400 7274300 10192000 1925 919;920 1901 8577;8578;8579;8580;8581;8582;8583;8584;8585;8586;8587 5724;5725;5726;5727 5726 4 EIETYHNLLEGGQEDFESSGAGK Unmodified 2509.1245 0.12449141 899 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 132.84 132.54 3 0 2 85956 20150910_Q1_SA_NiHu_Masterprac_group13_B 177.29 171.27 73686000 0 61268000 0 12417000 0 0 + 1926 899 1902 8588;8589 5728;5729 5728 2 EIIKQEENVDPDYWEK Unmodified 2033.9582 0.95820135 430 Q12873;E9PG89;Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 no no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 130.47 128.41 2;3 2.1903E-249 3 85839 20150910_Q1_SA_NiHu_Masterprac_group15_B 176.42 147.07 34264000 0 12485000 0 0 0 21779000 1927 430 1903 8590;8591;8592 5730;5731;5732 5730 3 EIIKQEESVDPDYWEK Unmodified 2006.9473 0.94730231 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 131.17 128.39 3 1.325E-218 3 83639 20150910_Q1_SA_NiHu_Masterprac_group10_B 170.78 142.8 59064000 0 31727000 0 0 0 27336000 1928 486 1904 8593;8594 5733;5734;5735 5735 3 EIISKEQGNVK Unmodified 1243.6772 0.67721588 1543 Q9NSD9 FARSB Phenylalanine--tRNA ligase beta subunit yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 50.259 43.014 3 0.0029339 1 30851 20150910_Q1_SA_NiHu_Masterprac_group10_B 85.355 22.139 832840 0 440730 392110 0 0 0 1929 1543 1905 8595;8596 5736 5736 1 EIKVKVDNISESTDK Unmodified 1703.8941 0.89414453 1353 Q92576-2;Q92576;E7ER40 PHF3 PHD finger protein 3 yes no 0 0 2 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 92.611 84.782 3 0.00018515 2 57605 20150910_Q1_SA_NiHu_Masterprac_group10_B 88.78 64.824 25909000 4629900 5312500 6234000 3193200 2178100 4360900 1930 1353 1906 8597;8598;8599;8600;8601;8602 5737;5738 5738 2 EILKEADTDVQVCPNYSIPQK Unmodified 2446.205 0.20499034 1248 Q7Z2T5;Q7Z2T5-2 TRMT1L TRMT1-like protein yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 131.68 128.89 3 1.9157E-09 2 84305 20150910_Q1_SA_NiHu_Masterprac_group10_B 86.258 54.778 9084900 0 2154000 0 0 0 6930900 1931 1248 1907 8603;8604 5739;5740 5740 2 EILQDKDGLNQR Unmodified 1427.7369 0.73685603 1497 Q9H6R4-4;Q9H6R4;Q9H6R4-2;G8JLK7;Q9H6R4-3 NOL6 Nucleolar protein 6 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 73.388 72.76 3 0.025076 1 50506 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.934 13.614 1737600 0 0 0 555880 0 1181700 1932 1497 1908 8605;8606 5741 5741 1 EILTQGQINSTSGLNK Unmodified 1701.8897 0.88972785 1209 Q5VWQ0;H0YDA9;Q5VWQ0-4 RSBN1 Round spermatid basic protein 1 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 118.28 108.78 2 1.8877E-18 3 74378 20150910_Q1_SA_NiHu_Masterprac_group15_B 105.39 86.229 7316800 753080 1835800 0 0 1331700 3396300 1933 1209 1909 8607;8608;8609;8610 5742;5743;5744 5742 3 EILVGDVGQTVDDPYATFVK Unmodified 2165.0892 0.089215523 461 E9PP50;P23528;G3V1A4;E9PK25;E9PQB7;E9PLJ3;E9PS23 CFL1 Cofilin-1 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 133.94 133.94 2 1.7053E-178 1 87104 20150910_Q1_SA_NiHu_Masterprac_group13_B 145.71 120.55 0 0 0 0 0 0 0 1934 461 1910 8611 5745 5745 1 EINSDQATQGNISSDR Unmodified 1733.7816 0.78163397 1159 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 70.603 62.255 2 0.0029237 1 43657 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.097 39.457 741850 0 0 0 0 198830 543030 1935 1159 1911 8612;8613 5746 5746 1 EINSDQATQGNISSDRGK Unmodified 1918.8981 0.89806071 1159 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 58.503 52.105 3 0.0017452 4 42661 20150910_Q1_SA_NiHu_Masterprac_group15_C 62.813 51.438 6956600 0 1344000 1086100 582170 1763500 2180900 1936 1159 1912 8614;8615;8616;8617;8618 5747;5748;5749;5750 5750 4 EINSDQATQGNISSDRGKK Unmodified 2046.993 0.99302373 1159 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 2 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 49.948 44.141 4 0.00063292 4 31525 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.374 63.374 7134000 734790 1220000 1084800 1097300 1004900 1992200 1937 1159 1913 8619;8620;8621;8622;8623;8624 5751;5752;5753;5754 5752 4 EIPSATQSPISK Unmodified 1256.6612 0.66123147 682 I3L1L3;Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 92.429 85.69 2 3.4903E-12 8 58459 20150910_Q1_SA_NiHu_Masterprac_group15_B 110.64 60.603 186630000 26931000 23574000 19251000 17633000 53282000 45963000 1938 682 1914 8625;8626;8627;8628;8629;8630;8631 5755;5756;5757;5758;5759;5760;5761;5762 5757 8 EIPSATQSPISKK Unmodified 1384.7562 0.75619449 682 I3L1L3;Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 2 1 79.788 70.956 2;3 2.9659E-16 7 54603 20150910_Q1_SA_NiHu_Masterprac_group15_C 112.02 79.989 33283000 7481200 4684100 4405900 2763300 8950600 4998200 1939 682 1915 8632;8633;8634;8635;8636;8637;8638;8639;8640;8641;8642 5763;5764;5765;5766;5767;5768;5769 5766 5 EIPVTVVQETQK Unmodified 1369.7453 0.74529545 1573 Q9P0U3;Q9P0U3-2 SENP1 Sentrin-specific protease 1 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 118 109.82 2 0.034746 3 71766 20150910_Q1_SA_NiHu_Masterprac_group13_B 46.069 30.969 38414000 0 3983400 8222200 6600500 6885300 12723000 1940 1573 1916 8643;8644;8645;8646;8647 5770;5771;5772 5770 3 EIPVTVVQETQKK Unmodified 1497.8403 0.84025847 1573 Q9P0U3;Q9P0U3-2 SENP1 Sentrin-specific protease 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 98.676 95.917 3 0.0064815 1 65607 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.136 40.781 1936000 0 0 0 0 0 1936000 1941 1573 1917 8648 5773 5773 1 EIQEPDPTYEEK Unmodified 1476.662 0.66201933 500 F5GZI1;O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 90.47 82.724 2 2.2944E-37 5 62991 20150910_Q1_SA_NiHu_Masterprac_group13_C 127.52 68.321 20465000 3154400 3229100 2285700 1556600 3489200 6750400 1942 500 1918 8649;8650;8651;8652;8653;8654 5774;5775;5776;5777;5778 5775 5 EIQLTPQIAK Unmodified 1139.655 0.65502388 473 Q8NB78-2;F2Z2A7;Q8NB78 KDM1B Lysine-specific histone demethylase 1B yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 123.49 120.76 2 0.0095431 2 81691 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.652 38.144 4171500 0 1335900 0 0 0 2835500 1943 473 1919 8655;8656 5779;5780 5779 2 EIRESTGAQVQVAGDMLPNSTER Unmodified 2487.2024 0.20236458 1135;548 F8VZX2;Q15366-4;Q15366-5;Q15366-3;Q15366;Q15366-2;H3BRU6;G3V0E8;B4DXP5;B4DRD7;F8W0G4;B4DLC0;F8VRG9;F8VXH9;F8VWQ4;P57721-2;P57721-3;P57721-5;E9PFP8;P57721-4;P57721;H9KV40;Q15365 PCBP2;PCBP3;PCBP1 Poly(rC)-binding protein 2;Poly(rC)-binding protein 3;Poly(rC)-binding protein 1 no no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 130.78 124.95 3 5.1045E-147 5 85925 20150910_Q1_SA_NiHu_Masterprac_group15_B 138.25 94.301 54645000 0 16149000 0 5424900 1782300 31289000 1944 548;1135 1920 8657;8658;8659;8660;8661 5781;5782;5783;5784;5785 5782 5 EIRESTGAQVQVAGDMLPNSTER Oxidation (M) 2503.1973 0.1972792 1135;548 F8VZX2;Q15366-4;Q15366-5;Q15366-3;Q15366;Q15366-2;H3BRU6;G3V0E8;B4DXP5;B4DRD7;F8W0G4;B4DLC0;F8VRG9;F8VXH9;F8VWQ4;P57721-2;P57721-3;P57721-5;E9PFP8;P57721-4;P57721;H9KV40;Q15365 PCBP2;PCBP3;PCBP1 Poly(rC)-binding protein 2;Poly(rC)-binding protein 3;Poly(rC)-binding protein 1 no no 0 1 1 By matching By matching By matching By matching By matching By MS/MS 1 1 116.02 105.19 3 0.0041977 1 72083 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.051 47.057 5050400 0 0 1340600 0 0 3709800 1945 548;1135 1920 8662;8663 5786 5786 62 1 EIRNPDSLKELTHLK Unmodified 1791.9843 0.98429694 1312 Q8N9T8;D3YTE0;Q8N9T8-2;F5H196;H0YFD2 KRI1 Protein KRI1 homolog yes no 0 0 2 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 123.87 113.54 4 0.0019882 3 78755 20150910_Q1_SA_NiHu_Masterprac_group15_C 66.784 53.636 9389500 0 1014600 3024900 0 2653400 2696600 1946 1312 1921 8664;8665;8666;8667 5787;5788;5789 5789 3 EIRQQLAEKAK Unmodified 1312.7463 0.7462985 746 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 2 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 48.997 43.442 3 0.027267 2 36177 20150910_Q1_SA_NiHu_Masterprac_group15_C 66.663 35.839 6651800 0 1950100 1046700 526980 1009000 2119000 1947 746 1922 8668;8669;8670;8671;8672 5790;5791 5791 2 EISEASENIYSDVR Unmodified 1610.7424 0.74239491 1345 Q8WYP5;Q8WYP5-3;Q8WYP5-2 AHCTF1 Protein ELYS yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 119.61 114.94 2 0.00083393 1 78426 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.209 55.86 723550 0 0 0 0 0 723550 1948 1345 1923 8673 5792 5792 0 EISNSDGTRPVGMLGK Unmodified 1659.825 0.82501911 345 E5RJW4;Q9NW64;Q9NW64-2;F5GWK3 RBM22 Pre-mRNA-splicing factor RBM22 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 2 1 2 2 2 96.855 89.937 2;3 0.00087873 4 66156 20150910_Q1_SA_NiHu_Masterprac_group15_C 70.26 50.582 27188000 4508600 3090800 3247100 2521300 4743000 9077400 1949 345 1924 8674;8675;8676;8677;8678;8679;8680;8681;8682;8683 5793;5794;5795;5796 5795 4 EISSSQWEK Unmodified 1092.5088 0.50875357 724 O43913;B4DXT8;O43913-2 ORC5 Origin recognition complex subunit 5 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 74.389 68.734 2 0.018678 1 47697 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.552 45.776 14448000 1062400 2380800 0 1187700 3540200 6277300 1950 724 1925 8684;8685;8686;8687;8688 5797 5797 1 EITALAPSTMK Unmodified 1160.6111 0.61111015 164 F5H0N0;B4E335;P63261;P60709;I3L3I4;E7EQV5;Q5T8M8;A6NL76;B4DW52;P68133;P68032;Q5T8M7;F5H1C1;P63267;P62736;F5GYT4;E9PG30;B4DUI8 ACTG1;ACTB;ACTA1;ACTC1;ACTG2;ACTA2 Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 116.26 108.18 2 1.116E-41 3 78173 20150910_Q1_SA_NiHu_Masterprac_group13_C 132.17 102.64 93246000 0 12503000 13090000 8031100 19042000 40579000 1951 164 1926 8689;8690;8691;8692;8693 5798;5799;5800 5798 3 EITALAPSTMKIK Unmodified 1401.7901 0.79013715 164 F5H0N0;B4E335;P63261;P60709;I3L3I4;E7EQV5;Q5T8M8;A6NL76;B4DW52;P68133;P68032;Q5T8M7;F5H1C1;P63267;P62736;F5GYT4;E9PG30;B4DUI8 ACTG1;ACTB;ACTA1;ACTC1;ACTG2;ACTA2 Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 131.41 113.54 3 0.0016171 3 82298 20150910_Q1_SA_NiHu_Masterprac_group13_C 80.318 56.565 9134900 0 0 6524300 0 2610600 0 1952 164 1927 8694;8695 5801;5802;5803 5801 3 EIVETFANK Unmodified 1049.5393 0.53932542 945 P49792;E9PGT0 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 94.058 91.801 2 0.025927 1 62790 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.568 33.569 1920300 0 0 0 0 0 1920300 1953 945 1928 8696 5804 5804 1 EKFLVTPQDYAR Unmodified 1465.7565 0.75652884 1263 Q86UT8;E9PJ16;E9PPT8 CCDC84 Coiled-coil domain-containing protein 84 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 125.07 122.29 3 0.013198 2 78301 20150910_Q1_SA_NiHu_Masterprac_group10_B 56.551 33.459 1819400 0 649050 0 0 0 1170300 1954 1263 1929 8697;8698 5805;5806 5806 2 EKGSRVFCVEEEDSESSLQK Unmodified 2342.0696 0.069619068 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 105.05 95.891 4 9.0312E-05 2 71190 20150910_Q1_SA_NiHu_Masterprac_group13_C 71.637 53.853 5322000 0 1942600 1728500 1093200 557730 0 1955 1111 1930 8699;8700;8701;8702 5807;5808 5808 2 EKPLEEPDAQGR Unmodified 1367.6681 0.66810776 1447 Q9BTC0 DIDO1 Death-inducer obliterator 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 54.407 48.504 3 0.0035364 1 34778 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.846 44.993 3278900 530980 813230 170530 0 0 1764200 1956 1447 1931 8703;8704;8705;8706 5809 5809 1 EKSDDILEEGEK Unmodified 1390.6464 0.64636926 1248 Q7Z2T5;Q7Z2T5-2 TRMT1L TRMT1-like protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 2 1 2 71.491 66.677 2;3 0.0047016 2 46493 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.239 67.51 5933700 0 1755500 0 0 963200 3215000 1957 1248 1932 8707;8708;8709;8710;8711 5810;5811 5811 2 EKTPDLHYELK Unmodified 1371.7034 0.70343063 1673 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 2 1 1 1 121.74 111.79 2 0.017397 1 80416 20150910_Q1_SA_NiHu_Masterprac_group13_C 69.672 21.158 77300000 0 11384000 51334000 9130900 4612400 839470 + 1958 1673 1933 8712;8713;8714;8715;8716;8717 5812 5812 1 ELAAGTESQALVSATPR Unmodified 1699.8741 0.87407779 381 Q5SY74;E7ETD5;H7BY54;Q96IY1 NSL1 Kinetochore-associated protein NSL1 homolog yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 127.38 119.52 2 0.0013889 3 78544 20150910_Q1_SA_NiHu_Masterprac_group10_B 80.459 50.151 8720400 0 1908000 3596800 0 0 3215700 1959 381 1934 8718;8719;8720 5813;5814;5815 5815 2 ELAAHWAAHTDVKPFK Unmodified 1819.937 0.93695282 1419 Q96SL8 FIZ1 Flt3-interacting zinc finger protein 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 133.46 128.5 4 0.0042188 1 88514 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.009 23.369 5071900 0 0 0 0 0 5071900 1960 1419 1935 8721 5816 5816 1 ELAAQLNEEAK Unmodified 1214.6143 0.61428128 1653 Q9Y5B9 SUPT16H FACT complex subunit SPT16 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 89.431 81.597 2 7.112E-20 5 56594 20150910_Q1_SA_NiHu_Masterprac_group10_C 119.27 77.064 25866000 5686800 5312700 1995200 1654600 5960100 5256700 1961 1653 1936 8722;8723;8724;8725;8726;8727;8728 5817;5818;5819;5820;5821 5821 5 ELAETEPKFNSVKEK Unmodified 1747.8992 0.89922991 1625 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 85.812 78.567 3 0.018113 1 54145 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.009 39.477 5746700 536110 1532900 0 0 1039000 2638700 1962 1625 1937 8729;8730;8731;8732 5822 5822 1 ELAFQISK Unmodified 934.51238 0.51238239 91 H0Y6N8;H0Y4V8;H0Y6G9;H0Y557;F6S4E6;F6UN21;F6TRA5;B4DIJ6;F6WLT2;F8VZL8;H0Y7X6;H0Y7G4;Q5STU3;Q13838;Q13838-2;F8VQ10;H0Y6J9;H0Y6Y9;F6V772;F6QYI9;F6R6M7 DDX39B Spliceosome RNA helicase DDX39B no no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 131.28 115.59 2 0.0117 1 76917 20150910_Q1_SA_NiHu_Masterprac_group10_C 91.087 51.834 1961700 1961700 0 0 0 0 0 1963 91 1938 8733 5823 5823 1 ELAQQVQQVADDYGK Unmodified 1690.8162 0.81622856 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 132.88 121.58 2 0 5 85551 20150910_Q1_SA_NiHu_Masterprac_group13_B 208.39 184.57 222330000 30241000 0 36034000 23624000 108910000 23520000 1964 1361;629 1939 8734;8735;8736;8737;8738 5824;5825;5826;5827;5828 5824 4 ELASCNPVVLEESK Unmodified 1573.7658 0.76577289 1628 Q9Y232-2;Q9Y232;Q9Y232-3;Q9Y232-4 CDYL Chromodomain Y-like protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 120.17 117.49 2 0.017064 1 79812 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.287 39.71 1018200 0 239400 0 0 0 778830 1965 1628 1940 8739;8740 5829 5829 0 ELASGEYFLKANQK Unmodified 1596.8148 0.814772 1087 Q13601-2;Q13601 KRR1 KRR1 small subunit processome component homolog yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 130.15 114.47 3 1.526E-12 1 75729 20150910_Q1_SA_NiHu_Masterprac_group10_C 101.39 76.888 2266600 2266600 0 0 0 0 0 1966 1087 1941 8741 5830 5830 1 ELASSEQNKNHINNELK Unmodified 1966.9708 0.97083172 1362 Q92878-2;Q92878;Q92878-3;E7EN38 RAD50 DNA repair protein RAD50 yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 1 2 63.806 57.637 3;4 1.3591E-07 4 40698 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.725 66.02 17693000 1381400 3735900 2928100 1450600 1780700 6416000 1967 1362 1942 8742;8743;8744;8745;8746;8747;8748;8749;8750;8751 5831;5832;5833;5834 5833 4 ELAVQIYEEARK Unmodified 1447.7671 0.76709352 693 O00571;O00571-2;B4DLU5;B4DXX7;O15523 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 131.44 121.11 3 0.0010155 3 85644 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.356 63.245 9118700 2267200 0 0 0 0 6851400 1968 693 1943 8752;8753 5835;5836;5837 5835 3 ELDLHGLYTR Unmodified 1215.6248 0.62478638 1215 Q68CP9-3;Q68CP9 ARID2 AT-rich interactive domain-containing protein 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 118.89 108.38 2 0.017612 1 74226 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.627 7.0345 2589500 0 0 0 0 402870 2186600 1969 1215 1944 8754;8755 5838 5838 1 ELDPSLVSANDSPSGMQTR Unmodified 2002.9266 0.92658365 1201 Q5UIP0-2;Q5UIP0;H7C2B5 RIF1 Telomere-associated protein RIF1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 130.44 129.83 2 0.0064501 1 83232 20150910_Q1_SA_NiHu_Masterprac_group10_B 44.595 28.016 2526000 0 2526000 0 0 0 0 1970 1201 1945 8756 5839 5839 1 ELEKVCNPIITK Unmodified 1442.7803 0.78030075 824 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 107.46 100.33 3 0.011349 1 67279 20150910_Q1_SA_NiHu_Masterprac_group10_C 58.04 22.383 4834900 860650 1328300 652870 371230 0 1621800 1971 824 1946 8757;8758;8759;8760;8761 5840 5840 1 ELELEVINLQKEK Unmodified 1583.877 0.8770379 768 O95239;O95239-2 KIF4A Chromosome-associated kinesin KIF4A yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 133.42 132.82 2 1.2347E-88 1 86451 20150910_Q1_SA_NiHu_Masterprac_group10_B 142.1 83.836 0 0 0 0 0 0 0 1972 768 1947 8762 5841 5841 1 ELEQEREDQKVK Unmodified 1529.7686 0.76855009 751 O75940 SMNDC1 Survival of motor neuron-related-splicing factor 30 yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 36.56 31.205 3 0.040428 1 22361 20150910_Q1_SA_NiHu_Masterprac_group10_C 56.548 14.843 4241400 528820 1660700 1286200 381960 383740 0 1973 751 1948 8763;8764;8765;8766;8767 5842 5842 1 ELESLQNEHAQR Unmodified 1452.6957 0.69571949 829 P12757-5;P12757;P12757-3 SKIL Ski-like protein yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 62.159 55.924 3 0.0028879 2 39492 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.864 47.951 2885100 0 810650 0 0 848240 1226200 1974 829 1949 8768;8769;8770 5843;5844 5843 2 ELEVMTAK Unmodified 919.46847 0.46846866 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;H0YH75 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 81.765 79.783 2 0.0088271 1 54770 20150910_Q1_SA_NiHu_Masterprac_group15_B 100.02 42.84 4543500 0 1141000 0 0 0 3402500 1975 1121 1950 8771;8772 5845 5845 1 ELFQTPCTDNPTTDEK Unmodified 1894.8255 0.82547262 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 130.75 113.61 2 6.6786E-80 3 76645 20150910_Q1_SA_NiHu_Masterprac_group10_C 134.88 117.32 22416000 15020000 0 6148900 0 1246900 0 1976 919;920 1951 8773;8774;8775 5846;5847;5848 5848 3 ELFQTPDHTEESTTDDK Unmodified 1991.8596 0.85960952 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 99.166 91.445 3 2.5276E-21 4 61654 20150910_Q1_SA_NiHu_Masterprac_group10_B 101.3 67.943 13432000 0 4846000 2473400 662170 1518300 3932100 1977 919;920 1952 8776;8777;8778;8779;8780 5849;5850;5851;5852 5852 4 ELFQTPDHTEESTTDDKTTK Unmodified 2322.0499 0.049929483 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 91.933 83.161 4 0.008139 1 56968 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.716 42.716 4935800 0 0 1536600 485420 776460 2137300 1978 919;920 1953 8781;8782;8783;8784 5853 5853 1 ELFQTPGHTEEAVAAGK Unmodified 1783.8741 0.87407779 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 2 2 117.69 107.07 2;3 1.4254E-07 6 70358 20150910_Q1_SA_NiHu_Masterprac_group10_B 89.466 70.478 54099000 5972200 10108000 7558700 0 8367500 22093000 1979 919;920 1954 8785;8786;8787;8788;8789;8790;8791;8792;8793 5854;5855;5856;5857;5858;5859 5859 6 ELFQTPGHTEELVAAGK Unmodified 1825.921 0.92102798 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 2 131.86 124.03 2;3 8.8371E-32 8 84181 20150910_Q1_SA_NiHu_Masterprac_group10_B 108.77 82.475 215890000 25983000 55120000 19735000 22412000 7413900 85227000 1980 919;920 1955 8794;8795;8796;8797;8798;8799;8800;8801;8802;8803 5860;5861;5862;5863;5864;5865;5866;5867 5865 8 ELFQTPGHTEESMTDDK Unmodified 1963.8469 0.84693634 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 2 2 1 2 2 115.9 106.38 2;3 0.0011884 5 71376 20150910_Q1_SA_NiHu_Masterprac_group10_C 69.485 69.485 39911000 3571600 9947500 4881800 3354400 2888100 15267000 1981 919;920 1956 8804;8805;8806;8807;8808;8809;8810;8811;8812;8813 5868;5869;5870;5871;5872 5872 5 ELFQTPGPSEESMTDEK Unmodified 1923.8408 0.84078833 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 2 1 132.13 127.88 2 1.6396E-73 5 87011 20150910_Q1_SA_NiHu_Masterprac_group15_B 128.74 90.366 79170000 20814000 19066000 0 17122000 0 22167000 1982 919;920 1957 8814;8815;8816;8817;8818 5873;5874;5875;5876;5877 5875 4 ELFQTPGTDKPTTDEK Unmodified 1805.8683 0.86832371 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 3 1 1 1 2 101.17 94.102 2;3 0.00019566 6 64107 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.824 59.276 36944000 4606000 9524900 5992200 2388100 0 14433000 1983 919;920 1958 8819;8820;8821;8822;8823;8824;8825;8826 5878;5879;5880;5881;5882;5883 5880 6 ELFQTPICTDKPTTHEK Unmodified 2043.9935 0.993541 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 115.93 106.75 3;4 0.00020502 11 70206 20150910_Q1_SA_NiHu_Masterprac_group10_B 85.473 71.526 61303000 6813600 13716000 7090700 4785800 5794500 23102000 1984 919;920 1959 8827;8828;8829;8830;8831;8832;8833;8834;8835;8836;8837;8838 5884;5885;5886;5887;5888;5889;5890;5891;5892;5893;5894 5892 11 ELFQTPVCTDKPTTHEK Unmodified 2029.9779 0.97789093 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 3 2 106.39 96.605 3;4 1.8757E-21 8 65885 20150910_Q1_SA_NiHu_Masterprac_group15_B 103.66 84.722 67956000 0 25507000 7992900 0 12493000 21963000 1985 919;920 1960 8839;8840;8841;8842;8843;8844;8845;8846 5895;5896;5897;5898;5899;5900;5901;5902 5898 8 ELFSAPGHTEESMTIDK Unmodified 1890.8669 0.8669435 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 1 130.11 128.57 2;3 1.2808E-21 3 82702 20150910_Q1_SA_NiHu_Masterprac_group10_B 104.16 104.16 34284000 0 11119000 0 1885800 0 21280000 1986 919;920 1961 8847;8848;8849;8850 5903;5904;5905 5904 3 ELGELIPLRQK Unmodified 1294.7609 0.76088593 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;H0YH75 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 132.56 122.21 2 2.7675E-105 3 87666 20150910_Q1_SA_NiHu_Masterprac_group15_B 157.97 77.87 40735000 0 15224000 4919900 0 3995000 16596000 1987 1121 1962 8851;8852;8853;8854 5906;5907;5908 5906 3 ELHVGENQIEMLEAEHLK Oxidation (M) 2134.0365 0.036468446 1505 Q9H9A6 LRRC40 Leucine-rich repeat-containing protein 40 yes yes 0 1 0 By matching By matching By matching By matching By matching By MS/MS 1 132.56 127.59 4 0.0012454 1 87505 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.164 38.492 7958000 0 0 0 0 0 7958000 1988 1505 1963 8855 5909 5909 172 1 ELIEIGCEDK Unmodified 1204.5646 0.56455389 614 H0Y818;P40692;F5H745;E9PEB4;H0Y3I0;E9PCU2;H0Y5L7;H0Y793 MLH1 DNA mismatch repair protein Mlh1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 114.68 110.62 2 0.025409 1 75585 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.265 44.571 1126900 0 0 0 0 0 1126900 1989 614 1964 8856 5910 5910 1 ELISDNQYR Unmodified 1136.5462 0.54620171 873 P25205 MCM3 DNA replication licensing factor MCM3 yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 88.795 79.621 2 0.0060651 3 54787 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.649 43.609 12479000 523440 3340000 1394600 0 2186800 5034600 1990 873 1965 8857;8858;8859;8860;8861 5911;5912;5913 5911 3 ELKTDSSPNQAR Unmodified 1344.6634 0.66335673 882 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 29.361 27.73 3 0.0059663 1 19287 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.473 28.295 1264900 119460 677900 0 137390 0 330140 1991 882 1966 8862;8863;8864;8865 5914 5914 1 ELLADLER Unmodified 957.51311 0.51311067 197 O94762;B7Z8Y7;O94762-2;O94762-3 RECQL5 ATP-dependent DNA helicase Q5 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.25 126.29 2 0.015715 1 86157 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.948 20.383 2202600 0 0 0 0 0 2202600 1992 197 1967 8866 5915 5915 1 ELLADQNLK Unmodified 1042.5659 0.56587452 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 98.817 90.754 2 6.4765E-12 4 61951 20150910_Q1_SA_NiHu_Masterprac_group15_B 122.33 50.099 48334000 3521300 9110700 3547500 2906000 8389000 20859000 1993 1111 1968 8867;8868;8869;8870;8871;8872 5916;5917;5918;5919 5917 4 ELLASAPTGSGK Unmodified 1129.5979 0.59790293 1635 Q9Y2R4;A8MTP9 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 84.834 77.128 2 0.0034305 6 53245 20150910_Q1_SA_NiHu_Masterprac_group10_C 70.089 32.745 38236000 4597400 5882800 2995900 2510200 9050600 13199000 1994 1635 1969 8873;8874;8875;8876;8877;8878;8879 5920;5921;5922;5923;5924;5925 5924 6 ELLDSDSDKPCK Unmodified 1405.6395 0.63950975 1061 Q12830-4;Q12830-2;Q12830 BPTF Nucleosome-remodeling factor subunit BPTF yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 2 1 61.125 57.439 3 0.028202 2 40715 20150910_Q1_SA_NiHu_Masterprac_group10_B 48.568 37.622 2421000 313420 1150600 0 0 0 957030 1995 1061 1970 8880;8881;8882;8883 5926;5927 5927 2 ELLDTELDLHK Unmodified 1324.6874 0.68744622 1579 Q9P2N5 RBM27 RNA-binding protein 27 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 132.34 125.25 2;3 6.6859E-13 3 87254 20150910_Q1_SA_NiHu_Masterprac_group15_B 115.57 80.078 114320000 7521100 99974000 0 0 0 6820900 1996 1579 1971 8884;8885;8886 5928;5929;5930 5928 3 ELLEYYQK Unmodified 1084.5441 0.54407645 506 F5H0W5;Q9BR77-2;Q9BR77;F5H5Q8 CCDC77 Coiled-coil domain-containing protein 77 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 115.39 105.34 2 0.010634 1 71890 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.853 57.467 4472700 0 1105900 983950 0 357190 2025700 1997 506 1972 8887;8888;8889;8890 5931 5931 1 ELLGPPEAK Unmodified 952.52295 0.52294707 1115 Q14807;B7Z265;H3BRB3 KIF22 Kinesin-like protein KIF22 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 96.469 88.828 2 4.0861E-29 2 60301 20150910_Q1_SA_NiHu_Masterprac_group10_B 131.5 104.81 50780000 0 10827000 8390200 3339300 6147200 22077000 1998 1115 1973 8891;8892;8893;8894;8895 5932;5933 5933 2 ELLKQYEKQEK Unmodified 1434.7718 0.77184455 1321 Q8NE71;Q8NE71-2;H0YGW7 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 2 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 63.198 56.52 3 0.0010938 3 46086 20150910_Q1_SA_NiHu_Masterprac_group13_C 97.597 74.585 15113000 0 1919000 3576200 3022100 3456900 3139000 1999 1321 1974 8896;8897;8898;8899;8900 5934;5935;5936 5934 3 ELLNFYAWQHRESK Unmodified 1819.9006 0.90056731 1643 Q9Y3A4 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 133.14 115.29 3 0.0011287 1 82210 20150910_Q1_SA_NiHu_Masterprac_group15_C 72.681 46.09 26490000 0 0 0 0 26490000 0 2000 1643 1975 8901 5937 5937 1 ELLSAEENK Unmodified 1031.5135 0.5135046 1554 Q9NWH9;H7BXE3;H0YL55;H0YKU6 SLTM SAFB-like transcription modulator yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 68.287 61.077 2 1.3105E-11 5 48881 20150910_Q1_SA_NiHu_Masterprac_group13_C 119.62 74.281 14347000 1953200 2170300 3085100 1848100 2225100 3065300 2001 1554 1976 8902;8903;8904;8905;8906;8907 5938;5939;5940;5941;5942 5939 5 ELMERLK Unmodified 917.50044 0.50043749 1321;411 E9PC67;F8VQZ0;Q5STZ8;Q8NE71;Q8NE71-2;Q5STZ7 ABCF1 ATP-binding cassette sub-family F member 1 no no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 76.265 65.462 2 0.024633 1 51354 20150910_Q1_SA_NiHu_Masterprac_group15_C 99.375 33.572 2989400 574560 429490 1174100 0 811240 0 2002 411;1321 1977 8908;8909;8910;8911 5943 5943 1 ELNEELQAIDKLK Unmodified 1541.8301 0.83008771 1668 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 2 1 2 1 43.469 37.327 3 0.001922 2 31532 20150910_Q1_SA_NiHu_Masterprac_group15_C 84.821 35.189 7053300 1724600 376050 0 0 3908700 1043900 + 2003 1668 1978 8912;8913;8914;8915;8916;8917 5944;5945 5944 2 ELNYNLDTHTSTGR Unmodified 1619.754 0.75396265 54 Q9NSV4-6;A8MYX0;Q9NSV4-5;C9JL55;Q9NSV4-4;C9JDG1;Q9NSV4;C9JDG0 DIAPH3 Protein diaphanous homolog 3 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 95.638 87.709 3 0.0040976 1 64683 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.314 50.584 7077300 766270 765450 846260 555340 1748400 2395500 2004 54 1979 8918;8919;8920;8921;8922;8923 5946 5946 0 ELPAVELRNGK Unmodified 1224.6826 0.68263561 628 Q6JHV3;H0YMI4;Q9Y6I4;B3KMX7;H0YLB7;H0YKU8;F5H1A6 USP3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 3 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 1 1 2 98.464 90.183 2;3 0.0039182 4 61848 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.24 61.663 31535000 4683900 3632600 6323800 0 0 16895000 2005 628 1980 8924;8925;8926;8927;8928;8929 5947;5948;5949;5950 5947 4 ELPEQLQEHAIEDK Unmodified 1677.821 0.82097959 1137 Q15424;F5GZU3 SAFB Scaffold attachment factor B1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 2 116.76 108.04 2;3 7.6297E-70 9 70934 20150910_Q1_SA_NiHu_Masterprac_group10_B 134.4 83.265 34836000 3069900 7137400 3742700 2676500 8500400 9709100 2006 1137 1981 8930;8931;8932;8933;8934;8935;8936;8937;8938 5951;5952;5953;5954;5955;5956;5957;5958;5959 5957 9 ELPSFLGK Unmodified 889.49092 0.49091866 881 P26447;F5H3J5 S100A4 Protein S100-A4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.83 132.23 2 0.034579 1 85814 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.812 37.876 22540000 0 22540000 0 0 0 0 2007 881 1982 8939 5960 5960 1 ELPSHVQAMHK Unmodified 1275.6394 0.63939059 1250 Q7Z333-3;Q7Z333;Q7Z333-4 SETX Probable helicase senataxin yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 65.307 51.622 3 0.015535 1 42468 20150910_Q1_SA_NiHu_Masterprac_group13_C 60.398 37.386 412260 0 0 412260 0 0 0 2008 1250 1983 8940 5961 5961 1 ELPTVTTNVQNSQDK Unmodified 1672.8268 0.82679325 1369 Q96B01-2;Q96B01;Q96B01-3;F5H1Y0;H0YGT5 RAD51AP1 RAD51-associated protein 1 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 103.88 94.225 2 0.0034282 2 69980 20150910_Q1_SA_NiHu_Masterprac_group13_C 56.793 39.729 2554700 0 1806400 748350 0 0 0 2009 1369 1984 8941;8942 5962;5963 5962 2 ELQEVIQQQNEK Unmodified 1484.7471 0.74708636 1416 Q96R06 SPAG5 Sperm-associated antigen 5 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 90.645 83.693 2 0.016722 1 57158 20150910_Q1_SA_NiHu_Masterprac_group10_B 53.448 35.111 1639500 0 396550 590540 0 0 652380 2010 1416 1985 8943;8944;8945 5964 5964 1 ELQKGEVPKFK Unmodified 1301.7343 0.73433683 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 78.936 71.408 3 6.628E-55 2 50452 20150910_Q1_SA_NiHu_Masterprac_group10_C 141.1 109.5 61199000 4034800 13002000 8631600 5348500 7303000 22879000 2011 1611 1986 8946;8947;8948;8949;8950;8951 5965;5966 5966 2 ELQNDMTDEK Unmodified 1221.5183 0.51833198 750 O75691 UTP20 Small subunit processome component 20 homolog yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 54.19 52.902 2 0.014544 2 37723 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.355 38.588 3481200 0 582120 0 485180 0 2413900 2012 750 1987 8952;8953;8954 5967;5968 5967 2 ELQPIVYTPEDCRK Unmodified 1746.8611 0.86107026 1332 Q8NI77 KIF18A Kinesin-like protein KIF18A yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 116.59 110.6 3 0.03763 1 75678 20150910_Q1_SA_NiHu_Masterprac_group15_B 34.444 10.029 5160500 0 1050400 1235500 955490 0 1919200 2013 1332 1988 8955;8956;8957;8958 5969 5969 1 ELQQYIQAR Unmodified 1147.5986 0.59857163 1304 Q8N5P1 ZC3H8 Zinc finger CCCH domain-containing protein 8 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 103.87 97.156 2 0.00087013 5 65150 20150910_Q1_SA_NiHu_Masterprac_group10_C 109.11 31.378 31958000 3498300 3921400 0 6857100 6068000 11613000 2014 1304 1989 8959;8960;8961;8962;8963 5970;5971;5972;5973;5974 5974 5 ELQRAASQDHVR Unmodified 1408.7171 0.71712364 1642 Q9Y314 NOSIP Nitric oxide synthase-interacting protein yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 37.143 28.27 3 0.032347 1 22771 20150910_Q1_SA_NiHu_Masterprac_group13_C 46.985 14.951 540610 0 0 540610 0 0 0 2015 1642 1990 8964 5975 5975 1 ELQRAASQDHVRGFLEK Unmodified 1983.0286 0.028621372 1642 Q9Y314 NOSIP Nitric oxide synthase-interacting protein yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 2 1 1 94.386 86.716 3;4 0.0064035 2 65715 20150910_Q1_SA_NiHu_Masterprac_group13_C 45.54 27.583 24032000 0 1123600 16929000 2312800 0 3667300 2016 1642 1991 8965;8966;8967;8968;8969 5976;5977 5976 2 ELRAYQQSEAYK Unmodified 1484.726 0.72595699 235 C9K049;C9J8X5;Q9P0W2-3;Q9P0W2;Q9P0W2-2;B5MDG7 HMG20B SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 72.395 65.216 3 0.0024613 5 50957 20150910_Q1_SA_NiHu_Masterprac_group15_C 74.698 50.003 9441300 0 1930600 1885900 1068000 1505800 3051100 2017 235 1992 8970;8971;8972;8973;8974 5978;5979;5980;5981;5982 5980 5 ELRENTQTTIK Unmodified 1331.7045 0.70449327 984 P61978-3;P61978-2;B4DFF1;P61978;Q5T6W5;Q5T6W2;Q5T6W1 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 51.882 46.026 3 1.2664E-12 1 33062 20150910_Q1_SA_NiHu_Masterprac_group10_B 113.69 51.348 120900000 0 34019000 30965000 9189400 9832600 36895000 2018 984 1993 8975;8976;8977;8978;8979 5983 5983 1 ELRNQTPAPSAAQTSAPSK Unmodified 1952.9916 0.99156716 437 E9PHD6;Q9P265 DIP2B Disco-interacting protein 2 homolog B yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 66.478 60.312 3 0.00044366 4 43784 20150910_Q1_SA_NiHu_Masterprac_group10_C 66.448 43.566 5830800 960840 0 0 1501400 1693900 1674600 2019 437 1994 8980;8981;8982;8983 5984;5985;5986;5987 5987 4 ELRNVLLNNSEK Unmodified 1427.7732 0.77324153 1050 Q08J23-2;Q08J23;G3V1R4 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 105.58 96.056 3 0.00056847 2 65727 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.169 46.644 4071800 0 1823800 0 0 2248000 0 2020 1050 1995 8984;8985;8986 5988;5989 5988 2 ELSAALQDK Unmodified 973.50803 0.50802529 1121 Q14980-2;Q14980;Q9BTE9;F5H4J1;F5H6Y5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 75.814 69.145 2 0.024935 1 48087 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.113 8.298 4396500 0 1522400 0 0 421010 2453100 2021 1121 1996 8987;8988;8989 5990 5990 1 ELSEMRAPPAATNSSK Unmodified 1687.8199 0.81993373 455 E9PKP7;P17480-2;P17480;E9PLT2 UBTF Nucleolar transcription factor 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 81.422 74.303 3 0.012922 1 56565 20150910_Q1_SA_NiHu_Masterprac_group15_C 43.861 28.221 3223100 846720 537040 0 0 832960 1006400 2022 455 1997 8990;8991;8992;8993 5991 5991 1 ELSPAALEK Unmodified 956.51786 0.51786169 749 O75683 SURF6 Surfeit locus protein 6 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 99.59 91.461 2 0.021779 2 62316 20150910_Q1_SA_NiHu_Masterprac_group10_C 68.847 27.965 5915700 1130200 759260 869050 529470 1517800 1109900 2023 749 1998 8994;8995;8996;8997;8998;8999 5992;5993 5993 2 ELSQLQAAQEK Unmodified 1243.6408 0.64083038 936 P49454 CENPF Centromere protein F yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 74.689 72.606 2 0.025196 1 50299 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.338 39.652 751540 0 212660 0 0 0 538890 2024 936 1999 9000;9001 5994 5994 0 ELSQLQAAQEKQK Unmodified 1499.7944 0.79437091 936 P49454 CENPF Centromere protein F yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 68.085 60.874 3 0.001312 2 42721 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.805 40.561 8998000 999450 2014500 1944400 559260 606600 2873900 2025 936 2000 9002;9003;9004;9005;9006;9007 5995;5996 5995 2 ELSQNTDESGLNDEAIAK Unmodified 1932.8912 0.891244 896 P35251-2;P35251 RFC1 Replication factor C subunit 1 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 104.26 98.672 2 0.007896 3 67182 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.955 34.143 7646000 0 2465100 1615400 896400 0 2669100 2026 896 2001 9008;9009;9010;9011 5997;5998;5999 5998 3 ELSSALTTPEMQK Unmodified 1433.7072 0.70719538 1580 Q9P2W1 PSMC3IP Homologous-pairing protein 2 homolog yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 114.43 111.35 2 0.02658 1 73024 20150910_Q1_SA_NiHu_Masterprac_group10_B 45.825 28.709 4548300 0 1361000 0 0 0 3187300 2027 1580 2002 9012;9013 6000 6000 1 ELSVEEQIKR Unmodified 1229.6616 0.66156582 107 F8VQE1;Q9UHB6-2;B4DN52;Q9UHB6;Q9UHB6-4;F8VS07;Q9UHB6-3 LIMA1 LIM domain and actin-binding protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 92.821 83.546 3 0.0056164 1 56826 20150910_Q1_SA_NiHu_Masterprac_group10_B 72.243 47.117 1848400 629310 779960 0 0 439110 0 2028 107 2003 9014;9015;9016 6001 6001 1 ELTAPDENIPAK Unmodified 1296.6561 0.65614609 825 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 96.473 94.291 2 0.0017931 2 64370 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.548 58.89 3146500 0 1242600 0 0 0 1903900 2029 825 2004 9017;9018 6002;6003 6002 2 ELTEEQQNLQK Unmodified 1358.6678 0.66777341 829 P12757-5;P12757;P12757-3 SKIL Ski-like protein yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 68.464 60.123 2 0.0041726 4 42547 20150910_Q1_SA_NiHu_Masterprac_group10_B 78.342 46.047 3372600 305940 1547400 498050 193610 827580 0 2030 829 2005 9019;9020;9021;9022;9023 6004;6005;6006;6007 6006 3 ELVELNK Unmodified 843.47018 0.47018322 768 O95239;O95239-2 KIF4A Chromosome-associated kinesin KIF4A yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 88.167 79.519 2 0.014444 2 59664 20150910_Q1_SA_NiHu_Masterprac_group15_C 102.77 5.3007 9441200 0 0 1839600 998490 1849600 4753500 2031 768 2006 9024;9025;9026;9027 6008;6009 6009 2 ELYGVGVEK Unmodified 992.51786 0.51786169 270 C9JU95;P40938 RFC3 Replication factor C subunit 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 97.181 90.178 2 0.0071717 2 61717 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.029 16.15 15974000 0 2187200 0 0 2410400 11376000 2032 270 2007 9028;9029;9030 6010;6011 6010 2 ELYIQHAK Unmodified 1000.5342 0.53418046 1019 Q00059;A8MRB2 TFAM Transcription factor A, mitochondrial yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 61.394 51.869 2 0.0061239 2 42760 20150910_Q1_SA_NiHu_Masterprac_group13_C 95.352 38.805 4895300 684460 1201500 2636900 0 372400 0 2033 1019 2008 9031;9032;9033;9034 6012;6013 6012 2 ELYSSGEFSSGRK Unmodified 1445.6787 0.67867245 1393 Q96HW7;Q96HW7-2;Q96HW7-3;Q96LV5;Q2T9F4 INTS4;INTS4L1;INTS4L2 Integrator complex subunit 4;Integrator complex subunit 4-like protein 1;Integrator complex subunit 4-like protein 2 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 85.867 77.315 3 1.8048E-09 3 53393 20150910_Q1_SA_NiHu_Masterprac_group15_B 103.43 85.227 6873200 232860 0 881810 463850 1803900 3490700 2034 1393 2009 9035;9036;9037;9038;9039 6014;6015;6016 6015 3 ELYTVVQHVK Unmodified 1214.6659 0.66592292 1253 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 WAPAL Wings apart-like protein homolog yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 2 2 2 2 103.61 94.851 2;3 0.011658 4 64774 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.847 36.096 18480000 718870 1429300 2160900 822400 3878600 9470200 2035 1253 2010 9040;9041;9042;9043;9044;9045;9046;9047;9048;9049 6017;6018;6019;6020 6018 4 EMAAASAAAISGAGR Unmodified 1332.6456 0.64559818 1115 Q14807;H3BQB9 KIF22 Kinesin-like protein KIF22 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 99.925 92.264 2 2.9719E-30 1 62984 20150910_Q1_SA_NiHu_Masterprac_group15_B 113.43 86.103 11067000 0 2167500 1621500 673500 2104400 4500100 2036 1115 2011 9050;9051;9052;9053;9054 6021 6021 1 EMAAQIREVEQSR Unmodified 1545.7569 0.75693954 1263 Q86UT8;E9PJ16 CCDC84 Coiled-coil domain-containing protein 84 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 94.924 93.116 3 0.0022757 1 62561 20150910_Q1_SA_NiHu_Masterprac_group10_B 68.515 41.186 8524800 0 8524800 0 0 0 0 2037 1263 2012 9055 6022 6022 1 EMANAAQPEESTK Unmodified 1404.6191 0.61910866 1304 Q8N5P1 ZC3H8 Zinc finger CCCH domain-containing protein 8 yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 49.166 43.834 2 0.0022325 3 31460 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.019 50.246 3478500 0 680800 0 0 1294600 1503100 2038 1304 2013 9056;9057;9058 6023;6024;6025 6023 3 EMANAAQPEESTKK Unmodified 1532.7141 0.71407167 1304 Q8N5P1 ZC3H8 Zinc finger CCCH domain-containing protein 8 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 39.217 34.78 3 0.0031461 1 27978 20150910_Q1_SA_NiHu_Masterprac_group13_C 54.871 37.276 2266100 350730 554640 868940 491830 0 0 2039 1304 2014 9059;9060;9061;9062 6026 6026 1 EMAPVPGTTTTTTSVK Unmodified 1619.8076 0.80763771 634 O75150-4;H3BP71;O75150;F8W8Z4;O75150-3 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 102.48 95.161 2 0.0024129 2 64938 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.186 31.079 2761800 0 538200 491680 0 0 1731900 2040 634 2015 9063;9064;9065 6027;6028 6027 2 EMAPVPGTTTTTTSVKK Unmodified 1747.9026 0.90260073 634 O75150-4;H3BP71;O75150;F8W8Z4;O75150-3 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 88.71 79.827 3 0.0059666 4 61572 20150910_Q1_SA_NiHu_Masterprac_group13_C 42.149 29.617 6254700 833150 1116900 2426000 862940 1015700 0 2041 634 2016 9066;9067;9068;9069;9070 6029;6030;6031;6032 6029 4 EMAQQELSSQK Unmodified 1277.5922 0.59216562 1128 Q15058 KIF14 Kinesin-like protein KIF14 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 54.607 53.553 2 0.0042905 1 38185 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.179 45.538 659150 0 0 0 0 0 659150 2042 1128 2017 9071 6033 6033 1 EMCDVEQVLSK Unmodified 1336.6003 0.60028747 768 O95239;F5H4Q9 KIF4A Chromosome-associated kinesin KIF4A yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 130.98 121.49 2 7.0863E-55 7 78245 20150910_Q1_SA_NiHu_Masterprac_group10_C 136.96 100.64 69062000 8430500 20863000 18486000 1992400 1587200 17703000 2043 768 2018 9072;9073;9074;9075;9076;9077 6034;6035;6036;6037;6038;6039;6040 6040 7 EMEAQQAALDPALK Unmodified 1513.7446 0.74464352 906 P39880-2;P39880;P39880-3;P39880-4;P39880-5;P39880-6 CUX1 Homeobox protein cut-like 1 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 122.64 115.59 2 8.0105E-42 3 78920 20150910_Q1_SA_NiHu_Masterprac_group15_B 121.42 93.135 3812500 1218400 1075500 0 0 0 1518500 2044 906 2019 9078;9079;9080 6041;6042;6043 6041 3 EMEREAEYEESVAK Unmodified 1698.7407 0.74068036 1617 Q9UNX4 WDR3 WD repeat-containing protein 3 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 80.084 74.87 3 0.028434 1 58624 20150910_Q1_SA_NiHu_Masterprac_group13_C 41.996 32.693 2298300 0 571910 736120 329430 0 660810 2045 1617 2020 9081;9082;9083;9084 6044 6044 1 EMESIDQYIER Unmodified 1411.6289 0.62894506 1463;1464 Q9BXS6-2;Q9BXS6-3;Q9BXS6;E7ERR5;Q9BXS6-5;E9PB35;H0YMD2;Q9BXS6-4 NUSAP1 Nucleolar and spindle-associated protein 1 no no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.73 132.12 2 0.01585 1 85689 20150910_Q1_SA_NiHu_Masterprac_group10_B 79.492 52.162 5142800 0 5142800 0 0 0 0 2046 1463;1464 2021 9085 6045 6045 0 EMFEDTVEER Oxidation (M) 1299.5289 0.52889667 1153 Q16576;E9PC52 RBBP7 Histone-binding protein RBBP7 yes no 0 1 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 3 87.69 81.494 2 0.00019541 6 55581 20150910_Q1_SA_NiHu_Masterprac_group15_B 108.43 79.723 19139000 0 4460800 3821100 0 0 10857000 2047 1153 2022 9086;9087;9088;9089;9090;9091;9092 6046;6047;6048;6049;6050;6051 6049 144 6 EMFEDTVEER Unmodified 1283.534 0.53398204 1153 Q16576;E9PC52 RBBP7 Histone-binding protein RBBP7 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 110.9 100.95 2 0.002929 2 66861 20150910_Q1_SA_NiHu_Masterprac_group10_B 94.363 12.592 51439000 1493700 23676000 22853000 1259500 2156200 0 2048 1153 2022 9093;9094;9095;9096;9097 6052;6053 6053 2 EMFEDTVEERVINEEYK Oxidation (M) 2174.9678 0.96777976 1153 Q16576;E9PC52 RBBP7 Histone-binding protein RBBP7 yes no 0 1 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 132.84 119.24 3 3.9724E-180 2 83795 20150910_Q1_SA_NiHu_Masterprac_group13_C 155.37 135.98 189160000 0 0 62738000 0 59577000 66840000 2049 1153 2023 9098;9099;9100 6054;6055 6054 144 2 EMGFTNMTEIQHK Unmodified 1564.7014 0.7013985 1550 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 126.2 115.93 3 0.0042879 2 79731 20150910_Q1_SA_NiHu_Masterprac_group15_C 61.11 47.071 21104000 0 2727000 2716100 0 7931000 7729500 2050 1550 2024 9101;9102;9103;9104 6056;6057 6057 2 EMGQMQVLQMK Unmodified 1321.6192 0.61924877 1362 Q92878-2;Q92878;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 132.53 114.69 2 0.0037621 1 81574 20150910_Q1_SA_NiHu_Masterprac_group15_C 80.706 34.705 4717800 0 0 0 0 4717800 0 2051 1362 2025 9105 6058 6058 1 EMIELRQQLDKER Unmodified 1686.8723 0.87230365 1029 Q01664;I3L254 TFAP4 Transcription factor AP-4 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 110.04 101.1 3 0.0069682 1 69046 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.864 38.2 12557000 706010 1794900 3651000 0 0 6405200 2052 1029 2026 9106;9107;9108;9109 6059 6059 1 EMQLRQEEER Unmodified 1346.6249 0.62486274 865 P23246;P23246-2;H0Y9K7 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 56.196 49.871 3 0.0087826 2 35699 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.916 51.365 5635700 685890 587270 636340 342770 1569300 1814200 2053 865 2027 9110;9111;9112;9113;9114;9115 6060;6061 6060 2 EMTLDEWKAIQNKDR Unmodified 1875.9149 0.91489675 1316;1317 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein no no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 129.92 129.31 4 0.0022062 2 82799 20150910_Q1_SA_NiHu_Masterprac_group10_B 60.345 34.922 5268100 0 5268100 0 0 0 0 2054 1316;1317 2028 9116 6062;6063 6063 2 EMVGALVSDGLDRKEPR Oxidation (M) 1886.952 0.95201053 430 Q12873;E9PG89;Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 1 2 By matching By MS/MS By matching By matching By matching By matching 1 109.32 107.91 3 0.034458 1 71002 20150910_Q1_SA_NiHu_Masterprac_group10_B 51.073 33.057 885450 0 885450 0 0 0 0 2055 430 2029 9117 6064 6064 47 1 EMVGALVSDGLDRKEPR Unmodified 1870.9571 0.95709591 430 Q12873;E9PG89;Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 129.45 129.14 3 0.005129 1 82407 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.68 23.916 47494000 0 46771000 0 723940 0 0 2056 430 2029 9118;9119 6065 6065 1 EMVICSEASSTYQR Unmodified 1659.7233 0.72325615 1066 Q12986;Q12986-2;E9PG33 NFX1 Transcriptional repressor NF-X1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 106.25 102.79 2 0.0076264 1 70265 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.891 33.76 710940 0 0 0 0 0 710940 2057 1066 2030 9120 6066 6066 1 EMVLEIIREK Unmodified 1258.6955 0.69550848 1394 Q96I24;A6NJ37;Q96I24-2 FUBP3 Far upstream element-binding protein 3 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 133.33 130.85 2;3 3.1672E-34 2 88572 20150910_Q1_SA_NiHu_Masterprac_group15_B 132.32 82.901 19331000 0 0 0 4548000 0 14783000 2058 1394 2031 9121;9122 6067;6068 6068 2 ENAGEDPGLAR Unmodified 1127.5207 0.52071524 1013;1014 P81605;P81605-2 DCD Dermcidin;Survival-promoting peptide;DCD-1 no no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 54.293 48.135 2 9.3508E-13 4 39006 20150910_Q1_SA_NiHu_Masterprac_group13_C 115 90.495 85631000 7165800 25154000 26732000 4075700 6924500 15579000 2059 1013;1014 2032 9123;9124;9125;9126;9127;9128 6069;6070;6071;6072 6070 4 ENAGEDPGLARQAPKPR Unmodified 1804.918 0.91800829 1013;1014 P81605;P81605-2 DCD Dermcidin;Survival-promoting peptide;DCD-1 no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 66.65 59.523 4 0.010794 1 42027 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.743 27.997 23852000 870910 11344000 3748900 1000400 2936100 3951900 2060 1013;1014 2033 9129;9130;9131;9132;9133;9134 6073 6073 1 ENCISGPVKATAPVGGPK Unmodified 1780.9142 0.91416847 698 O14965;A3KFJ0;Q5QPD4;A3KFJ1;Q5QPD2;Q5QPD1;A3KFJ2 AURKA Aurora kinase A yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 2 100.58 91.15 2;3 3.0278E-58 7 62228 20150910_Q1_SA_NiHu_Masterprac_group15_B 122.44 122.44 162430000 13675000 45653000 25426000 10603000 12131000 54941000 2061 698 2034 9135;9136;9137;9138;9139;9140;9141;9142;9143 6074;6075;6076;6077;6078;6079;6080 6077 7 ENECDPEEDLGK Unmodified 1433.5617 0.56165336 755 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 74.757 71.847 2 0.016722 1 49972 20150910_Q1_SA_NiHu_Masterprac_group10_B 53.448 41.529 945710 0 945710 0 0 0 0 2062 755 2035 9144 6081 6081 1 ENEFSFEDNAIRGGK Unmodified 1711.7802 0.7801774 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 128.03 123.06 3 0.00082911 3 83155 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.759 50.227 4147200 0 0 0 0 0 4147200 2063 486 2036 9145;9146 6082;6083;6084 6082 3 ENEVEEVKEEGPK Unmodified 1514.71 0.71003215 1316;1317 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein no no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 2 1 1 2 75.553 67.777 2;3 0.0011282 5 47020 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.279 60.705 18775000 1049300 3654100 2392400 956570 1380900 9341700 2064 1316;1317 2037 9147;9148;9149;9150;9151;9152;9153;9154 6085;6086;6087;6088;6089 6085 5 ENGFSSPPQIK Unmodified 1202.5932 0.5931519 825 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 102.44 94.322 2 0.0085141 1 63807 20150910_Q1_SA_NiHu_Masterprac_group10_C 66.989 44.303 6663300 1278300 1216600 0 0 2915200 1253300 2065 825 2038 9155;9156;9157;9158 6090 6090 1 ENGQPQNCGGQWR Unmodified 1529.643 0.64297242 306 Q5D862;CON__Q5D862 FLG2 Filaggrin-2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 62.037 54.417 2 0.029485 1 38677 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.829 31.551 1259400 0 0 448420 0 0 811020 + 2066 306 2039 9159;9160 6091 6091 1 ENIELKENDEK Unmodified 1359.6518 0.65178899 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 3 2 2 2 2 57.608 51.504 2;3 1.0729E-08 6 36818 20150910_Q1_SA_NiHu_Masterprac_group15_B 112.84 53.005 27167000 1619100 6216400 7171000 1315500 3215400 7629700 2067 919;920 2040 9161;9162;9163;9164;9165;9166;9167;9168;9169;9170;9171;9172 6092;6093;6094;6095;6096;6097 6095 6 ENIELKENDEKMK Unmodified 1618.7872 0.78723662 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 61.689 60.534 3 0.029289 1 42399 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.205 34.655 2553600 0 0 0 0 0 2553600 2068 919;920 2041 9173 6098 6098 1 ENINDEPVDMSAR Unmodified 1488.6515 0.65147142 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 99.56 92.407 2 0.038833 1 68946 20150910_Q1_SA_NiHu_Masterprac_group13_C 41.621 22.89 5451700 0 1586700 1053600 0 0 2811400 2069 1344 2042 9174;9175;9176 6099 6099 1 ENINDEPVDMSARR Unmodified 1644.7526 0.75258245 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 2 2 88.486 81.467 2;3 0.00085777 3 55751 20150910_Q1_SA_NiHu_Masterprac_group10_B 67.997 19.953 18896000 0 5994000 3224900 0 0 9676800 2070 1344 2043 9177;9178;9179;9180;9181;9182 6100;6101;6102 6102 3 ENKTIVFVETK Unmodified 1306.7133 0.71326704 853 P17844;E7ETL9 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 2 2 104.45 94.661 2;3 0.023773 2 64610 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.6 36.006 8157200 0 1570100 1026200 0 1764200 3796800 2071 853 2044 9183;9184;9185;9186;9187;9188 6103;6104 6103 2 ENLAESSKPTAGGSR Unmodified 1502.7325 0.73249893 936 P49454 CENPF Centromere protein F yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 46.567 39.998 3 0.00066969 2 28454 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.475 74.475 3401800 0 625880 738570 0 517390 1520000 2072 936 2045 9189;9190;9191;9192 6105;6106 6105 2 ENLCSTFCK Unmodified 1157.4845 0.48452943 289 CON__P02663 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 95.98 87.802 2 0.0070183 7 64766 20150910_Q1_SA_NiHu_Masterprac_group15_C 96.665 61.513 66718000 9254900 15643000 7171300 4533600 12698000 17417000 + 2073 289 2046 9193;9194;9195;9196;9197;9198;9199 6107;6108;6109;6110;6111;6112;6113 6110 7 ENNENSNSNSHNPLNGSGK Unmodified 2011.858 0.85798681 1525 Q9NPC8 SIX2 Homeobox protein SIX2 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 44.831 38.388 3 0.014847 2 27197 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.227 19.911 3487600 0 708270 1003500 0 340460 1435300 2074 1525 2047 9200;9201;9202;9203 6114;6115 6114 2 ENPVKGSPGVPSFAAGPPISEGK Unmodified 2221.1379 0.13789705 601 Q2L6G8;Q15517;G8JLG2 CDSN Corneodesmosin yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 132.15 123.06 3 3.0823E-10 4 83292 20150910_Q1_SA_NiHu_Masterprac_group13_C 80.002 66.394 135150000 0 18887000 53193000 58576000 4490500 0 2075 601 2048 9204;9205;9206;9207 6116;6117;6118;6119 6118 4 ENQIPEEAGSSGLGK Unmodified 1514.7213 0.72126554 1124 Q15004;H0YMA4;H0YKX3 KIAA0101 PCNA-associated factor yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 92.404 85.363 2 0.00045512 5 57765 20150910_Q1_SA_NiHu_Masterprac_group13_B 71.529 53.9 92544000 1570100 20101000 13384000 2179500 7293500 48015000 2076 1124 2049 9208;9209;9210;9211;9212;9213;9214 6120;6121;6122;6123;6124 6120 5 ENQIPEEAGSSGLGKAK Unmodified 1713.8533 0.85334235 1124 Q15004;H0YMA4;H0YKX3 KIAA0101 PCNA-associated factor yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 82.958 76.158 2;3 3.2038E-182 7 52425 20150910_Q1_SA_NiHu_Masterprac_group15_B 160.04 113.34 65507000 1897400 19171000 11274000 3489200 5672100 24003000 2077 1124 2050 9215;9216;9217;9218;9219;9220;9221;9222;9223;9224;9225 6125;6126;6127;6128;6129;6130;6131 6127 7 ENRNHLLPDIVTCVQSSRK Unmodified 2265.1648 0.16479728 1444 Q9BSD7 NTPCR Cancer-related nucleoside-triphosphatase yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 131.56 126.6 4 2.198E-10 1 86442 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.718 68.478 10108000 0 0 0 0 0 10108000 2078 1444 2051 9226 6132 6132 1 ENTDSVVMQPK Unmodified 1246.5864 0.58635197 1037 Q03701;F5H3Y6 CEBPZ CCAAT/enhancer-binding protein zeta yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 69.301 67.218 2 0.019417 1 46761 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.205 13.962 1592100 0 285180 0 0 0 1306900 2079 1037 2052 9227;9228 6133 6133 1 ENVLQYCR Unmodified 1080.5022 0.50222841 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 94.203 85.053 2 0.02572 1 58375 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.741 66.58 1917000 0 0 0 0 409720 1507300 2080 919 2053 9229;9230 6134 6134 0 ENVLQYCRK Unmodified 1208.5972 0.59719142 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 73.487 66.248 3 0.004218 4 46311 20150910_Q1_SA_NiHu_Masterprac_group13_B 87.696 48.982 17451000 0 5082500 2240400 1005900 2818600 6303700 2081 919 2054 9231;9232;9233;9234;9235 6135;6136;6137;6138 6135 4 ENVNATENCISAVGK Unmodified 1604.7464 0.74643444 155 B4E0R6;O00410-2;O00410;H0Y8C6;O00410-3 IPO5 Importin-5 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 101.99 91.812 2 0.0035326 2 62135 20150910_Q1_SA_NiHu_Masterprac_group10_C 56.527 46.534 722630 722630 0 0 0 0 0 2082 155 2055 9236;9237 6139;6140 6140 2 ENVSVSVQPGSSSVSRAGSLHK Unmodified 2211.1244 0.12437225 510 F5H1N7;Q6ZU35 KIAA1211 Uncharacterized protein KIAA1211 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 97.749 89.153 4 0.012434 1 67282 20150910_Q1_SA_NiHu_Masterprac_group13_C 38.721 27.378 1092900 0 0 803220 289690 0 0 2083 510 2056 9238;9239 6141 6141 1 ENVVQKTPVVQNAASIVQPSPAHVGQQGLSK Unmodified 3209.7157 0.71567366 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.27 130.66 4 0.00034724 1 84112 20150910_Q1_SA_NiHu_Masterprac_group10_B 43.92 37.304 6875300 0 6875300 0 0 0 0 2084 1344 2057 9240 6142 6142 0 ENYDRGYSSLLK Unmodified 1443.6994 0.69940789 853 P17844;E7ETL9 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 2 2 1 1 2 2 116.15 106.95 2;3 0.0047244 4 73221 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.124 33.622 34667000 2041000 5925000 903070 1245100 7694500 16859000 2085 853 2058 9241;9242;9243;9244;9245;9246;9247;9248;9249;9250 6143;6144;6145;6146 6144 4 EPEVELHPLSR Unmodified 1304.6725 0.67246486 1319 Q8ND61-2;Q8ND61 C3orf20 Uncharacterized protein C3orf20 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 124.78 122.93 2 0.0021961 1 78833 20150910_Q1_SA_NiHu_Masterprac_group10_B 88.596 48.811 8070600 0 1263900 0 1245000 0 5561700 2086 1319 2059 9251;9252;9253 6147 6147 1 EPFTIAQGK Unmodified 989.5182 0.51819605 901 P35659;D6R9L5;D6RDA2 DEK Protein DEK yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 98.482 88.608 2 0.040191 1 60592 20150910_Q1_SA_NiHu_Masterprac_group10_C 59.931 38.984 973020 973020 0 0 0 0 0 2087 901 2060 9254 6148 6148 1 EPFTIAQGKGQK Unmodified 1302.6932 0.6932003 901 P35659;D6R9L5;D6RDA2 DEK Protein DEK yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 77.326 69.741 2;3 9.3959E-18 11 55373 20150910_Q1_SA_NiHu_Masterprac_group13_C 115.29 59.934 49963000 9518200 6517100 6247900 3541900 12150000 11988000 2088 901 2061 9255;9256;9257;9258;9259;9260;9261;9262;9263;9264;9265;9266;9267 6149;6150;6151;6152;6153;6154;6155;6156;6157;6158;6159 6150 11 EPLVATNLPGRGQLQK Unmodified 1719.9632 0.96316757 913 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 124.9 113.67 3 0.0028147 4 75628 20150910_Q1_SA_NiHu_Masterprac_group10_C 67.019 52.619 11964000 6955600 0 4311500 696580 0 0 2089 913 2062 9268;9269;9270 6160;6161;6162;6163 6162 4 EPTPVLGSGAAAAGR Unmodified 1352.7048 0.70482762 913;914 P42166;P42167;P42167-2;G5E972 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 97.103 89.502 2 0.0054977 1 60677 20150910_Q1_SA_NiHu_Masterprac_group10_B 52.42 40.837 18054000 0 4946700 3263300 1156700 426700 8260300 2090 913;914 2063 9271;9272;9273;9274;9275 6164 6164 1 EQAEQWLK Unmodified 1030.5084 0.50835964 423 Q8N556;E9PDT7 AFAP1 Actin filament-associated protein 1 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 2 1 2 104.28 92.995 2 0.02381 2 63022 20150910_Q1_SA_NiHu_Masterprac_group10_C 76.679 42.426 15729000 3227100 3614100 0 0 8887600 0 2091 423 2064 9276;9277;9278;9279;9280 6165;6166 6166 2 EQCAEENIPASSLNKGK Unmodified 1873.884 0.88399055 71 C9J0C6;G5E9X1;B3KQH5;Q9UL03-3;Q9UL03 INTS6 Integrator complex subunit 6 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 83.513 75.935 3 0.0092594 1 52400 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.045 29.165 9353100 960060 1825200 1718600 1175400 1315700 2358200 2092 71 2065 9281;9282;9283;9284;9285;9286 6167 6167 1 EQCCYNCGKPGHLAR Unmodified 1848.7818 0.78179086 112;992 B4DP17;P62633-3;P62633-2;P62633;P62633-5;E9PDR7;P62633-4 CNBP Cellular nucleic acid-binding protein no no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 2 2 2 1 2 52.495 47.165 3;4 0.0094191 3 33608 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.621 44.195 13584000 1371100 2450900 1928500 1125300 2564700 4143300 2093 112;992 2066 9287;9288;9289;9290;9291;9292;9293;9294;9295;9296 6168;6169;6170 6169 3 EQDVEVLEPLK Unmodified 1297.6765 0.67654718 1061 Q12830-4;Q12830-2;Q12830 BPTF Nucleosome-remodeling factor subunit BPTF yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.98 131.38 2 0.0026815 1 84835 20150910_Q1_SA_NiHu_Masterprac_group10_B 86.288 30.567 5043600 0 5043600 0 0 0 0 2094 1061 2067 9297 6171 6171 1 EQDVKSPVPSLRPSSTGPSPSGGLSEEPAAK Unmodified 3090.5469 0.54693658 1466 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 129.36 124.4 4 0.024084 1 84121 20150910_Q1_SA_NiHu_Masterprac_group15_B 24.087 14.69 2240800 0 0 0 0 0 2240800 2095 1466 2068 9298 6172 6172 1 EQEAAMEIQEPAANK Unmodified 1657.7618 0.76175015 1353 Q92576-2;Q92576;E7EVH3;E7ER40 PHF3 PHD finger protein 3 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 2 1 1 92.9 90.868 2 3.3596E-262 5 62036 20150910_Q1_SA_NiHu_Masterprac_group15_B 184.01 173.28 8116800 0 3060600 0 0 0 5056300 2096 1353 2069 9299;9300;9301;9302 6173;6174;6175;6176;6177 6174 5 EQEPMPTVDSHEPR Unmodified 1650.7308 0.73078437 98 Q9H910;B4DLH4;H3BU16;Q9H910-2;A6NGP5 HN1L Hematological and neurological expressed 1-like protein yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 88.55 77.121 3 0.015141 2 53224 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.992 40.097 3688600 0 0 452570 0 1163700 2072300 2097 98 2070 9303;9304;9305 6178;6179 6178 2 EQESYDNRLLMGDER Unmodified 1853.8214 0.82139029 1270 Q86X95-2;Q86X95;F2Z3Q1 CIR1 Corepressor interacting with RBPJ 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 109.2 106.56 3 0.011729 2 72892 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.41 29.888 1844400 0 534920 0 0 0 1309500 2098 1270 2071 9306;9307 6180;6181 6180 2 EQESYDNRLLMGDERVK Unmodified 2080.9848 0.98476723 1270 Q86X95-2;Q86X95;F2Z3Q1 CIR1 Corepressor interacting with RBPJ 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 115.12 104.34 3 0.033303 1 71360 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.818 28.835 1565300 0 0 693610 0 0 871710 2099 1270 2072 9308;9309 6182 6182 1 EQEVPTFTELSRENDEEK Unmodified 2178.9917 0.99168632 136 B4DX32;O60870;F5GXB3 KIN DNA/RNA-binding protein KIN17 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 131.37 121.87 3 1.4257E-59 5 86215 20150910_Q1_SA_NiHu_Masterprac_group15_B 124.68 102.91 105840000 18166000 24189000 29488000 13645000 2205600 18150000 2100 136 2073 9310;9311;9312;9313;9314;9315 6183;6184;6185;6186;6187 6184 5 EQFEGLGSTPDAK Unmodified 1377.6412 0.64122431 1318 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 106.87 98.177 2 0.0013462 2 70634 20150910_Q1_SA_NiHu_Masterprac_group15_C 76.01 47.313 6985000 360670 1664600 640500 1040500 1328000 1950800 2101 1318 2074 9316;9317;9318;9319;9320;9321 6188;6189 6188 2 EQGIQDPIKGGDVRDK Unmodified 1753.8959 0.89587586 1281 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 84.126 76.726 4 0.039696 1 52908 20150910_Q1_SA_NiHu_Masterprac_group10_B 35.836 10.509 5436600 0 953780 1049300 1048400 898760 1486400 2102 1281 2075 9322;9323;9324;9325;9326 6190 6190 1 EQGPYETYEGSPVSK Unmodified 1669.7471 0.74714594 870 P23921;H0YFI0;E9PD78;E9PL69;F5H861 RRM1 Ribonucleoside-diphosphate reductase large subunit;Ribonucleoside-diphosphate reductase yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 100.58 92.396 2 2.5388E-14 6 62057 20150910_Q1_SA_NiHu_Masterprac_group13_B 106.6 83.618 35091000 6498100 7493900 3287600 1228400 5557400 11025000 2103 870 2076 9327;9328;9329;9330;9331;9332 6191;6192;6193;6194;6195;6196 6191 6 EQHQHSDLDSNQTHSSGTVTSSSSTANIDDLKK Unmodified 3553.6153 0.61530351 1093 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 85.868 78.273 5 4.643E-06 4 54362 20150910_Q1_SA_NiHu_Masterprac_group10_C 36.347 33.994 19902000 3346300 2848200 3261800 3943200 3142200 3360000 2104 1093 2077 9333;9334;9335;9336;9337;9338 6197;6198;6199;6200 6200 3 EQILEEFSK Unmodified 1121.5605 0.56045479 731 O60506-2;O60506;O60506-4;O60506-3;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 132.43 114.69 2 0.030918 1 81523 20150910_Q1_SA_NiHu_Masterprac_group15_C 64.103 15.043 3896000 0 0 0 0 3896000 0 2105 731 2078 9339 6201 6201 1 EQITGQIDK Unmodified 1030.5295 0.52948901 1255 Q7Z6E9;Q7Z6E9-2;Q7Z6E9-4 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 64.85 58.011 2 0.015262 2 41041 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.228 14.549 5790700 0 1048700 713040 448820 1359700 2220400 2106 1255 2079 9340;9341;9342;9343;9344 6202;6203 6202 2 EQITQHIADLSSK Unmodified 1468.7522 0.75217174 947 P49916-2;P49916 LIG3 DNA ligase 3 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 113.86 102.73 3 0.016791 2 68872 20150910_Q1_SA_NiHu_Masterprac_group10_C 48.467 34.877 3882000 1786300 1828800 266860 0 0 0 2107 947 2080 9345;9346;9347 6204;6205 6205 2 EQIVPKPEEEVAQK Unmodified 1622.8516 0.85155143 855 P18621;B4E3C2 RPL17 60S ribosomal protein L17 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 93.17 85.341 3 0.0016976 4 57831 20150910_Q1_SA_NiHu_Masterprac_group10_B 67.952 51.066 19486000 4694600 2808900 2205200 3457500 574450 5745000 2108 855 2081 9348;9349;9350;9351;9352;9353 6206;6207;6208;6209 6208 4 EQIVPKPEEEVAQKK Unmodified 1750.9465 0.94651445 855 P18621;B4E3C2 RPL17 60S ribosomal protein L17 yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 1 85.39 74.907 3;4 6.5547E-05 6 57127 20150910_Q1_SA_NiHu_Masterprac_group15_C 89.507 75.335 31372000 7581700 0 5269600 2395700 13803000 2321600 2109 855 2082 9354;9355;9356;9357;9358;9359;9360;9361 6210;6211;6212;6213;6214;6215 6213 6 EQLDNQLDAYMSK Unmodified 1553.7032 0.70317264 1649 Q9Y3Y2-4;Q9Y3Y2;Q9Y3Y2-3 CHTOP Chromatin target of PRMT1 protein yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 132.45 123.34 2 1.4502E-46 4 83756 20150910_Q1_SA_NiHu_Masterprac_group13_C 127.36 104.21 36602000 0 7516700 13310000 12492000 3282900 0 2110 1649 2083 9362;9363;9364;9365 6216;6217;6218;6219 6217 3 EQLQSVTTNSGYTR Unmodified 1582.7587 0.75871368 1063 Q12888;Q12888-2;A6NNK5;F8VY86;C9JXV0 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 90.853 82.13 2 0.001007 2 56019 20150910_Q1_SA_NiHu_Masterprac_group13_B 85.45 56.547 2907600 0 0 1209700 662230 768940 266690 2111 1063 2084 9366;9367;9368;9369 6220;6221 6220 2 EQLQSVTTNSGYTRLSDVDANTAIK Unmodified 2710.341 0.34096655 1063 Q12888;Q12888-2;A6NNK5;F8VY86;C9JXV0 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.49 130.89 3 1.1708E-08 1 84330 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.589 42.915 8920200 0 8920200 0 0 0 0 2112 1063 2085 9370 6222 6222 1 EQLSAERQEQIKQR Unmodified 1741.9071 0.90710925 1625 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 2 53.071 47.095 3;4 7.744E-05 6 38968 20150910_Q1_SA_NiHu_Masterprac_group15_C 93.766 70.055 23781000 1657100 5046500 1985400 1078700 4290500 9722600 2113 1625 2086 9371;9372;9373;9374;9375;9376;9377;9378;9379;9380 6223;6224;6225;6226;6227;6228 6227 6 EQNLSSQVECLELEK Unmodified 1804.8513 0.85129344 936 P49454 CENPF Centromere protein F yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 132.55 132.25 2 1.4151E-05 1 85617 20150910_Q1_SA_NiHu_Masterprac_group10_B 91.355 53.24 20124000 0 17880000 0 2244000 0 0 2114 936 2087 9381;9382 6229 6229 1 EQNSPIYISR Unmodified 1205.6041 0.60405094 575 G3V1D4;Q9NUP9;O14910;H0YI92;H0YIA8;Q9HAP6 LIN7C;LIN7A;LIN7B Protein lin-7 homolog C;Protein lin-7 homolog A;Protein lin-7 homolog B yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 91.327 89.344 2 0.019616 1 61107 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.944 42.163 1352200 0 565450 0 0 0 786780 2115 575 2088 9383;9384 6230 6230 1 EQPPRFAQPGSFEYEYAMR Oxidation (M) 2318.0426 0.042616456 1133 Q15233;F5GYZ3;C9JYS8;H7C367 NONO Non-POU domain-containing octamer-binding protein yes no 0 1 1 By matching By MS/MS By matching By matching By matching By matching 1 131.94 131.33 3 0.012619 1 84820 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.94 43.686 5788600 0 5788600 0 0 0 0 2116 1133 2089 9385 6231 6231 141 1 EQPQLTSTCHIAISNSENLLGK Unmodified 2439.2064 0.20638732 919;920 P46013;F5H4V4;P46013-2;E7EN66 MKI67 Antigen KI-67 no no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.68 132.08 3 6.1316E-10 1 85643 20150910_Q1_SA_NiHu_Masterprac_group10_B 85.969 57.636 110680000 0 110680000 0 0 0 0 2117 919;920 2090 9386 6232 6232 1 EQPQPSGKQESGSEIHVEVK Unmodified 2192.0709 0.070939697 919;920 P46013;F5H4V4;P46013-2;E7EN66 MKI67 Antigen KI-67 no no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 2 1 2 1 81.002 71.71 3;4 2.0862E-06 3 49679 20150910_Q1_SA_NiHu_Masterprac_group10_B 84.249 68.242 29292000 0 19024000 4949100 0 4586400 732850 2118 919;920 2091 9387;9388;9389;9390;9391;9392 6233;6234;6235 6234 3 EQQCVVMAENSK Unmodified 1421.6279 0.6278992 295 CON__P06868 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 68.09 60.896 2 0.0018034 5 49288 20150910_Q1_SA_NiHu_Masterprac_group13_C 79.886 56.21 24018000 4875200 1378600 2776500 4036100 7168100 3783000 + 2119 295 2092 9393;9394;9395;9396;9397;9398 6236;6237;6238;6239;6240 6237 5 EQQLLSTLK Unmodified 1058.5972 0.59717465 768 O95239;O95239-2;F5H4Q9 KIF4A Chromosome-associated kinesin KIF4A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 119.2 109.1 2 0.022125 1 74459 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.657 9.9584 5813400 0 1637000 499930 0 636300 3040300 2120 768 2093 9399;9400;9401;9402 6241 6241 1 EQQLLSTLKCQDEELEK Unmodified 2090.0201 0.02014968 768 O95239;O95239-2;F5H4Q9 KIF4A Chromosome-associated kinesin KIF4A yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.65 131.04 3 2.4305E-181 1 84493 20150910_Q1_SA_NiHu_Masterprac_group10_B 155.37 90.27 63308000 0 63308000 0 0 0 0 2121 768 2094 9403 6242 6242 1 EQQSNIAVFQGK Unmodified 1347.6783 0.67827852 1322 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 103.64 95.269 2 3.9776E-07 3 65056 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.71 77.202 8025700 657950 987940 1085200 823160 1988000 2483500 2122 1322 2095 9404;9405;9406;9407;9408;9409 6243;6244;6245 6244 3 EQSQPCADNAVLSSGLTAAR Unmodified 2073.9749 0.97493082 647 H3BV19;H3BSA1;P19784 CSNK2A2 Casein kinase II subunit alpha' yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 130.27 129.96 2 0.0036524 1 83180 20150910_Q1_SA_NiHu_Masterprac_group10_B 47.016 36.402 2742100 0 1983100 0 758970 0 0 2123 647 2096 9410;9411 6246 6246 1 EQSTRSSGHSSSELSPDAVEK Unmodified 2217.0145 0.01454703 1623 Q9UQ35;F5GWZ7;Q9UQ35-2;I3L2L6 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 2 2 2 2 65.039 56.686 3;4 9.9618E-05 3 40264 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.93 45.076 12202000 1217400 4144200 3108200 0 1387800 2344000 2124 1623 2097 9412;9413;9414;9415;9416;9417;9418;9419;9420;9421 6247;6248;6249 6249 3 EQSVQEIPVSR Unmodified 1270.6517 0.65172941 295 CON__P06868 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 91.635 83.89 2 0.0057012 4 57371 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.176 25.896 10090000 1117100 1557000 1019800 853450 1975400 3567700 + 2125 295 2098 9422;9423;9424;9425;9426;9427 6250;6251;6252;6253 6252 4 EQTFSGGTSQDTK Unmodified 1384.6107 0.61065246 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 45.069 38.913 2 0.0022321 2 31140 20150910_Q1_SA_NiHu_Masterprac_group13_C 68.277 39.653 6783200 682430 1942400 3274600 645780 237980 0 2126 1639 2099 9428;9429;9430;9431;9432 6254;6255 6255 2 EQVANSAFVER Unmodified 1248.6099 0.6098646 805 P08238;H0Y6E4;E9PHI1;Q58FF7 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 87.601 81.786 2 0.010215 1 55936 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.64 29.885 5264900 827790 614880 0 631410 1400400 1790500 2127 805 2100 9433;9434;9435;9436;9437 6256 6256 1 EQVSPLETTLEK Unmodified 1372.7086 0.70857559 1362 Q92878-2;Q92878;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 121.87 119.49 2 0.0044546 2 81127 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.043 49.017 6419000 0 0 0 1559400 0 4859600 2128 1362 2101 9438;9439 6257;6258 6258 2 ERALQGSLGGVEK Unmodified 1342.7205 0.72047768 634 O75150-4;H3BP71;O75150;F8W8Z4;F6SYU7;Q6ZN99 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 79.052 73.838 3 0.012497 1 51191 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.3 21.703 4126400 0 1015600 1170300 266150 0 1674300 2129 634 2102 9440;9441;9442;9443 6259 6259 1 ERCLGPPTTPGPYR Unmodified 1599.7828 0.78276036 594 G5E9E2;Q5J9I4;P29372-2;P29372;A2IDA3 MPG DNA-3-methyladenine glycosylase yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 98.752 90.956 3 1.313E-41 3 66644 20150910_Q1_SA_NiHu_Masterprac_group15_C 119.25 93.022 42594000 369610 7930600 0 0 10170000 24123000 2130 594 2103 9444;9445;9446;9447 6260;6261;6262 6261 3 ERDQGGFGDRNEYGSR Unmodified 1841.8041 0.80410074 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 55.599 49.358 4 4.4113E-12 5 40538 20150910_Q1_SA_NiHu_Masterprac_group15_C 100.18 93.409 85329000 2656500 12600000 7776000 5644900 14041000 42611000 2131 1366 2104 9448;9449;9450;9451;9452;9453 6263;6264;6265;6266;6267 6266 5 ERENNENSNSNSHNPLNGSGK Unmodified 2297.0017 0.0016909327 1525 Q9NPC8 SIX2 Homeobox protein SIX2 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 38.702 33.897 4 1.2795E-05 3 23370 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.488 55.906 9393000 370920 2012500 2243000 536790 791480 3438300 2132 1525 2105 9454;9455;9456;9457;9458;9459 6268;6269;6270 6270 3 ERGDQTVLILHAK Unmodified 1478.8205 0.82052608 1042 Q06330;D6R927;Q06330-5;Q06330-4;Q06330-6;Q06330-7;D6RBQ8;D6RA45;D6RCM1;D6R946;D6RB37;D6REP3;D6RF98;D6RIV8;D6RAT2;D6RIZ8;D6R9X3;D6R9K5;D6REC2 RBPJ Recombining binding protein suppressor of hairless yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 97.864 88.841 3 0.0058853 1 60831 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.196 45.765 8854200 0 0 1920500 1461600 1827900 3644300 2133 1042 2106 9460;9461;9462;9463 6271 6271 1 ERHIDALEDK Unmodified 1224.6099 0.6098646 558 P49959-2;F8W7U8;P49959;B3KTC7 MRE11A Double-strand break repair protein MRE11A yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 55.168 49.111 3 0.02 1 35093 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.944 40.826 2137700 0 479880 214060 210410 536880 696510 2134 558 2107 9464;9465;9466;9467;9468 6272 6272 1 ERLPTTAQQEDPEK Unmodified 1640.8006 0.8005785 1171 Q4VC44-2;Q4VC44;Q4VC44-3;I3L287;Q4VC44-5;Q4VC44-4;I3L1A7;I3L188 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 71.141 62.267 3 0.0011279 4 43785 20150910_Q1_SA_NiHu_Masterprac_group10_B 74.966 46.684 7488900 0 1531200 1425600 0 1334900 3197200 2135 1171 2108 9469;9470;9471;9472 6273;6274;6275;6276 6276 3 ERPEGETGDLGK Unmodified 1286.6103 0.61025853 430 Q12873;E9PG89 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 42.54 37.893 2 0.0049112 1 30446 20150910_Q1_SA_NiHu_Masterprac_group13_C 85.45 56.379 4609100 0 1421800 2281600 0 0 905700 2136 430 2109 9473;9474;9475 6277 6277 1 ERPVQLGGVEQR Unmodified 1366.7317 0.73171107 1466 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 76.221 69.717 3 0.012101 1 48120 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.434 33.363 8402500 3392000 0 446710 2879700 0 1684100 2137 1466 2110 9476;9477;9478;9479 6278 6278 1 ERSGVSLAALKK Unmodified 1257.7405 0.74048484 818;843 P16403;P10412;P16402 HIST1H1C;HIST1H1E;HIST1H1D Histone H1.2;Histone H1.4;Histone H1.3 no no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 79.576 71.306 3 0.011072 1 50602 20150910_Q1_SA_NiHu_Masterprac_group10_C 69.352 25.85 1928600 1928600 0 0 0 0 0 2138 843;818 2111 9480 6279 6279 1 ERSSLLASRYDSPINSASHIPSSK Unmodified 2601.3147 0.31469222 13 O14639-4;O14639-3;O14639-5;Q5JVV3;H0Y3K7;F8WAB1;Q5T6N2;F8WAB0;O14639-2;F8W8M4;A6NKJ2;O14639;Q5T6N4;A6NCD9 ABLIM1 Actin-binding LIM protein 1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 129.94 111.95 4 0.00034916 1 80599 20150910_Q1_SA_NiHu_Masterprac_group13_C 53.454 31.606 3239900 0 0 3239900 0 0 0 2139 13 2112 9481 6280 6280 1 ERTEEPMETEPK Unmodified 1474.661 0.66097347 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 51.835 46.387 3 0.0020566 3 33392 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.326 62.736 4975600 0 1037800 837770 0 0 3100000 2140 486 2113 9482;9483;9484 6281;6282;6283 6282 3 ERTEEPMETEPKGAADVEK Unmodified 2144.9896 0.98957783 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 1 2 74.289 68.091 3;4 1.2258E-25 6 47243 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.28 101.28 39890000 474060 10781000 12810000 387330 0 15438000 2141 486 2114 9485;9486;9487;9488;9489;9490;9491;9492 6284;6285;6286;6287;6288;6289 6285 6 ERYVEVVPCSTEEMSR Unmodified 1969.8874 0.88736137 1498 Q9H6T0-2;Q9H6T0 ESRP2 Epithelial splicing regulatory protein 2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 116.96 110.42 3 0.027891 1 72313 20150910_Q1_SA_NiHu_Masterprac_group10_B 39.338 28.84 3359200 0 1191100 1436900 731200 0 0 2142 1498 2115 9493;9494;9495 6290 6290 1 ESAAHDYTLRELK Unmodified 1531.7631 0.76307078 1040 Q06124;Q06124-2;Q06124-3 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 87.627 80.687 3 1.1765E-15 6 60478 20150910_Q1_SA_NiHu_Masterprac_group15_C 110.98 76.476 20458000 2348100 2873000 2069900 1671100 3733500 7762600 2143 1040 2116 9496;9497;9498;9499;9500;9501;9502 6291;6292;6293;6294;6295;6296 6294 6 ESADGLQGETQLLVSR Unmodified 1701.8533 0.85334235 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 132.93 132.63 2 0.00026101 2 86053 20150910_Q1_SA_NiHu_Masterprac_group13_B 84.375 59.421 36648000 0 29824000 0 6824700 0 0 2144 919 2117 9503;9504 6297;6298 6297 2 ESADGLQGETQLLVSRK Unmodified 1829.9483 0.94830537 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 131.18 122.96 2;3 1.844E-73 9 77890 20150910_Q1_SA_NiHu_Masterprac_group10_C 126.16 90.504 263480000 50061000 89476000 86892000 26768000 6179300 4106500 2145 919 2118 9505;9506;9507;9508;9509;9510;9511 6299;6300;6301;6302;6303;6304;6305;6306;6307 6306 9 ESAIVSRPLNPFTAK Unmodified 1628.8886 0.88860564 1642 Q9Y314 NOSIP Nitric oxide synthase-interacting protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 1 132.4 121.22 2;3 0 9 84576 20150910_Q1_SA_NiHu_Masterprac_group10_B 185.86 142.83 189130000 60791000 0 50545000 64057000 13734000 0 2146 1642 2119 9512;9513;9514;9515;9516;9517;9518;9519;9520 6308;6309;6310;6311;6312;6313;6314;6315;6316 6314 9 ESAQAIEDLAGFKDPAAGHTEESMTDDK Unmodified 2962.3138 0.3138251 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 2 132.9 123.6 3;4 1.597E-30 3 83757 20150910_Q1_SA_NiHu_Masterprac_group13_C 88.709 81.965 65614000 0 0 20324000 0 0 45290000 2147 919;920 2120 9521;9522;9523 6317;6318;6319 6317 3 ESDCHYLEAR Unmodified 1278.5299 0.52989972 1515 Q9HAZ1;E7ES88;B7ZL31 CLK4 Dual specificity protein kinase CLK4 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 2 2 1 2 1 2 62.602 57.243 2;3 0.022451 2 40517 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.63 33.777 12795000 1713000 1420600 1189800 1234500 3264900 3971700 2148 1515 2121 9524;9525;9526;9527;9528;9529;9530;9531;9532;9533 6320;6321 6321 2 ESDTKNEVNGTSEDIK Unmodified 1764.8014 0.80136636 766 O95232;B4DJ96;H0YBV7;H0YAR4 LUC7L3 Luc7-like protein 3 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 56.336 48.846 3 0.0068919 3 40075 20150910_Q1_SA_NiHu_Masterprac_group15_C 47.217 28.58 12440000 1641600 2732700 1743800 0 1527200 4795100 2149 766 2122 9534;9535;9536;9537;9538 6322;6323;6324 6322 3 ESDTKNEVNGTSEDIKSEGDTQSN Unmodified 2583.1056 0.10560646 766 O95232 LUC7L3 Luc7-like protein 3 yes yes 0 0 2 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 69.511 62.411 3 8.6612E-30 4 44020 20150910_Q1_SA_NiHu_Masterprac_group10_B 98.76 86.835 14874000 0 2888700 4279400 1929400 2078900 3697500 2150 766 2123 9539;9540;9541;9542;9543 6325;6326;6327;6328 6327 4 ESDWDGIIACHQGK Unmodified 1614.7097 0.709655 1331 Q8NI36;D6R922 WDR36 WD repeat-containing protein 36 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 122.74 116.87 2;3 5.4986E-86 2 81631 20150910_Q1_SA_NiHu_Masterprac_group13_C 139.19 120.2 18345000 0 4328700 6100000 2290000 0 5626300 2151 1331 2124 9544;9545;9546;9547 6329;6330 6329 2 ESECITKPVSFLPQNK Unmodified 1875.94 0.94004887 750 O75691 UTP20 Small subunit processome component 20 homolog yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.45 130.85 3 0.03727 1 84268 20150910_Q1_SA_NiHu_Masterprac_group10_B 53.395 26.805 4638900 0 4638900 0 0 0 0 2152 750 2125 9548 6331 6331 0 ESEFDDEPKFMSK Unmodified 1587.6763 0.67628918 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 2 120.71 111.57 2;3 1.0633E-46 6 72718 20150910_Q1_SA_NiHu_Masterprac_group13_B 128.36 118.37 35412000 0 2365700 13098000 9025600 1849000 9074100 2153 1639 2126 9549;9550;9551;9552;9553;9554;9555;9556 6332;6333;6334;6335;6336;6337 6332 6 ESELPRRVNSASSSNPPAEVDPDTILK Unmodified 2907.4574 0.45739329 1465 Q9BY77;Q9BY77-2 POLDIP3 Polymerase delta-interacting protein 3 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 131.1 130.8 4 0.00098339 1 83854 20150910_Q1_SA_NiHu_Masterprac_group10_B 40.83 31.654 14634000 0 9758700 0 4875400 0 0 2154 1465 2127 9557;9558 6338 6338 1 ESEMTDLTRK Unmodified 1208.5707 0.5707019 1219 Q69YH5;E9PEI0 CDCA2 Cell division cycle-associated protein 2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 68.552 59.353 3 0.015 1 42203 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.785 30.013 1395100 0 664060 731000 0 0 0 2155 1219 2128 9559;9560 6339 6339 1 ESFQRFLENHEK Unmodified 1562.7478 0.74775506 438 E9PHJ7;O75400-2;O75400-3;F8W9L2;O75400 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 120.83 110.84 3 0.0018464 1 79881 20150910_Q1_SA_NiHu_Masterprac_group13_C 80.871 60.131 23002000 261250 6727200 13559000 0 0 2454300 2156 438 2129 9561;9562;9563;9564 6340 6340 1 ESGELYYSIEK Unmodified 1316.6136 0.61361257 1063 Q12888;Q12888-2;A6NNK5;F8VY86;H7BZY0 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 122.63 114.39 2 0.017447 1 75510 20150910_Q1_SA_NiHu_Masterprac_group10_C 57.52 33.244 5583700 2893900 2689800 0 0 0 0 2157 1063 2130 9565;9566 6341 6341 1 ESHRDVLPDKPAPGAVNVPAAGSHLGQGK Unmodified 2903.5002 0.50020158 1564 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 yes yes 0 0 2 By matching By matching By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 115.3 105.6 4;5 0.0014888 4 74766 20150910_Q1_SA_NiHu_Masterprac_group15_C 42.353 30.137 24491000 0 0 8547100 4010500 4329900 7603900 2158 1564 2131 9567;9568;9569;9570;9571;9572;9573;9574 6342;6343;6344;6345 6345 4 ESHRLPVDIAYK Unmodified 1426.7569 0.75686319 840 P15924;P15924-2 DSP Desmoplakin yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 110.05 102.4 3 0.00018486 1 67644 20150910_Q1_SA_NiHu_Masterprac_group10_B 96.604 63.516 5206500 0 1921000 1400100 0 0 1885400 2159 840 2132 9575;9576;9577 6346 6346 1 ESHWEENRNENSGNSWNK Unmodified 2215.9267 0.92673508 547 Q99590-2;F8VXG7;Q99590 SCAF11 Protein SCAF11 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 65.334 59.869 4 0.020316 2 47716 20150910_Q1_SA_NiHu_Masterprac_group15_C 38.808 29.118 4953800 0 0 0 1071800 1506700 2375200 2160 547 2133 9578;9579;9580 6347;6348 6348 2 ESLAGNKPANAVLHK Unmodified 1547.842 0.8419898 430;663 H7C0J3;H7C3H7;I3L229;Q12873;E9PG89;Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 74.312 67.032 3 0.0025558 1 46644 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.03 40.6 33270000 0 7418900 5874800 729400 1877100 17370000 2161 663;430 2134 9581;9582;9583;9584;9585 6349 6349 1 ESLAGNKPANAVLHKGK Unmodified 1732.9584 0.95841654 663 H7C0J3 CHD3 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 56.439 55.912 4 0.0031834 1 39452 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.305 36.887 2368000 0 0 0 507080 0 1861000 2162 663 2135 9586;9587 6350 6350 1 ESLGHWSQGLK Unmodified 1240.62 0.62003536 274 C9JZ40;Q7Z2E3-4;Q7Z2E3-5;Q7Z2E3-9;Q7Z2E3-10;Q7Z2E3-11;Q7Z2E3-7;Q7Z2E3;C9J8U3;Q6JV81;F8W6G5;Q7Z2E3-3 APTX Aprataxin yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 2 1 2 104.44 98.898 2;3 0.012444 3 67382 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.198 37.206 9707100 0 1848500 1930300 1748500 1435500 2744300 2163 274 2136 9588;9589;9590;9591;9592;9593;9594;9595 6351;6352;6353 6351 3 ESLKNVDENIRK Unmodified 1443.7682 0.76815616 1486 Q9H307;G3V5F0;G3V579 PNN Pinin yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 68.517 61.438 3 0.036767 1 43249 20150910_Q1_SA_NiHu_Masterprac_group10_B 84.821 57.145 12825000 0 1680100 712720 958090 5919500 3554300 2164 1486 2137 9596;9597;9598;9599;9600 6354 6354 0 ESMAGNKPANAVLHK Unmodified 1565.7984 0.79841043 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 63.968 57.008 3 0.00072722 5 46585 20150910_Q1_SA_NiHu_Masterprac_group13_C 70.628 47.45 60373000 1017500 8100300 18234000 1307600 3272000 28442000 2165 486 2138 9601;9602;9603;9604;9605;9606 6355;6356;6357;6358;6359 6356 5 ESPARSTPHRTPIITPNTK Unmodified 2102.1233 0.12325004 1533 Q9NQW6;Q9NQW6-2;H7C3S1 ANLN Actin-binding protein anillin yes no 0 0 2 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 69.955 62.644 4 0.0012358 2 44754 20150910_Q1_SA_NiHu_Masterprac_group10_C 55.437 41.735 44992000 4636600 6853100 11853000 9529200 7128700 4991600 2166 1533 2139 9607;9608;9609;9610;9611;9612 6360;6361 6361 2 ESPKQILDPAAR Unmodified 1323.7147 0.71466402 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 3 98.27 90.412 2;3 0.0018592 4 68034 20150910_Q1_SA_NiHu_Masterprac_group13_C 82.505 54.861 14816000 2227300 3946000 2726000 0 0 5917100 2167 919;920 2140 9613;9614;9615;9616;9617;9618 6362;6363;6364;6365 6362 4 ESPKQILDPAARVTGMK Unmodified 1839.9877 0.98766776 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 1 1 2 128.42 120.85 3;4 1.0812E-12 8 76812 20150910_Q1_SA_NiHu_Masterprac_group10_C 95.755 77.29 113870000 32699000 7927300 30725000 2907400 0 39611000 2168 919;920 2141 9619;9620;9621;9622;9623;9624;9625;9626 6366;6367;6368;6369;6370;6371;6372;6373 6372 8 ESPKQILDPAASVTGSR Unmodified 1754.9163 0.91627696 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 121.41 119.63 3 5.2598E-05 3 76670 20150910_Q1_SA_NiHu_Masterprac_group10_C 84.94 49.823 6324200 0 2445500 0 702280 0 3176400 2169 919;920 2142 9627;9628;9629;9630 6374;6375;6376 6376 3 ESPKQILDPAASVTGSRR Unmodified 1911.0174 0.017387984 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 112.79 104.77 4 0.0069895 1 74447 20150910_Q1_SA_NiHu_Masterprac_group15_C 44.045 30.795 8210600 0 462160 1550400 717910 2236900 3243200 2170 919;920 2143 9631;9632;9633;9634;9635 6377 6377 1 ESQGSSGPEFSCNSFLQEK Unmodified 2116.9008 0.90076283 884 P28356 HOXD9 Homeobox protein Hox-D9 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 132.83 114.84 2 6.4321E-06 1 83762 20150910_Q1_SA_NiHu_Masterprac_group13_C 84.249 62.89 10342000 0 0 10342000 0 0 0 2171 884 2144 9636 6378 6378 1 ESQLLPDGERLAPNGR Unmodified 1750.8962 0.89621022 1231 Q6PJG2;F6RU81;H7C1L3 ELMSAN1 ELM2 and SANT domain-containing protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 123.57 113.44 3 0.019967 1 77179 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.941 17.95 2460500 659810 0 0 0 0 1800700 2172 1231 2145 9637;9638 6379 6379 1 ESQVNFQEGQLNSGK Unmodified 1663.7802 0.7801774 936 P49454 CENPF Centromere protein F yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 100.12 92.444 2 3.5959E-09 5 68979 20150910_Q1_SA_NiHu_Masterprac_group13_C 100.43 70.403 11072000 0 1980800 2532600 781270 1702800 4074100 2173 936 2146 9639;9640;9641;9642;9643 6380;6381;6382;6383;6384 6381 5 ESRPPDFISISASK Unmodified 1532.7835 0.78347187 238 C9JA69;Q8WY36-2;Q8WY36 BBX HMG box transcription factor BBX yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 127.13 124.34 3 0.00027681 3 79583 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.031 71.031 10723000 0 2290700 0 0 0 8432800 2174 238 2147 9644;9645 6385;6386;6387 6387 2 ESRQEEMNSQQEEEEMETDAR Unmodified 2584.029 0.02895282 1083 Q13435;E9PPJ0;E9PJ04;H0YCG1 SF3B2 Splicing factor 3B subunit 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 86.926 85.17 3 4.4905E-15 1 58361 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.932 92.932 859010 0 0 0 0 0 859010 2175 1083 2148 9646 6388 6388 1 ESSEPTGSPAPVIQHSSATAPSNGLSVR Unmodified 2762.3471 0.34711456 850 P17544-4;P17544-2;P17544-3;P17544-6;P17544 ATF7 Cyclic AMP-dependent transcription factor ATF-7 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 125.4 115.23 3 0.022521 2 75862 20150910_Q1_SA_NiHu_Masterprac_group10_C 28.039 16.233 2623200 966850 0 0 0 0 1656300 2176 850 2149 9647;9648 6389;6390 6390 2 ESSEVYFLATQYHGRK Unmodified 1913.9272 0.92717599 432 E9PGN6;Q9UI43 FTSJ2 Putative ribosomal RNA methyltransferase 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 129.2 124.24 3 0.036404 1 84041 20150910_Q1_SA_NiHu_Masterprac_group15_B 32.702 15.715 1925600 0 0 0 0 0 1925600 2177 432 2150 9649 6391 6391 1 ESSTVFELK Unmodified 1038.5233 0.523341 179 B8ZZU8;Q15370;B7WPD3;I3L0M9 TCEB2 Transcription elongation factor B polypeptide 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 119.15 110.81 2 0.018678 1 75621 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.552 47.91 19591000 0 3534400 4160100 957520 439150 10500000 2178 179 2151 9650;9651;9652;9653;9654 6392 6392 1 ESTDDESNPLGR Unmodified 1318.5637 0.56370227 1122 Q14CA3;Q14669;Q14CF1 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 62.091 60.937 2 0.028678 1 42653 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.115 13.85 881880 0 0 0 0 0 881880 2179 1122 2152 9655 6393 6393 1 ESTGAQVQVAGDMLPNSTER Unmodified 2088.9746 0.97459647 1135;548 F8VZX2;Q15366-4;Q15366-5;Q15366-3;Q15366;Q15366-2;H3BRU6;G3V0E8;B4DXP5;B4DRD7;F8W0G4;B4DLC0;F8VRG9;F8VXH9;F8VWQ4;P57721-2;P57721-3;P57721-5;E9PFP8;P57721-4;P57721;H9KV40;Q15365 PCBP2;PCBP3;PCBP1 Poly(rC)-binding protein 2;Poly(rC)-binding protein 3;Poly(rC)-binding protein 1 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 1 1 131.06 121.9 2;3 1.3636E-199 7 86307 20150910_Q1_SA_NiHu_Masterprac_group15_B 158.15 127.29 171920000 11836000 101990000 8113000 5079000 1765500 43136000 2180 548;1135 2153 9656;9657;9658;9659;9660;9661;9662;9663 6394;6395;6396;6397;6398;6399;6400 6396 7 ESTGAQVQVAGDMLPNSTER Oxidation (M) 2104.9695 0.96951109 1135;548 F8VZX2;Q15366-4;Q15366-5;Q15366-3;Q15366;Q15366-2;H3BRU6;G3V0E8;B4DXP5;B4DRD7;F8W0G4;B4DLC0;F8VRG9;F8VXH9;F8VWQ4;P57721-2;P57721-3;P57721-5;E9PFP8;P57721-4;P57721;H9KV40;Q15365 PCBP2;PCBP3;PCBP1 Poly(rC)-binding protein 2;Poly(rC)-binding protein 3;Poly(rC)-binding protein 1 no no 0 1 0 By matching By matching By matching By matching By matching By MS/MS 1 1 105.2 102.72 2 0.00054772 1 70110 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.887 46.59 3322100 0 1919000 0 0 0 1403100 2181 548;1135 2153 9664;9665 6401 6401 62 1 ESTNYPGDYTLCVSCDGK Unmodified 2064.8405 0.84047075 912 P41240;H3BU69 CSK Tyrosine-protein kinase CSK yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 130.81 125.85 2 0.0017941 1 85651 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.298 57.545 2425700 0 0 0 0 0 2425700 2182 912 2154 9666 6402 6402 1 ESTSSDCKLPTSEESR Unmodified 1811.7843 0.78433608 701 O15014 ZNF609 Zinc finger protein 609 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 61.367 54.769 3 0.00147 4 38891 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.998 54.648 8742200 0 1831300 1917700 904790 1866400 2222000 2183 701 2155 9667;9668;9669;9670;9671 6403;6404;6405;6406 6404 4 ESWSGETRQDGESK Unmodified 1594.6859 0.68594267 431 Q86SS3;E9PGM9;P78332;C9JSL1;F8WF63;F8WCA5 RBM6 RNA-binding protein 6 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 50.669 43.78 3 0.024471 1 31518 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.594 28.08 2190200 296700 431530 586710 0 318900 556390 2184 431 2156 9672;9673;9674;9675;9676 6407 6407 1 ESYSVYVYK Unmodified 1136.539 0.53899107 119 Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;O60814;Q5QNW6-2;B4DR52;Q99880;P57053 HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST1H2BL;H2BFS Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B;Histone H2B type 1-L;Histone H2B type F-S yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 115.07 105.94 2 0.011026 3 72537 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.783 61.203 51280000 427360 10909000 3156500 4370800 19590000 12826000 2185 119 2157 9677;9678;9679;9680;9681;9682 6408;6409;6410 6409 3 ETAAGGLTLK Unmodified 959.52876 0.52876073 1360 Q92797 SYMPK Symplekin yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 81.058 79.603 2 0.030524 1 54818 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.149 22.976 1133500 0 0 0 0 0 1133500 2186 1360 2158 9683 6411 6411 1 ETEENKELTDTCKER Unmodified 1880.8422 0.84218531 1365 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 0 0 2 By matching By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 1 2 2 49.096 42.888 3;4 0.0024434 4 30556 20150910_Q1_SA_NiHu_Masterprac_group10_B 76.311 62.228 29138000 3774300 4877300 4549100 1830300 6991500 7115800 2187 1365 2159 9684;9685;9686;9687;9688;9689;9690;9691;9692;9693;9694 6412;6413;6414;6415 6414 4 ETEISLKDSTLDN Unmodified 1463.6991 0.69913312 741 O75475 PSIP1 PC4 and SFRS1-interacting protein yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 117.59 108.25 2 1.4079E-08 5 76371 20150910_Q1_SA_NiHu_Masterprac_group15_C 101.39 81.005 58504000 9725500 10409000 8084700 5291700 8855900 16137000 2188 741 2160 9695;9696;9697;9698;9699;9700 6416;6417;6418;6419;6420 6419 5 ETEPCESQLTLTAGEIR Unmodified 1932.9099 0.90987095 1677 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 131.26 115.57 3 0.0032987 1 76890 20150910_Q1_SA_NiHu_Masterprac_group10_C 49.265 6.4848 7925200 7925200 0 0 0 0 0 + 2189 1677 2161 9701 6421 6421 1 ETGLSYTEDDK Unmodified 1256.5408 0.54084156 1080 Q13415 ORC1 Origin recognition complex subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 73.193 65.849 2 0.00029965 5 46207 20150910_Q1_SA_NiHu_Masterprac_group10_B 98.182 59.308 7119700 681980 1125500 1672000 446850 898960 2294400 2190 1080 2162 9702;9703;9704;9705;9706;9707 6422;6423;6424;6425;6426 6425 5 ETGLSYTEDDKK Unmodified 1384.6358 0.63580458 1080 Q13415 ORC1 Origin recognition complex subunit 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 59.85 51.929 2 0.0032456 1 37202 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.766 93.766 1876800 0 324700 419550 0 243520 888990 2191 1080 2163 9708;9709;9710;9711 6427 6427 1 ETGYVVERPSTTKDK Unmodified 1708.8632 0.86317875 1563;452 Q9NYF8-2;Q9NYF8;E9PK09;E9PQN2;E9PKI6;Q9NYF8-3;E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 61.606 54.162 3 0.026719 1 38154 20150910_Q1_SA_NiHu_Masterprac_group13_B 48.277 30.491 5590800 0 0 246460 1086400 1851900 2406000 2192 1563;452 2164 9712;9713;9714;9715 6428 6428 1 ETIELSPTGRPK Unmodified 1326.7143 0.71432967 1540 Q9NRZ9-6;Q9NRZ9-5;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9 HELLS Lymphoid-specific helicase yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 88.734 81.274 2 0.0024547 2 55782 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.781 38.438 7024600 0 1960600 1216900 425150 924700 2497300 2193 1540 2165 9716;9717;9718;9719;9720 6429;6430 6430 2 ETIVEVGSDLPDSGK Unmodified 1544.757 0.75698235 479 Q9BYW2;F2Z317;H7C3H4;H7BZ93;Q9BYW2-3;Q9BYW2-2;F5H340;C9JG86;H7BXT4 SETD2 Histone-lysine N-methyltransferase SETD2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.51 126.54 2 0.025064 1 86399 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.595 17.92 1906500 0 0 0 0 0 1906500 2194 479 2166 9721 6431 6431 0 ETLGSEAVSSNVIDYGHASK Unmodified 2062.9807 0.98072771 1118 Q14966-3;Q14966;Q14966-4;Q14966-2;C9JBI6;F5H330 ZNF638 Zinc finger protein 638 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 127.7 125.84 3 8.2379E-66 3 84972 20150910_Q1_SA_NiHu_Masterprac_group15_B 121.51 106.92 27362000 0 3358400 0 3831700 0 20172000 2195 1118 2167 9722;9723;9724 6432;6433;6434 6433 3 ETMQILPFQPKLFDLK Unmodified 1947.054 0.053956411 1676 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 2 1 1 76.87 70.737 4 0.0042188 2 56337 20150910_Q1_SA_NiHu_Masterprac_group13_C 52.009 52.009 61143000 0 6691000 8379100 22033000 18425000 5613800 + 2196 1676 2168 9725;9726;9727;9728;9729;9730 6435;6436 6436 2 ETPHSPGVEDAPIAK Unmodified 1546.7627 0.76273643 107 F8VQE1;Q9UHB6-2;B4DN52;Q9UHB6;Q9UHB6-4;F8VS07;Q9UHB6-3 LIMA1 LIM domain and actin-binding protein 1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 86.501 78.873 3 0.0069264 2 54205 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.608 48.608 7970100 740850 1374100 1197600 798760 1441000 2417800 2197 107 2169 9731;9732;9733;9734;9735;9736 6437;6438 6438 2 ETPYSEEDFQHLQK Unmodified 1749.7846 0.78459408 1476 Q9H081;I3L4K6 MIS12 Protein MIS12 homolog yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 117.54 105.36 3 0.0043056 1 74762 20150910_Q1_SA_NiHu_Masterprac_group15_C 56.414 43.699 1797800 0 548220 394910 0 854630 0 2198 1476 2170 9737;9738;9739 6439 6439 1 ETRMDLQIGTEK Unmodified 1419.7028 0.70277871 1118 Q14966-3;Q14966;Q14966-5;F5H6M8;E7EUZ3 ZNF638 Zinc finger protein 638 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 104.05 94.028 3 0.0014092 1 63053 20150910_Q1_SA_NiHu_Masterprac_group10_B 91.313 58.225 4487500 1850900 1140200 1496400 0 0 0 2199 1118 2171 9740;9741;9742 6440 6440 1 ETSMTEPSEPGSK Unmodified 1378.5922 0.5922252 1601 Q9UKJ3;Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 68.241 53.903 2 0.00037117 2 38450 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.169 65.531 353690 0 0 0 0 353690 0 2200 1601 2172 9743;9744 6441;6442 6441 2 ETTRYNHPKPNLLYQK Unmodified 2001.0432 0.043208804 1191 Q5T3I0;Q5T3I0-3;E9PAV9;E9PPY4;F2Z3C6;Q5T3I0-2 GPATCH4 G patch domain-containing protein 4 yes no 0 0 2 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 84.497 75.561 4 0.0009801 4 52331 20150910_Q1_SA_NiHu_Masterprac_group10_B 74.649 36.508 16310000 0 3321900 3934000 2972000 6081600 0 2201 1191 2173 9745;9746;9747;9748 6443;6444;6445;6446 6446 4 ETTSSSISRHYGLSDSRK Unmodified 2009.9766 0.97664538 62 B1AKT6;Q9Y483;Q9Y483-2;Q9Y483-3 MTF2 Metal-response element-binding transcription factor 2 yes no 0 0 2 By MS/MS By matching By matching By matching By MS/MS By matching 2 1 1 1 1 1 66.922 59.661 4 0.011745 2 47735 20150910_Q1_SA_NiHu_Masterprac_group15_C 40.693 21.431 19601000 2845400 1503500 5677600 3463200 3974100 2137600 2202 62 2174 9749;9750;9751;9752;9753;9754;9755 6447;6448 6447 2 ETTTGYYKDIVENICGREK Unmodified 2275.0791 0.079061542 913 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 132.89 132.89 3 0.022464 1 85947 20150910_Q1_SA_NiHu_Masterprac_group13_B 43.752 36.48 8541600 0 0 0 8541600 0 0 2203 913 2175 9756 6449 6449 1 ETVIKQTMER Unmodified 1233.6387 0.63872189 615 Q96EY4;H0Y9X1;D6RA57 TMA16 Translation machinery-associated protein 16 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 2 2 1 69.717 59.233 2;3 0.018925 3 41913 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.82 23.826 5380000 460190 681200 1963100 0 902470 1373000 2204 615 2176 9757;9758;9759;9760;9761;9762;9763 6450;6451;6452 6452 3 ETYGDMADCCEK Unmodified 1477.516 0.51596549 294 CON__P02769 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 74.963 67.519 2 0.00046629 4 48983 20150910_Q1_SA_NiHu_Masterprac_group10_C 94.402 89.989 19808000 2370900 2472200 1473100 1188100 3814100 8489900 + 2205 294 2177 9764;9765;9766;9767;9768;9769 6453;6454;6455;6456 6456 4 EVAAQVKAPLVLKD Unmodified 1479.8661 0.86607929 1425 Q99497 PARK7 Protein DJ-1 yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 2 126.76 124.53 2;3 0.0036664 4 84297 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.753 51.821 54792000 0 7321900 0 554860 0 46915000 2206 1425 2178 9770;9771;9772;9773;9774 6457;6458;6459;6460 6457 4 EVADSYAQNAK Unmodified 1194.5517 0.55168102 37 A8MPX7;F5GWL7;Q9H5V9 CXorf56 UPF0428 protein CXorf56 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 53.246 45.976 2 0.0018545 3 33286 20150910_Q1_SA_NiHu_Masterprac_group10_B 90.05 52.706 4658700 0 1185200 1734900 0 488310 1250300 2207 37 2179 9775;9776;9777;9778 6461;6462;6463 6463 3 EVAEKQEATRQDHAQQLATAAEER Unmodified 2708.3114 0.31139775 1121 Q14980-2;Q14980;F5H4J1;F5H6Y5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 76.769 74.737 4 3.5272E-07 2 51671 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.735 52.708 2639900 0 1387900 0 0 0 1251900 2208 1121 2180 9779;9780 6464;6465 6465 2 EVASNSELVQSSR Unmodified 1404.6845 0.68448611 297 P08779;CON__P08779 KRT16 Keratin, type I cytoskeletal 16 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 66.056 63.973 2 0.018793 2 44633 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.298 28.565 710920 0 330980 0 0 0 379940 + 2209 297 2181 9781;9782 6466;6467 6466 1 EVATAIRGAIILAK Unmodified 1424.8715 0.87149902 839 P15880;H0YEN5;E9PMM9;I3L404;E9PM36;E9PPT0 RPS2 40S ribosomal protein S2 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 132.98 126.08 2;3 3.4015E-146 5 85955 20150910_Q1_SA_NiHu_Masterprac_group13_B 157.5 121.82 143120000 0 34723000 11938000 54589000 15622000 26246000 2210 839 2182 9783;9784;9785;9786;9787;9788 6468;6469;6470;6471;6472 6469 5 EVATNSELVQSGK Unmodified 1360.6834 0.68342347 286;304;485 P02533;CON__P02533;Q04695;CON__Q04695;H9KV34;A8MW45;CON__Q9QWL7;F5GWP8 KRT14;KRT17;JUP Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 70.811 65.063 2 0.0022316 2 45480 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.373 40.167 1952800 0 0 790790 475680 0 686320 + 2211 286;304;485 2183 9789;9790;9791 6473;6474 6474 2 EVDATSPAPSTSSTVK Unmodified 1575.7628 0.76279601 1155 Q16666-3;Q16666-2;Q16666;H3BLV7;E7EPR3;H3BM18 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 71.277 64.923 2 0.0014419 5 44885 20150910_Q1_SA_NiHu_Masterprac_group13_B 75.998 60.837 6801700 1980800 0 788630 1315400 0 2716900 2212 1155 2184 9792;9793;9794;9795 6475;6476;6477;6478;6479 6476 5 EVDATSPAPSTSSTVKTEGAEATPGAQK Unmodified 2716.3039 0.30391234 1155 Q16666-3;Q16666-2;Q16666;H3BM18 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 99.878 83.435 3 0.00022549 1 62023 20150910_Q1_SA_NiHu_Masterprac_group15_C 43.696 35.187 806470 0 0 0 0 806470 0 2213 1155 2185 9796 6480 6480 1 EVDEQMLNVQNK Unmodified 1445.682 0.68204326 1007;542 P68371;E7EWR1;Q5ST81;F5H8C9;Q9BVA1;Q13885;F5H894;F8VUJ7;Q5JP53;F8VYX6;F8VW92;P07437;E9PBJ4 TUBB4B;TUBB;TUBB2B;TUBB2A Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta chain no no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 109.36 98.263 2 4.3174E-141 4 70627 20150910_Q1_SA_NiHu_Masterprac_group15_C 165.63 125.75 21778000 819380 0 0 0 3198500 17761000 2214 1007;542 2186 9797;9798;9799;9800 6481;6482;6483;6484 6483 4 EVDEQMLNVQNK Oxidation (M) 1461.677 0.67695789 1007;542 P68371;E7EWR1;Q5ST81;F5H8C9;Q9BVA1;Q13885;F5H894;F8VUJ7;Q5JP53;F8VYX6;F8VW92;P07437;E9PBJ4 TUBB4B;TUBB;TUBB2B;TUBB2A Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta chain no no 0 1 0 By matching By matching By matching By matching By matching By MS/MS 1 71.352 70.097 2 0.0067707 2 48673 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.674 36.448 606740 0 0 0 0 0 606740 2215 1007;542 2186 9801 6485;6486 6486 60 2 EVDGLLR Unmodified 800.43922 0.43921744 1287 Q8IXB1;Q8IXB1-2;F8W884;Q3B7W8;E7EP04 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 91.134 87.724 2 0.019919 3 59530 20150910_Q1_SA_NiHu_Masterprac_group10_B 105.39 30.08 8798800 868730 3033100 0 600950 0 4296000 2216 1287 2187 9802;9803;9804;9805;9806 6487;6488;6489 6488 3 EVDYDSDMPRK Unmodified 1353.5871 0.58708025 613 H0Y7A5;Q9BX10-2;Q9BX10-4;Q9BX10 GTPBP2 GTP-binding protein 2 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 73.891 66.631 3 0.0056992 5 51909 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.694 46.473 5443700 0 717830 897660 605960 1875500 1346800 2217 613 2188 9807;9808;9809;9810;9811 6490;6491;6492;6493;6494 6492 5 EVDYSDSLTEK Unmodified 1284.5721 0.57214169 952 P51532-5;P51532-2;P51532-3;P51532-4;P51532;Q9HBD4;F5H0X5;H0YGM3 SMARCA4 Transcription activator BRG1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 96.442 84.644 2 0.0036199 1 58005 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.525 81.525 4898800 0 0 415080 0 1168000 3315700 2218 952 2189 9812;9813;9814 6495 6495 1 EVEAQLPEK Unmodified 1041.5342 0.53424004 952 P51532-5;P51532-2;P51532-3;P51532-4;P51532;Q9HBD4;F5H0X5 SMARCA4 Transcription activator BRG1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 78.04 70.68 2 0.021779 1 49058 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.847 36.116 5717700 0 591700 786410 361280 1506000 2472300 2219 952 2190 9815;9816;9817;9818;9819 6496 6496 1 EVEIQSHLRHPNILR Unmodified 1840.0068 0.006763718 698 O14965;A3KFJ0;Q5QPD4 AURKA Aurora kinase A yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 117.97 105.03 4 0.0027835 1 71832 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.662 47.672 11126000 0 0 1480300 0 1313300 8332200 2220 698 2191 9820;9821;9822 6497 6497 1 EVELVSE Unmodified 803.39126 0.3912642 733 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 98.167 91.767 1 7.0611E-05 1 67031 20150910_Q1_SA_NiHu_Masterprac_group15_C 117.56 117.56 3241600 0 0 0 394310 1776000 1071300 2221 733 2192 9823;9824;9825 6498 6498 1 EVEQSRQEVVR Unmodified 1357.695 0.69499121 1263 Q86UT8;E9PJ16 CCDC84 Coiled-coil domain-containing protein 84 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 41.093 37.101 3 1.4541E-05 2 26086 20150910_Q1_SA_NiHu_Masterprac_group10_B 105.2 51.958 4723600 538580 1370100 0 294250 622520 1898200 2222 1263 2193 9826;9827;9828;9829;9830 6499;6500 6499 2 EVESQLPEK Unmodified 1057.5292 0.52915466 951 P51531-2;P51531 SMARCA2 Probable global transcription activator SNF2L2 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 66.626 56.466 2 0.016649 3 45919 20150910_Q1_SA_NiHu_Masterprac_group13_C 72.848 41.09 2554700 0 0 456380 0 552730 1545600 2223 951 2194 9831;9832;9833 6501;6502;6503 6501 3 EVEVIGGADK Unmodified 1015.5186 0.51858998 787 P04183 TK1 Thymidine kinase, cytosolic yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 81.594 65.578 2 0.002822 1 52670 20150910_Q1_SA_NiHu_Masterprac_group13_C 96.342 9.0193 4034200 0 0 2498300 0 1535800 0 2224 787 2195 9834;9835 6504 6504 1 EVEVIGGADKYHSVCR Unmodified 1817.873 0.87303193 787 P04183 TK1 Thymidine kinase, cytosolic yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 2 95.164 88.291 3;4 9.1183E-38 9 66662 20150910_Q1_SA_NiHu_Masterprac_group13_C 117.08 99.452 94701000 6056200 18187000 23103000 6959300 8257800 32139000 2225 787 2196 9836;9837;9838;9839;9840;9841;9842;9843;9844;9845 6505;6506;6507;6508;6509;6510;6511;6512;6513 6506 9 EVEVIGGADKYHSVCRLCYFK Unmodified 2529.2144 0.21444959 787 P04183 TK1 Thymidine kinase, cytosolic yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching 2 131.32 131.32 3;4 2.5975E-09 2 84297 20150910_Q1_SA_NiHu_Masterprac_group13_B 84.653 54.811 34983000 0 0 0 34983000 0 0 2226 787 2197 9846;9847 6514;6515 6514 2 EVFEDAAEIR Unmodified 1177.5615 0.56151742 397 E7EX81;P19338;H7BY16 NCL Nucleolin yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 121.92 113.57 2 0.003334 2 75088 20150910_Q1_SA_NiHu_Masterprac_group10_C 89.171 61.868 2159300 1122800 1036600 0 0 0 0 2227 397 2198 9848;9849 6516;6517 6517 2 EVGSIIGK Unmodified 801.45962 0.45961853 1135;548 F8VZX2;Q15366-4;Q15366-5;Q15366-3;Q15366;Q15366-2;H3BRU6;G3V0E8;B4DXP5;F8W0G4;B4DLC0;F8VRG9;F8W1G6;P57721-2;P57721-3;P57721-5;E9PFP8;P57721-4;P57721;F8VTZ0;H3BSP4;C9K0A2;F8WC71;C9IZV9;C9J7A9;C9JSA6;C9J5V4;C9JTY5;C9JZY3;C9J0A4;P57723-2;E7EST1;P57723;Q15365 PCBP2;PCBP3;PCBP4;PCBP1 Poly(rC)-binding protein 2;Poly(rC)-binding protein 3;Poly(rC)-binding protein 4;Poly(rC)-binding protein 1 no no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 1 2 1 2 1 80.672 71.119 1;2 0.020209 4 48475 20150910_Q1_SA_NiHu_Masterprac_group10_C 79.713 11.228 217070000 16095000 40322000 37342000 10815000 32501000 79993000 2228 548;1135 2199 9850;9851;9852;9853;9854;9855;9856;9857;9858 6518;6519;6520;6521 6520 4 EVIAKELSK Unmodified 1015.5914 0.59136099 778 O96006 ZBED1 Zinc finger BED domain-containing protein 1 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 64.041 57.31 2 0.015711 2 40750 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.667 38.555 7237900 600580 1249400 3701200 0 0 1686700 2229 778 2200 9859;9860;9861;9862 6522;6523 6523 2 EVIDKYTAVVK Unmodified 1263.7075 0.70745338 136 B4DX32;O60870;F5GXB3 KIN DNA/RNA-binding protein KIN17 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 106.51 99.202 3 0.011762 3 65793 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.073 33.147 2739200 0 550080 0 0 542440 1646700 2230 136 2201 9863;9864;9865 6524;6525;6526 6525 3 EVINHHPDVQTK Unmodified 1415.7157 0.71572665 1210 Q5VYS8-6;Q5VYS8;Q5VYS8-4 ZCCHC6 Terminal uridylyltransferase 7 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 48.573 41.637 3 0.0036108 1 35054 20150910_Q1_SA_NiHu_Masterprac_group15_C 65.179 40.305 1292500 358030 558570 0 0 375910 0 2231 1210 2202 9866;9867;9868 6527 6527 1 EVINRPFTNESLQPHALGPVK Unmodified 2345.2492 0.24917883 1115 Q14807;B7Z265;H3BRB3 KIF22 Kinesin-like protein KIF22 yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 131.55 124.63 3;4 2.5687E-133 4 86564 20150910_Q1_SA_NiHu_Masterprac_group15_B 137.69 93.095 158280000 0 0 0 3275000 5639100 149370000 2232 1115 2203 9869;9870;9871;9872 6528;6529;6530;6531 6530 4 EVITAQDTVIKAK Unmodified 1414.8031 0.80314468 770 O95347-2;O95347 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 103.25 91.115 2 0.0057852 1 62230 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.352 14.038 1356000 0 0 232760 0 352580 770640 2233 770 2204 9873;9874;9875 6532 6532 1 EVKEELSAVER Unmodified 1287.667 0.66704513 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 82.639 76.774 3 0.026147 1 53050 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.79 25.45 7027300 351210 1208100 1163200 765490 0 3539300 2234 919;920 2205 9876;9877;9878;9879;9880 6533 6533 1 EVLEDFAEDGEK Unmodified 1379.6093 0.60925548 336 O60313;E5KLK1;E5KLJ6;E5KLJ9;O60313-2;E5KLJ5;H7C141;H7C3G2 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 125.68 117.46 2 3.0634E-05 3 77555 20150910_Q1_SA_NiHu_Masterprac_group10_B 100.38 81.114 21474000 0 2914900 8914000 2111500 2294300 5238800 2235 336 2206 9881;9882;9883;9884;9885 6534;6535;6536 6536 3 EVLEEISCYPENNDAK Unmodified 1908.8411 0.84112268 562 Q5JS72;O14936-5;Q5JS74;O14936-3;O14936-4;O14936-6;F8W998;O14936-2;H9KV37;O14936 CASK Peripheral plasma membrane protein CASK yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 130.54 129.94 2 0.0029454 1 83409 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.011 38.014 2218600 0 2218600 0 0 0 0 2236 562 2207 9886 6537 6537 1 EVLEHPWITANSSKPSNCQNK Unmodified 2438.1649 0.16485686 698 O14965 AURKA Aurora kinase A yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 109.76 100.96 3 0.0029764 1 68924 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.732 33.828 8987200 550200 803210 0 0 299850 7334000 2237 698 2208 9887;9888;9889;9890 6538 6538 1 EVLLLMQALNTLSTPEEK Unmodified 2028.0813 0.081293374 1546 Q9NUQ3;Q9BZA5;H7C3Y3 TXLNG;TXLNG2P Gamma-taxilin;Putative gamma-taxilin 2 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 134.2 134.2 2 4.1098E-29 1 87422 20150910_Q1_SA_NiHu_Masterprac_group13_B 107.41 84.562 0 0 0 0 0 0 0 2238 1546 2209 9891 6539 6539 1 EVLVVNSQGEISR Unmodified 1428.7573 0.75725712 1061 Q12830-4;Q12830-2;Q12830;F5GXF5;F5H176 BPTF Nucleosome-remodeling factor subunit BPTF yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 114.38 106.95 2 0.0030946 2 70569 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.104 36.137 3483600 0 918440 0 0 539280 2025800 2239 1061 2210 9892;9893;9894 6540;6541 6541 2 EVLVVNSQGEISRLSTK Unmodified 1858.016 0.015991 1061 Q12830-4;Q12830-2;Q12830;F5GXF5;F5H176 BPTF Nucleosome-remodeling factor subunit BPTF yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 2 1 130.84 130.54 2;3 1.6013E-131 2 83591 20150910_Q1_SA_NiHu_Masterprac_group10_B 145.94 122.86 148710000 0 117750000 0 30959000 0 0 2240 1061 2211 9895;9896;9897 6542;6543 6542 2 EVMLQNGETPK Unmodified 1244.6071 0.60708741 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 80.697 73.744 2 0.00066204 4 57713 20150910_Q1_SA_NiHu_Masterprac_group13_C 94.767 69.471 5152900 0 1074900 948400 0 0 3129600 2241 486 2212 9898;9899;9900 6544;6545;6546;6547 6544 4 EVNEGIQALSNSEEEK Unmodified 1774.8221 0.8221018 1298 Q8N3X1;Q8N3X1-2 FNBP4 Formin-binding protein 4 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 111.61 104.14 2 0.0061163 3 68978 20150910_Q1_SA_NiHu_Masterprac_group10_B 47.855 30.601 5473300 1431100 1149000 1388600 1247400 0 257180 2242 1298 2213 9901;9902;9903;9904;9905 6548;6549;6550 6549 3 EVNEQTHFASMPR Unmodified 1544.7042 0.70417569 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 94.845 86.966 3 0.0015824 3 59469 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.082 43.867 13547000 1677000 1469800 1122000 699690 2909000 5669500 2243 578 2214 9906;9907;9908;9909;9910;9911 6551;6552;6553 6551 3 EVNSQEEEEEELLRK Unmodified 1859.8749 0.87486565 535 Q96RL1;F8VQY2;Q96RL1-3;F2Z2T8;Q96RL1-2;D6RC40;D6RCQ3;D6RCF3;Q96RL1-5 UIMC1 BRCA1-A complex subunit RAP80 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 1 1 1 1 1 110.61 101.16 3 1.1337E-05 3 68103 20150910_Q1_SA_NiHu_Masterprac_group10_C 89.26 70.679 40095000 3821100 12988000 5453000 1123400 262390 16447000 2244 535 2215 9912;9913;9914;9915;9916;9917;9918 6554;6555;6556 6556 3 EVPEYLNHVSK Unmodified 1313.6616 0.66156582 1089 Q13619;Q13619-2 CUL4A Cullin-4A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 90.938 88.882 3 0.0068726 1 60914 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.385 29.689 965330 0 0 0 0 0 965330 2245 1089 2216 9919 6557 6557 1 EVPMCSDPEPR Unmodified 1315.5537 0.55367163 474 F2Z2E1;Q96EK7;F5GZX9;F5GY05;Q96EK7-2 FAM120B Constitutive coactivator of peroxisome proliferator-activated receptor gamma yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 75.293 74.038 2 0.030492 1 51302 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.286 40.63 750650 0 0 0 0 0 750650 2246 474 2217 9920 6558 6558 1 EVQTNDLKEVVNK Unmodified 1514.794 0.79403655 321 D6RAT0;P61247;D6RG13;D6R9B6;D6RB09;H0Y9Y4;F5H4F9;E9PFI5 RPS3A 40S ribosomal protein S3a yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 2 1 1 2 2 95.832 88.036 2;3 7.9807E-60 5 64931 20150910_Q1_SA_NiHu_Masterprac_group15_C 132.86 98.679 22867000 4403100 2065300 699680 777430 11196000 3725100 2247 321 2218 9921;9922;9923;9924;9925;9926;9927;9928;9929;9930 6559;6560;6561;6562;6563 6561 5 EVQTVCAGLTR Unmodified 1232.6183 0.6183208 1209 Q5VWQ0;H0YDA9;Q5VWQ0-4 RSBN1 Round spermatid basic protein 1 yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 91.788 82.489 2 0.0036025 3 56517 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.625 29.646 5252500 0 840750 534910 0 1097700 2779100 2248 1209 2219 9931;9932;9933;9934 6564;6565;6566 6565 3 EVSDFIQDSGQIKK Unmodified 1592.8046 0.80460124 678 I3L0Q5;I3L0X5;I3L4C3;O75391 SPAG7 Sperm-associated antigen 7 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 117.04 107.83 3 0.001653 4 73799 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.345 18.865 7603000 1000800 2053100 1340500 919130 521410 1768100 2249 678 2220 9935;9936;9937;9938;9939;9940 6567;6568;6569;6570 6568 4 EVSPGSRDILDGVR Unmodified 1498.774 0.77396981 535 Q96RL1;F8VQY2;Q96RL1-3;F2Z2T8;Q96RL1-2;D6RCF3;Q96RL1-4;H7BXP9 UIMC1 BRCA1-A complex subunit RAP80 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 109.69 107.5 3 0.02726 2 73592 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.469 24.079 3112300 0 1412200 0 0 0 1700100 2250 535 2221 9941;9942;9943 6571;6572 6571 2 EVSTAPAGTDMPAAK Unmodified 1444.6868 0.68679429 745 O75530-3;O75530;O75530-2;F5GY72;E9PJK2;H0YEL4 EED Polycomb protein EED yes no 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 83.791 76.391 2 0.0034282 2 59558 20150910_Q1_SA_NiHu_Masterprac_group13_C 56.793 24.634 8454100 0 1293500 1035800 1032900 2800500 2291400 2251 745 2222 9944;9945;9946;9947;9948 6573;6574 6574 2 EVSTNTAMIQTSK Unmodified 1408.6868 0.68679429 834 P13646;CON__P13646-1;P13646-2;C9JA77;P13646-3;CON__ENSEMBL:ENSP00000377550 KRT13 Keratin, type I cytoskeletal 13 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 86.438 77.365 2 5.3701E-09 2 53395 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.45 77.624 2448300 0 0 836150 0 0 1612100 + 2252 834 2223 9949;9950 6575;6576 6575 2 EVSTYIKK Unmodified 966.5386 0.53859714 1006 Q5VTE0;P68104;Q6IQ15;F8W6I0 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 54.181 45.483 2 0.039261 1 32887 20150910_Q1_SA_NiHu_Masterprac_group10_B 98.458 44.683 8515200 530050 3493700 4057600 0 433750 0 2253 1006 2224 9951;9952;9953;9954 6577 6577 1 EVVCTTQNTPTVK Unmodified 1475.729 0.72899346 965 P54132;H0YNU5;H0YLV8 BLM Bloom syndrome protein yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 78.121 71.092 2 0.0017395 3 54756 20150910_Q1_SA_NiHu_Masterprac_group15_C 73.927 46.246 6266500 0 0 904240 450800 900120 4011400 2254 965 2225 9955;9956;9957;9958;9959 6578;6579;6580 6580 3 EWDEFLAKGK Unmodified 1221.603 0.60298831 258 Q13111-2;C9JLF8;Q13111-3;Q13111 CHAF1A Chromatin assembly factor 1 subunit A yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.56 125.6 3 0.024951 1 85350 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.908 17.569 3470200 0 0 0 0 0 3470200 2255 258 2226 9960 6581 6581 1 EWGKAICYPPEDYTVLMR Unmodified 2227.0442 0.044196361 1679 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 2 2 131.48 129.37 3;4 0.0018943 3 86603 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.281 13.313 139100000 0 46292000 0 52190000 0 40616000 + 2256 1679 2227 9961;9962;9963;9964;9965 6582;6583;6584 6583 2 EWMPVTK Unmodified 889.43677 0.4367746 839 P15880;E9PQD7;E9PMM9;E9PPT0 RPS2 40S ribosomal protein S2 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 2 1 1 1 1 2 104.24 96.142 2 0.0060524 2 65762 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.352 47.609 86528000 18264000 7359500 3858800 13979000 22316000 20750000 2257 839 2228 9966;9967;9968;9969;9970;9971;9972;9973 6585;6586 6586 2 EWSQHINGASHSRR Unmodified 1663.7927 0.7927482 52 P43243;A8MXP9;D6REM6;D6R991;H0Y8T4;P43243-2;D6RIA2 MATR3 Matrin-3 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 45.241 39.325 3 0.0028068 2 27348 20150910_Q1_SA_NiHu_Masterprac_group13_B 55.98 41.896 3744100 0 0 966540 460800 848410 1468300 2258 52 2229 9974;9975;9976;9977 6587;6588 6587 2 EYEAAVEQLK Unmodified 1178.5819 0.58191851 576 G3V1I6;H0Y2W2;Q9NVI7-2;Q9NVI7 ATAD3A ATPase family AAA domain-containing protein 3A no no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 101.19 95.741 2 0.0022251 4 65478 20150910_Q1_SA_NiHu_Masterprac_group15_B 102.06 45.429 5188900 0 1319500 0 830940 1432100 1606400 2259 576 2230 9978;9979;9980;9981 6589;6590;6591;6592 6590 4 EYEATLEECCAK Unmodified 1501.6065 0.60649506 294 CON__P02769 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 89.239 82.299 2 1.3397E-117 14 55693 20150910_Q1_SA_NiHu_Masterprac_group13_B 155.99 132.17 279360000 32994000 65569000 33195000 26091000 50554000 70959000 + 2260 294 2231 9982;9983;9984;9985;9986;9987;9988 6593;6594;6595;6596;6597;6598;6599;6600;6601;6602;6603;6604;6605;6606 6593 14 EYGFCIMDNHKER Unmodified 1697.729 0.72901023 825 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 2 2 113.63 105.07 3;4 0.0095642 2 71858 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.414 51.532 6267300 0 421070 0 0 3895500 1950700 2261 825 2232 9989;9990;9991;9992;9993 6607;6608 6607 2 EYIKQNPMATEK Unmodified 1450.7126 0.71261511 1159 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 2 75.636 69.585 2;3 0.00049799 2 48292 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.334 63.718 3204200 0 0 0 0 278260 2926000 2262 1159 2233 9994;9995;9996 6609;6610 6609 2 EYNVNDDSMK Unmodified 1213.4921 0.49211723 1107 Q14527;Q14527-2;E7ESN4;F5H3D6 HLTF Helicase-like transcription factor yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 2 67.86 61.5 2 0.0028315 4 49376 20150910_Q1_SA_NiHu_Masterprac_group13_C 96.113 84.659 20979000 834790 3689300 8469900 819620 1250100 5914900 2263 1107 2234 9997;9998;9999;10000;10001;10002;10003 6611;6612;6613;6614 6612 4 EYNVNDDSMKLGGNNTSEK Unmodified 2113.9222 0.92222655 1107 Q14527;Q14527-2;E7ESN4;F5H3D6 HLTF Helicase-like transcription factor yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 100.82 89.471 3 4.9161E-66 1 67415 20150910_Q1_SA_NiHu_Masterprac_group13_C 124.45 124.45 6970500 0 0 4682200 1615800 672500 0 2264 1107 2235 10004;10005;10006 6615 6615 1 EYQEPEVPESNQK Unmodified 1575.7053 0.70528113 891 P33981-2;P33981 TTK Dual specificity protein kinase TTK yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1 85.568 76.752 2 3.7934E-09 4 59595 20150910_Q1_SA_NiHu_Masterprac_group13_C 103.11 69.917 29956000 2606700 4494200 6802500 3355000 4763200 7934400 2265 891 2236 10007;10008;10009;10010;10011;10012;10013 6616;6617;6618;6619 6617 4 EYQEYLKRPPESPPIVEEWNSR Unmodified 2745.3398 0.33984433 1448 Q9BTL3 FAM103A1 RNMT-activating mini protein yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 133.22 128.26 4 0.029788 1 88295 20150910_Q1_SA_NiHu_Masterprac_group15_B 36.687 16.656 14582000 0 0 0 0 0 14582000 2266 1448 2237 10014 6620 6620 0 EYQMELK Unmodified 939.43717 0.43716853 1362 Q92878-2;Q92878;Q92878-3;E7EN38;E7ESD9 RAD50 DNA repair protein RAD50 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 92.908 83.583 2 0.0074562 1 61967 20150910_Q1_SA_NiHu_Masterprac_group15_C 94.262 61.652 4807600 0 741020 526070 0 1298200 2242300 2267 1362 2238 10015;10016;10017;10018 6621 6621 1 EYSGFAGVSRPR Unmodified 1324.6524 0.65239812 1563;452 Q9NYF8-2;Q9NYF8;Q9NYF8-4;H0YF14;Q9NYF8-3;E9PK91;H0YF63 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1 94.11 85.024 3 0.00017871 7 64715 20150910_Q1_SA_NiHu_Masterprac_group13_C 96.756 68.842 24501000 4720500 1561300 3967100 2536700 3999300 7716200 2268 1563;452 2239 10019;10020;10021;10022;10023;10024;10025;10026 6622;6623;6624;6625;6626;6627;6628 6623 7 EYSIGTGSTKQEAK Unmodified 1497.7311 0.73110195 412 Q05CP4;E9PC80;P19525 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 58.018 51.542 2;3 7.3535E-08 9 37177 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.337 66.99 15645000 1605200 1877300 3903200 2252000 2515200 3492100 2269 412 2240 10027;10028;10029;10030;10031;10032;10033;10034;10035;10036;10037;10038 6629;6630;6631;6632;6633;6634;6635;6636;6637 6632 9 EYSSELNAPSQESDSHPR Unmodified 2031.877 0.87699092 942 P49756;P49756-2;P49756-3;E9PQU5 RBM25 RNA-binding protein 25 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 82.498 72.697 3 0.0065794 1 50535 20150910_Q1_SA_NiHu_Masterprac_group10_B 43.955 43.955 952250 0 601430 350820 0 0 0 2270 942 2241 10039;10040 6638 6638 1 EYVAAQLR Unmodified 948.50288 0.50288033 1097 Q14151;A8MXT5;B4DU53 SAFB2 Scaffold attachment factor B2 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 85.6 78.22 2 0.014854 3 54000 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.181 26.382 14289000 0 2410000 2478100 694220 3773500 4933600 2271 1097 2242 10041;10042;10043;10044;10045 6639;6640;6641 6639 3 EYVAAQLRQLPAQPPEHAVDGEGFK Unmodified 2749.3824 0.38237785 1097 Q14151;B4DU53 SAFB2 Scaffold attachment factor B2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 2 131.91 131.31 3;4 2.1177E-08 2 84734 20150910_Q1_SA_NiHu_Masterprac_group10_B 60.347 46.714 27420000 0 27420000 0 0 0 0 2272 1097 2243 10046;10047 6642;6643 6643 2 EYVCVKCCAEEDK Unmodified 1688.6844 0.6844278 1353 Q92576-2;Q92576;E7EVH3;E9PE34;B3KP41;E7ER40 PHF3 PHD finger protein 3 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 69.784 65.699 3 0.0059126 1 45894 20150910_Q1_SA_NiHu_Masterprac_group13_B 60.157 54.784 1204700 700760 0 0 503930 0 0 2273 1353 2244 10048;10049 6644 6644 1 EYYTQNMER Unmodified 1232.5132 0.51318702 345 E5RJW4;Q9NW64;E5RHA8;Q9NW64-2;F5GWK3 RBM22 Pre-mRNA-splicing factor RBM22 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 75.546 68.66 2 0.0063088 1 48181 20150910_Q1_SA_NiHu_Masterprac_group10_B 92.538 82.534 4768900 0 1509000 399500 0 0 2860500 2274 345 2245 10050;10051;10052 6645 6645 1 FAALDNEEEDK Unmodified 1279.5568 0.55682598 1321;411 E9PC67;F8VQZ0;Q5STZ8;Q8NE71;Q8NE71-2 ABCF1 ATP-binding cassette sub-family F member 1 no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 89.225 79.801 2 7.1951E-08 3 54702 20150910_Q1_SA_NiHu_Masterprac_group10_B 109.39 109.39 37382000 15282000 12247000 9852400 0 0 0 2275 411;1321 2246 10053;10054;10055 6646;6647;6648 6647 3 FAANPNQNKNVALLSQLYHSPAR Unmodified 2552.3248 0.32480339 1146 Q15717 ELAVL1 ELAV-like protein 1 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 132.95 120.8 4 3.2508E-84 4 83937 20150910_Q1_SA_NiHu_Masterprac_group13_C 119.62 100.27 48388000 0 8413400 35874000 0 4101200 0 2276 1146 2247 10056;10057;10058 6649;6650;6651;6652 6649 4 FAANPNQNKNVALLSQLYHSPARR Unmodified 2708.4259 0.42591442 1146 Q15717 ELAVL1 ELAV-like protein 1 yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 131.94 120.03 5 4.8259E-05 2 80936 20150910_Q1_SA_NiHu_Masterprac_group15_C 59.342 46.73 37938000 0 0 16589000 15073000 6276300 0 2277 1146 2248 10059;10060;10061 6653;6654 6654 2 FAAQNLHQNLIR Unmodified 1423.7684 0.76843093 1478 Q9H0C8;E9PC05 ILKAP Integrin-linked kinase-associated serine/threonine phosphatase 2C yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 118.4 106.5 3 0.0015215 1 73087 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.831 55.149 6442100 806410 0 0 0 2226900 3408800 2278 1478 2249 10062;10063;10064 6655 6655 1 FAAQNLHQNLIRKFPK Unmodified 1924.0795 0.079534731 1478 Q9H0C8;E9PC05 ILKAP Integrin-linked kinase-associated serine/threonine phosphatase 2C yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 120.14 112.62 4 0.0032523 2 80125 20150910_Q1_SA_NiHu_Masterprac_group13_C 65.043 50.469 17718000 0 0 12335000 1648200 0 3734900 2279 1478 2250 10065;10066;10067 6656;6657 6656 2 FAASGGFLHHMAGLSSSK Unmodified 1803.8726 0.872638 1465 Q9BY77;Q9BY77-2;B4DMM2;F8WCX5 POLDIP3 Polymerase delta-interacting protein 3 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 131.69 117.6 3;4 1.963E-20 4 80590 20150910_Q1_SA_NiHu_Masterprac_group15_C 97.073 63.846 91196000 26347000 0 46856000 0 11508000 6484800 2280 1465 2251 10068;10069;10070;10071 6658;6659;6660;6661 6660 2 FACHSASLTVR Unmodified 1247.6081 0.60809046 1133 Q15233;F5GYZ3;C9JYS8;C9IZL7 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 3 1 1 1 1 1 80.648 73.014 3 1.8481E-86 4 50961 20150910_Q1_SA_NiHu_Masterprac_group10_C 150.15 124.91 17781000 3445000 2192500 2161400 2324900 4606800 3050200 2281 1133 2252 10072;10073;10074;10075;10076;10077;10078;10079 6662;6663;6664;6665 6664 4 FACPECPK Unmodified 1007.4205 0.42047261 804 P08047;G5E9M8 SP1 Transcription factor Sp1 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 69.206 61.155 2 1.9016E-16 4 43237 20150910_Q1_SA_NiHu_Masterprac_group10_C 130.22 101.06 13565000 2512100 0 1388600 870330 4360900 4433000 2282 804 2253 10080;10081;10082;10083;10084 6666;6667;6668;6669 6669 4 FAEAECLAESHQHLSK Unmodified 1855.8523 0.85229649 430;663 H7C0J3;H7C3H7;I3L229;Q12873;E9PG89;Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 3 97.258 89.04 3;4 1.5315E-37 11 60088 20150910_Q1_SA_NiHu_Masterprac_group10_B 115.04 91.506 107690000 6321500 24958000 21458000 3465900 9551700 41933000 2283 663;430 2254 10085;10086;10087;10088;10089;10090;10091;10092;10093;10094;10095;10096;10097;10098 6670;6671;6672;6673;6674;6675;6676;6677;6678;6679;6680 6678 11 FAEALGSTEAK Unmodified 1122.5557 0.55570376 90 P78347-2;P78347-4;P78347-3;B4DH52;P78347 GTF2I General transcription factor II-I yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 85.887 77.816 2 2.5958E-09 4 53713 20150910_Q1_SA_NiHu_Masterprac_group15_B 109.72 54.937 5828100 0 0 0 2060200 3767900 0 2284 90 2255 10099;10100;10101;10102 6681;6682;6683;6684 6682 4 FAEEFYSFRR Unmodified 1350.6357 0.63568542 280 C9K0Y1;Q96GN5-4;Q96GN5-2;Q96GN5 CDCA7L Cell division cycle-associated 7-like protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 132.18 127.22 3 0.0048254 1 87154 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.221 43.164 10725000 0 0 0 0 0 10725000 2285 280 2256 10103 6685 6685 1 FAEEQLLK Unmodified 976.52295 0.52294707 1191 Q5T3I0;Q5T3I0-3;E9PAV9;F8W895;E9PPY4;F2Z3C6 GPATCH4 G patch domain-containing protein 4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 119.12 111.24 2 0.023129 1 72818 20150910_Q1_SA_NiHu_Masterprac_group10_B 77.318 26.258 14494000 2435100 3026500 0 4849100 724250 3458700 2286 1191 2257 10104;10105;10106;10107;10108 6686 6686 1 FAEMEER Unmodified 910.38547 0.38546731 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 59.977 57.894 2 0.022126 1 40810 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.754 62.86 13083000 0 2095300 0 0 0 10988000 2287 486 2258 10109;10110 6687 6687 1 FAEVECLAESHQHLSK Unmodified 1883.8836 0.88359662 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 1 2 3 113.77 104.85 2;3;4 2.0496E-37 8 76212 20150910_Q1_SA_NiHu_Masterprac_group13_C 113.43 89.207 95654000 2019300 27194000 24020000 817940 3161900 38441000 2288 486 2259 10111;10112;10113;10114;10115;10116;10117;10118;10119;10120;10121 6688;6689;6690;6691;6692;6693;6694;6695 6689 8 FAEVTQEVEVARPVDK Unmodified 1815.9367 0.93667805 660 Q02241-2;H7BYN4;Q02241;B4E1K0;H0YKQ5 KIF23 Kinesin-like protein KIF23 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 117.91 117.91 3 0.010089 1 76102 20150910_Q1_SA_NiHu_Masterprac_group13_B 45.438 35.964 1887400 0 0 0 1887400 0 0 2289 660 2260 10122 6696 6696 1 FAFDYATK Unmodified 961.45453 0.45453316 723 O43837-3;O43837-2;O43837 IDH3B Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 131.63 115.94 2 0.0036054 1 77239 20150910_Q1_SA_NiHu_Masterprac_group10_C 109.71 92.483 5305800 5305800 0 0 0 0 0 2290 723 2261 10123 6697 6697 1 FAGSAGWEGTESLKKPEDK Unmodified 2035.9851 0.9850848 1071 Q13123 IK Protein Red yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 107.85 99.049 3;4 0.001317 7 71306 20150910_Q1_SA_NiHu_Masterprac_group15_C 66.809 49.557 20013000 2424200 2502900 2903900 1767400 2968200 7446800 2291 1071 2262 10124;10125;10126;10127;10128;10129;10130;10131;10132;10133;10134;10135 6698;6699;6700;6701;6702;6703;6704 6700 7 FAGSSPSQSSMVAR Unmodified 1410.6562 0.65616287 313 H7C2I6;H7C224;P51617-4;P51617-2;P51617-3;D3YTB5;P51617 IRAK1 Interleukin-1 receptor-associated kinase 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 86.812 75.449 2 0.0065412 2 52183 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.09 27.085 2395700 0 0 255990 0 992720 1146900 2292 313 2263 10136;10137;10138 6705;6706 6705 2 FAIGSQVSEHSIIK Unmodified 1514.8093 0.80929269 892 P33992;B1AHB1 MCM5 DNA replication licensing factor MCM5 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 130.82 130.21 3 9.1591E-13 1 83645 20150910_Q1_SA_NiHu_Masterprac_group10_B 102.9 76.921 5163000 0 5163000 0 0 0 0 2293 892 2264 10139 6707 6707 1 FALPQYLK Unmodified 978.55385 0.55385327 289 CON__P02663 yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 135.89 119.12 2 0.0015751 2 82592 20150910_Q1_SA_NiHu_Masterprac_group15_C 111.65 78.133 286630000 22341000 0 0 0 264290000 0 + 2294 289 2265 10140;10141 6708;6709 6708 2 FALVAPVQAEEDSGNVNGK Unmodified 1943.9589 0.95887005 779 O96028-5;O96028-3;O96028;H0Y9L4 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 133.31 132.71 2 2.5534E-06 1 86341 20150910_Q1_SA_NiHu_Masterprac_group10_B 87.24 69.006 17374000 0 17374000 0 0 0 0 2295 779 2266 10142 6710 6710 1 FALVAPVQAEEDSGNVNGKK Unmodified 2072.0538 0.05383307 779 O96028-5;O96028-3;O96028;H0Y9L4 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.47 130.86 3 4.1138E-07 1 84271 20150910_Q1_SA_NiHu_Masterprac_group10_B 87.24 62.054 17942000 0 17942000 0 0 0 0 2296 779 2267 10143 6711 6711 1 FAQASTLTYHVR Unmodified 1392.715 0.71499837 1524 Q9NPC7-3;Q9NPC7-2;Q9NPC7 MYNN Myoneurin yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 100.17 97.833 3 0.024028 1 66656 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.044 28.588 1837500 0 461870 0 0 0 1375600 2297 1524 2268 10144;10145 6712 6712 1 FAQHGTFEYEYSQR Unmodified 1761.7747 0.7746981 865 P23246;P23246-2;H0Y9K7 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 107.46 98.71 3 0.00035641 6 72464 20150910_Q1_SA_NiHu_Masterprac_group13_C 87.863 78.543 34335000 8786900 1050900 8226100 4837200 5397100 6037100 2298 865 2269 10146;10147;10148;10149;10150;10151;10152;10153 6713;6714;6715;6716;6717;6718 6715 6 FAQIDEK Unmodified 849.42323 0.42323303 1531 Q9NQS7-2;Q9NQS7 INCENP Inner centromere protein yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 69.531 55.045 2 0.015202 1 45020 20150910_Q1_SA_NiHu_Masterprac_group13_C 89.752 36.198 2173400 0 0 2173400 0 0 0 2299 1531 2270 10154 6719 6719 1 FAQPGSFEYEYAMR Oxidation (M) 1710.7348 0.73480712 1133 Q15233;F5GYZ3;C9JYS8;H7C367 NONO Non-POU domain-containing octamer-binding protein yes no 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 132.45 119.59 2 0.0041932 5 78750 20150910_Q1_SA_NiHu_Masterprac_group10_C 74.789 50.564 77127000 35305000 0 23498000 14227000 4097700 0 2300 1133 2271 10155;10156;10157;10158;10159 6720;6721;6722;6723;6724 6724 141 5 FARHVEPGNAAIREK Unmodified 1693.9012 0.90123601 637 H3BPK3;H3BPQ4;Q16775-2;Q16775 HAGH Hydroxyacylglutathione hydrolase, mitochondrial yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 60.279 52.884 4 0.00090194 2 37573 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.878 50.89 2604900 0 0 273950 705400 554280 1071300 2301 637 2272 10160;10161;10162;10163 6725;6726 6725 2 FASHCLMNHPDLAK Unmodified 1639.7599 0.75991643 1159 Q29RF7;Q29RF7-3;Q9NTI5-3;B7Z5S1;Q9NTI5-2;Q9NTI5 PDS5A;PDS5B Sister chromatid cohesion protein PDS5 homolog A;Sister chromatid cohesion protein PDS5 homolog B yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 97.264 90.261 3 1.7522E-124 1 61895 20150910_Q1_SA_NiHu_Masterprac_group15_B 153.32 120.75 16371000 0 990370 0 0 3417900 11963000 2302 1159 2273 10164;10165;10166 6727 6727 1 FASWALESDNNTALLLSKK Unmodified 2107.095 0.094969603 1076 Q13263-2;Q13263 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.18 130.57 3 0.03759 1 84001 20150910_Q1_SA_NiHu_Masterprac_group10_B 29.422 15.07 7531900 0 7531900 0 0 0 0 2303 1076 2274 10167 6728 6728 1 FATHAAALSVR Unmodified 1142.6196 0.61964142 865 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 91.547 82.156 2 0.0050529 2 56037 20150910_Q1_SA_NiHu_Masterprac_group10_B 73.951 51.372 3484800 1683300 824140 977370 0 0 0 2304 865 2275 10168;10169;10170 6729;6730 6729 2 FAVHRITPEEAK Unmodified 1396.7463 0.7462985 993 P62701;A6NH36 RPS4X 40S ribosomal protein S4, X isoform yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 89.909 73.867 3 0.032449 1 56424 20150910_Q1_SA_NiHu_Masterprac_group15_C 46.955 25.042 2107000 0 0 0 0 2107000 0 2305 993 2276 10171 6731 6731 1 FAVRDMRQTVAVGVIK Unmodified 1789.0033 0.0032582445 1006 Q5VTE0;P68104;Q6IQ15;Q05639 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1 131.72 124.52 3;4 5.3025E-18 6 86784 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.75 70.88 71007000 10355000 9936000 5594800 25266000 6695300 13160000 2306 1006 2277 10172;10173;10174;10175;10176;10177;10178;10179 6732;6733;6734;6735;6736;6737 6734 6 FAYRGVLNSPVK Unmodified 1349.7456 0.74557022 354 E7EP00;G5EA31;P53992;B4DZT4 SEC24C Protein transport protein Sec24C yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 121.11 116.45 3 0.0030602 1 79196 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.289 46.171 2799800 0 0 0 0 0 2799800 2307 354 2278 10180 6738 6738 1 FCAFGGNPPVTGPR Unmodified 1475.698 0.6979681 706 O15446;O15446-2 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 130.72 128.87 2 6.4849E-42 3 86302 20150910_Q1_SA_NiHu_Masterprac_group15_B 122.1 96.395 38169000 0 8016000 0 5432600 0 24720000 2308 706 2279 10181;10182;10183 6739;6740;6741 6741 3 FCCAVFAK Unmodified 1001.4463 0.44629343 1049 Q08AF3;Q08AF3-2;B4E128;Q8IYM2;F5H6G3;Q6IEE8-2;Q6IEE8 SLFN5;SLFN12;SLFN12L Schlafen family member 5;Schlafen family member 12;Schlafen family member 12-like yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 109.21 102.34 2 0.0074275 1 69864 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.602 97.602 4282000 0 0 0 759540 1585900 1936600 2309 1049 2280 10184;10185;10186 6742 6742 1 FCEADVSSDLRK Unmodified 1425.6558 0.65582851 1558 Q9NWY4;A8MVJ9 C4orf27 UPF0609 protein C4orf27;Putative UPF0609 protein C4orf27-like yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 99.642 93.175 3 0.020096 1 63780 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.829 4.8671 7147600 0 0 0 2036000 1385800 3725700 2310 1558 2281 10187;10188;10189 6743 6743 1 FCECDNFNCDRSNGLICGGNGVCK Unmodified 2852.1193 0.1193217 798 P05556;H7C4N8;P05556-2;P05556-5;P05556-4;P05556-3 ITGB1 Integrin beta-1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 127.62 124.83 3 6.4322E-09 2 84585 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.776 74.741 4262900 0 758390 0 0 0 3504500 2311 798 2282 10190;10191 6744;6745 6745 2 FCIQEIEK Unmodified 1065.5165 0.51648149 414 Q5JTH9-2;E9PCK7;Q5JTH9 RRP12 RRP12-like protein yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 127.45 122.13 2 1.4398E-25 3 77747 20150910_Q1_SA_NiHu_Masterprac_group10_C 136.27 77.486 59672000 26313000 5531100 0 4913300 0 22914000 2312 414 2283 10192;10193;10194;10195;10196 6746;6747;6748 6748 3 FCSFSCESSSSLK Unmodified 1524.6225 0.62247948 1594 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RJ97 TRPS1 Zinc finger transcription factor Trps1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 108.46 100.98 2 0.015794 1 68801 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.135 44.657 2330200 0 584200 414200 0 0 1331800 2313 1594 2284 10197;10198;10199 6749 6749 1 FCVDYAK Unmodified 901.40039 0.4003891 947 P49916-2;P49916 LIG3 DNA ligase 3 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 95.898 86.574 2 0.027408 2 63883 20150910_Q1_SA_NiHu_Masterprac_group15_C 86.472 29.925 3742100 608670 0 0 0 1358100 1775300 2314 947 2285 10200;10201;10202 6750;6751 6750 2 FDDAVVQSDMK Unmodified 1253.5598 0.55980286 824 P11142;E9PKE3;P11142-2;E9PNE6;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 110.83 100.19 2 0.013088 1 67347 20150910_Q1_SA_NiHu_Masterprac_group10_C 61.233 26.538 1898100 404400 686360 0 0 807340 0 2315 824 2286 10203;10204;10205 6752 6752 1 FDECVLDK Unmodified 1024.4535 0.45354688 529 F5H7V7;P51970 NDUFA8 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 99.394 94.28 2 6.7561E-05 2 64233 20150910_Q1_SA_NiHu_Masterprac_group15_B 114.89 90.375 4920900 113000 1669900 0 0 0 3138000 2316 529 2287 10206;10207;10208 6753;6754 6753 2 FDEIFSATR Unmodified 1084.5189 0.51892433 1362 Q92878-2;Q92878;Q92878-3;E7EN38;E7ESD9;C9JNH8 RAD50 DNA repair protein RAD50 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 132.71 117.02 2 0.014686 1 78456 20150910_Q1_SA_NiHu_Masterprac_group10_C 77.533 18.553 2372100 2372100 0 0 0 0 0 2317 1362 2288 10209 6755 6755 1 FDENGLPTHDMEGK Unmodified 1588.6828 0.68277155 938 P49589;P49589-3;A8MVQ3 CARS Cysteine--tRNA ligase, cytoplasmic yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 107.66 97.754 3 7.944E-05 1 70439 20150910_Q1_SA_NiHu_Masterprac_group15_C 89.747 74.585 10695000 2736400 926980 1124400 2959700 2947400 0 2318 938 2289 10210;10211;10212;10213;10214 6756 6756 1 FDENYAFLHR Unmodified 1310.6044 0.60438529 56 B0QYD2;Q9UH17;Q9UH17-2;B0QYD3 APOBEC3B DNA dC->dU-editing enzyme APOBEC-3B yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 130.41 125.45 3 0.015634 1 85151 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.654 49.665 1468400 0 0 0 0 0 1468400 2319 56 2290 10215 6757 6757 1 FDEVFSNK Unmodified 984.45526 0.45526144 1253 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 WAPAL Wings apart-like protein homolog yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 2 1 1 1 1 1 99.83 91.436 2 8.6105E-16 3 61696 20150910_Q1_SA_NiHu_Masterprac_group10_C 127.68 84.81 58448000 14975000 3971600 8315600 6976100 13618000 10592000 2320 1253 2291 10216;10217;10218;10219;10220;10221;10222 6758;6759;6760 6759 3 FDFDACNEVPPAPK Unmodified 1605.7133 0.71334339 1097;1137 Q14151;A8MXT5;C9JPX0;F5GXS4;Q15424;F5H1L1;F5H0H3;F5GZU3;B7Z959;B7Z2F6 SAFB2;SAFB Scaffold attachment factor B2;Scaffold attachment factor B1 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 132.7 123.18 2 3.1485E-56 8 85162 20150910_Q1_SA_NiHu_Masterprac_group10_B 130.66 99.615 79054000 12049000 16905000 10514000 7702000 5264300 26619000 2321 1097;1137 2292 10223;10224;10225;10226;10227;10228 6761;6762;6763;6764;6765;6766;6767;6768 6766 8 FDFDACNEVPPAPKESSTSEGADQK Unmodified 2725.1814 0.18135436 1097;1137 Q14151;A8MXT5;C9JPX0;F5GXS4;Q15424;F5H1L1;F5H0H3;F5GZU3;B7Z959;B7Z2F6 SAFB2;SAFB Scaffold attachment factor B2;Scaffold attachment factor B1 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 130.73 121.23 3 1.57E-79 8 81961 20150910_Q1_SA_NiHu_Masterprac_group13_C 116.45 108.57 78687000 21758000 6132700 26566000 7009400 4567600 12653000 2322 1097;1137 2293 10229;10230;10231;10232;10233;10234 6769;6770;6771;6772;6773;6774;6775;6776 6771 8 FDGSENRPFSPSPLNNISSTVTVKNNQETMIK Unmodified 3550.7362 0.73621069 1201 Q5UIP0-2;Q5UIP0 RIF1 Telomere-associated protein RIF1 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 133.2 132.6 4 2.4108E-11 1 86214 20150910_Q1_SA_NiHu_Masterprac_group10_B 54.363 42.432 8976500 0 8976500 0 0 0 0 2323 1201 2294 10235 6777 6777 1 FDLMYAK Unmodified 886.42588 0.42587556 518;44 G3V1U9;Q9BQE3;Q71U36;P68363;F5H5D3;F8VXZ4;Q6PEY2;Q13748;Q9NY65-2;Q9NY65;C9J2C0;F8VWX4;E7ET24;A6NHL2-2;A6NHL2;A8MUB1;P68366 TUBA1A;TUBA1C;TUBA1B;TUBA3E;TUBA3C;TUBA8;TUBAL3;TUBA4A Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-3E chain;Tubulin alpha-3C/D chain;Tubulin alpha-8 chain;Tubulin alpha chain-like 3;Tubulin alpha-4A chain no no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 129.53 127.68 2 2.8941E-13 2 85894 20150910_Q1_SA_NiHu_Masterprac_group15_B 128.86 59.685 48747000 0 10133000 0 1455100 0 37159000 2324 518;44 2295 10236;10237;10238 6778;6779 6778 2 FDNIGMNAMANKDNASLK Unmodified 1952.9084 0.90843116 1037 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 124.98 122.24 3 0.030882 1 82919 20150910_Q1_SA_NiHu_Masterprac_group15_B 35.624 17.39 2757100 0 765970 0 0 0 1991100 2325 1037 2296 10239;10240 6780 6780 1 FDRNSNDYDTSEK Unmodified 1589.6594 0.65939357 188 C9JZB0;F5GXZ0;B7Z4V9;Q9BT40-2;Q9BT40 INPP5K Inositol polyphosphate 5-phosphatase K yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 51.389 45.573 3 0.013829 1 37378 20150910_Q1_SA_NiHu_Masterprac_group13_C 52.5 45.057 5709400 0 1035500 1171600 622230 1203200 1676800 2326 188 2297 10241;10242;10243;10244;10245 6781 6781 1 FDRNSNDYDTSEKK Unmodified 1717.7544 0.75435658 188 C9JZB0;F5GXZ0;B7Z4V9;Q9BT40-2;Q9BT40 INPP5K Inositol polyphosphate 5-phosphatase K yes no 0 0 2 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 42.973 37.919 3 0.0043233 2 31981 20150910_Q1_SA_NiHu_Masterprac_group15_C 83.877 63.144 3432300 0 258020 721350 242150 649420 1561400 2327 188 2298 10246;10247;10248;10249;10250 6782;6783 6783 2 FDSEYER Unmodified 944.38758 0.3875758 52 P43243;A8MXP9;D6REM6;D6R991;H0Y8T4 MATR3 Matrin-3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 57.571 51.129 2 0.019919 1 36876 20150910_Q1_SA_NiHu_Masterprac_group10_B 105.39 93.344 5738600 523780 1592600 2247700 353970 338890 681640 2328 52 2299 10251;10252;10253;10254;10255;10256 6784 6784 1 FDSLTDLVEHYK Unmodified 1465.7089 0.70890994 1040 Q06124;Q06124-2;Q06124-3;H0YF12 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 132.24 114.5 2 0.032193 1 81251 20150910_Q1_SA_NiHu_Masterprac_group15_C 46.844 15.18 3724700 0 0 0 0 3724700 0 2329 1040 2300 10257 6785 6785 1 FDSNEEDSASVFSPSFGLKQTDKVPSK Unmodified 2945.3931 0.3930617 1035 Q02880-2;Q02880;B4DLV2 TOP2B DNA topoisomerase 2-beta yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 133.12 128.16 4 0.016969 1 88238 20150910_Q1_SA_NiHu_Masterprac_group15_B 30.916 19.109 18904000 0 0 0 0 0 18904000 2330 1035 2301 10258 6786 6786 1 FDYVAQQEQELDIKK Unmodified 1852.9207 0.92069363 223 C9J0K5;C9K098;C9JVV5;C9J869;P16333 NCK1 Cytoplasmic protein NCK1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 130.43 130.13 3 1.4799E-05 1 83317 20150910_Q1_SA_NiHu_Masterprac_group10_B 78.529 44.147 6273700 0 4555200 0 1718600 0 0 2331 223 2302 10259;10260 6787 6787 0 FEDEDSDDVPRK Unmodified 1450.6212 0.62121715 942 P49756 RBM25 RNA-binding protein 25 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 1 1 1 62.134 54.356 3 1.1627E-26 5 38555 20150910_Q1_SA_NiHu_Masterprac_group15_B 119.03 119.03 10647000 719030 1105500 2089600 540040 1905100 4287200 2332 942 2303 10261;10262;10263;10264;10265;10266;10267;10268 6788;6789;6790;6791;6792 6789 4 FEDENFILK Unmodified 1153.5655 0.56554017 999 P62937;Q567Q0;F8WE65;C9J5S7 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 136.17 133.69 2 3.8561E-282 2 86333 20150910_Q1_SA_NiHu_Masterprac_group10_B 191.45 89.388 13552000 0 0 0 13136000 0 415840 2333 999 2304 10269;10270;10271 6793;6794 6794 2 FEEAQSILKAPGTNVAMASNQAVR Unmodified 2531.2802 0.28022097 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 133.3 117.61 3 0.0018743 1 79078 20150910_Q1_SA_NiHu_Masterprac_group10_C 57.046 35.767 12579000 12579000 0 0 0 0 0 2334 945 2305 10272 6795 6795 0 FEEFQNTLSK Unmodified 1241.5928 0.59281755 907 P40222 TXLNA Alpha-taxilin yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 116.53 108.45 2 3.5758E-15 4 76665 20150910_Q1_SA_NiHu_Masterprac_group15_C 121.36 75.762 14070000 0 1991600 1742700 1193400 5230200 3912600 2335 907 2306 10273;10274;10275;10276;10277 6796;6797;6798;6799 6797 4 FEEFQTTMAK Unmodified 1230.5591 0.55907458 1546 Q9NUQ3;Q9NUQ3-2;Q9BZA4 TXLNG;CYorf15B Gamma-taxilin;Putative gamma-taxilin-like protein CYorf15B yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 114.44 107 2 0.019916 2 75679 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.694 18.714 7462200 0 760920 0 0 1849100 4852200 2336 1546 2307 10278;10279;10280 6800;6801 6800 2 FEEMFASR Unmodified 1015.4433 0.44331654 1448 Q9BTL3 FAM103A1 RNMT-activating mini protein yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 110.22 106.46 2 0.022624 1 72847 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.732 57.032 1713300 0 0 0 0 0 1713300 2337 1448 2308 10281 6802 6802 1 FEKTEDGGEFEEGASENNAK Unmodified 2186.924 0.92400069 720 O43719;E9PFP2 HTATSF1 HIV Tat-specific factor 1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 2 1 1 1 1 79.502 73.236 3 2.1252E-22 2 50596 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.5 81.06 8836600 1743600 977840 3205600 646110 0 2263300 2338 720 2309 10282;10283;10284;10285;10286;10287 6803;6804 6803 1 FEMEQNLR Unmodified 1065.4913 0.49132937 899 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 104.91 95.379 2 0.021358 1 63951 20150910_Q1_SA_NiHu_Masterprac_group10_B 78.77 39.223 1623600 0 1111800 0 0 511830 0 + 2339 899 2310 10288;10289 6805 6805 1 FEPPQSDSDGQRR Unmodified 1517.6859 0.68588309 378 O15042-2;E7ET15;O15042;E7EW00;H0Y8D9 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 55.14 49.074 3 0.024843 2 35160 20150910_Q1_SA_NiHu_Masterprac_group10_B 40.015 24.724 6005300 860910 988860 0 0 1632200 2523300 2340 378 2311 10290;10291;10292;10293 6806;6807 6807 2 FEPVHFVASSSK Unmodified 1333.6667 0.6666512 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 115.16 106.03 2 0.0071997 1 75273 20150910_Q1_SA_NiHu_Masterprac_group15_C 89.189 75.459 16047000 202540 1464500 1204800 1562500 5950300 5662800 2341 578 2312 10294;10295;10296;10297;10298;10299 6808 6808 1 FESPEVAER Unmodified 1062.4982 0.49818889 956 P52272-2;P52272;Q59ES8;F5H7Z1 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 84.136 76.424 2 0.0062516 6 52512 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.775 59.393 11863000 1701700 1856800 1054000 630400 3650700 2969600 2342 956 2313 10300;10301;10302;10303;10304;10305;10306 6809;6810;6811;6812;6813;6814 6812 6 FFGTEDHAWIK Unmodified 1349.6404 0.64043645 1168;1169 Q49A26-2;Q49A26;Q49A26-3;Q49A26-5 GLYR1 Putative oxidoreductase GLYR1 no no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 132.71 123.19 2;3 2.0495E-153 7 81736 20150910_Q1_SA_NiHu_Masterprac_group15_C 161.67 105.66 185820000 27698000 13250000 19264000 21704000 69985000 33924000 2343 1168;1169 2314 10307;10308;10309;10310;10311;10312;10313 6815;6816;6817;6818;6819;6820;6821 6818 7 FFGVIPSGK Unmodified 950.52255 0.52255314 896 P35251-2;P35251;E0CX09;D6RAD2 RFC1 Replication factor C subunit 1 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 133.08 132.78 2 0.0071345 2 86221 20150910_Q1_SA_NiHu_Masterprac_group13_B 89.08 33.638 14572000 0 8332600 0 6239500 0 0 2344 896 2315 10314;10315 6822;6823 6822 2 FFRHECYLK Unmodified 1298.623 0.62301224 1419 Q96SL8 FIZ1 Flt3-interacting zinc finger protein 1 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 82.784 76.951 3 0.017233 1 53037 20150910_Q1_SA_NiHu_Masterprac_group13_B 72.23 56.432 3041600 0 0 0 652660 650020 1739000 2345 1419 2316 10316;10317;10318 6824 6824 1 FFRNGDTASPK Unmodified 1238.6044 0.60438529 356 I3L2P8;F5H8J2;H7BZ94;E7EPA8;P07237;I3L3P5;I3NI03;I3L3U6 P4HB Protein disulfide-isomerase yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 55.792 51.405 3 0.01381 1 36772 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.691 60.691 2366500 0 585790 391710 288090 0 1100900 2346 356 2317 10319;10320;10321;10322 6825 6825 1 FFRVLNGYSLQHK Unmodified 1607.8572 0.85724593 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 2 131.74 126.78 3;4 0 2 86586 20150910_Q1_SA_NiHu_Masterprac_group15_B 202.18 145.76 143830000 0 0 0 0 0 143830000 2347 486 2318 10323;10324 6826;6827 6826 2 FFTEASEAK Unmodified 1028.4815 0.48147619 1341 Q8WUF8-3;Q8WUF8;B4DMI0;Q8WUF8-4 FAM172A Protein FAM172A yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 83.314 75.914 2 0.015286 1 59101 20150910_Q1_SA_NiHu_Masterprac_group13_C 76.17 54.484 3609600 0 528090 783940 237580 644490 1415500 2348 1341 2319 10325;10326;10327;10328;10329 6828 6828 1 FFTQPEK Unmodified 895.44397 0.44396847 1159 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 79.917 71.486 2 0.00024061 3 54711 20150910_Q1_SA_NiHu_Masterprac_group15_C 117.93 73.213 43482000 5438500 0 8027000 4612000 11672000 13733000 2349 1159 2320 10330;10331;10332;10333;10334 6829;6830;6831 6831 3 FFTTPSK Unmodified 826.4225 0.42250475 753 O76021;B4DJ58 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 83.334 75.756 2 0.0067714 5 58916 20150910_Q1_SA_NiHu_Masterprac_group13_C 96.19 62.675 20266000 3724800 1969500 1868300 2990800 6586300 3126000 2350 753 2321 10335;10336;10337;10338;10339;10340 6832;6833;6834;6835;6836 6833 4 FGDLTDNFSSPHAR Unmodified 1562.7114 0.71136956 593 P78563-2;P78563-3;P78563-4;G5E9B4;P78563;F5H398 ADARB1 Double-stranded RNA-specific editase 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 117.38 114.69 3 0.030705 1 78119 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.961 25.492 2611600 0 781650 0 0 0 1829900 2351 593 2322 10341;10342 6837 6837 1 FGDPVVQSDMK Unmodified 1221.57 0.56997362 619 P08107;H0YG33 HSPA1A Heat shock 70 kDa protein 1A/1B yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 1 110.96 100.92 2 0.0065944 4 66915 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.846 58.263 17370000 1466200 2260700 1627900 1395800 4039800 6579200 2352 619 2323 10343;10344;10345;10346;10347;10348;10349 6838;6839;6840;6841 6841 4 FGERALK Unmodified 819.46029 0.46028724 294 CON__P02769 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 49.887 42.416 2 0.031082 1 30351 20150910_Q1_SA_NiHu_Masterprac_group10_B 101.6 35.929 2408000 0 2273100 0 0 134910 0 + 2353 294 2324 10350;10351 6842 6842 1 FGEVVDCTLK Unmodified 1166.5642 0.56415996 126 D6RF44;H0YA96;D6RAF8;H0Y8G5;H7BXN2;Q14103-4;B4DTC3;Q14103-3;Q14103-2;Q14103;D6RD83;D6RBQ9 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 2 119.14 109.66 2 0.0016888 11 76349 20150910_Q1_SA_NiHu_Masterprac_group15_B 103.31 33.661 45073000 8525600 7406900 1983500 3974800 12573000 10610000 2354 126 2325 10352;10353;10354;10355;10356;10357;10358;10359;10360;10361 6843;6844;6845;6846;6847;6848;6849;6850;6851;6852;6853 6847 11 FGFAESIANQR Unmodified 1238.6044 0.60438529 330 Q06265-3;Q06265-4;D6RIY6;Q06265;Q06265-2 EXOSC9 Exosome complex component RRP45 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 131.05 129.19 2 1.1443E-55 3 86584 20150910_Q1_SA_NiHu_Masterprac_group15_B 141.91 109.88 64464000 0 17794000 0 4194100 0 42475000 2355 330 2326 10362;10363;10364 6854;6855;6856 6855 3 FGGLQNKAPPMDKLR Unmodified 1670.8926 0.89264516 23 A6NHR9;A6NHR9-2 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 114.45 103.57 4 0.015689 1 70853 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.69 30.454 5753300 664570 944130 897150 0 399980 2847400 2356 23 2327 10365;10366;10367;10368;10369 6857 6857 1 FGGNPGGFGNQGGFGNSR Unmodified 1725.7608 0.76077937 1073 Q13148;Q13148-2;B4DJ45 TARDBP TAR DNA-binding protein 43 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 122.95 113.48 2 1.6414E-32 5 80744 20150910_Q1_SA_NiHu_Masterprac_group13_C 110.77 78.066 16376000 3419500 1648600 3232300 986620 1521400 5567400 2357 1073 2328 10370;10371;10372;10373;10374;10375 6858;6859;6860;6861;6862 6859 5 FGGSRAGPLSGK Unmodified 1132.5989 0.59890598 853 P17844;E7ETL9 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 63.946 56.177 2 0.037527 1 41501 20150910_Q1_SA_NiHu_Masterprac_group10_C 55.291 4.0152 2162800 2162800 0 0 0 0 0 2358 853 2329 10376 6863 6863 1 FGHGRFQTMEEK Unmodified 1465.6772 0.67723266 905 P39023;G5E9G0 RPL3 60S ribosomal protein L3 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 69.953 64.889 3 0.0027593 3 52365 20150910_Q1_SA_NiHu_Masterprac_group13_C 73.499 34.92 13922000 0 987140 3045000 5757600 0 4131800 2359 905 2330 10377;10378;10379;10380 6864;6865;6866 6865 3 FGISEPGNQEK Unmodified 1204.5724 0.57241646 945;1251 P49792;E9PGT0;P0DJD0;P0DJD1;F8VYC4;Q99666;O14715;Q7Z3J3;B4DZH4 RANBP2;RGPD1;RGPD2;RGPD5;RGPD8;RGPD4 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8;RanBP2-like and GRIP domain-containing protein 4 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 90.942 83.021 2 8.6933E-13 7 61701 20150910_Q1_SA_NiHu_Masterprac_group15_C 115.29 88.5 23495000 3219700 4765200 2792100 1640600 4568400 6509000 2360 945;1251 2331 10381;10382;10383;10384;10385;10386;10387 6867;6868;6869;6870;6871;6872;6873 6870 7 FGIVTSSAGTGTTEDTEAK Unmodified 1870.8796 0.87961668 621 P82979;H0YHG0 SARNP SAP domain-containing ribonucleoprotein yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 122.07 104.92 2 0.0021518 1 74440 20150910_Q1_SA_NiHu_Masterprac_group15_C 51.798 35.051 1042800 0 0 0 0 1042800 0 2361 621 2332 10388 6874 6874 1 FGLESHAHTIQICK Unmodified 1639.8141 0.81406049 1321 Q8NE71;Q8NE71-2;H0YGW7;Q5STZ7 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 116.7 104.95 3 5.8517E-31 3 72070 20150910_Q1_SA_NiHu_Masterprac_group15_B 118.76 118.76 3982600 877590 0 0 0 680620 2424400 2362 1321 2333 10389;10390;10391 6875;6876;6877 6875 3 FGNTEQGFK Unmodified 1026.4771 0.47705951 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 71.656 64.328 2 1.9031E-06 5 50139 20150910_Q1_SA_NiHu_Masterprac_group15_C 113.66 61.709 34282000 4199800 5788200 4168800 2145300 7405800 10574000 2363 945 2334 10392;10393;10394;10395;10396;10397 6878;6879;6880;6881;6882 6881 5 FGNVYLAR Unmodified 938.4974 0.49740102 698;111 O14965;A3KFJ0;Q5QPD4;A3KFJ1;Q9UQB9-2;Q9UQB9-3;Q9UQB9;B4DNM4;C7G535;Q96GD4 AURKA;AURKC;AURKB Aurora kinase A;Aurora kinase C;Aurora kinase B no no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 113.45 104.54 2 1.0093E-15 5 69091 20150910_Q1_SA_NiHu_Masterprac_group10_B 127.12 98.899 118720000 3519000 19782000 19166000 8297300 14594000 53362000 2364 698;111 2335 10398;10399;10400;10401;10402;10403;10404;10405 6883;6884;6885;6886;6887 6886 5 FGQGAHHAAGQAGNEAGR Unmodified 1734.7935 0.79347648 409 E9PBV3 SBSN Suprabasin yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 35.512 30.047 4 0.031711 1 25682 20150910_Q1_SA_NiHu_Masterprac_group15_C 34.382 17.496 2408600 0 345960 811240 0 899460 351950 2365 409 2336 10406;10407;10408;10409 6888 6888 1 FGQGDLPKPINSDFR Unmodified 1689.8475 0.84746911 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 132.31 127.34 3 0.0073455 2 87252 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.108 27.617 13378000 0 0 0 0 0 13378000 2366 945 2337 10410;10411 6889;6890 6889 2 FGQGGAGPVGGQGPR Unmodified 1340.6585 0.65854613 865 P23246 SFPQ Splicing factor, proline- and glutamine-rich yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 78.078 70.567 2 0.0024265 6 49844 20150910_Q1_SA_NiHu_Masterprac_group10_C 59.75 46.328 47480000 6594100 9938700 6978000 5716900 10107000 8145000 2367 865 2338 10412;10413;10414;10415;10416;10417 6891;6892;6893;6894;6895;6896 6896 6 FGQGVDNAAGQAGNEAGR Unmodified 1717.7768 0.77682336 409 E9PBV3 SBSN Suprabasin yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 82.277 74.256 2 0.017465 1 56650 20150910_Q1_SA_NiHu_Masterprac_group15_C 48.376 37.761 838580 0 0 0 158910 679670 0 2368 409 2339 10418;10419 6897 6897 0 FGTEELFK Unmodified 969.48075 0.48074791 486;430 F5H2G1;F5GWX5;Q14839;Q14839-2;Q12873;E9PG89;Q12873-2 CHD4;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 no no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 132.56 122.35 2 1.4398E-25 5 87451 20150910_Q1_SA_NiHu_Masterprac_group15_B 136.27 87.512 258140000 0 0 35118000 3584400 9657000 209780000 2369 486;430 2340 10420;10421;10422;10423;10424 6898;6899;6900;6901;6902 6900 5 FGTEELFKDEATDGGGDNK Unmodified 2028.8912 0.891244 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 130.26 127.47 3 3.6912E-17 3 85803 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.095 74.022 24194000 0 9926100 0 0 0 14268000 2370 486 2341 10425;10426 6903;6904;6905 6903 3 FGTEELFKDENEGENKEEDSSVIHYDNEAIAR Unmodified 3713.6605 0.66052236 430 Q12873;E9PG89;Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 132.56 127.6 4 7.2049E-18 1 87564 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.932 54.578 6788000 0 0 0 0 0 6788000 2371 430 2342 10427 6906 6906 1 FGTFGGLGSK Unmodified 969.49198 0.4919813 1054 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 119.27 114.7 2 0.004291 2 78079 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.056 61.951 1717000 0 0 0 0 0 1717000 2372 1054 2343 10428 6907;6908 6907 2 FGTSETSKAPK Unmodified 1151.5823 0.58225287 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 43.686 37.94 2 2.0707E-07 4 26837 20150910_Q1_SA_NiHu_Masterprac_group15_B 108.98 79.217 9267900 1786500 0 3091800 785550 1404300 2199700 2373 945 2344 10429;10430;10431;10432;10433;10434 6909;6910;6911;6912 6910 4 FGVEQDRMDK Unmodified 1223.5605 0.56047157 1104 Q14247;Q14247-3;Q14247-2;H7C314 CTTN Src substrate cortactin yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 71.195 63.867 3 0.008731 4 46145 20150910_Q1_SA_NiHu_Masterprac_group10_C 81.525 81.525 10762000 1081400 1691100 2399800 1090700 1518900 2979600 2374 1104 2345 10435;10436;10437;10438;10439;10440 6913;6914;6915;6916 6916 4 FGVQSERQDSAAVGFDYKEK Unmodified 2260.076 0.076025075 1104 Q14247 CTTN Src substrate cortactin yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 113.15 109.28 3 0.0039179 1 74773 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.848 41.924 0 0 0 0 0 0 0 2375 1104 2346 10441 6917 6917 1 FGVSSESKPEEVKK Unmodified 1549.7988 0.79878758 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 2 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 65.244 55.269 3 4.6798E-12 2 44630 20150910_Q1_SA_NiHu_Masterprac_group15_C 101.38 76.683 31674000 5600200 10979000 5913400 0 9181000 0 2376 531 2347 10442;10443;10444;10445 6918;6919 6918 2 FHCPHCDTVIARK Unmodified 1639.7711 0.77114982 940 P49711;B5MC38 CTCF Transcriptional repressor CTCF yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 66.059 57.911 4 0.036068 1 46561 20150910_Q1_SA_NiHu_Masterprac_group15_C 36.954 18.75 2621200 0 0 0 0 1492800 1128400 2377 940 2348 10446;10447 6920 6920 1 FHEAQLSEK Unmodified 1087.5298 0.52982336 100 E9PF10;O75694-2;B4DLT2;O75694 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 54.343 48.628 2 0.0067401 2 39832 20150910_Q1_SA_NiHu_Masterprac_group13_C 96.342 52.534 5265600 699560 2313300 1855400 397380 0 0 2378 100 2349 10448;10449;10450;10451 6921;6922 6921 2 FHPIQGHRVEVK Unmodified 1445.7892 0.78916637 1074 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 62.444 57.693 3 0.0018591 3 46138 20150910_Q1_SA_NiHu_Masterprac_group15_C 82.494 50.505 16200000 0 729680 0 4816400 8850400 1803700 2379 1074 2350 10452;10453;10454;10455 6923;6924;6925 6924 3 FHPIQGHRVEVKK Unmodified 1573.8841 0.88412939 1074 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 54.956 47.811 3 0.024259 1 39681 20150910_Q1_SA_NiHu_Masterprac_group15_C 57.885 14.589 2565500 0 0 0 0 2064600 500890 2380 1074 2351 10456;10457 6926 6926 1 FIADGCKEALLEEK Unmodified 1621.8022 0.8021584 1595 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 122.75 114.91 3 0.03287 1 74600 20150910_Q1_SA_NiHu_Masterprac_group13_B 40.88 15.552 4710300 3813300 0 0 897030 0 0 2381 1595 2352 10458;10459 6927 6927 1 FIASTGMDR Unmodified 996.46987 0.46986564 1613 Q9UMS4;H0YGZ5 PRPF19 Pre-mRNA-processing factor 19 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 85.355 77.777 2 0.0060651 4 53552 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.649 31.687 27689000 2140200 2773800 1873200 2633700 8653700 9614000 2382 1613 2353 10460;10461;10462;10463;10464;10465 6928;6929;6930;6931 6929 4 FICTTSAIQNR Unmodified 1309.6449 0.6448699 168 B4E3P0;P53396-2;P53396;E7ENH9 ACLY ATP-citrate synthase yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 94.604 92.622 2 5.2361E-08 2 63210 20150910_Q1_SA_NiHu_Masterprac_group15_B 110.39 62.103 3041200 0 513630 0 0 0 2527500 2383 168 2354 10466;10467 6932;6933 6932 2 FICTTSAIQNRFK Unmodified 1584.8082 0.80824683 168 B4E3P0;P53396-2;P53396;E7ENH9 ACLY ATP-citrate synthase yes no 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 122.46 120.08 3 0.0043885 2 77056 20150910_Q1_SA_NiHu_Masterprac_group13_B 62.338 37.643 6574800 0 0 0 1980600 0 4594200 2384 168 2355 10468;10469 6934;6935 6934 2 FIEIAAR Unmodified 818.46504 0.46503826 1022;1023 Q00839;B3KX72;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 110.42 99.838 2 0.010406 5 66651 20150910_Q1_SA_NiHu_Masterprac_group10_C 110.61 41.222 65952000 7099800 6873100 7937400 0 19565000 24477000 2385 1022;1023 2356 10470;10471;10472;10473;10474 6936;6937;6938;6939;6940 6940 5 FINDQYEK Unmodified 1055.4924 0.49237523 1593 Q9UHD8-3;Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;F5GWR9;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 75.64 68.571 2 0.034536 1 47999 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.825 26.017 4665300 417850 751960 0 0 1596300 1899200 2386 1593 2357 10475;10476;10477;10478 6941 6941 1 FINHCCTPNCYAK Unmodified 1683.6956 0.69560161 703 O15047 SETD1A Histone-lysine N-methyltransferase SETD1A yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 78.275 69.301 3 0.0018602 4 48291 20150910_Q1_SA_NiHu_Masterprac_group10_B 67.252 59.809 6186600 599790 988470 682930 0 1141500 2773900 2387 703 2358 10479;10480;10481;10482;10483 6942;6943;6944;6945 6944 4 FINYVKNCFR Unmodified 1359.6758 0.6757761 801 P06748-2;P06748 NPM1 Nucleophosmin yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 2 1 127.04 115.76 2;3 0.00024739 6 76429 20150910_Q1_SA_NiHu_Masterprac_group10_C 106.68 106.68 116120000 63423000 4603500 17115000 3815400 18443000 8718400 2388 801 2359 10484;10485;10486;10487;10488;10489;10490;10491 6946;6947;6948;6949;6950;6951 6950 6 FIQTFGK Unmodified 839.45414 0.45413923 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 96.978 89.378 2 0.00054892 4 61139 20150910_Q1_SA_NiHu_Masterprac_group15_B 116.54 85.253 76689000 0 6708500 4769300 3662800 17610000 43939000 2389 1012 2360 10492;10493;10494;10495;10496 6952;6953;6954;6955 6954 4 FIQTFGKEFDK Unmodified 1358.6871 0.68705229 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 2 1 2 126.64 119.69 2;3 2.9802E-41 6 83222 20150910_Q1_SA_NiHu_Masterprac_group15_B 132.03 70.815 45845000 7639000 4183100 7234800 3353100 8071100 15364000 2390 1012 2361 10497;10498;10499;10500;10501;10502;10503;10504;10505 6956;6957;6958;6959;6960;6961 6959 6 FIQTFGKEFDKHFGK Unmodified 1827.9308 0.93080481 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 130.4 130.4 4 0.00024893 1 83420 20150910_Q1_SA_NiHu_Masterprac_group13_B 86.262 54.667 3016500 0 0 0 3016500 0 0 2391 1012 2362 10506 6962 6962 1 FIRVQNEGTGK Unmodified 1247.6622 0.66223452 14 A8MYZ6;A6NCE0;Q12778 FOXO6;FOXO1 Forkhead box protein O6;Forkhead box protein O1 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 59.808 53.182 3 0.0068574 3 38157 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.65 40.693 7421700 782940 1192000 1871800 736760 1052600 1785600 2392 14 2363 10507;10508;10509;10510;10511;10512 6963;6964;6965 6964 3 FIVCLNK Unmodified 892.48406 0.48405915 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 124.21 121.48 2 0.040671 1 82360 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.381 21.023 6398800 0 1651200 0 0 0 4747600 2393 1012 2364 10513;10514 6966 6966 1 FKDLGEEHFK Unmodified 1248.6139 0.61388734 294 CON__P02769 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 83.65 76.072 3 2.5331E-06 5 52426 20150910_Q1_SA_NiHu_Masterprac_group10_B 112.83 112.83 40090000 2288700 7613900 3108400 2593400 9438600 15047000 + 2394 294 2365 10515;10516;10517;10518;10519;10520 6967;6968;6969;6970;6971 6971 5 FKEDLLNNGQPR Unmodified 1429.7314 0.73137672 1343 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-5;Q8WX93-4;Q8WX93-2;Q8WX93-9 PALLD Palladin yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 101.83 92.184 3 0.0068234 1 63033 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.528 44.433 5299600 0 904730 883790 0 1371500 2139500 2395 1343 2366 10521;10522;10523;10524 6972 6972 1 FKLITEDVQGK Unmodified 1276.7027 0.70270235 321 D6RAT0;P61247;D6RG13;D6RB09;F5H4F9;E9PFI5;D6RED7;D6RAS7;H0Y8L7;D6RGE0 RPS3A 40S ribosomal protein S3a yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 118.33 109.71 3 0.003673 1 71810 20150910_Q1_SA_NiHu_Masterprac_group13_B 81.625 39.414 17263000 0 0 0 2792500 14470000 0 2396 321 2367 10525;10526 6973 6973 1 FKLQDVADSFKK Unmodified 1424.7664 0.76636524 945;1251 P49792;E9PGT0;P0DJD0;P0DJD1;F8VYC4;Q99666;O14715;E7ES93;B4DTM4;Q7Z3J3 RANBP2;RGPD1;RGPD2;RGPD5;RGPD8;RGPD4 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8;RanBP2-like and GRIP domain-containing protein 4 no no 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 132.34 114.6 3 0.0022992 2 87502 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.278 36.714 2850300 0 0 0 0 2850300 0 2397 945;1251 2368 10527;10528 6974;6975 6974 2 FLALQGDMEQALENYDICTEMLQSSTAIQVEAGAERR Unmodified 4186.9609 0.9609436 595 G5E9F3;Q9Y6J0 CABIN1 Calcineurin-binding protein cabin-1 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 130.89 130.89 6 0.029193 1 83892 20150910_Q1_SA_NiHu_Masterprac_group13_B 8.9121 3.1858 11591000 0 0 0 11591000 0 0 2398 595 2369 10529 6976 6976 1 FLDQNLQK Unmodified 1004.5291 0.52909508 840 P15924;P15924-2;H7BYR0 DSP Desmoplakin yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 90.462 83.002 2 0.0088122 2 56870 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.162 44.368 4705400 0 1032000 811250 442330 612250 1807500 2399 840 2370 10530;10531;10532;10533;10534 6977;6978 6977 2 FLEELGEGK Unmodified 1020.5128 0.51277632 352;968 P55265;P55265-4;E7ENU4;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 118.63 108.53 2 0.0071345 1 71448 20150910_Q1_SA_NiHu_Masterprac_group10_B 89.08 45.31 2648000 0 846520 249890 0 359190 1192400 2400 352;968 2371 10535;10536;10537;10538 6979 6979 1 FLEHLSGAGK Unmodified 1057.5556 0.55564418 1031 Q01813 PFKP 6-phosphofructokinase type C yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 85.299 77.737 2 3.041E-09 5 58822 20150910_Q1_SA_NiHu_Masterprac_group15_C 117.02 62.3 8667900 706180 879470 1752700 1087200 2344900 1897400 2401 1031 2372 10539;10540;10541;10542;10543;10544 6980;6981;6982;6983;6984 6982 5 FLEKYPSAEVAR Unmodified 1408.7351 0.73506511 769 O95243-2 MBD4 Methyl-CpG-binding domain protein 4 no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 110.54 97.872 3 0.0055191 1 66685 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.966 44.307 6980800 836830 0 620080 0 1823700 3700200 2402 769 2373 10545;10546;10547;10548 6985 6985 1 FLENVAAAETEKQVALAQGR Unmodified 2144.1226 0.12258134 1659 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.7 132.09 3 0.025444 1 85625 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.031 23.712 0 0 0 0 0 0 0 2403 1659 2374 10549 6986 6986 1 FLEQQNQVLQTK Unmodified 1474.778 0.77799256 302;789 P35908;CON__P35908;CON__Q6NXH9;CON__Q6IFZ6;Q7Z794;CON__Q7Z794;P04264;CON__P04264 KRT2;KRT77;KRT1 Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 1 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 113.22 104.14 2 3.0104E-223 7 71095 20150910_Q1_SA_NiHu_Masterprac_group15_B 180.61 108.46 45300000 2903700 19200000 5118000 3991900 2621800 11464000 + 2404 302;789 2375 10550;10551;10552;10553;10554;10555 6987;6988;6989;6990;6991;6992;6993 6990 7 FLESLPEEEQQRVLGEEK Unmodified 2159.0746 0.074628091 455 E9PKP7;P17480-2;P17480 UBTF Nucleolar transcription factor 1 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 133.02 116.25 3 0.00081364 2 81760 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.379 53.858 173920000 14297000 0 0 0 159630000 0 2405 455 2376 10556;10557 6994;6995 6994 1 FLESTDSFNNELK Unmodified 1542.7202 0.72020291 85 C0IMW5;B4DFR4;Q969G3-2;B4DGM3;Q969G3;H7C048;H7BXG8;H7C3F6 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 132.6 122.25 2 2.3496E-131 4 87749 20150910_Q1_SA_NiHu_Masterprac_group15_B 157.33 95.803 67628000 0 15593000 14890000 0 5656700 31489000 2406 85 2377 10558;10559;10560;10561 6996;6997;6998;6999 6997 3 FLESYATDNEK Unmodified 1315.5932 0.59321148 1055 Q0VAK7;Q9BZI7-2;Q9BZI7 UPF3B Regulator of nonsense transcripts 3B yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1 99.693 91.299 2 9.2367E-08 9 62222 20150910_Q1_SA_NiHu_Masterprac_group10_C 108.35 93.917 18857000 4133900 2062900 2591100 2126300 2857600 5085700 2407 1055 2378 10562;10563;10564;10565;10566;10567;10568 7000;7001;7002;7003;7004;7005;7006;7007;7008 7008 9 FLHSSIFEQDSK Unmodified 1436.6936 0.69359423 1422 Q96T58 SPEN Msx2-interacting protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 121.6 111.83 3 0.0091413 1 78656 20150910_Q1_SA_NiHu_Masterprac_group15_C 58.172 25.877 2059000 0 647480 0 0 1411600 0 2408 1422 2379 10569;10570 7009 7009 1 FLIDKNGCVVK Unmodified 1291.6958 0.69584284 902 P36969-2;P36969 GPX4 Phospholipid hydroperoxide glutathione peroxidase, mitochondrial yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 3 112.8 103.14 2;3 5.0456E-08 7 68101 20150910_Q1_SA_NiHu_Masterprac_group13_B 110.53 45.256 35723000 11457000 0 4331800 9049200 5584300 5300700 2409 902 2380 10571;10572;10573;10574;10575;10576;10577;10578;10579;10580 7010;7011;7012;7013;7014;7015;7016 7010 7 FLKSTEEQELEK Unmodified 1479.7457 0.74568938 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 86.521 78.067 3 4.131E-80 4 53808 20150910_Q1_SA_NiHu_Masterprac_group10_C 148.13 104.63 10354000 4161900 0 4284400 1908100 0 0 2410 1611 2381 10581;10582;10583 7017;7018;7019;7020 7020 4 FLQVHASSGHK Unmodified 1209.6255 0.62545508 1443 Q9BRX2 PELO Protein pelota homolog yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 2 56.549 44.268 2;3 0.010215 2 36414 20150910_Q1_SA_NiHu_Masterprac_group13_C 64.64 36.868 4996100 0 0 4996100 0 0 0 2411 1443 2382 10584;10585 7021;7022 7022 2 FLQVHASSGHKYSLK Unmodified 1700.8998 0.89983903 1443 Q9BRX2 PELO Protein pelota homolog yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 89.057 80.286 4 0.023023 1 55527 20150910_Q1_SA_NiHu_Masterprac_group10_C 41.621 20.375 1577600 1577600 0 0 0 0 0 2412 1443 2383 10586 7023 7023 1 FLRPSDDEELSFHSK Unmodified 1805.8584 0.85842773 1163 Q2TBE0-3;Q2TBE0-2;Q2TBE0;H0YE03;H7C3G7 CWF19L2 CWF19-like protein 2 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 2 118.7 111.47 3;4 1.326E-70 6 76388 20150910_Q1_SA_NiHu_Masterprac_group15_B 135.14 118.56 11367000 0 1980900 4607800 0 0 4777800 2413 1163 2384 10587;10588;10589;10590 7024;7025;7026;7027;7028;7029 7027 6 FLRSIRPDNMSEYSK Unmodified 1841.9094 0.90941744 1086;1358 Q92769;H3BM24;B3KRS5;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9;Q13547;Q5TEE2 HDAC2;HDAC1 Histone deacetylase 2;Histone deacetylase;Histone deacetylase 1 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 3 2 2 3 112.3 102.82 3;4 0.00024893 7 67975 20150910_Q1_SA_NiHu_Masterprac_group13_B 86.262 65.479 315080000 8070100 25508000 72024000 14512000 11852000 183120000 2414 1358;1086 2385 10591;10592;10593;10594;10595;10596;10597;10598;10599;10600;10601;10602;10603;10604;10605 7030;7031;7032;7033;7034;7035;7036 7030 7 FLSLQSEHK Unmodified 1087.5662 0.56620887 936 P49454 CENPF Centromere protein F yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 81.061 79.74 2 0.010415 1 54745 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.615 63.167 1825600 0 626840 0 233400 0 965350 2415 936 2386 10606;10607;10608 7037 7037 1 FLSREDQVILR Unmodified 1374.7619 0.76194857 1498 Q9H6T0-2;Q9H6T0 ESRP2 Epithelial splicing regulatory protein 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 121.19 116.52 3 0.0098672 2 79292 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.278 28.861 2139300 0 0 0 0 0 2139300 2416 1498 2387 10609 7038;7039 7038 2 FLTGLAGASDTNSSK Unmodified 1467.7205 0.72053726 1671 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 99.643 82.651 3 0.0042909 1 63070 20150910_Q1_SA_NiHu_Masterprac_group13_C 52.891 15.278 6765000 0 0 6765000 0 0 0 + 2417 1671 2388 10610 7040 7040 1 FLVSQNVDGLHVR Unmodified 1482.7943 0.79431133 1306 Q8N6T7-4;Q8N6T7-2;Q8N6T7;B4DDV3 SIRT6 NAD-dependent protein deacetylase sirtuin-6 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 2 131.76 128.25 2;3 0.0042879 3 86909 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.11 34.699 40813000 0 4658100 0 0 0 36155000 2418 1306 2389 10611;10612;10613 7041;7042;7043 7041 3 FLVTPQDYAR Unmodified 1208.619 0.61897272 1263 Q86UT8;E9PJ16;E9PPT8 CCDC84 Coiled-coil domain-containing protein 84 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 132.54 121.85 2 6.9298E-48 6 83991 20150910_Q1_SA_NiHu_Masterprac_group10_B 140.16 76.63 364590000 38360000 66104000 43532000 15093000 123010000 78490000 2419 1263 2390 10614;10615;10616;10617;10618;10619;10620 7044;7045;7046;7047;7048;7049 7048 6 FLVTPQDYARFKK Unmodified 1611.8773 0.87731267 1263 Q86UT8;E9PJ16 CCDC84 Coiled-coil domain-containing protein 84 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 130.82 130.82 4 0.016341 1 83766 20150910_Q1_SA_NiHu_Masterprac_group13_B 49.632 14.733 1678600 0 0 0 1678600 0 0 2420 1263 2391 10621 7050 7050 1 FMATLGPEEEAEK Unmodified 1450.665 0.66499622 1587 Q9UFC0;H7C5S6 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 118.08 116.25 2 0.0030946 3 79053 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.104 64.104 4478500 0 1172100 0 639320 0 2667100 2421 1587 2392 10622;10623;10624 7051;7052;7053 7052 3 FMGTELNGK Unmodified 995.47462 0.47461667 711 O43175;Q5SZU1;F5H634 PHGDH D-3-phosphoglycerate dehydrogenase yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 93.303 85.722 2 0.0066274 1 58727 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.087 61.313 6603300 0 730960 843580 705190 1544700 2778800 2422 711 2393 10625;10626;10627;10628;10629 7054 7054 1 FMNHCCQPNCETQK Unmodified 1852.7113 0.71132803 1404 Q96L73-2;Q96L73-3;Q96L73 NSD1 Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 54.362 48.345 3 0.0012515 1 34554 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.774 82.774 3930700 0 770270 469830 472390 672530 1545700 2423 1404 2394 10630;10631;10632;10633;10634 7055 7055 1 FMQEVYLDK Unmodified 1171.5583 0.5583463 1549 Q9NVN8;Q52LT0 GNL3L Guanine nucleotide-binding protein-like 3-like protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 126.01 123.23 2 0.006502 1 83470 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.658 45.202 1772800 0 360310 0 0 0 1412500 2424 1549 2395 10635;10636 7056 7056 1 FMQRGLDSETK Unmodified 1310.6289 0.62888548 1427 Q99547;H3BNK8;H3BU96 MPHOSPH6 M-phase phosphoprotein 6 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 2 1 1 1 2 66.22 60.597 2;3 0.005387 3 42540 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.848 27.187 6828000 0 1150100 957750 493070 1250600 2976400 2425 1427 2396 10637;10638;10639;10640;10641;10642;10643 7057;7058;7059 7058 3 FMSVQRPGPYDRPGTAR Unmodified 1933.9581 0.95809897 958 P52597;B4DKS8 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 99.574 90.401 3;4 0.0059818 3 66484 20150910_Q1_SA_NiHu_Masterprac_group15_C 56.514 45.139 610300000 11908000 0 68026000 70491000 151230000 308640000 2426 958 2397 10644;10645;10646;10647;10648;10649;10650;10651;10652 7060;7061;7062 7062 3 FNAHGDANTIVCNSK Unmodified 1646.7471 0.74710314 812 P09382 LGALS1 Galectin-1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 1 2 2 80.639 72.432 2;3 0.0011114 7 57099 20150910_Q1_SA_NiHu_Masterprac_group13_C 69.045 58.099 89456000 1914200 19355000 7967000 3938500 12656000 43625000 2427 812 2398 10653;10654;10655;10656;10657;10658;10659;10660;10661;10662 7063;7064;7065;7066;7067;7068;7069 7063 7 FNAHGDANTIVCNSKDGGAWGTEQR Unmodified 2704.2048 0.20482419 812 P09382 LGALS1 Galectin-1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 106.08 104.68 4 0.012198 1 69081 20150910_Q1_SA_NiHu_Masterprac_group10_B 35.16 26.975 1032900 0 1032900 0 0 0 0 2428 812 2399 10663 7070 7070 1 FNQNRPWSETIK Unmodified 1518.7579 0.75792582 1143 Q15648;Q15648-3 MED1 Mediator of RNA polymerase II transcription subunit 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 109.5 99.294 3 0.015937 1 67753 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.343 8.579 1837300 0 0 0 0 384820 1452500 2429 1143 2400 10664;10665 7071 7071 1 FNTTSVIK Unmodified 908.49673 0.49673232 92 B4DK30;Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 88.739 86.883 2 0.02381 1 59515 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.679 41.241 1398900 0 0 0 0 0 1398900 2430 92 2401 10666 7072 7072 1 FNVWDTAGQEK Unmodified 1293.599 0.59896556 173 P62826;B5MDF5;F5H018;H0YFC6 RAN GTP-binding nuclear protein Ran yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 128.3 125.51 2 0.010566 1 80468 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.224 46.439 7296100 0 791320 0 0 0 6504800 2431 173 2402 10667;10668 7073 7073 1 FQAFKGVGCLYEK Unmodified 1545.765 0.76498503 27 F5H101;Q76FK4-2;Q76FK4-4;A6NJK7;Q76FK4;F8WE42;Q76FK4-3 NOL8 Nucleolar protein 8 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 131.94 131.64 3 0.0015585 2 85002 20150910_Q1_SA_NiHu_Masterprac_group13_B 88.224 44.463 49791000 0 10426000 0 39364000 0 0 2432 27 2403 10669;10670 7074;7075 7074 2 FQEEANLYAAK Unmodified 1282.6194 0.61936665 191 P40426-4;P40426-3;B7Z5Q0;P40426-2;E9PB27;P40426;Q5JS98 PBX3 Pre-B-cell leukemia transcription factor 3 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 101.98 93.769 2 0.0027813 2 68229 20150910_Q1_SA_NiHu_Masterprac_group15_C 85.813 41.249 11554000 249320 2512600 1115400 1345200 1259700 5071600 2433 191 2404 10671;10672;10673;10674;10675;10676 7076;7077 7077 2 FQETEFLSPPRKVPR Unmodified 1829.9788 0.97881763 913 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 2 4 1 129.86 118.55 3;4 2.804E-21 10 84343 20150910_Q1_SA_NiHu_Masterprac_group15_B 111.88 95.944 365980000 95017000 29941000 94543000 20389000 51058000 75031000 2434 913 2405 10677;10678;10679;10680;10681;10682;10683;10684;10685;10686;10687;10688;10689 7078;7079;7080;7081;7082;7083;7084;7085;7086;7087 7084 10 FQGASNLTLSETQNGDVSEETMGSRKVK Unmodified 3012.4458 0.44584232 1550 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 125.92 116.45 4 1.137E-17 5 80805 20150910_Q1_SA_NiHu_Masterprac_group13_C 66.609 56.587 29466000 15048000 685280 7167500 2015700 1080700 3468800 2435 1550 2406 10690;10691;10692;10693;10694;10695 7088;7089;7090;7091;7092 7089 5 FQGEPKKPPMNGYQK Unmodified 1747.8716 0.87157537 455 E9PKP7;P17480-2;P17480;E9PLT2 UBTF Nucleolar transcription factor 1 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 75.034 67.581 4 0.0022143 1 52547 20150910_Q1_SA_NiHu_Masterprac_group15_C 59.225 33.898 7493700 1131900 961560 903720 841060 1379500 2276000 2436 455 2407 10696;10697;10698;10699;10700;10701 7093 7093 1 FQGSGAATETAESR Unmodified 1410.6375 0.63753591 703 O15047;C9J2Z9 SETD1A Histone-lysine N-methyltransferase SETD1A yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 59.183 52.59 2 0.0014291 5 42887 20150910_Q1_SA_NiHu_Masterprac_group15_C 83.692 50.419 7402700 948590 1514300 582720 427340 1464700 2465100 2437 703 2408 10702;10703;10704;10705;10706;10707 7094;7095;7096;7097;7098 7096 5 FQIAQYK Unmodified 896.4756 0.47560295 787 P04183 TK1 Thymidine kinase, cytosolic yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 105.81 96.019 2 0.015516 1 65571 20150910_Q1_SA_NiHu_Masterprac_group15_B 103.29 16.42 17341000 3654800 0 2070800 1086900 1522600 9005500 2438 787 2409 10708;10709;10710;10711;10712 7099 7099 1 FQPASAPAEDCISSSTEPKPDPK Unmodified 2458.1322 0.13221932 1093 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 111.07 101.91 3 0.0034839 3 67251 20150910_Q1_SA_NiHu_Masterprac_group13_B 47.603 28.546 23528000 0 5244500 5980400 4969700 7333400 0 2439 1093 2410 10713;10714;10715;10716 7100;7101;7102 7100 3 FQPPQVPDQAPAEAPTEK Unmodified 1948.9531 0.95305639 462 E9PPY3;O43159 RRP8 Ribosomal RNA-processing protein 8 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 130.69 122.55 2 0.00746 2 82706 20150910_Q1_SA_NiHu_Masterprac_group10_B 44.391 29.511 4144400 1585600 2558800 0 0 0 0 2440 462 2411 10717;10718 7103;7104 7103 2 FQRPGDPQSAQDK Unmodified 1472.7008 0.70080487 1141;674 H7C561;Q15637-6;Q15637-4;Q15637-3;Q15637-2;Q15637 SF1 Splicing factor 1 no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 54.361 48.073 3 0.0021661 7 34287 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.888 44.407 43153000 6073000 6492200 4773900 3073500 7020200 15721000 2441 674;1141 2412 10719;10720;10721;10722;10723;10724;10725 7105;7106;7107;7108;7109;7110;7111 7109 7 FQRPGDPQSAQDKAR Unmodified 1699.839 0.83902969 1141;674 H7C561;Q15637-6;Q15637-4;Q15637-3;Q15637-2;Q15637 SF1 Splicing factor 1 no no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 1 2 52.553 47.12 3;4 0.0022412 5 33441 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.968 47.455 137880000 13567000 29323000 10277000 5626300 20532000 58557000 2442 674;1141 2413 10726;10727;10728;10729;10730;10731;10732;10733;10734;10735;10736 7112;7113;7114;7115;7116 7115 5 FQRQAANLQDCYR Unmodified 1668.7791 0.77907197 162 B4E2Z2;P43246;E9PHA6;E7EU21;B4DL39;B4DSB9;E7EQQ1;E9PCI8 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 84.053 77.317 3 0.019252 1 53151 20150910_Q1_SA_NiHu_Masterprac_group10_B 49.243 30.412 2744000 0 807230 0 0 655770 1281000 2443 162 2414 10737;10738;10739 7117 7117 1 FQSEEQQQTEDELQDK Unmodified 1980.8549 0.85485849 290 CON__P02666 yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 93.578 86.038 2 0.01235 2 63638 20150910_Q1_SA_NiHu_Masterprac_group15_C 44.045 34.766 5807200 0 1298700 1106500 884290 1865500 652230 + 2444 290 2415 10740;10741;10742;10743;10744 7118;7119 7118 2 FQSFQDHKLK Unmodified 1276.6564 0.65642086 1106 Q14331;E9PLY7;Q9BZ01 FRG1;FRG1B Protein FRG1;Protein FRG1B yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 68.531 63.493 3 3.9277E-06 2 44422 20150910_Q1_SA_NiHu_Masterprac_group15_B 112.71 54.081 11215000 0 2366100 3032300 1499800 0 4316500 2445 1106 2416 10745;10746;10747;10748 7120;7121 7120 2 FQVATDALK Unmodified 991.53385 0.53384611 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;Q9BTE9;H0YH75 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 116.2 106.15 2 0.025285 1 75202 20150910_Q1_SA_NiHu_Masterprac_group15_C 66.92 20.948 5581400 0 766520 305960 0 1144100 3364800 2446 1121 2417 10749;10750;10751;10752 7122 7122 1 FQVVINGR Unmodified 931.52395 0.52395013 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 113.36 102.94 2 0.015951 2 70094 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.206 27.53 41763000 3540800 0 4037500 2593200 9325000 22266000 2447 352;968 2418 10753;10754;10755;10756;10757 7123;7124 7124 2 FQYCVAVGAQTFPSVSAPSKK Unmodified 2271.1358 0.13578856 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 133.15 132.85 3 2.7191E-185 2 86263 20150910_Q1_SA_NiHu_Masterprac_group13_B 151.22 127.79 225760000 0 173510000 0 52247000 0 0 2448 352;968 2419 10758;10759 7125;7126 7125 2 FREDHPDLIQNAK Unmodified 1581.79 0.78995423 455 E9PKP7;P17480-2;P17480 UBTF Nucleolar transcription factor 1 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 87.75 79.098 3 1.6925E-131 4 59597 20150910_Q1_SA_NiHu_Masterprac_group15_C 158.34 141.14 30642000 4262800 0 2989300 3171800 10525000 9693300 2449 455 2420 10760;10761;10762;10763;10764 7127;7128;7129;7130 7129 4 FREDHPDLIQNAKK Unmodified 1709.8849 0.88491725 455 E9PKP7;P17480-2;P17480 UBTF Nucleolar transcription factor 1 yes no 0 0 2 By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 1 1 1 1 1 75.115 67.567 4 4.2283E-30 3 52728 20150910_Q1_SA_NiHu_Masterprac_group15_C 117.27 81.466 14676000 3876900 1551400 1155700 1001500 3676700 3413900 2450 455 2421 10765;10766;10767;10768;10769;10770;10771 7131;7132;7133 7132 3 FREIQQELSSGRNEGQLNGETNTPIEGNQAGDAAASAR Unmodified 4014.9016 0.90158954 854 P18583-2;P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-8 SON Protein SON yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 129.87 129.26 4 0.035437 1 82739 20150910_Q1_SA_NiHu_Masterprac_group10_B 16.945 13.245 2326800 0 2326800 0 0 0 0 2451 854 2422 10772 7134 7134 1 FRISNSSTANRVK Unmodified 1478.7954 0.79537396 1059 Q12789-3;Q12789;H7BYG6 GTF3C1 General transcription factor 3C polypeptide 1 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 58.595 54.083 3 0.020044 2 38548 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.294 21.681 13083000 0 1593600 2108400 988300 0 8392700 2452 1059 2423 10773;10774;10775;10776 7135;7136 7136 2 FRLDNTLGGTSEVIHRK Unmodified 1942.0385 0.038457777 1420 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 119.37 116.64 4 0.0047168 1 79367 20150910_Q1_SA_NiHu_Masterprac_group15_B 47 47 2849000 0 263340 0 0 0 2585700 2453 1420 2424 10777;10778 7137 7137 1 FRMLSQDAPTVKESCK Unmodified 1895.9234 0.92335294 736 O60934;F5H3R2 NBN Nibrin yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 103.88 95.08 3 0.0084432 1 70685 20150910_Q1_SA_NiHu_Masterprac_group13_C 55.975 40.217 1532500 0 0 892090 640450 0 0 2454 736 2425 10779;10780 7138 7138 1 FRYLNEQLYSGPSSAAQR Unmodified 2086.0232 0.023201643 462 E9PPY3;O43159 RRP8 Ribosomal RNA-processing protein 8 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 130.88 130.58 3 0.022017 1 83649 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.376 56.197 8327500 0 5539300 0 2788200 0 0 2455 462 2426 10781;10782 7139 7139 0 FSADAARFQIGK Unmodified 1309.6779 0.67788459 1635 Q9Y2R4;F5H5G9;F5H0R7 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 2 1 124.36 112.77 2;3 8.5445E-37 5 77581 20150910_Q1_SA_NiHu_Masterprac_group15_B 128.57 128.57 25540000 2050800 1147000 7701100 1053400 10560000 3027100 2456 1635 2427 10783;10784;10785;10786;10787;10788;10789;10790 7140;7141;7142;7143;7144 7142 4 FSAGGDSDPPLK Unmodified 1189.5615 0.56151742 97 B4DLG2;O75152;E9PQ61;E9PBY7 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 89.19 81.511 2 0.0018067 3 60732 20150910_Q1_SA_NiHu_Masterprac_group15_C 80.318 51.742 20923000 2509100 2177500 1726000 2654500 6341500 5514900 2457 97 2428 10791;10792;10793;10794;10795;10796 7145;7146;7147 7146 3 FSAGGDSDPPLKR Unmodified 1345.6626 0.66262845 97 B4DLG2;O75152;E9PQ61;E9PBY7 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 79.37 68.93 3 0.0048869 1 48828 20150910_Q1_SA_NiHu_Masterprac_group10_C 56.139 34.893 4804600 1344700 0 618630 0 2515300 325980 2458 97 2429 10797;10798;10799;10800 7148 7148 1 FSAPRHGSLGFLPRK Unmodified 1668.9212 0.92124317 905 P39023;H7C422;H7C3M2;F8WCR1 RPL3 60S ribosomal protein L3 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 2 2 2 3 113.12 103.03 3;4 0.0026783 6 73414 20150910_Q1_SA_NiHu_Masterprac_group15_C 70.26 41.448 37618000 2861400 0 3757700 8354500 11625000 11019000 2459 905 2430 10801;10802;10803;10804;10805;10806;10807;10808;10809;10810 7149;7150;7151;7152;7153;7154 7153 6 FSCDTDGEPVPTVTWLRK Unmodified 2107.0044 0.004440036 349 E7ENC6;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8 TTN Titin yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 108.84 91.449 3 0.034191 1 68575 20150910_Q1_SA_NiHu_Masterprac_group13_C 31.111 18.48 989440 0 0 989440 0 0 0 2460 349 2431 10811 7155 7155 1 FSDEYLTK Unmodified 1001.4706 0.47057715 769 O95243-2 MBD4 Methyl-CpG-binding domain protein 4 no no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 101.77 91.913 2 0.019305 1 67099 20150910_Q1_SA_NiHu_Masterprac_group15_C 80.455 47.642 6866400 917920 0 0 0 1900100 4048400 2461 769 2432 10812;10813;10814 7156 7156 1 FSEILETSSTK Unmodified 1240.6187 0.61869795 1237 Q6W2J9;Q6W2J9-4;Q6W2J9-2;H7BYY2;Q6W2J9-3;A1A564 BCOR BCL-6 corepressor yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 103.45 100.29 2 0.02083 1 68426 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.261 36.637 735590 0 0 0 0 0 735590 2462 1237 2433 10815 7157 7157 1 FSENPHVYQR Unmodified 1275.5996 0.59963426 739 O75319 DUSP11 RNA/RNP complex-1-interacting phosphatase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 73.325 65.155 3 0.032268 1 46833 20150910_Q1_SA_NiHu_Masterprac_group10_C 53.756 53.756 712220 712220 0 0 0 0 0 2463 739 2434 10816 7158 7158 1 FSEQGGTPQNVATSSSLTAHLR Unmodified 2287.1193 0.11928687 1483 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 130.42 125.45 3 9.0585E-92 1 85204 20150910_Q1_SA_NiHu_Masterprac_group15_B 126.09 105.73 6639100 0 0 0 0 0 6639100 2464 1483 2435 10817 7159 7159 1 FSGEEGEIEDDESGTENREEK Unmodified 2384.9728 0.97280137 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 86.175 78.756 3 4.0135E-06 4 59290 20150910_Q1_SA_NiHu_Masterprac_group15_C 66.264 58.019 5900300 0 1022400 1598300 809440 1327400 1142700 2465 1639 2436 10818;10819;10820;10821;10822 7160;7161;7162;7163 7162 4 FSGFSAKPNNSGEAPSSPTPK Unmodified 2106.0018 0.0017974991 947 P49916-2;P49916 LIG3 DNA ligase 3 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 97.825 91.568 3 7.0116E-33 5 62362 20150910_Q1_SA_NiHu_Masterprac_group10_C 102.98 86.054 12780000 5055400 1825900 0 1679000 2887300 1333000 2466 947 2437 10823;10824;10825;10826;10827 7164;7165;7166;7167;7168 7168 5 FSGGFGARDYRQSSGASSSSFSSSR Unmodified 2574.1484 0.14835517 693 O00571;O00571-2;B4DLU5 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 2 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 104.96 95.223 4 0.010126 2 64457 20150910_Q1_SA_NiHu_Masterprac_group10_C 35.246 29.574 12201000 1801700 0 2063300 1784000 2929600 3622300 2467 693 2438 10828;10829;10830;10831;10832 7169;7170 7170 2 FSIEDLKAQPK Unmodified 1274.6871 0.68705229 1570 Q9P016;Q9P016-2;E9PPQ6 THYN1 Thymocyte nuclear protein 1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 130.24 119.91 3 3.8345E-05 2 77314 20150910_Q1_SA_NiHu_Masterprac_group10_C 102.06 58.765 9524800 4852400 0 0 0 0 4672400 2468 1570 2439 10833;10834 7171;7172 7172 2 FSKEQLPIFKAQNPDAK Unmodified 1960.0418 0.04181182 1019 Q00059;A8MRB2;H7BYN3 TFAM Transcription factor A, mitochondrial yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 127.61 125.12 4 0.0015403 1 84728 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.936 46.33 5893800 0 0 0 718300 0 5175500 2469 1019 2440 10835;10836 7173 7173 1 FSLDSQVNHR Unmodified 1201.584 0.5839842 1250 Q7Z333-3;Q7Z333;Q7Z333-4 SETX Probable helicase senataxin yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 89.968 80.744 2 0.019099 1 55438 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.374 28.936 3507000 0 0 869480 0 0 2637500 2470 1250 2441 10837;10838 7174 7174 1 FSLVDLAGNERGADTSSADRQTR Unmodified 2465.1895 0.1894917 193 B7Z6Q6;Q99661;Q99661-2;B7Z7M6 KIF2C Kinesin-like protein KIF2C yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 2 132.91 121.26 3;4 1.8481E-08 4 85195 20150910_Q1_SA_NiHu_Masterprac_group13_B 65.416 53.756 573530000 98242000 76379000 331480000 40880000 26555000 0 2471 193 2442 10839;10840;10841;10842;10843;10844 7175;7176;7177;7178 7175 4 FSNSSSSNEFSK Unmodified 1319.563 0.56297399 306 Q5D862;CON__Q5D862 FLG2 Filaggrin-2 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 60.305 54.578 2 2.3148E-18 5 44506 20150910_Q1_SA_NiHu_Masterprac_group13_C 116.63 108.77 8666500 671720 0 4017200 1504200 0 2473400 + 2472 306 2443 10845;10846;10847;10848 7179;7180;7181;7182;7183 7180 5 FSPNGEWLASSSADKLIK Unmodified 1948.9894 0.9894419 983 P61964 WDR5 WD repeat-containing protein 5 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 133.41 115.57 3 0.0055026 1 82408 20150910_Q1_SA_NiHu_Masterprac_group15_C 59.606 38.605 3754000 0 0 0 0 3754000 0 2473 983 2444 10849 7184 7184 0 FSPVATASYR Unmodified 1097.5506 0.55055881 704 O15160-2;O15160 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 107.08 94.965 2 0.022744 2 64836 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.344 43.447 6195000 820900 0 1427700 0 1945600 2000800 2474 704 2445 10850;10851;10852;10853 7185;7186 7185 2 FSQELLSNGELNHLPLKER Unmodified 2223.1648 0.1647805 455 E9PKP7;P17480-2;P17480;E9PLT2 UBTF Nucleolar transcription factor 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 133.16 131.3 4 0.0067715 2 88387 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.539 20.158 81400000 0 21848000 0 10976000 0 48576000 2475 455 2446 10854;10855;10856 7187;7188 7187 2 FSSASGASARINSSSVK Unmodified 1654.8275 0.82746195 1533 Q9NQW6;Q9NQW6-2;H7C167;H7C0Y6 ANLN Actin-binding protein anillin yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 2 1 1 1 1 76.962 68.315 3 0.015114 2 47486 20150910_Q1_SA_NiHu_Masterprac_group13_B 40.983 25.185 7648600 2156400 1588900 2578700 968640 355990 0 2476 1533 2447 10857;10858;10859;10860;10861;10862 7189;7190 7189 2 FSSCGGGGGSFGAGGGFGSR Unmodified 1764.7274 0.72743033 789 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 5 4 4 4 3 4 117.28 108.32 2 9.6357E-05 12 73157 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.148 60.503 69696000 9549200 10180000 13216000 9745100 13194000 13811000 + 2477 789 2448 10863;10864;10865;10866;10867;10868;10869;10870;10871;10872;10873;10874;10875;10876;10877;10878;10879;10880;10881;10882;10883;10884;10885;10886 7191;7192;7193;7194;7195;7196;7197;7198;7199;7200;7201;7202 7195 10 FSSCGGGGGSFGAGGGFGSRSLVNLGGSK Unmodified 2620.2088 0.20884694 789 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 133.14 133.14 3 3.7673E-12 1 86215 20150910_Q1_SA_NiHu_Masterprac_group13_B 59.687 47.016 11379000 0 0 0 11379000 0 0 + 2478 789 2449 10887 7203 7203 1 FSSLQCSSCDK Unmodified 1317.5329 0.53293619 1545 Q9NUA8;F8WAI8 ZBTB40 Zinc finger and BTB domain-containing protein 40 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 63.251 56.29 2 5.9465E-42 5 45467 20150910_Q1_SA_NiHu_Masterprac_group15_C 134.38 78.92 27710000 5674200 3171000 5104000 3726300 5774400 4259800 2479 1545 2450 10888;10889;10890;10891;10892;10893;10894 7204;7205;7206;7207;7208 7207 5 FSSQQAATKQSNASSDVEVEEK Unmodified 2369.0983 0.098276659 741 O75475;O75475-2 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 78.382 70.762 3 1.5182E-111 7 54482 20150910_Q1_SA_NiHu_Masterprac_group15_C 131.56 112.5 58805000 12896000 7268800 19780000 10897000 5278200 2685100 2480 741 2451 10895;10896;10897;10898;10899;10900;10901 7209;7210;7211;7212;7213;7214;7215 7213 7 FSSSGGGGGGGRFSSSSGYGGGSSR Unmodified 2197.9373 0.93729976 899 P35527 KRT9 Keratin, type I cytoskeletal 9 yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 1 2 2 1 2 73.113 66.105 3 2.581E-12 5 45835 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.308 58.556 27369000 3550300 580530 7136200 4932600 6557400 4612100 + 2481 899 2452 10902;10903;10904;10905;10906;10907;10908;10909;10910;10911 7216;7217;7218;7219;7220 7219 5 FSSSSGYGGGSSR Unmodified 1234.5214 0.52144352 899 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 48.12 41.615 2 0.0017006 2 29134 20150910_Q1_SA_NiHu_Masterprac_group13_B 74.133 51.447 3052400 0 464990 1967100 307590 312720 0 + 2482 899 2453 10912;10913;10914;10915 7221;7222 7221 2 FSSSSGYGGGSSRVCGR Unmodified 1706.7431 0.74308039 899 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 63.168 56.49 3 0.002115 3 39482 20150910_Q1_SA_NiHu_Masterprac_group13_B 60.657 48.341 8384300 0 1095200 2263100 1585600 1604000 1836300 + 2483 899 2454 10916;10917;10918;10919;10920 7223;7224;7225 7223 3 FSTPEQAAK Unmodified 977.48181 0.48181054 838 P14866;A6NIT8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 59.19 54.016 2 0.0065883 5 43740 20150910_Q1_SA_NiHu_Masterprac_group15_C 91.265 51.198 11664000 913340 2853600 0 1070200 1883000 4943700 2484 838 2455 10921;10922;10923;10924;10925 7226;7227;7228;7229;7230 7228 5 FSTPEQAAKNR Unmodified 1247.6258 0.62584901 838 P14866;A6NIT8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 51.402 50.348 3 0.016095 1 35957 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.63 26.376 613700 0 0 0 0 0 613700 2485 838 2456 10926 7231 7231 1 FSTRFHC Unmodified 953.41777 0.41777049 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 69.425 66.415 2 0.039234 1 46496 20150910_Q1_SA_NiHu_Masterprac_group10_B 91.9 67.268 0 0 0 0 0 0 0 2486 1611 2457 10927 7232 7232 1 FSTWEPTK Unmodified 994.476 0.47599688 1621 Q9UPT9-2;Q9UPT9 USP22 Ubiquitin carboxyl-terminal hydrolase 22 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 104.77 95.073 2 0.024294 1 65113 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.221 76.221 7207600 532810 0 1538400 242390 1925700 2968300 2487 1621 2458 10928;10929;10930;10931;10932 7233 7233 1 FSVCVLGDQQHCDEAK Unmodified 1891.8193 0.8192818 997 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 123.05 114.81 3 6.6998E-07 3 79372 20150910_Q1_SA_NiHu_Masterprac_group15_C 90.476 69.51 32969000 0 4381400 4811400 1972600 16259000 5544300 2488 997 2459 10933;10934;10935;10936;10937 7234;7235;7236 7235 3 FSVSGEGEGDATYGK Unmodified 1502.6525 0.65251728 310 CON__Q9U6Y5 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 92.333 90.325 2 0.014789 1 61005 20150910_Q1_SA_NiHu_Masterprac_group10_B 44.925 33.88 1265000 0 1265000 0 0 0 0 + 2489 310 2460 10938 7237 7237 1 FTAILYR Unmodified 882.49634 0.49633839 1280 Q8IWC1-2;Q8IWC1;H7BY77;Q8IWC1-3 MAP7D3 MAP7 domain-containing protein 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 127.68 122.72 2 0.025785 1 82912 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.866 59.746 1704100 0 0 0 0 0 1704100 2490 1280 2461 10939 7238 7238 1 FTDADKETEIVK Unmodified 1394.6929 0.69292553 1037 Q03701;F5H3Y6 CEBPZ CCAAT/enhancer-binding protein zeta yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 84.27 76.871 3 0.012719 1 53010 20150910_Q1_SA_NiHu_Masterprac_group10_B 56.936 32.585 3882500 0 599740 985030 382400 651810 1263500 2491 1037 2462 10940;10941;10942;10943;10944 7239 7239 1 FTDLFEK Unmodified 898.44363 0.44363412 429 Q8WUM4;E9PFU1 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 128.8 123.83 2 0.035543 1 83720 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.498 40.103 1633200 0 0 0 0 0 1633200 2492 429 2463 10945 7240 7240 1 FTEYETQVK Unmodified 1143.5448 0.54480473 1073 Q13148;Q13148-2;B1AKP7;G3V162;B4DJ45 TARDBP TAR DNA-binding protein 43 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 83.138 75.432 2 4.9295E-12 7 52392 20150910_Q1_SA_NiHu_Masterprac_group10_B 122.96 76.5 37967000 4189100 5808300 4152300 2165200 5820900 15831000 2493 1073 2464 10946;10947;10948;10949;10950;10951;10952 7241;7242;7243;7244;7245;7246;7247 7245 7 FTIENVTR Unmodified 978.51345 0.51344502 1538 Q9NRX1 PNO1 RNA-binding protein PNO1 yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 113.92 106.37 2 1.1225E-58 3 75382 20150910_Q1_SA_NiHu_Masterprac_group15_C 146.58 80.511 15815000 1339300 2100700 2339100 2438600 0 7597700 2494 1538 2465 10953;10954;10955;10956;10957;10958 7248;7249;7250 7249 3 FTIRGVPQQIEVAR Unmodified 1612.9049 0.90492441 1394 Q96I24 FUBP3 Far upstream element-binding protein 3 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 132.52 129.74 3 3.4461E-20 2 85174 20150910_Q1_SA_NiHu_Masterprac_group10_B 110.55 81.562 51344000 0 16242000 0 0 0 35102000 2495 1394 2466 10959;10960 7251;7252 7252 2 FTKDVSHEIIQHEVK Unmodified 1808.9421 0.94209778 1255 Q7Z6E9;Q7Z6E9-2;Q7Z6E9-4 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 2 2 2 1 1 96.574 88.849 3;4 0.00070671 8 60333 20150910_Q1_SA_NiHu_Masterprac_group13_B 74.789 62.297 16599000 5175500 1964500 2706300 2924600 2245800 1582600 2496 1255 2467 10961;10962;10963;10964;10965;10966;10967;10968;10969;10970 7253;7254;7255;7256;7257;7258;7259;7260 7254 8 FTLAGHTK Unmodified 873.47085 0.47085192 983 P61964 WDR5 WD repeat-containing protein 5 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 62.38 52.73 2 0.022624 2 38057 20150910_Q1_SA_NiHu_Masterprac_group10_B 77.732 34.818 2918700 340220 880750 1581900 0 115770 0 2497 983 2468 10971;10972;10973;10974 7261;7262 7262 2 FTLYENKDSTNPR Unmodified 1583.758 0.7579854 1475 Q9GZS1-2;Q9GZS1;B4DW33 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 93.048 86.797 3 0.026375 1 64260 20150910_Q1_SA_NiHu_Masterprac_group15_C 46.069 22.135 1633100 0 363220 0 476360 793540 0 2498 1475 2469 10975;10976;10977 7263 7263 1 FTLYENKDSTNPRK Unmodified 1711.8529 0.85294842 1475 Q9GZS1-2;Q9GZS1;B4DW33 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 80.132 72.604 3 0.0034559 3 50291 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.36 48.124 9068200 761010 1275100 1045900 909280 1996000 3080800 2499 1475 2470 10978;10979;10980;10981;10982;10983 7264;7265;7266 7265 3 FTPELQPK Unmodified 958.51238 0.51238239 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 93.568 87.532 2 0.0067418 3 64621 20150910_Q1_SA_NiHu_Masterprac_group15_C 106.36 60.228 11746000 1543800 1667400 0 1191300 3404100 3939100 2500 1109 2471 10984;10985;10986;10987;10988 7267;7268;7269 7268 3 FTQTSGETTDADKEPAGEDK Unmodified 2125.9288 0.92875171 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 58.57 52.173 3 0.0031959 4 43039 20150910_Q1_SA_NiHu_Masterprac_group13_C 47.68 42.423 8866100 0 2162600 1566500 832220 1362800 2942000 2501 919;920 2472 10989;10990;10991;10992;10993 7270;7271;7272;7273 7270 4 FTQTSGETTDADKEPAGEDKGIK Unmodified 2424.1292 0.12924244 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 70.468 62.597 3;4 2.6573E-41 9 43600 20150910_Q1_SA_NiHu_Masterprac_group15_B 104.35 104.35 179970000 8383900 47457000 41969000 13809000 29171000 39181000 2502 919;920 2473 10994;10995;10996;10997;10998;10999;11000;11001;11002;11003;11004 7274;7275;7276;7277;7278;7279;7280;7281;7282 7278 9 FTRQGDFESDHSGYVRPVPVPR Unmodified 2545.2462 0.24621872 23 A6NHR9;A6NHR9-2 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 2 2 1 2 118.46 109.73 4;5 5.4228E-05 2 75312 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.975 69.975 76981000 9888300 2581400 19959000 9735600 3809600 31007000 2503 23 2474 11005;11006;11007;11008;11009;11010;11011;11012;11013 7283;7284 7283 2 FTRTSGETTHTHREPAGDGK Unmodified 2184.0308 0.030806217 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 28.908 23.659 4 0.0025377 2 16022 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.51 32.639 34541000 0 0 19339000 0 4242800 10959000 2504 919;920 2475 11014;11015;11016 7285;7286 7286 2 FTVETACK Unmodified 954.44807 0.44806757 1035 Q02880-2;Q02880;E9PCY5 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 72.267 64.923 2 7.4066E-05 5 51856 20150910_Q1_SA_NiHu_Masterprac_group13_C 114.5 65.742 15791000 1328200 3139100 4132900 774770 1248600 5166800 2505 1035 2476 11017;11018;11019;11020;11021;11022 7287;7288;7289;7290;7291 7288 5 FTVETASR Unmodified 909.4556 0.45559579 655 P11388;H7BXX8;P11388-2;P11388-3;P11388-4;C9J5P2;H7BXH5 TOP2A DNA topoisomerase 2-alpha yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 67.087 62.975 2 0.0061452 1 44004 20150910_Q1_SA_NiHu_Masterprac_group15_B 107.29 41.623 5544500 460690 1712200 0 0 0 3371600 2506 655 2477 11023;11024;11025 7292 7292 1 FTVETASREYKK Unmodified 1457.7514 0.75144346 655 P11388;H7BXX8;P11388-2;P11388-3;P11388-4;C9J5P2;H7BXH5 TOP2A DNA topoisomerase 2-alpha yes no 0 0 2 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 72.966 65.572 3 0.0031814 2 45865 20150910_Q1_SA_NiHu_Masterprac_group10_B 92.538 56.539 21393000 1559400 4455300 3675400 1237200 2973800 7491500 2507 655 2478 11026;11027;11028;11029;11030;11031 7293;7294 7294 2 FVAEGGPELEK Unmodified 1174.587 0.58700389 1283 Q8IWZ8 SUGP1 SURP and G-patch domain-containing protein 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 2 1 101.59 92.22 2 0.014934 3 67330 20150910_Q1_SA_NiHu_Masterprac_group15_C 59.198 26.159 17542000 1474500 3222600 1750300 1211000 3625500 6257600 2508 1283 2479 11032;11033;11034;11035;11036;11037;11038 7295;7296;7297 7296 3 FVEQQSYK Unmodified 1027.4975 0.4974606 547 Q99590-2;F8VXG7;Q99590 SCAF11 Protein SCAF11 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 59.573 51.782 2 0.015715 3 37087 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.948 65.276 7845300 962420 1475700 1244000 0 1368800 2794500 2509 547 2480 11039;11040;11041;11042;11043 7298;7299;7300 7299 3 FVGDATRLTDK Unmodified 1221.6354 0.63535107 1085 Q13535-2;Q13535-3;Q13535;H0Y9K2 ATR Serine/threonine-protein kinase ATR yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 88.743 79.57 3 0.016152 2 61420 20150910_Q1_SA_NiHu_Masterprac_group13_C 58.592 14.957 2681100 0 0 1360600 0 0 1320600 2510 1085 2481 11044;11045;11046 7301;7302 7301 2 FVGNIYTLKCR Unmodified 1369.7176 0.71764091 212 B7ZM82;B3KVH1;O95785;O95785-2 WIZ Protein Wiz yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 129.56 113.87 3 0.0045354 1 75204 20150910_Q1_SA_NiHu_Masterprac_group10_C 76.843 42.148 1469300 1469300 0 0 0 0 0 2511 212 2482 11047 7303 7303 1 FVIKRPELLTHSTTEVTQPR Unmodified 2351.2961 0.29612903 90 P78347-2;P78347-4;P78347-3;B4DH52;P78347 GTF2I General transcription factor II-I yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 130.54 125.57 4 0.0025829 1 85336 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.371 29.748 14420000 0 0 0 0 0 14420000 2512 90 2483 11048 7304 7304 1 FVINYDYPNSSEDYVHR Unmodified 2116.949 0.94903365 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 132.91 121.5 3 1.0124E-155 3 88099 20150910_Q1_SA_NiHu_Masterprac_group15_B 153.2 127.95 13931000 0 0 0 0 3577300 10354000 2513 1361;629 2484 11049;11050 7305;7306;7307 7305 3 FVQCPDGELQK Unmodified 1319.618 0.61798644 1627 Q9Y230;B3KQ59 RUVBL2 RuvB-like 2 yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 90.513 81.791 2 0.0021961 4 62611 20150910_Q1_SA_NiHu_Masterprac_group13_C 88.596 62.48 33303000 0 0 3841800 2357700 12906000 14198000 2514 1627 2485 11051;11052;11053;11054 7308;7309;7310;7311 7308 4 FWIQKLPK Unmodified 1058.6277 0.62768692 628 Q6JHV3;H0YMI4;Q9Y6I4;B3KMX7;H0YLB7;H0YKU8;F5H1A6;B4DWJ6 USP3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 131.78 126.82 2 0.020637 1 86672 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.523 52.395 6646200 0 0 0 0 0 6646200 2515 628 2486 11055 7312 7312 1 FYCDYCDTYLTHDSPSVRK Unmodified 2426.0307 0.030731141 811 P09234 SNRPC U1 small nuclear ribonucleoprotein C yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 128.01 121.13 3;4 0.00023615 3 76713 20150910_Q1_SA_NiHu_Masterprac_group10_C 79.393 66.495 23036000 17688000 0 0 2510200 0 2837200 2516 811 2487 11056;11057;11058 7313;7314;7315 7315 3 FYEDYQEK Unmodified 1120.4713 0.47130543 1315 Q8NB90 SPATA5 Spermatogenesis-associated protein 5 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 78.22 69.095 2 0.015759 2 53421 20150910_Q1_SA_NiHu_Masterprac_group15_C 83.783 25.187 3824500 0 590770 310340 0 1049300 1874000 2517 1315 2488 11059;11060;11061;11062 7316;7317 7317 2 FYEEVHDLERK Unmodified 1463.7045 0.70449327 51 E9PNW0;F8VRJ2;E9PJJ2;F5H1X5;E9PS34;E9PNJ7;A8MXH2;F8VVB5;E9PKT8;H0YH88;C9J6D1;H0YHC3;F8W020;F8W118;F8VXI6;F8VUX1;F8VY35;C9JZI7;B3KV44;F8VV59;F8W543;B7Z9C2;B3KNT8;Q99733;F8W0J6;F5H4R6;H0YIV4;F5HFY4;A8MZ22;P55209 NAP1L4;NAP1L1;NAP1L4b Nucleosome assembly protein 1-like 4;Nucleosome assembly protein 1-like 1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 94.881 87.002 3 0.0014174 4 65878 20150910_Q1_SA_NiHu_Masterprac_group13_C 86.014 56.209 8262200 579780 1400800 1421100 660880 1419400 2780100 2518 51 2489 11063;11064;11065;11066;11067;11068 7318;7319;7320;7321 7318 4 FYFYERAK Unmodified 1122.5498 0.54983053 1287 Q8IXB1;Q8IXB1-2;F8W884 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 110.26 97.581 2 0.037817 1 65716 20150910_Q1_SA_NiHu_Masterprac_group10_C 88.177 54.799 1619600 1619600 0 0 0 0 0 2519 1287 2490 11069 7322 7322 1 FYGELALKK Unmodified 1067.6015 0.60153174 1012 P78527;E7EUY0;P78527-2;F5GX40 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 110.28 102.66 2 2.1447E-11 1 70152 20150910_Q1_SA_NiHu_Masterprac_group15_B 123.21 74.452 7334100 0 370690 431960 0 0 6531400 2520 1012 2491 11070;11071;11072 7323 7323 1 FYGYDNVK Unmodified 1004.4603 0.46034682 280 C9K0Y1;Q96GN5-4;Q96GN5-2;Q96GN5 CDCA7L Cell division cycle-associated 7-like protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 102.46 90.841 2 0.0074467 1 62023 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.635 44.919 17401000 300380 0 3738400 0 590570 12772000 2521 280 2492 11073;11074;11075;11076 7324 7324 1 FYQASTSELYGK Unmodified 1392.6561 0.65614609 444 E9PI88;O60547 GMDS GDP-mannose 4,6 dehydratase yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 117.04 107.71 2 0.00065502 6 75990 20150910_Q1_SA_NiHu_Masterprac_group15_C 93.766 58.997 8602700 942490 1495500 0 0 2089700 4075000 2522 444 2493 11077;11078;11079;11080 7325;7326;7327;7328;7329;7330 7327 6 FYWQHCETSSLEEVK Unmodified 1941.8567 0.85671317 1665 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 2 1 132.06 131.66 2 0.0026064 1 85164 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.885 21.708 92799000 0 90543000 0 2256000 0 0 + 2523 1665 2494 11081;11082;11083 7331 7331 1 GAADVEKVEEK Unmodified 1173.5877 0.58773217 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 49.346 42.929 2 0.00016048 2 34886 20150910_Q1_SA_NiHu_Masterprac_group13_C 100.93 47.807 1072700 0 0 662930 0 0 409790 2524 486 2495 11084;11085 7332;7333 7332 2 GAAEGSGGDGEGPPGEAGAEK Unmodified 1798.7606 0.76056417 360 E7EQ07;P31277 HOXD11 Homeobox protein Hox-D11 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 52.033 46.176 2 0.020361 2 32247 20150910_Q1_SA_NiHu_Masterprac_group13_B 35.875 29.67 5511900 0 1240300 796100 478950 664790 2331800 2525 360 2496 11086;11087;11088;11089;11090 7334;7335 7334 2 GAAPPPPPVPR Unmodified 1054.5924 0.59236404 1045 Q07666;Q07666-3;Q07666-2;E7ET98 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 84.253 81.944 2 0.025855 1 55758 20150910_Q1_SA_NiHu_Masterprac_group10_B 52.725 35.486 1077900 0 1077900 0 0 0 0 2526 1045 2497 11091 7336 7336 1 GAAVNGPVSHSSLTK Unmodified 1423.7419 0.7419414 1492 Q9H582-2;Q9H582;F5H7T9 ZNF644 Zinc finger protein 644 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 65.738 60.235 2;3 7.8168E-14 6 42282 20150910_Q1_SA_NiHu_Masterprac_group15_B 105.58 59.691 24657000 623690 5097900 4717000 1826000 4296800 8095500 2527 1492 2498 11092;11093;11094;11095;11096;11097;11098;11099 7337;7338;7339;7340;7341;7342 7340 5 GACLLPKIETMR Unmodified 1387.7316 0.73157641 294 CON__P02769 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 2 131.99 131.39 2;3 0.0090035 2 84871 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.815 24.968 11644000 0 11644000 0 0 0 0 + 2528 294 2499 11100;11101 7343;7344 7344 2 GACLLPKIETMREK Unmodified 1644.8691 0.86913253 294 CON__P02769 yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By matching By MS/MS 2 1 2 2 123.08 118.98 3;4 0.00017381 5 77179 20150910_Q1_SA_NiHu_Masterprac_group13_B 76.073 42.285 17433000 0 1791000 3097800 5905700 0 6638800 + 2529 294 2500 11102;11103;11104;11105;11106;11107;11108 7345;7346;7347;7348;7349 7346 4 GACLLPKIETMREK Oxidation (M) 1660.864 0.86404715 294 CON__P02769 yes yes 0 1 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 105.55 99.086 3 0.031299 1 65608 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.419 43.082 3015200 0 1434300 825420 755480 0 0 + 2530 294 2500 11109;11110;11111 7350 7350 24 1 GADSELSTVPSVTK Unmodified 1389.6987 0.69873919 923 P46087;Q3KQS4;P46087-2 NOP2 Putative ribosomal RNA methyltransferase NOP2 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 109.63 102.45 2 0.0016293 2 69813 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.168 34.2 11312000 2494100 1493800 0 267470 5071200 1985700 2531 923 2501 11112;11113;11114;11115;11116 7351;7352 7351 2 GADTSSADRQTRLEGAEINK Unmodified 2118.0301 0.030137515 403;686 O00139-1;E9PB70;O00139;O00139-4;O00139-2 KIF2A Kinesin-like protein KIF2A no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 72.392 65.398 3 0.03355 1 45401 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.798 23.234 2980800 649260 442460 0 0 810800 1078300 2532 403;686 2502 11117;11118;11119;11120 7353 7353 1 GAEAANVTGPGGVPVQGSK Unmodified 1694.8588 0.85876208 380 E7ETA0;P67809;H0Y449 YBX1 Nuclease-sensitive element-binding protein 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 93.566 86.696 2 0.013404 1 64005 20150910_Q1_SA_NiHu_Masterprac_group15_C 39.905 23.179 5358700 0 909350 0 0 2633300 1816000 2533 380 2503 11121;11122;11123 7354 7354 1 GAFSSVSMSGGAGR Unmodified 1269.5772 0.57718426 300 F8VS64;P19013;CON__P19013;F5H8K9;F8VX05;F8VZR6 KRT4 Keratin, type II cytoskeletal 4 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 109.06 92.119 2 0.011818 1 67271 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.62 15.519 1620700 0 0 0 0 1620700 0 + 2534 300 2504 11124 7355 7355 1 GAGIEIYPGSQCTLSDNGIHHCK Unmodified 2513.1427 0.14274121 1323 Q8NEM2 SHCBP1 SHC SH2 domain-binding protein 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 126.97 122 4 0.00034569 2 82734 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.337 46.722 1760000 0 0 0 0 0 1760000 2535 1323 2505 11125 7356;7357 7357 2 GAGLGFSTAPNK Unmodified 1118.572 0.57202253 1157 Q1ED39;H3BNU8 KNOP1 Lysine-rich nucleolar protein 1 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 96.973 88.994 2 0.0030011 3 60965 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.29 45.319 19402000 2015300 1915200 2331800 2028400 5521900 5589900 2536 1157 2506 11126;11127;11128;11129;11130;11131 7358;7359;7360 7359 3 GALMLENLQK Unmodified 1115.6009 0.60087982 364 E7EQT4;Q9UKV3;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 132.1 127.14 2 0.0087327 1 87022 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.489 31.518 9147300 0 0 0 0 0 9147300 2537 364 2507 11132 7361 7361 1 GALQNIIPASTGAAK Unmodified 1410.7831 0.78307794 791 P04406;E7EUT5;E7EUT4 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 132.74 114.82 2 0.0005823 1 81711 20150910_Q1_SA_NiHu_Masterprac_group15_C 73.386 32.89 4393300 0 0 2308200 0 2085100 0 2538 791 2508 11133;11134 7362 7362 1 GALRGYVCAIKVEK Unmodified 1562.8603 0.8602824 1049 Q08AF3;Q08AF3-2;B4E128 SLFN5 Schlafen family member 5 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 118.66 104.27 3 0.018932 1 69899 20150910_Q1_SA_NiHu_Masterprac_group10_C 54.898 29.933 1438900 1438900 0 0 0 0 0 2539 1049 2509 11135 7363 7363 1 GALYCELCYEK Unmodified 1404.6054 0.60537285 405 H0Y8Y3;F5H7Y0;E9PBF5;Q96HC4-4;Q96HC4;D6RB78 PDLIM5 PDZ and LIM domain protein 5 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 129.17 128.56 2 0.021563 1 82240 20150910_Q1_SA_NiHu_Masterprac_group10_B 54.772 40.326 2279200 0 2279200 0 0 0 0 2540 405 2510 11136 7364 7364 1 GANRTETVTSFRK Unmodified 1465.7637 0.76373948 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 54.538 48.222 3 0.0053811 5 39831 20150910_Q1_SA_NiHu_Masterprac_group15_C 81.185 64.713 124070000 10045000 14498000 10397000 9307000 31438000 48383000 2541 1012 2511 11137;11138;11139;11140;11141;11142;11143 7365;7366;7367;7368;7369 7367 5 GAPAAATAPAPTAHKAK Unmodified 1529.8314 0.83142511 1350 Q92522 H1FX Histone H1x yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 40.803 35.889 3 0.0039058 1 25170 20150910_Q1_SA_NiHu_Masterprac_group10_B 49.595 39.241 2395600 575510 363570 0 0 906030 550490 2542 1350 2512 11144;11145;11146;11147 7370 7370 1 GAPATPHLADAPK Unmodified 1244.6513 0.65133548 1434 Q99958 FOXC2 Forkhead box protein C2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 80.782 73.237 2;3 1.5228E-47 9 57555 20150910_Q1_SA_NiHu_Masterprac_group13_C 130.56 82.859 10486000 1464700 1767600 2152800 681180 2156800 2262700 2543 1434 2513 11148;11149;11150;11151;11152;11153;11154 7371;7372;7373;7374;7375;7376;7377;7378;7379 7373 9 GAPATPHLADAPKEAEK Unmodified 1701.8686 0.86859848 1434 Q99958 FOXC2 Forkhead box protein C2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 1 81.179 72.562 3;4 0.00076571 8 50409 20150910_Q1_SA_NiHu_Masterprac_group10_B 72.662 59.923 34023000 10151000 2310700 6267200 7028400 5430400 2835900 2544 1434 2514 11155;11156;11157;11158;11159;11160;11161;11162;11163;11164 7380;7381;7382;7383;7384;7385;7386;7387 7384 8 GAPLAQELCSESKPPGYTGPVTR Unmodified 2414.19 0.19000897 675 H9KV46;Q86Y91 KIF18B Kinesin-like protein KIF18B yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.33 130.72 3 2.4026E-08 1 84158 20150910_Q1_SA_NiHu_Masterprac_group10_B 72.864 55.3 6580700 0 6580700 0 0 0 0 2545 675 2515 11165 7388 7388 1 GAQQIHSIRQHSSTGPPPLLLAPR Unmodified 2560.3986 0.39863704 170 Q86YP4;B5MC40;Q86YP4-2;B4DKZ7 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 125.64 120.78 4 0.029653 1 81940 20150910_Q1_SA_NiHu_Masterprac_group15_B 32.227 24.043 3363400 0 0 0 0 0 3363400 2546 170 2516 11166 7389 7389 1 GASEISDSCKPLKK Unmodified 1518.7712 0.77119262 210 Q9BZ95-4;C9JY66;Q9BZ95-2;B7ZL11;Q9BZ95 WHSC1L1 Histone-lysine N-methyltransferase NSD3 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 50.709 44.835 3 0.02161 1 32202 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.448 6.7181 8072800 737940 1446600 1702000 914400 859620 2412300 2547 210 2517 11167;11168;11169;11170;11171;11172 7390 7390 1 GASFVTSTNPRK Unmodified 1263.6571 0.65714914 947 P49916-2;P49916 LIG3 DNA ligase 3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 57.718 54.81 3 0.025874 1 38920 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.48 17.226 1524000 526510 0 0 371660 0 625850 2548 947 2518 11173;11174;11175 7391 7391 1 GASGSFVVVQK Unmodified 1077.5819 0.58185894 1186 Q5SSJ5;Q5SWC8;Q5SSJ5-3;Q5SSJ5-2 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 96.108 86.784 2 0.016471 1 64150 20150910_Q1_SA_NiHu_Masterprac_group15_C 58.172 13.15 4729000 877010 0 0 0 2815800 1036200 2549 1186 2519 11176;11177;11178 7392 7392 1 GASSPYGAPGTPR Unmodified 1216.5836 0.58364985 1201 Q5UIP0-2;Q5UIP0;H7BZN3 RIF1 Telomere-associated protein RIF1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 71.34 64.589 2 0.0022782 1 45060 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.295 35.751 4753600 0 886910 416010 0 0 3450600 2550 1201 2520 11179;11180;11181 7393 7393 1 GATGEPEVMEPALEGTGK Unmodified 1771.8298 0.82982971 1497 Q9H6R4-4;Q9H6R4;Q9H6R4-2;G8JLK7;Q9H6R4-3 NOL6 Nucleolar protein 6 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 129.78 118.38 2 0.00049115 3 84054 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.606 70 23297000 6550600 1766200 6596400 0 1988400 6395900 2551 1497 2521 11182;11183;11184;11185;11186 7394;7395;7396 7394 3 GATSAEPGSSNHTNMGNLAVLSQGNTSSSR Unmodified 2931.3377 0.33768886 19 A6NF48;Q9Y2X9;F5H1Z5 ZNF281 Zinc finger protein 281 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 122.75 117.99 3 0.0026184 1 80279 20150910_Q1_SA_NiHu_Masterprac_group15_B 33.776 28.63 929790 0 0 0 0 0 929790 2552 19 2522 11187 7397 7397 1 GATYGKPVHHGVNQLK Unmodified 1704.906 0.90598704 365 E7EX53;Q642I1;E7EQV9;P61313;E7ENU7 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 2 2 48.999 43.162 3;4 0.00013652 3 30544 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.738 73.32 6741000 0 2248700 0 0 1386900 3105400 2553 365 2523 11188;11189;11190;11191;11192 7398;7399;7400 7398 3 GAVAIADAIRGGLPK Unmodified 1407.8198 0.8197978 921 P46060;F8W7I9;H0Y4Q3 RANGAP1 Ran GTPase-activating protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 133.32 132.71 3 0.00070259 1 86355 20150910_Q1_SA_NiHu_Masterprac_group10_B 80.371 47.054 5061400 0 5061400 0 0 0 0 2554 921 2524 11193 7401 7401 1 GAVEAELDPVEYTLRK Unmodified 1788.9258 0.92577901 273 C9JYM0;O75817 POP7 Ribonuclease P protein subunit p20 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 133.59 128.62 2 6.6057E-09 1 88693 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.657 61.585 0 0 0 0 0 0 0 2555 273 2525 11194 7402 7402 1 GAVEDVISRNEIQGR Unmodified 1641.8434 0.84344636 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 119.57 110.75 3 0.0046666 2 72392 20150910_Q1_SA_NiHu_Masterprac_group10_B 53.869 33.43 6281900 359360 2081200 2663400 1177900 0 0 2556 578 2526 11195;11196;11197;11198 7403;7404 7404 2 GAVIVVSHDAR Unmodified 1122.6146 0.61455605 1321;411 E9PC67;F8VQZ0;Q8NE71;Q8NE71-2;H0YGW7;Q5STZ7 ABCF1 ATP-binding cassette sub-family F member 1 no no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 74.829 59.588 2 0.0057989 2 47508 20150910_Q1_SA_NiHu_Masterprac_group15_C 71.03 47.677 527470 0 0 0 0 527470 0 2557 411;1321 2527 11199;11200 7405;7406 7405 2 GAVLAQGQGDGTVSK Unmodified 1386.7103 0.71030693 553 F8W689;P48382;B7Z848 RFX5 DNA-binding protein RFX5 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 65.259 58.361 2 0.00066963 4 41547 20150910_Q1_SA_NiHu_Masterprac_group10_B 80.746 56.051 6024100 0 981930 1051300 639830 1265200 2085800 2558 553 2528 11201;11202;11203;11204;11205 7407;7408;7409;7410 7410 4 GAVQTGVDTAK Unmodified 1045.5404 0.54038805 1413 Q96Q06-2;Q96Q06 PLIN4 Perilipin-4 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 46.161 40.771 2 4.1671E-08 5 28995 20150910_Q1_SA_NiHu_Masterprac_group10_B 110.93 53.758 39814000 3592300 7984500 15344000 2053600 2362100 8478300 2559 1413 2529 11206;11207;11208;11209;11210;11211 7411;7412;7413;7414;7415 7414 5 GAVTDDEVIRK Acetyl (Protein N-term) 1243.6408 0.64083038 1221 Q6I9Y2 THOC7 THO complex subunit 7 homolog yes yes 1 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 95.087 87.142 2 0.00010273 3 59166 20150910_Q1_SA_NiHu_Masterprac_group13_B 100.69 44.707 26798000 2660400 3192600 4312100 3553400 6837900 6241600 2560 1221 2530 11212;11213;11214;11215;11216;11217 7416;7417;7418 7416 3 GAVVPPVHDIYR Unmodified 1321.7143 0.71427009 1067 Q12996;H0YE74;F5H0G6 CSTF3 Cleavage stimulation factor subunit 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 115.88 111.52 3 0.038221 1 76148 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.172 10.87 0 0 0 0 0 0 0 2561 1067 2531 11218 7419 7419 1 GAWSNVLR Unmodified 901.477 0.47699993 795;826 P12236;P12235;P05141 SLC25A6;SLC25A4;SLC25A5 ADP/ATP translocase 3;ADP/ATP translocase 1;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed no no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 130.1 113.39 2 0.01958 2 79582 20150910_Q1_SA_NiHu_Masterprac_group15_C 80.229 41.267 4018500 2045300 0 0 0 1973200 0 2562 826;795 2532 11219;11220 7420;7421 7420 2 GCAQRAADAAGPGCPR Unmodified 1613.7151 0.7150915 1318 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 46.126 40.811 3 0.0022477 1 28993 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.973 47.619 1795700 304690 502570 0 0 398090 590390 2563 1318 2533 11221;11222;11223;11224 7422 7422 1 GCCFVTFYTRK Unmodified 1437.6533 0.65332609 560 Q92879-2;Q92879-3;F8W940;Q92879;Q92879-4;G5EA30;E9PQK4;E9PSH0;E9PKU1;F5H4Y5;F5H0D8;O95319-5;O95319-2;Q5VZZ6;O95319;O95319-4;O95319-3;E9PC62 CELF1;CELF2 CUGBP Elav-like family member 1;CUGBP Elav-like family member 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 126.38 123.9 3 0.0077284 1 84013 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.198 37.123 4456100 0 0 0 1051100 0 3405000 2564 560 2534 11225;11226 7423 7423 1 GCPVNTEPSGPTCEK Unmodified 1631.692 0.69195602 963 P53701 HCCS Cytochrome c-type heme lyase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 66.782 59.638 2 0.0025899 2 43896 20150910_Q1_SA_NiHu_Masterprac_group10_C 62.357 53.355 7321200 907960 1141600 1146200 798610 1864100 1462800 2565 963 2535 11227;11228;11229;11230;11231;11232 7424;7425 7425 2 GCPVNTEPSGPTCEKK Unmodified 1759.7869 0.78691904 963 P53701 HCCS Cytochrome c-type heme lyase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 55.139 48.897 3 0.001007 1 40241 20150910_Q1_SA_NiHu_Masterprac_group15_C 59.709 45.537 5070300 460230 438770 548070 481290 1394300 1747600 2566 963 2536 11233;11234;11235;11236;11237;11238 7426 7426 1 GCQAEADRAEVSRFAK Unmodified 1793.8479 0.84787981 414 Q5JTH9-2;E9PCK7;Q5JTH9;F5H456 RRP12 RRP12-like protein yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 84.794 77.216 3 0.010518 1 53359 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.377 32.027 10953000 903410 911860 1289100 1166600 3170400 3512000 2567 414 2537 11239;11240;11241;11242;11243;11244 7427 7427 1 GCTATLGNFAK Unmodified 1138.5441 0.54409322 839 P15880;H0YEN5;E9PQD7 RPS2 40S ribosomal protein S2 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 102.97 94.672 2 0.030492 2 63511 20150910_Q1_SA_NiHu_Masterprac_group10_B 51.286 28.757 26253000 2002600 2418200 1501300 1646800 7969300 10714000 2568 839 2538 11245;11246;11247;11248;11249;11250 7428;7429 7429 1 GCTIVKPFNLSQGK Unmodified 1547.813 0.81299786 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 1 1 2 123.95 115.87 2;3 6.2854E-124 6 80164 20150910_Q1_SA_NiHu_Masterprac_group15_B 150.49 134.26 65534000 0 13453000 26004000 5978200 1117400 18982000 2569 1611 2539 11251;11252;11253;11254;11255;11256;11257;11258 7430;7431;7432;7433;7434;7435 7433 6 GCTIVKPFNLSQGKK Unmodified 1675.908 0.90796088 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 107.75 99.002 3;4 6.4672E-104 10 67569 20150910_Q1_SA_NiHu_Masterprac_group15_B 143.58 121.19 170970000 16215000 26166000 24499000 11553000 28542000 64000000 2570 1611 2540 11259;11260;11261;11262;11263;11264;11265;11266;11267;11268;11269;11270 7436;7437;7438;7439;7440;7441;7442;7443;7444;7445 7440 10 GDEVDGVDEVAK Unmodified 1231.5568 0.55682598 815 P09874;F8WC10 PARP1 Poly [ADP-ribose] polymerase 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 84.201 76.623 2 0.0040679 2 53053 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.023 45.189 5766800 515500 941380 963650 802290 1426400 1117600 2571 815 2541 11271;11272;11273;11274;11275;11276 7446;7447 7447 2 GDHEEFNQCQTQLK Unmodified 1732.7475 0.74749707 362 Q96PV6;Q96PV6-2;F8W9Q9;E7EQP8 LENG8 Leukocyte receptor cluster member 8 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 75.674 68.213 3 8.2985E-08 3 47463 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.273 88.271 10629000 635270 1597000 1364800 747870 2201400 4082800 2572 362 2542 11277;11278;11279;11280;11281;11282 7448;7449;7450 7448 3 GDIVDIKGMGTVQK Unmodified 1459.7705 0.77046434 574 G3V1B3;P46778 RPL21 60S ribosomal protein L21 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 130.34 114.65 3 0.024058 1 75878 20150910_Q1_SA_NiHu_Masterprac_group10_C 43.761 20.749 2601000 2601000 0 0 0 0 0 2573 574 2543 11283 7451 7451 1 GDLPREPLVATNLPGRGQLQK Unmodified 2258.2495 0.24951318 913 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 3 1 131.58 121.68 3;4 0 10 83708 20150910_Q1_SA_NiHu_Masterprac_group10_B 189.56 173.2 1363100000 148670000 654000000 82163000 348940000 28205000 101130000 2574 913 2544 11284;11285;11286;11287;11288;11289;11290;11291;11292;11293;11294 7452;7453;7454;7455;7456;7457;7458;7459;7460;7461 7458 10 GDRQRFYSDSHHLK Unmodified 1744.8394 0.83936404 1353 Q92576-2;Q92576 PHF3 PHD finger protein 3 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 48.435 42.243 4 0.017654 1 34803 20150910_Q1_SA_NiHu_Masterprac_group13_C 45.357 29.971 8458900 0 0 2034200 1600000 1229600 3595100 2575 1353 2545 11295;11296;11297;11298 7462 7462 1 GDSIQNEKNPNPIESLEK Unmodified 2010.9858 0.98581308 426 E9PFZ0;P38398-4;P38398-2;P38398;E9PFC7;E7EP70;F8W8H7;E7EMP0;E9PH68;E7EWN5 BRCA1 Breast cancer type 1 susceptibility protein yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 123.08 113.61 3 0.0034301 2 75690 20150910_Q1_SA_NiHu_Masterprac_group10_C 49.924 20.825 15527000 4695900 2044400 4720900 742280 563690 2760000 2576 426 2546 11299;11300;11301;11302;11303;11304 7463;7464 7464 2 GDSLSLKGETVNDCHAEIISR Unmodified 2300.1067 0.10667328 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 2 123.02 114.68 3;4 0.014282 2 78281 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.996 33.024 9888700 3578700 0 0 0 0 6310000 2577 352;968 2547 11305;11306;11307 7465;7466 7465 2 GDSNANSDVCAAALR Unmodified 1519.6685 0.66851847 242 E7EV54;Q8IZL8;I3L3A8;C9JFV4;Q8IZL8-2 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 94.805 78.562 2 0.018838 1 59135 20150910_Q1_SA_NiHu_Masterprac_group15_C 64.52 49.148 0 0 0 0 0 0 0 2578 242 2548 11308 7467 7467 1 GDSNANSDVCAAALRGLSR Unmodified 1932.9072 0.90718561 242 E7EV54;Q8IZL8;I3L3A8;C9JFV4;Q8IZL8-2 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 123.67 120.94 3 0.0050877 1 77561 20150910_Q1_SA_NiHu_Masterprac_group10_B 46.249 18.994 5479600 0 2028600 0 0 0 3451000 2579 242 2549 11309;11310 7468 7468 1 GEAAAERPGEAAVASSPSK Unmodified 1783.8701 0.87005504 886 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 61.951 55.717 3 0.015117 1 39265 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.364 18.84 3796300 0 955360 0 0 642250 2198700 2580 886 2550 11311;11312;11313 7469 7469 1 GEAGNSDSMCLR Unmodified 1295.5234 0.52343413 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 69.628 60.975 2 2.9068E-18 6 47973 20150910_Q1_SA_NiHu_Masterprac_group15_C 116.03 108.98 24453000 1542000 3256000 3925800 0 4731500 10998000 2581 919;920 2551 11314;11315;11316;11317;11318 7470;7471;7472;7473;7474;7475 7473 6 GEALYGYCNLKDK Unmodified 1529.7184 0.71842877 1390 Q96H79 ZC3HAV1L Zinc finger CCCH-type antiviral protein 1-like yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 97.944 96.136 3 0.0043885 1 64430 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.338 33.035 1280500 0 1280500 0 0 0 0 2582 1390 2552 11319 7476 7476 1 GEANGCPGLEPLRQK Unmodified 1624.7991 0.79913871 817 P0CW18 PRSS56 Serine protease 56 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 87.782 81.599 3 0.00077679 1 56057 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.01 52.612 2619100 0 0 553680 299280 0 1766200 2583 817 2553 11320;11321;11322 7477 7477 1 GEATVSFDDPPSAK Unmodified 1419.6518 0.65178899 120 F5GWQ7;B4DR70;P35637-2;P35637;H3BPE7;Q92804-2;Q92804 FUS;TAF15 RNA-binding protein FUS;TATA-binding protein-associated factor 2N yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 106.99 96.462 2 0.0026818 4 65065 20150910_Q1_SA_NiHu_Masterprac_group10_C 62.68 49.672 5092900 1655500 0 0 0 1422600 2014800 2584 120 2554 11323;11324;11325;11326 7478;7479;7480;7481 7481 4 GEAVCPTCNVVTRK Unmodified 1589.7654 0.76539574 1402 Q96KM6 ZNF512B Zinc finger protein 512B yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 2 1 1 1 2 73.363 67.977 3 0.00083377 2 47404 20150910_Q1_SA_NiHu_Masterprac_group10_B 68.277 36.93 12325000 1789000 2015800 0 881230 2000900 5638300 2585 1402 2555 11327;11328;11329;11330;11331;11332;11333 7482;7483 7482 2 GEAVLRPGLDAEPELSPEEQR Unmodified 2291.1394 0.13935361 266 C9JQV0;Q9BRJ6 C7orf50 Uncharacterized protein C7orf50 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.49 130.89 3 0.034242 1 84307 20150910_Q1_SA_NiHu_Masterprac_group10_B 45.069 16.714 2627800 0 2627800 0 0 0 0 2586 266 2556 11334 7484 7484 0 GEEGHDPKEPEQLRK Unmodified 1747.8489 0.84892567 955 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 43.309 38.103 4 0.003718 1 32120 20150910_Q1_SA_NiHu_Masterprac_group15_C 54.951 37.247 12970000 1538100 1599300 1730300 1329800 2770000 4002800 2587 955 2557 11335;11336;11337;11338;11339;11340 7485 7485 1 GEFGGFGSVSGK Unmodified 1127.5247 0.52473799 1051 Q09028-3;Q09028;Q09028-2;Q09028-4;C9JPP3 RBBP4 Histone-binding protein RBBP4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 111.52 108.88 2 0.0018256 3 71481 20150910_Q1_SA_NiHu_Masterprac_group10_B 82.774 54.078 37013000 0 12148000 0 0 0 24865000 2588 1051 2558 11341;11342 7486;7487;7488 7487 3 GEFGGFGSVTGK Unmodified 1141.5404 0.54038805 1153 Q16576;Q16576-2;Q5JP01 RBBP7 Histone-binding protein RBBP7 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 121.55 118.87 2 0.013255 2 76552 20150910_Q1_SA_NiHu_Masterprac_group10_B 56.295 40.962 23998000 0 9314600 0 0 0 14683000 2589 1153 2559 11343;11344 7489;7490 7489 2 GEFSASPMLK Unmodified 1065.5165 0.51648149 1623 Q9UQ35;F5GWZ7;Q9UQ35-2;I3L2L6 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 117.06 109.94 2 0.0027701 2 75372 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.597 78.493 6514900 967680 1500900 0 0 0 4046300 2590 1623 2560 11345;11346;11347 7491;7492 7492 2 GEGIRTPLEK Unmodified 1098.6033 0.60332266 430 Q12873;E9PG89;Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 79.113 71.602 2 0.0012137 2 49787 20150910_Q1_SA_NiHu_Masterprac_group10_B 106.16 41.317 16607000 386780 5142100 3666200 226260 769950 6416100 2591 430 2561 11348;11349;11350;11351;11352;11353 7493;7494 7494 2 GEGLVGDGPVDMR Unmodified 1300.6082 0.60815004 170 Q86YP4;B5MC40;Q86YP4-2;C9JHD7;C9JJK9;C9JVY3;C9JMI3;C9JGN4 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 120.27 115.61 2 0.0022315 1 78831 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.68 47.211 3586900 0 0 0 0 0 3586900 2592 170 2562 11354 7495 7495 1 GEGVSTVGYR Unmodified 1023.4985 0.49852324 1571 Q9P031;F8VNY5 CCDC59 Thyroid transcription factor 1-associated protein 26 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 70.629 62.281 2 0.034866 1 43779 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.353 5.2451 1986600 0 0 0 0 1160300 826340 2593 1571 2563 11355;11356 7496 7496 1 GEGVSTVGYRNK Unmodified 1265.6364 0.6364137 1571 Q9P031;F8VNY5 CCDC59 Thyroid transcription factor 1-associated protein 26 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 52.146 46.582 3 0.0022829 3 34679 20150910_Q1_SA_NiHu_Masterprac_group10_C 75.416 51.064 2013200 519650 331300 664110 498150 0 0 2594 1571 2564 11357;11358;11359;11360 7497;7498;7499 7499 3 GEITPAAIQK Unmodified 1026.571 0.5709599 1140 Q15532-2;Q15532 SS18 Protein SSXT yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 80.722 78.739 2 0.015276 1 54255 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.704 27.352 2586300 0 682320 0 0 0 1904000 2595 1140 2565 11361;11362 7500 7500 1 GEPAAAAAPEAGASPVEK Unmodified 1621.7948 0.79476484 886 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 80.709 79.388 2 0.0015726 2 54523 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.635 41.972 3253300 0 747550 0 543070 0 1962700 2596 886 2566 11363;11364;11365 7501;7502 7502 1 GERLNQDQLDAVSK Unmodified 1571.7903 0.79034816 459 E9PP31;E9PLA9;G3V153;Q14444-2;Q14444 CAPRIN1 Caprin-1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 88.146 78.67 3 0.0032244 1 53943 20150910_Q1_SA_NiHu_Masterprac_group10_B 60.489 39.429 1895100 0 1311400 0 0 583730 0 2597 459 2567 11366;11367 7503 7503 1 GESLGIKHEEAPGHRPTTNPNASK Unmodified 2526.2575 0.25751169 859 P21291;E9PND2;E9PS42;E9PP21 CSRP1 Cysteine and glycine-rich protein 1 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 60.611 53.043 4 0.038403 1 39305 20150910_Q1_SA_NiHu_Masterprac_group10_C 29.447 18.246 1049900 1049900 0 0 0 0 0 2598 859 2568 11368 7504 7504 1 GETQGLLTAK Unmodified 1016.5502 0.55022446 1284 Q8IX01-4;Q8IX01-3;Q8IX01 SUGP2 SURP and G-patch domain-containing protein 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 73.717 72.462 2 0.020366 1 50300 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.32 21.13 775080 0 0 0 0 0 775080 2599 1284 2569 11369 7505 7505 1 GETVNDCHAEIISR Unmodified 1599.7311 0.73111872 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 81.978 74.598 3 1.7498E-30 1 51599 20150910_Q1_SA_NiHu_Masterprac_group15_B 118.24 98.969 8025900 0 795220 793990 858520 1901000 3677200 2600 352;968 2570 11370;11371;11372;11373;11374 7506 7506 1 GETVNDCHAEIISRR Unmodified 1755.8322 0.83222975 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 67.819 66.664 3 0.020883 1 46425 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.793 22.406 884520 0 0 0 0 0 884520 2601 352;968 2571 11375 7507 7507 1 GEYHRAPVAIK Unmodified 1239.6724 0.67240528 1314 Q8NB16;I3L4A6 MLKL Mixed lineage kinase domain-like protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 56.791 49.22 3 0.014348 1 35182 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.064 24.4 2037300 0 443950 378160 0 235570 979650 2602 1314 2572 11376;11377;11378;11379 7508 7508 1 GFCQDESIYK Unmodified 1245.5336 0.53358811 1351 Q92547;H0Y8I7;I3L1F2 TOPBP1 DNA topoisomerase 2-binding protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 100.43 93.359 2 0.0027701 3 63691 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.597 82.264 16292000 0 4076100 0 0 4605500 7610600 2603 1351 2573 11380;11381;11382 7509;7510;7511 7509 3 GFCQDESIYKTEPRPEAK Unmodified 2154.0052 0.0051683175 1351 Q92547;H0Y8I7;I3L1F2 TOPBP1 DNA topoisomerase 2-binding protein 1 yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 100.09 92.432 3;4 0.001447 6 69063 20150910_Q1_SA_NiHu_Masterprac_group13_C 57.973 35.139 41592000 0 9076500 11528000 4689700 7328400 8969400 2604 1351 2574 11383;11384;11385;11386;11387;11388;11389;11390;11391;11392 7512;7513;7514;7515;7516;7517 7513 6 GFDTSSSSSNSAASSSFK Unmodified 1752.7439 0.74385148 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 81.319 79.336 2 0.0042911 1 54522 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.68 26.897 1252500 0 418970 0 0 0 833580 2605 531 2575 11393;11394 7518 7518 1 GFEAGFENEDNSK Unmodified 1442.595 0.5950024 1282 Q8IWY8-2;Q8IWY8;Q8IWY8-4 ZSCAN29 Zinc finger and SCAN domain-containing protein 29 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 101.51 91.93 2 0.0022327 2 62089 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.215 51.584 2860900 0 579490 396860 0 375730 1508900 2606 1282 2576 11395;11396;11397;11398 7519;7520 7520 2 GFGYGQGAGALVHAQ Unmodified 1431.6895 0.6895119 1152 Q16527;F8VW96 CSRP2 Cysteine and glycine-rich protein 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 131.05 123.25 2 2.5164E-102 5 82815 20150910_Q1_SA_NiHu_Masterprac_group13_C 139.78 119.94 267400000 31643000 61891000 0 10351000 12362000 151160000 2607 1152 2577 11399;11400;11401;11402;11403;11404 7521;7522;7523;7524;7525 7521 5 GFGYKGSCFHR Unmodified 1314.5928 0.59277475 999 P62937;B4DM82;F8WE65;C9J5S7 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 76.632 71.58 3 0.020044 1 55029 20150910_Q1_SA_NiHu_Masterprac_group15_C 56.043 42.107 4086900 0 572840 0 749610 808190 1956200 2608 999 2578 11405;11406;11407;11408 7526 7526 1 GFLQGAPAGGEK Unmodified 1130.572 0.57202253 1594 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RJ97;E5RFF3;H0YC29 TRPS1 Zinc finger transcription factor Trps1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 97.052 89.039 2 0.0055041 2 60993 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.864 35.782 5601200 555370 695020 870320 413720 859320 2207500 2609 1594 2579 11409;11410;11411;11412;11413;11414 7527;7528 7527 2 GFNEGLWEIDNNPKVK Unmodified 1858.9214 0.92136233 741 O75475;O75475-2 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 135.11 133.25 2;3 2.2195E-50 3 86125 20150910_Q1_SA_NiHu_Masterprac_group10_B 120.29 89.958 66074000 0 55335000 0 10346000 0 391940 2610 741 2580 11415;11416;11417 7529;7530;7531 7531 3 GFNLPYQDARK Unmodified 1307.6622 0.66223452 1321 Q8NE71;Q8NE71-2;H0YGW7;Q5STZ7 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 115.34 107.75 3 0.002144 2 73957 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.513 54.789 15960000 4529800 2119700 1206400 1747900 0 6356000 2611 1321 2581 11418;11419;11420;11421;11422 7532;7533 7532 2 GFPHVIYAR Unmodified 1058.5661 0.56614929 385 E7EUB6;Q9BYG6;Q13485 SMAD4 Mothers against decapentaplegic homolog 4 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 120.98 107.98 2 0.02 1 73863 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.825 58.66 5791400 0 0 735360 0 2083600 2972400 2612 385 2582 11423;11424;11425 7534 7534 1 GFQGTTQTSHGSLMTNK Unmodified 1793.8366 0.83664643 130 Q8NDF8;H3BQM0;E9PC61;B4DV38 PAPD5 PAP-associated domain-containing protein 5 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 82.621 73.648 3 0.0010738 1 51010 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.719 70.967 2787500 0 0 497680 0 0 2289900 2613 130 2583 11426;11427 7535 7535 1 GFQRPVYLFHK Unmodified 1390.751 0.75098995 332 D6W5V7;Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 116.07 113.79 3 0.0035604 1 77549 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.261 82.261 4141500 0 0 0 804620 0 3336800 2614 332 2584 11428;11429 7536 7536 1 GFSCGSAIVGGGK Unmodified 1195.5656 0.56555694 300 F8VS64;P19013;CON__P19013;F5H8K9;F8VX05;F8VZR6 KRT4 Keratin, type II cytoskeletal 4 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 98.109 89.086 2 0.0019752 1 65624 20150910_Q1_SA_NiHu_Masterprac_group15_C 82.774 57.936 16018000 0 0 1776100 161540 8193400 5886800 + 2615 300 2585 11430;11431;11432;11433 7537 7537 1 GFSDSGGGPPAKQR Unmodified 1359.6531 0.6531264 1486 Q9H307;G3V5F0;G3V579 PNN Pinin yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 43.682 38.75 3 0.0070564 1 27549 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.448 40.328 976190 0 219240 0 0 319730 437230 2616 1486 2586 11434;11435;11436 7538 7538 1 GFSLLATEDK Unmodified 1079.5499 0.5498901 815 P09874;F8WC10 PARP1 Poly [ADP-ribose] polymerase 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.74 131.14 2 2.1572E-11 1 84575 20150910_Q1_SA_NiHu_Masterprac_group10_B 117.71 91.642 0 0 0 0 0 0 0 2617 815 2587 11437 7539 7539 1 GFSLLATEDKEALKK Unmodified 1648.9036 0.903587 815 P09874;F8WC10 PARP1 Poly [ADP-ribose] polymerase 1 yes no 0 0 2 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 124.87 119.58 3 0.0078539 4 82077 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.167 51.096 18699000 12835000 870340 0 1262300 0 3731600 2618 815 2588 11438;11439;11440;11441 7540;7541;7542;7543 7540 4 GFSQSANLVVHQR Unmodified 1441.7426 0.74261011 835 P13682;B4DUB8 ZNF35 Zinc finger protein 35 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 1 1 1 1 100.82 92.687 2;3 0.0012815 7 62251 20150910_Q1_SA_NiHu_Masterprac_group10_B 80.014 64.853 15580000 3319300 1404900 1168400 912460 3337700 5437700 2619 835 2589 11442;11443;11444;11445;11446;11447;11448;11449 7544;7545;7546;7547;7548;7549;7550 7546 7 GFSRPDHLSCHVK Unmodified 1538.7412 0.7412299 1094 Q14119 VEZF1 Vascular endothelial zinc finger 1 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 66.112 59.909 3 0.0011463 4 42047 20150910_Q1_SA_NiHu_Masterprac_group13_B 77.185 77.185 7552500 148600 0 1286400 2271300 0 3846200 2620 1094 2590 11450;11451;11452;11453 7551;7552;7553;7554 7552 4 GFSSGSAVVSGGSRR Unmodified 1409.7011 0.70113922 302 P35908;CON__P35908;CON__Q3TTY5 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 64.342 59.491 3 0.0003823 3 42009 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.563 48.907 5086800 0 1084200 0 1065300 1032800 1904500 + 2621 302 2591 11454;11455;11456;11457 7555;7556;7557 7556 3 GFYDKDSSGWSSSKDK Unmodified 1792.7904 0.79040774 693 O00571;B4DLU5;B4E3C4;B4DLA0 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 80.514 73.521 3 0.019639 1 57710 20150910_Q1_SA_NiHu_Masterprac_group13_C 47.506 38.228 3609200 714370 519320 1384500 990950 0 0 2622 693 2592 11458;11459;11460;11461 7558 7558 1 GFYSNGAASSVSTK Unmodified 1374.6416 0.64155866 896 P35251-2;P35251;H0Y8U4 RFC1 Replication factor C subunit 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 87.433 78.584 2 0.00061501 1 54235 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.083 74.728 1718400 0 0 0 0 352120 1366300 2623 896 2593 11462;11463 7559 7559 1 GGAAVDPDSGLEHSAHVLEK Unmodified 1987.9599 0.95993268 815 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 115.44 106 3 0.00018475 2 69647 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.614 51.565 3745100 875070 1594800 640560 0 0 634650 2624 815 2594 11464;11465;11466;11467 7560;7561 7560 2 GGENVKAINQQTGAFVEISR Unmodified 2117.0865 0.086530181 1366 Q92945-2;Q92945 KHSRP Far upstream element-binding protein 2 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 131.2 120.79 3 1.7372E-171 5 83330 20150910_Q1_SA_NiHu_Masterprac_group10_B 151.28 120.41 72020000 24243000 15711000 20254000 10121000 1692000 0 2625 1366 2595 11468;11469;11470;11471;11472 7562;7563;7564;7565;7566 7565 5 GGEQINKIQQDSGCK Unmodified 1660.7839 0.78388257 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 59.163 52.526 2;3 2.0019E-13 12 43252 20150910_Q1_SA_NiHu_Masterprac_group15_C 103.3 87.271 66431000 4609500 13360000 10585000 6164700 15158000 16554000 2626 1366 2596 11473;11474;11475;11476;11477;11478;11479;11480;11481;11482;11483;11484;11485 7567;7568;7569;7570;7571;7572;7573;7574;7575;7576;7577;7578 7573 11 GGEQINKIQQDSGCKVQISPDSGGLPER Unmodified 2996.4622 0.46216109 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 125.76 115.97 4 1.6474E-19 4 80520 20150910_Q1_SA_NiHu_Masterprac_group13_C 75.044 64.813 19949000 7251300 2138500 8337100 0 0 2222300 2627 1366 2597 11486;11487;11488;11489 7579;7580;7581;7582 7579 4 GGETIKQLQER Unmodified 1257.6677 0.66771383 1366;1394 Q92945-2;Q92945;E7EP96;Q96I24;A6NJ37;Q96I24-2 KHSRP;FUBP3 Far upstream element-binding protein 2;Far upstream element-binding protein 3 no no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 2 1 2 1 2 65.593 59.868 2;3 2.5885E-07 9 42261 20150910_Q1_SA_NiHu_Masterprac_group15_B 107.97 63.354 78412000 9340300 19452000 4772500 5742800 15821000 23283000 2628 1366;1394 2598 11490;11491;11492;11493;11494;11495;11496;11497;11498;11499;11500 7583;7584;7585;7586;7587;7588;7589;7590;7591 7584 8 GGGDGGGGGRSFSQPEAGGSHHK Unmodified 2094.9216 0.92159012 236 Q8WVV9-4;C9J9G0;Q8WVV9;Q5JB52;B7WPG3;Q8WVV9-3;Q8WVV9-2;C9IYN3 HNRNPLL;HNRPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 35.533 31.071 4 0.0081476 3 26626 20150910_Q1_SA_NiHu_Masterprac_group15_C 40.158 28.404 9339200 890730 3402200 0 0 1042600 4003600 2629 236 2599 11501;11502;11503;11504 7592;7593;7594 7592 3 GGGGGGFRGFSSGSAVVSGGSR Unmodified 1898.8983 0.89833548 302 P35908;CON__P35908;CON__Q3TTY5 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 109.14 103.39 3 0.00054727 2 70751 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.302 36.722 4887200 0 681010 1572300 1336900 0 1297100 + 2630 302 2600 11505;11506;11507;11508 7595;7596 7596 2 GGGGPGGGGPGGGSAGGPSQPPGGGGPGIRK Unmodified 2397.1534 0.15338097 1366 Q92945-2;Q92945 KHSRP Far upstream element-binding protein 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 76.574 67.851 3 1.4558E-32 6 46997 20150910_Q1_SA_NiHu_Masterprac_group13_B 78.206 69.545 23723000 3577300 5713700 6785200 3624200 4023100 0 2631 1366 2601 11509;11510;11511;11512;11513 7597;7598;7599;7600;7601;7602 7597 6 GGGQEERPFVAR Unmodified 1301.6476 0.64764709 1511 Q9HA64;F5H4E4;I3L2G3 FN3KRP Ketosamine-3-kinase yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 58.155 56.173 3 0.033206 1 39737 20150910_Q1_SA_NiHu_Masterprac_group10_B 46.73 27.486 923830 0 656640 0 0 0 267190 2632 1511 2602 11514;11515 7603 7603 1 GGHFYSAKPEILR Unmodified 1473.7728 0.7728476 959 P52701;F5H769;P52701-2;E7ER38;C9JH55;C9J8Y8;C9J7Y7 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 104.53 94.68 3 0.0066807 1 68794 20150910_Q1_SA_NiHu_Masterprac_group15_C 59.155 34.191 9861300 0 0 0 0 3924000 5937300 2633 959 2603 11516;11517 7604 7604 1 GGIPNVEGAAK Unmodified 1011.5349 0.53490874 1455 Q9BVP2-2;Q9BVP2 GNL3 Guanine nucleotide-binding protein-like 3 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 88.88 80.168 2 0.012994 1 60174 20150910_Q1_SA_NiHu_Masterprac_group15_C 61.344 23.788 16111000 2099200 0 1904600 1867000 5361100 4878700 2634 1455 2604 11518;11519;11520;11521;11522 7605 7605 1 GGKPEPPAMPQPVPTA Unmodified 1572.797 0.79701344 457 E9PPU1;H0YEU2;E9PL09;P23396 RPS3 40S ribosomal protein S3 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 124.9 117.14 2 0.00075833 5 80994 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.531 49.982 22758000 13302000 2119600 0 2069000 2812800 2454600 2635 457 2605 11523;11524;11525;11526;11527 7606;7607;7608;7609;7610 7606 5 GGLVWDENSSDGRYVK Unmodified 1780.838 0.83802663 944 P49761-1;P49761;P49761-3;G5E959;H3BRW2;H3BNQ5 CLK3 Dual specificity protein kinase CLK3 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 123.47 115.69 2;3 0.00081121 3 76335 20150910_Q1_SA_NiHu_Masterprac_group10_C 70.373 48.512 18703000 3201100 2324200 0 1076000 4687600 7414000 2636 944 2606 11528;11529;11530;11531;11532 7611;7612;7613 7613 3 GGPESRKDPSGASNPSADSPLHR Unmodified 2318.0999 0.099948414 201 B7ZAP5;P55317 FOXA1 Hepatocyte nuclear factor 3-alpha yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 66.048 57.635 4 0.00054649 1 40514 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.457 37.17 4831000 531560 859910 722320 0 1061300 1655900 2637 201 2607 11533;11534;11535;11536;11537 7614 7614 0 GGPGSTLSFVGK Unmodified 1105.5768 0.57677356 1437 Q9BQ61 C19orf43 Uncharacterized protein C19orf43 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 124.03 113.35 2 2.2159E-18 6 77535 20150910_Q1_SA_NiHu_Masterprac_group15_B 116.74 71.715 65722000 8559600 9946700 13286000 4298200 5940000 23692000 2638 1437 2608 11538;11539;11540;11541;11542;11543;11544 7615;7616;7617;7618;7619;7620 7617 6 GGPGSTLSFVGKR Unmodified 1261.6779 0.67788459 1437 Q9BQ61 C19orf43 Uncharacterized protein C19orf43 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 99.545 96.786 3 0.0062219 1 65916 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.448 31.372 2880200 0 0 0 0 0 2880200 2639 1437 2609 11545 7621 7621 1 GGPLQALTR Unmodified 911.51886 0.51886475 914 P42167 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 121.59 105.83 2 0.0060651 2 75611 20150910_Q1_SA_NiHu_Masterprac_group15_C 93.649 39.492 4251400 1513400 0 0 0 2738000 0 2640 914 2610 11546;11547 7622;7623 7622 2 GGPPGQFHDNANGGQNGTVQEIMIPAGK Unmodified 2790.3144 0.31437464 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 131.91 122.41 3 4.6878E-93 8 86872 20150910_Q1_SA_NiHu_Masterprac_group15_B 118.09 107.75 381240000 73714000 73720000 77915000 27208000 18171000 110510000 2641 1366 2611 11548;11549;11550;11551;11552;11553 7624;7625;7626;7627;7628;7629;7630;7631 7627 8 GGPPGQFHDNANGGQNGTVQEIMIPAGK Oxidation (M) 2806.3093 0.30928926 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 1 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 130.64 117.07 3 4.2555E-76 4 81618 20150910_Q1_SA_NiHu_Masterprac_group13_C 111.27 87.754 50504000 0 0 12724000 0 6464400 31315000 2642 1366 2611 11554;11555;11556 7632;7633;7634;7635 7632 156 4 GGPRGFSCGSAIVGGGK Unmodified 1562.7624 0.76235927 300 F8VS64;P19013;CON__P19013;F5H8K9;F8VX05;F8VZR6 KRT4 Keratin, type II cytoskeletal 4 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 100.89 88.854 3 0.0017102 2 65506 20150910_Q1_SA_NiHu_Masterprac_group15_C 58.246 27.938 10407000 0 0 1618800 0 3516400 5272200 + 2643 300 2612 11557;11558;11559 7636;7637 7637 2 GGPSPGDVEAIK Unmodified 1125.5666 0.5666028 814 P09661;H0YLR3;H0YMA0 SNRPA1 U2 small nuclear ribonucleoprotein A' yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 94.217 86.696 2 0.0028937 2 59230 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.731 16.183 12269000 971980 2981200 0 0 3810600 4505300 2644 814 2613 11560;11561;11562;11563 7638;7639 7638 2 GGQGPRPNICGICGK Unmodified 1569.7504 0.75041438 646 H3BS42;Q9H5H4;B7Z2Y7 ZNF768 Zinc finger protein 768 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 89.874 82.195 3 0.027889 1 56009 20150910_Q1_SA_NiHu_Masterprac_group10_B 40.477 25.186 7074700 612810 1384400 1184100 902270 1070000 1921100 2645 646 2614 11564;11565;11566;11567;11568;11569 7640 7640 1 GGRGDVGSADIQDLEK Unmodified 1615.7802 0.7801774 672 H7C4H2;Q9Y5M8 SRPRB Signal recognition particle receptor subunit beta yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 99.464 94.283 3 0.00174 4 63171 20150910_Q1_SA_NiHu_Masterprac_group10_B 77.027 58.195 6794900 1215500 2359100 0 0 0 3220300 2646 672 2615 11570;11571;11572 7641;7642;7643;7644 7642 4 GGRHVDYVADQIVTK Unmodified 1656.8584 0.85836815 655 P11388;H7BXX8;P11388-2;P11388-3;P11388-4;C9J5P2;H7BXH5 TOP2A DNA topoisomerase 2-alpha yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 95.91 86.485 3 4.9051E-10 2 59128 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.04 79.095 8471000 0 1167700 541230 0 1730800 5031300 2647 655 2616 11573;11574;11575;11576 7645;7646 7645 2 GGRHVDYVVDQVVGK Unmodified 1626.8478 0.84780346 1035 Q02880-2;Q02880;E9PCY5 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 102.01 99.726 3 2.1405E-05 3 66124 20150910_Q1_SA_NiHu_Masterprac_group10_B 89.506 38.043 5220000 0 1281400 0 0 0 3938600 2648 1035 2617 11577;11578 7647;7648;7649 7648 3 GGSFGGRSSGSPYGGGYGSGGGSGGYGSR Unmodified 2528.0701 0.070104849 371;955 E7EWI9;E7ERJ4;P51991-2;H7C1J8;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 94.419 86.557 3 0.00013014 3 59239 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.851 37.179 28414000 6409100 4046200 3531100 3394000 4698800 6335100 2649 371;955 2618 11579;11580;11581;11582;11583;11584 7650;7651;7652 7650 3 GGSGGGGSISGGGYGSGGGSGGRYGSGGGSK Unmodified 2434.0494 0.049369407 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 60.908 54.33 3 6.2408E-25 4 38491 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.112 59.346 21038000 0 1141400 9634800 2965700 2343800 4952300 + 2650 302 2619 11585;11586;11587;11588;11589 7653;7654;7655;7656 7654 4 GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unmodified 3222.2743 0.27429656 899 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 82.732 74.386 3 1.1011E-19 1 58324 20150910_Q1_SA_NiHu_Masterprac_group13_C 51.268 51.268 7684600 0 0 7030000 654570 0 0 + 2651 899 2620 11590;11591 7657 7657 1 GGSGGSYGGGGSGGGYGGGSGSR Unmodified 1790.7204 0.72043069 899 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 43.661 40.075 2 0.0073141 1 32252 20150910_Q1_SA_NiHu_Masterprac_group13_C 40.533 14.033 2410700 0 294110 1353300 421790 0 341430 + 2652 899 2621 11592;11593;11594;11595 7658 7658 1 GGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSR Unmodified 2869.2108 0.21084886 899 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 56.31 44.029 4 0.015545 1 36258 20150910_Q1_SA_NiHu_Masterprac_group13_C 22.698 17.424 845260 0 0 845260 0 0 0 + 2653 899 2622 11596 7659 7659 1 GGSGSGPTIEEVD Unmodified 1203.5255 0.52552585 619 P08107;H0YG33;F8VZJ4;F5H1D3;F5GZ62;Q5SP16;E7EP94 HSPA1A Heat shock 70 kDa protein 1A/1B yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 97.752 88.402 2 0.010497 1 60509 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.04 33.471 2876400 0 0 0 0 1202900 1673500 2654 619 2623 11597;11598 7660 7660 1 GGSISGGGYGSGGGK Unmodified 1196.5422 0.54217896 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 38.324 37.17 2 0.037418 1 26028 20150910_Q1_SA_NiHu_Masterprac_group10_B 38.399 16.743 1799200 0 1319400 0 479790 0 0 + 2655 302 2624 11599;11600 7661 7661 1 GGSLESDGCPKEPAK Unmodified 1530.6984 0.69842161 953 P51608-2;P51608 MECP2 Methyl-CpG-binding protein 2 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 53.723 46.955 3 0.00056754 2 33561 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.925 52.617 4979200 0 0 358210 564760 1964900 2091300 2656 953 2625 11601;11602;11603;11604 7662;7663 7663 2 GGTLFGGEVCK Unmodified 1123.5332 0.53319418 913 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 114.86 101.94 2 0.030492 1 69554 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.286 31.08 12703000 702490 0 1539800 0 284370 10177000 2657 913 2626 11605;11606;11607;11608 7664 7664 1 GGTRELLPCGPETQPQSETK Unmodified 2184.0481 0.048095765 391 Q76L83-2;E7EWD6;Q76L83 ASXL2 Putative Polycomb group protein ASXL2 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 107.14 98.302 3 0.00035252 2 67026 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.621 36.726 5670500 574050 1243300 1275800 0 0 2577300 2658 391 2627 11609;11610;11611;11612 7665;7666 7666 2 GGVEEGPTVLRK Unmodified 1240.6776 0.67755023 793 P05089-3;P05089;P05089-2 ARG1 Arginase-1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 3 2 1 1 74.64 68.223 3 0.00093703 3 55291 20150910_Q1_SA_NiHu_Masterprac_group13_C 80.834 46.784 7741700 155140 2878600 2074700 901100 0 1732200 2659 793 2628 11613;11614;11615;11616;11617;11618;11619;11620 7667;7668;7669 7667 3 GGVEVLESCQGSSNGAQDQEASEQFGSPVAERGK Unmodified 3493.5652 0.56518219 1267 Q86W50;B7Z3X7 METTL16 Methyltransferase-like protein 16 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 130.56 129.95 3 0.00017106 1 83404 20150910_Q1_SA_NiHu_Masterprac_group10_B 32.172 28.474 4714600 0 4714600 0 0 0 0 2660 1267 2629 11621 7670 7670 1 GGVRGGQDQFNWEDVK Unmodified 1790.8336 0.83360996 1449 Q9BU76-4;Q9BU76;Q9BU76-2;Q9BU76-3 MMTAG2 Multiple myeloma tumor-associated protein 2 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 122.1 119.72 3 0.00075491 3 81383 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.526 63.205 11200000 0 0 0 3459500 0 7741000 2661 1449 2630 11622;11623 7671;7672;7673 7672 3 GHAVGDIPGVRFK Unmodified 1351.7361 0.73606817 325 D6RD47;P62266 RPS23 40S ribosomal protein S23 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 108.45 101.4 3 0.0019702 1 69172 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.505 69.497 4809300 0 0 1125900 1121700 0 2561800 2662 325 2631 11624;11625;11626 7674 7674 1 GHLSRPEAQSLSPYTTSANR Unmodified 2171.0719 0.07194275 754 O94776;Q68DB1 MTA2;DKFZp686F2281 Metastasis-associated protein MTA2 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 95.539 88.464 3;4 7.6754E-11 5 60561 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.872 72.293 42537000 0 9160200 8820200 0 0 24557000 2663 754 2632 11627;11628;11629;11630;11631;11632 7675;7676;7677;7678;7679 7676 5 GHLSRPEAQSLSPYTTSANRAK Unmodified 2370.204 0.20401956 754 O94776;Q68DB1 MTA2;DKFZp686F2281 Metastasis-associated protein MTA2 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 2 88.795 81.843 3;4 2.7951E-138 4 55968 20150910_Q1_SA_NiHu_Masterprac_group15_B 133.35 103.27 54869000 0 13594000 13382000 0 0 27893000 2664 754 2633 11633;11634;11635;11636 7680;7681;7682;7683 7682 4 GHQQLYWSHPRK Unmodified 1535.7746 0.77457894 988 P62273;P62273-2 RPS29 40S ribosomal protein S29 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 55.664 50.701 3 0.0011179 2 36111 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.739 56.098 2386400 0 0 0 329130 810020 1247200 2665 988 2634 11637;11638;11639 7684;7685 7684 2 GIASTSDPPTANIKPTPVVSTPSK Unmodified 2364.2537 0.25365509 827 P12270 TPR Nucleoprotein TPR yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 125.99 116.2 3 2.7316E-41 4 76217 20150910_Q1_SA_NiHu_Masterprac_group10_C 101.75 88.617 24681000 9625500 2132100 10173000 0 0 2750400 2666 827 2635 11640;11641;11642;11643 7686;7687;7688;7689 7689 4 GIAVIVTGQGEQCER Unmodified 1615.7988 0.79880436 1583 Q9UBP0-4;Q9UBP0-3;Q9UBP0-2;Q9UBP0 SPAST Spastin yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 113.32 110.49 2 0.0044172 2 75665 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.276 35.453 1667800 0 576960 0 0 0 1090800 2667 1583 2636 11644;11645 7690;7691 7690 2 GIDFKEDGNILGHK Unmodified 1541.7838 0.78380622 310 CON__Q9U6Y5 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 119.05 118.35 3 0.040622 1 76375 20150910_Q1_SA_NiHu_Masterprac_group10_B 74.987 49.66 0 0 0 0 0 0 0 + 2668 310 2637 11646 7692 7692 1 GIEERQQLIK Unmodified 1212.6826 0.68263561 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 80.483 71.258 2 0.0071804 1 49466 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.597 59.657 7427900 0 1062000 1460700 0 165310 4739900 2669 1344 2638 11647;11648;11649;11650 7693 7693 1 GIGEFFR Unmodified 824.41809 0.41808807 1124 Q15004;H0YMA4;H0YKX3 KIAA0101 PCNA-associated factor yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.99 132.39 2 0.010676 1 85978 20150910_Q1_SA_NiHu_Masterprac_group10_B 100.74 58.267 11111000 0 11111000 0 0 0 0 2670 1124 2639 11651 7694 7694 1 GIGEFFRLSPKDSEK Unmodified 1708.8784 0.87843489 1124 Q15004;H0YMA4;H0YKX3 KIAA0101 PCNA-associated factor yes no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 132.99 130.51 3 0.016753 2 88164 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.599 28.546 12939000 0 0 0 2177100 0 10762000 2671 1124 2640 11652;11653 7695;7696 7696 1 GIHVETLETEK Unmodified 1254.6456 0.6455814 772 O95453-2;O95453-3;O95453;H3BRK1 PARN Poly(A)-specific ribonuclease PARN yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 3 2 91.42 83.612 2;3 3.659E-06 9 57041 20150910_Q1_SA_NiHu_Masterprac_group10_C 106.62 43.402 27992000 2807300 3881700 3841200 1712600 4938300 10810000 2672 772 2641 11654;11655;11656;11657;11658;11659;11660;11661;11662;11663;11664;11665;11666;11667 7697;7698;7699;7700;7701;7702;7703;7704;7705 7705 9 GINSSNVENQLQATQAARK Unmodified 2028.0348 0.034828962 957 P52292 KPNA2 Importin subunit alpha-1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 102.31 99.976 3 0.020203 1 66215 20150910_Q1_SA_NiHu_Masterprac_group10_B 33.667 18.152 2424700 0 1000700 0 0 0 1424000 2673 957 2642 11668;11669 7706 7706 1 GINVFRETAKQK Unmodified 1389.7728 0.7728476 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 78.252 70.892 3 0.012118 1 49098 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.214 38.781 14450000 0 4664300 2540900 1228100 1608000 4408300 2674 919;920 2643 11670;11671;11672;11673;11674 7707 7707 1 GIPACEQNVSRK Unmodified 1357.6772 0.67723266 1032 Q02040 AKAP17A A-kinase anchor protein 17A yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 56.563 46.562 3 0.0063056 2 34749 20150910_Q1_SA_NiHu_Masterprac_group10_C 57.175 40.058 1464100 638600 0 0 0 825470 0 2675 1032 2644 11675;11676 7708;7709 7709 2 GIPHLVTHDAR Unmodified 1214.652 0.65200419 993 P62701;Q8TD47;C9JEH7;P22090 RPS4X;RPS4Y2;RPS4Y1 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 77.219 68.721 3 0.0055651 1 53312 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.721 48.325 4224100 0 0 0 0 2551500 1672600 2676 993 2645 11677;11678 7710 7710 1 GIPLESTDGERLVK Unmodified 1512.8148 0.814772 563;1062 P08651-4;P08651-5;P08651-3;P08651-2;P08651;F8W9H9;Q12857-2;B1AKN5;F5H0R0;Q12857;B1AKN8;F8W8W3;B1AKN6;B1AKN7 NFIC;NFIA Nuclear factor 1 C-type;Nuclear factor 1 A-type no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 1 1 2 124.04 114.26 2;3 7.8074E-13 5 75784 20150910_Q1_SA_NiHu_Masterprac_group10_C 104.17 82.232 35424000 12198000 3591700 7535300 0 931470 11168000 2677 563;1062 2646 11679;11680;11681;11682;11683;11684;11685;11686 7711;7712;7713;7714;7715 7715 5 GIPVVEHKVEK Unmodified 1233.7081 0.70812208 1035;655 P11388;H7BXX8;P11388-2;P11388-3;P11388-4;C9J5P2;H7BXH5;Q02880-2;Q02880;E9PCY5 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta;DNA topoisomerase 2 no no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 68.158 60.191 3 0.0048077 2 48858 20150910_Q1_SA_NiHu_Masterprac_group13_C 75.566 52.784 13330000 0 0 2726500 546380 3302900 6754700 2678 655;1035 2647 11687;11688;11689;11690 7716;7717 7716 2 GIRIPYPGRSPQDLASTSR Unmodified 2070.097 0.097035288 1519 Q9HC52;C9J6K3;C9JM54 CBX8 Chromobox protein homolog 8 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 130.95 125.98 4 0.028206 1 85786 20150910_Q1_SA_NiHu_Masterprac_group15_B 34.669 21.674 23200000 0 0 0 0 0 23200000 2679 1519 2648 11691 7718 7718 1 GISAGAVQTAGK Unmodified 1058.572 0.57202253 923 P46087;Q3KQS4;F5GWB7;F5H709 NOP2 Putative ribosomal RNA methyltransferase NOP2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 64.399 57.405 2 0.0019624 5 41091 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.356 48.578 13014000 830100 1172700 786710 1119800 6014300 3089900 2680 923 2649 11692;11693;11694;11695;11696;11697 7719;7720;7721;7722;7723 7721 5 GISQFQVLGSQSRDCHPK Unmodified 2042.9956 0.99560668 1117 Q14865-2;Q14865 ARID5B AT-rich interactive domain-containing protein 5B yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 114.22 104.85 4 0.0090036 1 71897 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.208 31.478 3749100 369030 1122300 1119000 0 0 1138800 2681 1117 2650 11698;11699;11700;11701 7724 7724 1 GITEECLKQPSLEQK Unmodified 1758.8822 0.88219964 364 E7EQT4;Q9UKV3;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 2 2 110.86 100.78 2;3 1.0474E-42 3 68878 20150910_Q1_SA_NiHu_Masterprac_group15_B 122.66 94.552 12302000 0 3639000 1336300 0 3082000 4244600 2682 364 2651 11702;11703;11704;11705;11706;11707 7725;7726;7727 7726 3 GIVEFASKPAAR Unmodified 1244.6877 0.68772099 865 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 2 1 1 2 1 100.99 92.399 2;3 1.0607E-09 7 62018 20150910_Q1_SA_NiHu_Masterprac_group10_B 107.09 72.334 27944000 8900700 6992500 1268500 986920 6612100 3182800 2683 865 2652 11708;11709;11710;11711;11712;11713;11714;11715;11716 7728;7729;7730;7731;7732;7733;7734 7732 7 GIVEFASKPAARK Unmodified 1372.7827 0.78268401 865 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 2 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 83.886 76.486 3 0.0052487 3 59782 20150910_Q1_SA_NiHu_Masterprac_group13_C 74.237 58.296 16956000 0 1640300 1619500 2302600 6273800 5119500 2684 865 2653 11717;11718;11719;11720;11721 7735;7736;7737 7735 3 GIVEFSGKPAAR Unmodified 1230.6721 0.67207093 1133 Q15233;F5GYZ3;H7C367;C9IZL7 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 2 2 2 94.106 85.646 2;3 1.0598E-49 11 65224 20150910_Q1_SA_NiHu_Masterprac_group13_C 131.17 86.747 41077000 5883900 6052400 4935100 4638400 8085600 11482000 2685 1133 2654 11722;11723;11724;11725;11726;11727;11728;11729;11730;11731;11732;11733 7738;7739;7740;7741;7742;7743;7744;7745;7746;7747;7748 7741 11 GIVEFSGKPAARK Unmodified 1358.767 0.76703394 1133 Q15233;F5GYZ3;H7C367;C9IZL7 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 2 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 79.205 68.302 3 0.0044402 4 47673 20150910_Q1_SA_NiHu_Masterprac_group10_B 79.283 40.703 6271500 1059700 1152800 1122900 0 2936100 0 2686 1133 2655 11734;11735;11736;11737 7749;7750;7751;7752 7750 4 GIVESSVTSAVSGK Unmodified 1319.6933 0.69325988 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 114.56 113.55 2 0.027934 1 73716 20150910_Q1_SA_NiHu_Masterprac_group10_B 52.966 26.92 1914000 0 1914000 0 0 0 0 2687 1325 2656 11738 7753 7753 0 GIVHITSESLAK Unmodified 1253.698 0.69795133 1664 Q9Y6X8 ZHX2 Zinc fingers and homeoboxes protein 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 101.2 98.14 3 0.0021736 1 66910 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.9 56.179 2065900 0 0 0 0 0 2065900 2688 1664 2657 11739 7754 7754 1 GIYAMASR Unmodified 867.42727 0.42727255 193 B7Z6Q6;Q99661;Q99661-2;B7Z7M6 KIF2C Kinesin-like protein KIF2C yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 85.636 76.387 2 2.4518E-09 2 52778 20150910_Q1_SA_NiHu_Masterprac_group15_B 122.74 71.706 23282000 0 2249700 1938000 0 5630500 13464000 2689 193 2658 11740;11741;11742;11743 7755;7756 7755 2 GKEDALVTKNLVPGESVYGEK Unmodified 2232.1638 0.16377745 862 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 2 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 2 2 130.49 127.11 3;4 5.994E-33 5 77319 20150910_Q1_SA_NiHu_Masterprac_group10_C 105.94 72.073 53046000 11760000 32721000 0 8565200 0 0 2690 862 2659 11744;11745;11746;11747;11748 7757;7758;7759;7760;7761 7761 5 GKGEAGNSDSMCLR Unmodified 1480.6399 0.63986087 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 2 52.645 48.144 2;3 6.4618E-08 7 34481 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.676 84.244 34608000 2117700 4950800 6273100 1532100 3208900 16525000 2691 919;920 2660 11749;11750;11751;11752;11753;11754;11755;11756;11757 7762;7763;7764;7765;7766;7767;7768 7764 7 GKGEGDLSQLSK Unmodified 1217.6252 0.62518031 1569 Q9P013 CWC15 Spliceosome-associated protein CWC15 homolog yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 2 1 62.41 54.627 3 3.2936E-27 9 45711 20150910_Q1_SA_NiHu_Masterprac_group13_C 124.12 62.564 15029000 3218200 1441900 2818000 915610 2073800 4561800 2692 1569 2661 11758;11759;11760;11761;11762;11763;11764;11765 7769;7770;7771;7772;7773;7774;7775;7776;7777 7772 9 GKGEITPAAIQK Unmodified 1211.6874 0.68738664 1140 Q15532-2;Q15532 SS18 Protein SSXT yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 2 2 2 71.739 62.028 2;3 0.0037491 3 43593 20150910_Q1_SA_NiHu_Masterprac_group10_B 68.515 33.747 6160400 0 638780 2056700 0 750640 2714200 2693 1140 2662 11766;11767;11768;11769;11770;11771;11772 7778;7779;7780 7780 3 GKPVGLVGVTELSDAQK Unmodified 1696.9359 0.93594977 1283 Q8IWZ8 SUGP1 SURP and G-patch domain-containing protein 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 130.19 129.59 3 0.00028537 1 83063 20150910_Q1_SA_NiHu_Masterprac_group10_B 83.894 60.405 26732000 0 26732000 0 0 0 0 2694 1283 2663 11773 7781 7781 1 GKPVLELPERK Unmodified 1264.7503 0.75032125 1107 Q14527;Q14527-2;H7C5K0 HLTF Helicase-like transcription factor yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 91.105 81.755 3 0.021817 1 56101 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.261 41.03 5849700 0 957830 1055500 0 892120 2944300 2695 1107 2664 11774;11775;11776;11777 7782 7782 1 GKSMGVLFGGRSYMPSTHR 2 Oxidation (M) 2099.0041 0.0040628805 971 P55895 RAG2 V(D)J recombination-activating protein 2 yes yes 0 2 2 By matching By matching By matching By matching By MS/MS By matching 1 133.52 115.68 2 0.0017264 1 82601 20150910_Q1_SA_NiHu_Masterprac_group15_C 51.798 16.955 260180000 0 0 0 0 260180000 0 2696 971 2665 11778 7783 7783 113;114 1 GLAGPAASYGPYTR Unmodified 1379.6834 0.68336389 976 P58012 FOXL2 Forkhead box protein L2 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 118.66 110.42 2 0.00075548 2 75508 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.498 73.313 27919000 0 5313800 2129800 787280 853130 18835000 2697 976 2666 11779;11780;11781;11782;11783 7784;7785 7784 2 GLDISNVK Unmodified 844.46543 0.46543219 693 O00571;O00571-2 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 91.728 83.966 2 0.009371 2 62267 20150910_Q1_SA_NiHu_Masterprac_group15_C 101.33 54.937 18133000 750880 2302900 871330 658490 3440200 10109000 2698 693 2667 11784;11785;11786;11787;11788;11789 7786;7787 7787 2 GLDNTEFQGK Unmodified 1107.5197 0.51965261 1457 Q9BWF3;E9PB51;Q9BQ04;E7EQS3 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 81.974 70.711 2 0.022444 1 49297 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.593 46.26 1473900 0 0 729120 0 171230 573520 2699 1457 2668 11790;11791;11792 7788 7788 1 GLDSYEEKEDK Unmodified 1311.583 0.58304073 1263 Q86UT8;E9PJ16 CCDC84 Coiled-coil domain-containing protein 84 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 2 54.536 49.998 2;3 0.025416 2 35722 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.013 29.895 1749800 0 132490 207650 0 0 1409600 2700 1263 2669 11793;11794;11795;11796 7789;7790 7789 2 GLDVEDVK Unmodified 873.44436 0.4443624 1361;629;853 P17844;E7ETL9;Q92841-1;Q92841;Q92841-2;Q92841-3;H3BLZ8;Q59F66 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 88.658 80.962 2 0.019592 1 55443 20150910_Q1_SA_NiHu_Masterprac_group10_B 80.219 37.095 24649000 1362100 4551300 1231600 651720 3104300 13748000 2701 853;1361;629 2670 11797;11798;11799;11800;11801;11802 7791 7791 1 GLEPSQSTAAKVPK Unmodified 1411.7671 0.76709352 588 G3V529;Q9GZR7;F5H4J5 DDX24 ATP-dependent RNA helicase DDX24 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 2 1 50.355 41.522 3 0.010381 1 33916 20150910_Q1_SA_NiHu_Masterprac_group13_C 50.897 1.4487 6455200 809640 1754400 2378600 0 1512600 0 2702 588 2671 11803;11804;11805;11806;11807 7792 7792 1 GLESTTLADK Unmodified 1033.5292 0.52915466 859 P21291;E9PND2;B3KVC9;E9PP21 CSRP1 Cysteine and glycine-rich protein 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 86.311 70.369 2 0.0026885 1 54297 20150910_Q1_SA_NiHu_Masterprac_group15_C 99.568 42.036 4585400 0 0 0 0 4585400 0 2703 859 2672 11808 7793 7793 1 GLESTTLADKDGEIYCK Unmodified 1898.8932 0.89315825 859 P21291;E9PND2;B3KVC9;E9PP21 CSRP1 Cysteine and glycine-rich protein 1 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 119.45 106.92 3 0.0014348 5 75520 20150910_Q1_SA_NiHu_Masterprac_group15_C 80.411 60.742 14701000 3373200 0 1091200 3226100 7010900 0 2704 859 2673 11809;11810;11811;11812 7794;7795;7796;7797;7798 7797 5 GLESTTLADKDGEIYCKGCYAK Unmodified 2478.1407 0.14067552 859 P21291;E9PND2;B3KVC9;E9PP21 CSRP1 Cysteine and glycine-rich protein 1 yes no 0 0 2 By MS/MS By matching By matching By MS/MS By matching By matching 2 1 1 1 1 1 119.31 109.02 3;4 1.087E-09 4 73229 20150910_Q1_SA_NiHu_Masterprac_group10_C 87.676 76.04 23994000 15092000 1224800 2156500 1817700 2616400 1086400 2705 859 2674 11813;11814;11815;11816;11817;11818;11819 7799;7800;7801;7802 7801 4 GLEVINDYHFR Unmodified 1361.6728 0.67279921 1155 Q16666-3;Q16666-2;Q16666;H3BLV7;E7EPR3;H3BM18;H3BVE6;Q6K0P9-6;Q6K0P9-5;Q6K0P9-4;Q6K0P9-3;Q6K0P9-2;Q6K0P9 IFI16;PYHIN1 Gamma-interferon-inducible protein 16;Pyrin and HIN domain-containing protein 1 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 132.42 132.42 3 0.0034768 1 85426 20150910_Q1_SA_NiHu_Masterprac_group13_B 78.342 51.635 4011300 0 0 0 4011300 0 0 2706 1155 2675 11820 7803 7803 1 GLGGSGGAGGPPGTPYELAK Unmodified 1741.8635 0.8635131 1608 Q9ULL5-3 PRR12 Proline-rich protein 12 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 126.79 124.01 2 0.0072229 2 79208 20150910_Q1_SA_NiHu_Masterprac_group10_B 43.326 33.181 2507600 0 762080 0 0 0 1745500 2707 1608 2676 11821;11822 7804;7805 7805 2 GLGHPPSSPLLK Unmodified 1201.6819 0.68190733 212 B7ZM82;B3KVH1;O95785 WIZ Protein Wiz yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 107.25 99.313 3 0.03559 1 65816 20150910_Q1_SA_NiHu_Masterprac_group13_B 43.501 34.29 12987000 0 1757500 2197000 1261400 3528400 4242300 2708 212 2677 11823;11824;11825;11826;11827 7806 7806 1 GLGLDESGLAK Unmodified 1058.5608 0.56078914 1629 Q9Y265;Q9Y265-2 RUVBL1 RuvB-like 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 118.8 109.39 2 0.0021961 8 77355 20150910_Q1_SA_NiHu_Masterprac_group15_C 88.596 52.278 74686000 16289000 13832000 8401400 6306500 16862000 12996000 2709 1629 2678 11828;11829;11830;11831;11832;11833 7807;7808;7809;7810;7811;7812;7813;7814 7812 7 GLGVGFGSGGGSSSSVK Unmodified 1438.7052 0.70522155 299 P13647;CON__P13647;E7EU87 KRT5 Keratin, type II cytoskeletal 5 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 110.87 102.83 2 0.00065679 1 67885 20150910_Q1_SA_NiHu_Masterprac_group13_B 72.428 49.89 5160000 0 603000 504240 2010600 1454100 588040 + 2710 299 2679 11834;11835;11836;11837;11838 7815 7815 1 GLHCPPPPGGPGAGK Unmodified 1397.6874 0.68740341 533 F8VZR5;F8VNP5;P28702;Q5STQ1;B7Z3E4 RXRB Retinoic acid receptor RXR-beta yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 60.76 57.767 3 0.0014539 2 41035 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.997 52.054 5293600 213190 974130 0 472930 0 3633300 2711 533 2680 11839;11840;11841;11842 7816;7817 7816 2 GLIDGVVEADLVEALQEFGPISYVVVMPK Oxidation (M) 3102.6199 0.61989051 838 P14866;B4DPK8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 134.97 121.94 3 3.5746E-29 4 81371 20150910_Q1_SA_NiHu_Masterprac_group10_C 83.879 73.38 56619000 36665000 8540600 7328500 0 4084700 0 2712 838 2681 11843;11844;11845;11846 7818;7819;7820;7821 7821 85 4 GLKDMGYGNWISKPQEEK Unmodified 2079.0095 0.0095254139 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 131.31 126.35 3;4 6.7631E-06 2 83740 20150910_Q1_SA_NiHu_Masterprac_group13_B 86.222 67.36 10261000 0 0 0 0 0 10261000 2713 352;968 2682 11847;11848 7822;7823 7822 2 GLLETTVQK Unmodified 987.56006 0.56006086 713 O43290;G3V1T2 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 97.517 89.896 2 0.007326 2 66175 20150910_Q1_SA_NiHu_Masterprac_group15_C 88.819 35.044 7628300 0 1289600 640640 520470 2732700 2444900 2714 713 2683 11849;11850;11851;11852;11853 7824;7825 7825 2 GLNSRLEATAASSVK Unmodified 1502.8053 0.80526994 1533 Q9NQW6;Q9NQW6-2;C9JJT6 ANLN Actin-binding protein anillin yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 106.07 95.915 3 1.9879E-05 3 65656 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.911 65.214 18317000 3127100 2299600 1399100 0 2150200 9341100 2715 1533 2684 11854;11855;11856;11857;11858 7826;7827;7828 7826 3 GLNSRLEATAASSVKTR Unmodified 1759.9541 0.95405945 1533 Q9NQW6;Q9NQW6-2;C9JJT6 ANLN Actin-binding protein anillin yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 101.82 93.353 3 0.0050268 6 69664 20150910_Q1_SA_NiHu_Masterprac_group13_C 58.635 58.635 16878000 5223100 5291400 2805300 0 0 3558300 2716 1533 2685 11859;11860;11861;11862;11863 7829;7830;7831;7832;7833;7834 7830 6 GLPFGCSK Unmodified 864.41637 0.41637351 322;970 D6RBM0;E9PCY7;P31943;G8JLB6;D6RIU0;D6RAM1;D6R9T0;D6RFM3;D6RIT2;D6RDU3;D6RJ04;D6RIH9;E5RGV0;E5RGH4;H0YAQ2;P55795 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H2, N-terminally processed no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 98.03 91.079 2 0.0066096 5 61358 20150910_Q1_SA_NiHu_Masterprac_group10_C 96.19 74.488 25596000 7244300 8152800 6926600 2627000 0 645490 2717 322;970 2686 11864;11865;11866;11867;11868;11869 7835;7836;7837;7838;7839 7838 5 GLPWQSSDQDVAR Unmodified 1457.6899 0.68990583 1498 Q9H6T0-2;Q9H6T0 ESRP2 Epithelial splicing regulatory protein 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 126.42 123.64 2 0.0070898 2 79146 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.595 31.841 8299300 0 1188800 0 0 0 7110500 2718 1498 2687 11870;11871 7840;7841 7841 2 GLPWSCSADEVQR Unmodified 1503.6776 0.67762659 322 D6RBM0;E9PCY7;P31943;G8JLB6;D6RIU0;D6RAM1;D6R9T0;D6RFM3;D6RIT2;D6RDU3;D6RJ04;D6RIH9;E7EQJ0;E5RGV0;E7EN40;D6RDL0;D6RF17;D6R9D3 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 131.19 121.69 2 8.172E-182 5 86026 20150910_Q1_SA_NiHu_Masterprac_group15_B 171.49 125.6 226320000 40702000 39133000 32660000 6497000 13145000 94185000 2719 322 2688 11872;11873;11874;11875;11876;11877 7842;7843;7844;7845;7846 7843 5 GLQTVHINENFAK Unmodified 1469.7627 0.76267685 583 Q13573;G3V3A4;G3V4X8 SNW1 SNW domain-containing protein 1 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 1 2 121.83 113.53 2;3 0.003651 4 77551 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.292 46.722 14139000 3215500 3029100 0 0 0 7894900 2720 583 2689 11878;11879;11880;11881;11882 7847;7848;7849;7850 7848 4 GLRRPHCTVEEGVQK Unmodified 1764.9053 0.90533511 115 B4DQ42;Q9HC62;C9IYB7 SENP2 Sentrin-specific protease 2 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 3 1 2 1 1 52.111 47.723 3;4 0.00066954 3 33560 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.54 45.213 11421000 0 4263600 1356000 980860 1216600 3604000 2721 115 2690 11883;11884;11885;11886;11887;11888;11889;11890 7851;7852;7853 7851 3 GLSEAAGQTAQMLER Unmodified 1560.7566 0.75660519 768 O95239;O95239-2 KIF4A Chromosome-associated kinesin KIF4A yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 132.33 129.55 2 1.051E-08 2 84934 20150910_Q1_SA_NiHu_Masterprac_group10_B 99.069 66.367 46532000 0 25148000 0 0 0 21384000 2722 768 2691 11891;11892 7854;7855 7855 1 GLSGPSGPGHMASR Unmodified 1309.6197 0.61971778 1097 Q14151 SAFB2 Scaffold attachment factor B2 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 63.661 57.343 3 0.004229 2 40470 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.569 42.98 4140300 0 731120 514810 0 0 2894400 2723 1097 2692 11893;11894;11895 7856;7857 7856 2 GLSNPSEVEVLR Unmodified 1298.683 0.68302954 533 F8VZR5;F8VNP5;P28702;Q5STQ1;E9PK95 RXRB Retinoic acid receptor RXR-beta yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 2 72.565 65.335 2 0.0087986 3 83625 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.161 36.485 6598600 0 754250 430420 0 979440 4434500 2724 533 2693 11896;11897;11898;11899;11900 7858;7859;7860 7859 3 GLSNPSEVEVLREK Unmodified 1555.8206 0.82058566 533 F8VZR5;F8VNP5;P28702;Q5STQ1;E9PK95 RXRB Retinoic acid receptor RXR-beta yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 118.41 108.29 2 0.03727 1 74319 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.622 30.635 3300900 0 525540 310610 0 507630 1957100 2725 533 2694 11901;11902;11903;11904 7861 7861 1 GLSQSALPYRR Unmodified 1246.6782 0.67821894 471 E9PS50;P62277 RPS13 40S ribosomal protein S13 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 92.026 83.054 3 0.01553 1 57087 20150910_Q1_SA_NiHu_Masterprac_group10_C 51.436 22.478 1618500 1618500 0 0 0 0 0 2726 471 2695 11905 7862 7862 1 GLTCESCHTTQSAQWYAWGPPNMQCR Unmodified 3125.3001 0.30006326 754 O94776;Q68DB1 MTA2;DKFZp686F2281 Metastasis-associated protein MTA2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 138.91 133.95 3 0.022218 1 92365 20150910_Q1_SA_NiHu_Masterprac_group15_B 30.499 28.395 5111600 0 0 0 0 0 5111600 2727 754 2696 11906 7863 7863 1 GLTDLSACK Unmodified 963.46953 0.46953129 692 O00567;Q5JXT2 NOP56 Nucleolar protein 56 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 86.023 80.057 2 0.014268 2 55074 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.264 6.9681 10095000 0 0 0 280190 3162000 6652700 2728 692 2697 11907;11908;11909 7864;7865 7864 2 GLTETGLYR Unmodified 1008.524 0.52400971 1479 Q9H0H5;H0YIK5 RACGAP1 Rac GTPase-activating protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 102.06 92.681 2 0.036278 1 62440 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.691 29.931 2308900 0 1096800 0 0 1212100 0 2729 1479 2698 11910;11911 7866 7866 1 GLTTTGNSSLNSTSNTK Unmodified 1681.8119 0.81187146 1403 Q96KR1;B5MEH6 ZFR Zinc finger RNA-binding protein yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 69.137 61.876 2 1.6389E-44 6 43970 20150910_Q1_SA_NiHu_Masterprac_group10_C 114.28 114.28 118240000 7341400 17245000 20050000 7689200 28285000 37627000 2730 1403 2699 11912;11913;11914;11915;11916;11917 7867;7868;7869;7870;7871;7872 7872 6 GLVQALQTK Unmodified 956.56548 0.56548059 934 P49327;F5H0D4 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 102.6 100.27 2 0.012404 1 68228 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.525 24.351 3864800 0 824030 0 0 0 3040800 2731 934 2700 11918;11919 7873 7873 1 GLVRECLAETER Unmodified 1431.714 0.71401209 495 F5GYA4;O14519 CDK2AP1 Cyclin-dependent kinase 2-associated protein 1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 92.512 85.493 3 0.0018619 3 58539 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.85 62.111 10605000 0 1648500 2021100 0 0 6935000 2732 495 2701 11920;11921;11922 7874;7875;7876 7875 3 GLVRECLAETERNAR Unmodified 1772.8952 0.89516436 495 F5GYA4;O14519 CDK2AP1 Cyclin-dependent kinase 2-associated protein 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 88.116 86.259 3 0.011702 1 59103 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.98 43.487 4613800 0 0 0 0 0 4613800 2733 495 2702 11923 7877 7877 1 GLVYSSNFQNVK Unmodified 1354.6881 0.68811492 255 C9JJU9;Q96P11-2;G3V0G9;Q96P11;Q96P11-4 NSUN5 Putative methyltransferase NSUN5 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 122.03 117.36 2 0.0087153 1 79819 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.255 43.044 1353100 0 0 0 0 0 1353100 2734 255 2703 11924 7878 7878 1 GLYAAAAGVLAGVESR Acetyl (Protein N-term) 1545.8151 0.81510635 255 C9JJU9;Q96P11-2;G3V0G9;Q96P11;Q96P11-4 NSUN5 Putative methyltransferase NSUN5 yes no 1 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 134.41 124.08 2 2.8393E-19 2 89746 20150910_Q1_SA_NiHu_Masterprac_group15_B 106.6 88.974 36781000 30091000 0 0 0 0 6689200 2735 255 2704 11925;11926 7879;7880 7879 2 GMATCFAYGQTGSGK Unmodified 1534.6544 0.65444831 403;686 O00139-1;E9PB70;O00139;O00139-4;E9PD67;Q8N4N8;O00139-2 KIF2A;KIF2B Kinesin-like protein KIF2A;Kinesin-like protein KIF2B no no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 108.16 101.12 2 0.0026215 2 68845 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.861 46.638 6730400 487540 1267200 0 181380 1259300 3535000 2736 403;686 2705 11927;11928;11929;11930;11931 7881;7882 7881 2 GMGTVEGGDQSNPK Unmodified 1375.6038 0.60379294 1082;383 Q13428-7;E7ETY2;Q13428-6;H0YA99;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 49.286 43.579 2 1.9822E-228 8 36191 20150910_Q1_SA_NiHu_Masterprac_group15_C 173.59 154.46 10753000 1595300 1210900 1145600 662790 2713500 3425400 2737 383;1082 2706 11932;11933;11934;11935;11936;11937 7883;7884;7885;7886;7887;7888;7889;7890 7887 8 GMGTVEGGDQSNPKSK Unmodified 1590.7308 0.73078437 1082;383 Q13428-7;E7ETY2;Q13428-6;H0YA99;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 38.946 34.141 3 1.1819E-27 6 27392 20150910_Q1_SA_NiHu_Masterprac_group13_C 112.62 80.146 19113000 3625700 3125800 4698700 1876700 2684100 3102000 2738 383;1082 2707 11938;11939;11940;11941;11942;11943 7891;7892;7893;7894;7895;7896 7892 6 GMSDDPRYNQMK Unmodified 1440.6126 0.61258349 952 P51532-5;P51532-2;P51532-3;P51532-4;P51532;Q9HBD4;F5H0X5 SMARCA4 Transcription activator BRG1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 69.186 60.533 2 0.033553 1 42431 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.551 28.997 3042800 257700 277520 536370 0 745260 1226000 2739 952 2708 11944;11945;11946;11947;11948 7897 7897 1 GMYYGRDVNVCR Unmodified 1488.6602 0.66020239 1275 Q8IUF8-4;Q8IUF8;Q8IUF8-2;D6RCB6 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 93.685 85.806 3 0.0071518 2 58285 20150910_Q1_SA_NiHu_Masterprac_group13_B 62.166 51.813 24965000 251000 2964800 2983400 3528600 6711300 8525800 2740 1275 2709 11949;11950;11951;11952;11953;11954 7898;7899 7898 2 GNFCPLCDKCYDDDDYESK Unmodified 2399.8981 0.89806199 464 Q03164-2;Q03164;E9PQG7;H7BYJ6 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 130.77 115.08 3 0.00089914 1 76388 20150910_Q1_SA_NiHu_Masterprac_group10_C 61.87 60.113 4286600 4286600 0 0 0 0 0 2741 464 2710 11955 7900 7900 1 GNFGGSFAGSFGGAGGHAPGVARK Unmodified 2162.0406 0.040583042 956 P52272-2;P52272;Q59ES8;F5H7Z1 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 2 1 1 130.62 113.84 3;4 1.8013E-07 3 76452 20150910_Q1_SA_NiHu_Masterprac_group10_C 61.276 44.427 19672000 9743700 0 1617800 0 8310300 0 2742 956 2711 11956;11957;11958;11959 7901;7902;7903 7903 3 GNIAQMYHAPGKK Unmodified 1413.7187 0.71870354 1134 Q15269 PWP2 Periodic tryptophan protein 2 homolog yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 2 1 77.096 64.964 3 0.0011548 4 45300 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.728 54.808 5180300 0 0 735140 0 1623500 2821700 2743 1134 2712 11960;11961;11962;11963 7904;7905;7906;7907 7906 4 GNIWSAEK Unmodified 903.44503 0.4450311 1533 Q9NQW6;Q9NQW6-2 ANLN Actin-binding protein anillin yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 82.829 77.093 2 0.015392 2 53192 20150910_Q1_SA_NiHu_Masterprac_group10_B 85.161 48.975 9151000 768060 1652100 0 436780 1300600 4993500 2744 1533 2713 11964;11965;11966;11967;11968 7908;7909 7909 2 GNIWSAEKGGNSK Unmodified 1346.6579 0.65787742 1533 Q9NQW6;Q9NQW6-2 ANLN Actin-binding protein anillin yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 2 72.141 57.153 2;3 0.022254 2 46620 20150910_Q1_SA_NiHu_Masterprac_group13_C 57.034 39.44 1966000 0 0 1966000 0 0 0 2745 1533 2714 11969;11970 7910;7911 7910 2 GNLGAGNGNLQGPR Unmodified 1323.6644 0.66435979 52 P43243;A8MXP9;D6REM6;D6R991;H0Y8T4;B3KM87;P43243-2;D6RAM9;D6RAY2;D6RBI2;D6RE02;D6RIA2 MATR3 Matrin-3 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 74.894 67.614 2 0.0014867 4 47282 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.03 54.787 18233000 0 2246200 1688500 1162900 3138100 9997300 2746 52 2715 11971;11972;11973;11974;11975 7912;7913;7914;7915 7915 4 GNLGAGNGNLQGPRHMQK Unmodified 1847.9173 0.91729678 52 P43243;A8MXP9;D6REM6;D6R991;H0Y8T4;B3KM87;P43243-2;D6RAM9;D6RAY2;D6RBI2;D6RE02;D6RIA2 MATR3 Matrin-3 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 64.85 57.951 3 0.00059475 3 40865 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.197 70.197 8893600 0 1391900 244670 632230 2281900 4343000 2747 52 2716 11976;11977;11978;11979;11980 7916;7917;7918 7916 3 GNLYSFGCPEYGQLGHNSDGK Unmodified 2298.9964 0.99639455 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 132.98 117.29 3 0.0089587 1 78760 20150910_Q1_SA_NiHu_Masterprac_group10_C 40.384 27.713 5315800 5315800 0 0 0 0 0 2748 1575 2717 11981 7919 7919 1 GNTAEGCVHETQEKQK Unmodified 1814.8217 0.82172464 682 I3L1L3;Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 29.38 25.143 3 0.0095787 1 20718 20150910_Q1_SA_NiHu_Masterprac_group13_C 45.722 39.189 1621000 0 0 870490 141920 142340 466220 2749 682 2718 11982;11983;11984;11985 7920 7920 1 GNTLKNIEKECNAK Unmodified 1617.8145 0.81445442 1141 Q15637-6;Q15637-4;Q15637-3;Q15637-2;Q15637 SF1 Splicing factor 1 no no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 54.295 54.295 3 0.012107 1 38285 20150910_Q1_SA_NiHu_Masterprac_group13_B 58.595 44.511 2287400 0 0 0 2287400 0 0 2750 1141 2719 11986 7921 7921 1 GNVFSSPTAAGTPNKETAGLK Unmodified 2046.0382 0.038183005 396 Q05682-5;E9PGZ1;Q05682-4;F5H1Z9;E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;E7EUR9 CALD1 Caldesmon yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 115.21 105.16 3 2.6763E-09 2 69297 20150910_Q1_SA_NiHu_Masterprac_group10_B 85.087 75.709 8938300 0 2516400 2088100 0 1454400 2879300 2751 396 2720 11987;11988;11989;11990 7922;7923 7923 2 GPAPAGEQLR Unmodified 994.51959 0.51959303 1497 Q9H6R4-4;Q9H6R4;Q9H6R4-2;G8JLK7;Q9H6R4-3 NOL6 Nucleolar protein 6 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 53.27 51.982 2 0.022964 1 36969 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.161 35.819 2761800 0 794670 0 219520 0 1747700 2752 1497 2721 11991;11992;11993 7924 7924 1 GPAPAGEQLRGATGEPEVMEPALEGTGK Oxidation (M) 2764.3338 0.33377268 1497 Q9H6R4-4;Q9H6R4;Q9H6R4-2;G8JLK7;Q9H6R4-3 NOL6 Nucleolar protein 6 yes no 0 1 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 128.31 122.42 3 4.4782E-48 3 81350 20150910_Q1_SA_NiHu_Masterprac_group13_C 97.059 81.346 38520000 0 1323500 16756000 1079600 0 19361000 2753 1497 2722 11994;11995;11996;11997 7925;7926;7927 7925 171 3 GPAPAGEQLRGATGEPEVMEPALEGTGK Unmodified 2748.3389 0.33885806 1497 Q9H6R4-4;Q9H6R4;Q9H6R4-2;G8JLK7;Q9H6R4-3 NOL6 Nucleolar protein 6 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 131.66 131.35 3 3.3799E-37 1 84474 20150910_Q1_SA_NiHu_Masterprac_group10_B 86.039 75.139 167530000 0 112090000 0 55440000 0 0 2754 1497 2722 11998;11999 7928 7928 0 GPAPAGEQLRGATGEPEVMEPALEGTGKEGK Unmodified 3062.4979 0.49787789 1497 Q9H6R4-4;Q9H6R4;Q9H6R4-2;G8JLK7;Q9H6R4-3 NOL6 Nucleolar protein 6 yes no 0 0 2 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 130.74 125.31 4 1.8949E-27 2 77167 20150910_Q1_SA_NiHu_Masterprac_group10_C 74.392 64.642 36106000 22055000 1951800 0 12099000 0 0 2755 1497 2723 12000;12001;12002 7929;7930 7930 2 GPASVPSVGK Unmodified 897.49198 0.4919813 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;H0YAB7;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 2 1 70.905 61.38 2 0.024284 2 48472 20150910_Q1_SA_NiHu_Masterprac_group15_C 60.064 31.855 7823500 0 0 1298300 866200 5494600 164410 2756 383;1082 2724 12003;12004;12005;12006;12007 7931;7932 7932 2 GPLEPSEPAVVAAAR Unmodified 1462.778 0.77799256 594 G5E9E2;Q5J9I4;P29372-2;P29372;A2IDA3 MPG DNA-3-methyladenine glycosylase yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 129.67 120.17 2 2.0509E-70 5 84983 20150910_Q1_SA_NiHu_Masterprac_group15_B 134.06 115.42 151020000 27475000 10464000 23024000 2971100 1937900 85144000 2757 594 2725 12008;12009;12010;12011;12012;12013 7933;7934;7935;7936;7937 7934 5 GPLLVSTESHPVK Unmodified 1362.7507 0.75071518 1643 Q9Y3A4 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 97.13 87.672 3 0.0088816 1 60182 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.871 32.55 3624600 433860 0 0 0 257930 2932800 2758 1643 2726 12014;12015;12016 7938 7938 1 GPPDFSSDEEREPTPVLGSGAAAAGR Unmodified 2569.2045 0.20447307 913;914 P42166;P42167;P42167-2;G5E972 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 131.63 118.75 3 3.8301E-05 3 86129 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.152 47.772 14701000 3932900 0 4318100 0 0 6450300 2759 913;914 2727 12017;12018;12019 7939;7940;7941 7940 3 GPSSVEDIKAK Unmodified 1129.5979 0.59790293 801 P06748-2;P06748;P06748-3 NPM1 Nucleophosmin yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 54.954 48.086 2 2.112E-07 2 39279 20150910_Q1_SA_NiHu_Masterprac_group13_C 108.9 74.208 9808900 2520400 0 1709200 484870 1963600 3130800 2760 801 2728 12020;12021;12022;12023;12024 7942;7943 7942 2 GQEEVEMPSKEK Unmodified 1389.6446 0.64459513 1112 Q14690 PDCD11 Protein RRP5 homolog yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 58.32 52.065 2 0.030494 2 37327 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.52 27.381 2361200 340500 540430 414530 0 0 1065800 2761 1112 2729 12025;12026;12027;12028 7944;7945 7945 2 GQGALDPNGTRVR Unmodified 1339.6957 0.69565991 1519 Q9HC52 CBX8 Chromobox protein homolog 8 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 60.149 53.489 3 0.0024035 1 38216 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.179 44.75 7761500 562200 1391500 920080 356010 1208800 3322800 2762 1519 2730 12029;12030;12031;12032;12033;12034 7946 7946 1 GQNLLQTQDHAKAPK Unmodified 1647.8693 0.86926718 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 2 2 65.357 58.181 3;4 1.627E-08 16 46845 20150910_Q1_SA_NiHu_Masterprac_group15_C 98 69.639 79923000 14023000 10558000 9836900 4609700 16734000 24161000 2763 919;920 2731 12035;12036;12037;12038;12039;12040;12041;12042;12043;12044;12045;12046;12047;12048 7947;7948;7949;7950;7951;7952;7953;7954;7955;7956;7957;7958;7959;7960;7961;7962 7955 16 GQPIYIQFSNHK Unmodified 1430.7306 0.73064844 882 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 123.22 114.29 2;3 7.57E-118 9 81183 20150910_Q1_SA_NiHu_Masterprac_group13_C 158.06 123.8 102690000 14021000 27404000 22110000 7198100 8108700 23844000 2764 882 2732 12049;12050;12051;12052;12053;12054;12055;12056;12057;12058;12059 7963;7964;7965;7966;7967;7968;7969;7970;7971 7964 9 GQPIYIQFSNHKELK Unmodified 1800.9523 0.95226853 882 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 2 1 2 119.09 116.9 3;4 0.001275 5 75576 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.258 53.624 6373900 0 2282400 0 499330 0 3592200 2765 882 2733 12060;12061;12062;12063;12064 7972;7973;7974;7975;7976 7976 5 GQPRGGVEEGPTVLRK Unmodified 1678.9115 0.91146635 793 P05089-3;P05089;P05089-2 ARG1 Arginase-1 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 71.894 64.55 3 0.009018 2 45009 20150910_Q1_SA_NiHu_Masterprac_group13_B 62.69 44.728 6007400 627500 237890 1406400 765060 617850 2352600 2766 793 2734 12065;12066;12067;12068;12069;12070 7977;7978 7977 2 GQSINVHTPNSQK Unmodified 1408.7059 0.70589025 1271 Q86Y07-4;Q86Y07-3;Q86Y07;Q86Y07-5;Q86Y07-2;E9PFA9 VRK2 Serine/threonine-protein kinase VRK2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 57.916 50.408 3 0.038239 1 36095 20150910_Q1_SA_NiHu_Masterprac_group10_B 40.373 17.255 3023500 0 1143300 813470 208960 857790 0 2767 1271 2735 12071;12072;12073;12074 7979 7979 1 GQSPAGDGSPEPPTPR Unmodified 1548.7168 0.71684887 1497 Q9H6R4-4;Q9H6R4;Q9H6R4-2;G8JLK7;Q9H6R4-3 NOL6 Nucleolar protein 6 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 75.974 66.899 2 0.01354 1 46619 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.37 32.111 3075100 0 790110 291780 0 533100 1460100 2768 1497 2736 12075;12076;12077;12078 7980 7980 1 GQTVNEDSMDVK Unmodified 1321.582 0.58199487 149 B4DZR9;Q9UQR0 SCML2 Sex comb on midleg-like protein 2 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 71.876 64.414 2 3.9679E-12 7 50338 20150910_Q1_SA_NiHu_Masterprac_group15_C 110.31 93.834 15275000 2046200 1615600 2591100 1340500 2468100 5213800 2769 149 2737 12079;12080;12081;12082;12083;12084;12085 7981;7982;7983;7984;7985;7986;7987 7984 6 GQTVNEDSMDVKK Unmodified 1449.677 0.67695789 149 B4DZR9;Q9UQR0 SCML2 Sex comb on midleg-like protein 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 57.669 51.177 2;3 1.4381E-09 8 36470 20150910_Q1_SA_NiHu_Masterprac_group15_B 104.17 73.026 13281000 1586400 1290000 2633600 1560100 2432700 3778500 2770 149 2738 12086;12087;12088;12089;12090;12091;12092;12093;12094;12095;12096;12097 7988;7989;7990;7991;7992;7993;7994;7995 7990 8 GQWDCSVCCVQNESSSLK Unmodified 2142.8769 0.87687304 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 130.57 128.72 2 1.4195E-155 2 85933 20150910_Q1_SA_NiHu_Masterprac_group15_B 149.47 128.03 18975000 0 4850900 0 2697700 0 11426000 2771 945 2739 12098;12099;12100 7996;7997 7996 2 GQYHTLQAGFSSR Unmodified 1450.6953 0.69532556 1650 Q9Y446;E9PK71 PKP3 Plakophilin-3 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 90.388 82.908 3 0.0024239 5 56861 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.374 48.873 11015000 0 1907600 1394300 988720 1614300 5109700 2772 1650 2740 12101;12102;12103;12104;12105 7998;7999;8000;8001;8002 7999 5 GRDVESVQTPSK Unmodified 1301.6575 0.65754307 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 43.558 42.437 3 0.00011429 4 30412 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.337 56.648 1962300 0 712410 0 186230 0 1063700 2773 919 2741 12106;12107;12108 8003;8004;8005;8006 8004 4 GRFPESSAVQSSSFERR Unmodified 1925.9344 0.93438664 1554 Q9NWH9;H7C3F4;A8K5V8;H0YMM0 SLTM SAFB-like transcription modulator yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 94.205 90.21 4 0.0021092 1 61489 20150910_Q1_SA_NiHu_Masterprac_group10_C 53.395 35.5 4853700 2173900 1122900 0 1556900 0 0 2774 1554 2742 12109;12110;12111 8007 8007 1 GRGGGGGGFRGFSSGSAVVSGGSR Unmodified 2112.0209 0.020910232 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 97.131 91.716 4 0.035378 1 68765 20150910_Q1_SA_NiHu_Masterprac_group13_C 30 20.765 6625600 0 960460 2420700 1491300 0 1753100 + 2775 302 2743 12112;12113;12114;12115 8008 8008 1 GRGGPPGQFHDNANGGQNGTVQEIMIPAGK Unmodified 3003.4369 0.43694939 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 2 130.13 119.52 3;4 3.6193E-77 9 76774 20150910_Q1_SA_NiHu_Masterprac_group10_C 108.3 99.127 651260000 116600000 25493000 109570000 15367000 27674000 356550000 2776 1366 2744 12116;12117;12118;12119;12120;12121;12122;12123;12124 8009;8010;8011;8012;8013;8014;8015;8016;8017 8017 9 GRGGPPGQFHDNANGGQNGTVQEIMIPAGK Oxidation (M) 3019.4319 0.43186401 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 1 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 114.78 112.93 4 2.9357E-38 1 77113 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.618 91.618 21871000 0 5641800 0 3891100 0 12338000 2777 1366 2744 12125;12126;12127 8018 8018 156 1 GRIVETEAYLGPEDEAAHSR Unmodified 2199.0556 0.055623984 594 G5E9E2;Q5J9I4;P29372-2;P29372;A2IDA3 MPG DNA-3-methyladenine glycosylase yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 2 112.06 103.34 3;4 0.00019382 4 70658 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.377 47.231 6068300 1041500 0 0 0 0 5026800 2778 594 2745 12128;12129;12130;12131;12132 8019;8020;8021;8022 8019 4 GRIVETEAYLGPEDEAAHSRGGR Unmodified 2469.1997 0.19966246 594 G5E9E2;Q5J9I4;P29372-2;P29372;A2IDA3 MPG DNA-3-methyladenine glycosylase yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 105.47 95.472 4 0.00043541 3 65333 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.857 47.758 5164200 0 0 0 0 920570 4243600 2779 594 2746 12133;12134 8023;8024;8025 8025 3 GRRDLAGAPPGEVVGCFTPQSR Unmodified 2326.16 0.16004625 1650 Q9Y446 PKP3 Plakophilin-3 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 130.22 125.25 4 4.2527E-06 1 84974 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.986 57.32 3831400 0 0 0 0 0 3831400 2780 1650 2747 12135 8026 8026 1 GRSSFYPDGGDQETAK Unmodified 1713.7594 0.75944196 1563;452 Q9NYF8-2;Q9NYF8;Q9NYF8-4;E9PK09;E9PQN2;E9PKI6;E9PJA7;H0YF00;Q9NYF8-3;E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 74.243 66.723 2;3 1.5131E-05 7 46624 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.951 88.951 58479000 6801100 10842000 9433900 11654000 6988900 12758000 2781 1563;452 2748 12136;12137;12138;12139;12140;12141;12142 8027;8028;8029;8030;8031;8032;8033 8030 7 GSAFAIGSDGLCCQSR Unmodified 1684.7297 0.72973851 1348 Q92499 DDX1 ATP-dependent RNA helicase DDX1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 130.71 127.92 2 0.0057343 2 82923 20150910_Q1_SA_NiHu_Masterprac_group10_B 48.623 39.053 4028100 0 1909800 0 0 0 2118200 2782 1348 2749 12143;12144 8034;8035 8035 2 GSALGTPAAAEPVTPTSK Unmodified 1653.8574 0.85736509 666 H7C1H8;P00519;P00519-2 ABL1 Tyrosine-protein kinase ABL1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 106.12 98.664 2 0.0046292 2 67114 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.222 25.408 2882900 0 871670 617510 0 0 1393700 2783 666 2750 12145;12146;12147 8036;8037 8036 2 GSATTPRGVLHTFSPSPK Unmodified 1838.9639 0.96389585 170 Q86YP4;B5MC40;Q86YP4-2;B4DKZ7;F5H7D9;H7C3H1 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 109.22 101.7 4 0.019654 1 67052 20150910_Q1_SA_NiHu_Masterprac_group10_B 38.996 27.897 18324000 0 5179800 5816600 0 0 7327400 2784 170 2751 12148;12149;12150 8038 8038 1 GSAVATSHFEVGNTCPSEFPSK Unmodified 2308.043 0.043010387 1353 Q92576-2;Q92576 PHF3 PHD finger protein 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 1 127.2 125.66 3 6.9804E-134 4 84848 20150910_Q1_SA_NiHu_Masterprac_group15_B 138.04 104.68 17360000 0 1700600 0 582900 0 15077000 2785 1353 2752 12151;12152;12153;12154 8039;8040;8041;8042 8040 4 GSAYGLSGADSYK Unmodified 1274.5779 0.57789577 620 Q59HE6;H0YGC0;P52756 RBM5 RNA-binding protein 5 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 95.798 88.152 2 0.032596 1 60170 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.761 27.383 6359900 992170 1320800 0 0 1370700 2676200 2786 620 2753 12155;12156;12157;12158 8043 8043 1 GSAYGLSGADSYKDAVRK Unmodified 1843.9064 0.90644055 620 Q59HE6;H0YGC0;P52756 RBM5 RNA-binding protein 5 yes no 0 0 2 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 100.58 91.007 3 0.010081 2 68209 20150910_Q1_SA_NiHu_Masterprac_group13_C 50.252 33.678 10723000 0 2895900 2438000 0 2114600 3274000 2787 620 2754 12159;12160;12161;12162 8044;8045 8044 2 GSAYLEAGGTK Unmodified 1052.5138 0.51383895 1185 Q5RKV6 EXOSC6 Exosome complex component MTR3 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 57.213 55.892 2 0.0069874 2 39662 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.261 46.48 1644300 0 876200 0 239860 0 528210 2788 1185 2755 12163;12164;12165 8046;8047 8047 2 GSDRDGGADGMSAECECNIK Unmodified 2127.8256 0.82556575 1033 Q02413 DSG1 Desmoglein-1 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 76.94 67.239 3 0.016156 1 53848 20150910_Q1_SA_NiHu_Masterprac_group13_C 38.736 38.736 1758800 0 828470 930280 0 0 0 2789 1033 2756 12166;12167 8048 8048 1 GSEFMFEKAPAHHPAAISTAK Unmodified 2226.0892 0.089172718 414 Q5JTH9-2;E9PCK7;Q5JTH9 RRP12 RRP12-like protein yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 2 106.69 100.39 3;4 0.013498 3 66423 20150910_Q1_SA_NiHu_Masterprac_group10_B 39.349 21.592 15935000 0 2058200 0 0 4013400 9863100 2790 414 2757 12168;12169;12170;12171 8049;8050;8051 8051 3 GSEHQAIVQHLEK Unmodified 1474.7528 0.75284044 1112 Q14690;F5H7X0 PDCD11 Protein RRP5 homolog yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 68.377 59.252 3 0.0018602 1 47257 20150910_Q1_SA_NiHu_Masterprac_group15_C 67.019 45.077 2369600 0 884030 0 0 1485600 0 2791 1112 2758 12172;12173 8052 8052 1 GSFSDTGLGDGK Unmodified 1139.5095 0.50948185 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 86.953 75.072 2 0.018667 1 58445 20150910_Q1_SA_NiHu_Masterprac_group13_C 52.576 41.921 6087100 0 1406400 2237300 0 2443500 0 2792 1639 2759 12174;12175;12176 8053 8053 1 GSFSDTGLGDGKMK Unmodified 1398.6449 0.64492948 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 3 2 91.352 82.905 2;3 0.0010705 9 61731 20150910_Q1_SA_NiHu_Masterprac_group15_C 85.271 50.311 50454000 8244900 3932800 9139500 7699900 9849000 11588000 2793 1639 2760 12177;12178;12179;12180;12181;12182;12183;12184;12185;12186;12187;12188;12189;12190 8054;8055;8056;8057;8058;8059;8060;8061;8062 8060 9 GSFVNGVFEVHKK Unmodified 1446.7619 0.76194857 1155 Q16666-3;Q16666-2;Q16666;H3BLV7;E7EPR3 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 118.19 108.09 2;3 0.013387 3 78322 20150910_Q1_SA_NiHu_Masterprac_group13_C 46.069 21.717 4575700 0 898200 627770 0 1923300 1126500 2794 1155 2761 12191;12192;12193;12194 8063;8064;8065 8063 3 GSGGLGGACGGAGFGSR Unmodified 1423.6263 0.62625972 287;788 P02538;CON__P02538;P04259;CON__P04259;F5H6G5 KRT6A;KRT6B Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B no no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 1 1 1 1 1 90.375 82.497 2 2.511E-58 3 57050 20150910_Q1_SA_NiHu_Masterprac_group10_C 123.08 91.731 57368000 6392200 8384700 5501900 19501000 10988000 6600500 + 2795 287;788 2762 12195;12196;12197;12198;12199;12200;12201 8066;8067;8068 8068 3 GSGGLGGACGGAGFGSRSLYGLGGSK Unmodified 2286.0811 0.081127228 287;788 P02538;CON__P02538;P04259;CON__P04259;F5H6G5 KRT6A;KRT6B Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B no no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 132 132 3 5.0852E-29 1 85003 20150910_Q1_SA_NiHu_Masterprac_group13_B 93.416 80.083 12667000 0 0 0 12667000 0 0 + 2796 287;788 2763 12202 8069 8069 1 GSGIFDESTPVQTR Unmodified 1492.7158 0.71578623 98 Q9H910;B4DLH4;H3BU16;Q9H910-2;A6NGP5;H3BMV3;B4DL85;H3BMT0;H3BTV5 HN1L Hematological and neurological expressed 1-like protein yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 2 1 119.76 117.7 2 0.0056126 1 76069 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.66 15.185 3840100 0 2792600 0 0 0 1047600 2797 98 2764 12203;12204;12205 8070 8070 1 GSGSGQSPSSGQHGTGFGR Unmodified 1746.767 0.76698696 308 Q86YZ3;CON__Q86YZ3 HRNR Hornerin yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 42.917 38.973 3 0.019452 1 27658 20150910_Q1_SA_NiHu_Masterprac_group15_B 36.127 24.167 3725600 0 0 2141000 685550 0 899040 + 2798 308 2765 12206;12207;12208 8071 8071 1 GSKDHNIRAQEPESGLSEETQVK Unmodified 2538.231 0.23102217 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 83.693 76.115 4 0.0044044 4 57596 20150910_Q1_SA_NiHu_Masterprac_group15_C 44.054 29.164 48032000 11264000 5889300 9724600 6264900 9938900 4950400 2799 1012 2766 12209;12210;12211;12212;12213;12214 8072;8073;8074;8075 8074 4 GSKPGGVGTGLGGSSGTETLEK Unmodified 1974.9858 0.98581308 517 F5H4P2;Q6GQQ9 OTUD7B OTU domain-containing protein 7B yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 89.83 84.541 3 0.0036495 1 64411 20150910_Q1_SA_NiHu_Masterprac_group13_C 46.971 36.11 7570400 0 2185800 1734400 1207700 0 2442500 2800 517 2767 12215;12216;12217;12218 8076 8076 1 GSLEEAEAER Unmodified 1089.4938 0.49383179 1533 Q9NQW6;Q9NQW6-2;H7C1K5 ANLN Actin-binding protein anillin yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 63.542 56.666 2 0.011321 2 45376 20150910_Q1_SA_NiHu_Masterprac_group15_C 71.221 23.515 9388400 540900 1872600 543070 286260 1461600 4684000 2801 1533 2768 12219;12220;12221;12222;12223;12224 8077;8078 8077 2 GSLGGGFSSGGFSGGSFSR Unmodified 1706.7649 0.76486169 298 P13645;CON__P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 133.02 125.2 2 0 5 85813 20150910_Q1_SA_NiHu_Masterprac_group13_B 183.71 174.17 491580000 27038000 193790000 0 123580000 9614500 137560000 + 2802 298 2769 12225;12226;12227;12228;12229 8079;8080;8081;8082;8083 8079 5 GSLGQGTAPVLPGKTGPTVTQVK Unmodified 2192.2165 0.21648172 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 129.14 124.17 3 0.016233 1 83951 20150910_Q1_SA_NiHu_Masterprac_group15_B 35.195 9.3187 2079000 0 0 0 0 0 2079000 2803 383;1082 2770 12230 8084 8084 1 GSLPDTQPSQGPSTPK Unmodified 1595.7791 0.77911477 675 H9KV46;Q86Y91;Q86Y91-2;Q86Y91-3;Q86Y91-4 KIF18B Kinesin-like protein KIF18B yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 82.757 75.377 2 0.0052374 3 52036 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.621 30.125 10129000 0 1389900 947190 563880 1872700 5355000 2804 675 2771 12231;12232;12233;12234;12235 8085;8086;8087 8086 3 GSNLDAPEPYRIGR Unmodified 1543.7743 0.77430417 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 112.04 102.96 3 0.0033796 2 70253 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.796 46.611 20118000 1085400 2175100 0 0 3782100 13076000 2805 487 2772 12236;12237;12238;12239 8088;8089 8088 2 GSPDGSHPVVVAPYNGGPPRTCPK Unmodified 2445.1859 0.18592665 717 O43474-4;O43474-1;O43474 KLF4 Krueppel-like factor 4 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 102.98 95.159 4 0.0039802 2 65246 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.558 37.719 19430000 0 2641700 2245900 2126800 5203200 7212200 2806 717 2773 12240;12241;12242;12243;12244 8090;8091 8090 2 GSPDGSLQTGKPSAPK Unmodified 1525.7736 0.77363546 242 E7EV54;Q8IZL8;I3L3A8;C9JFV4;Q8IZL8-2;F8WDZ1 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 60.701 54.533 3 0.004993 1 44255 20150910_Q1_SA_NiHu_Masterprac_group15_C 50.305 39.575 4722600 0 1394300 0 0 1485300 1843000 2807 242 2774 12245;12246;12247 8092 8092 1 GSPEEPVVGCPLGQRQPCRK Unmodified 2250.0998 0.09975418 1161 Q2TAK8;Q2TAK8-2 MUM1 PWWP domain-containing protein MUM1 yes no 0 0 2 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 95.545 87.582 4 0.012834 2 59210 20150910_Q1_SA_NiHu_Masterprac_group10_B 39.348 32.298 20167000 1689800 3408300 2883300 1576500 1885500 8723300 2808 1161 2775 12248;12249;12250;12251;12252;12253 8093;8094 8093 2 GSPHPGVGVPTYYNHPEALK Unmodified 2119.0487 0.048688112 1231 Q6PJG2;F6RU81 ELMSAN1 ELM2 and SANT domain-containing protein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 2 121.19 111.24 3;4 0.00011802 7 72488 20150910_Q1_SA_NiHu_Masterprac_group10_B 73.735 58.214 24299000 4786200 1077800 2522200 0 0 15912000 2809 1231 2776 12254;12255;12256;12257;12258;12259 8095;8096;8097;8098;8099;8100;8101 8099 6 GSPHPGVGVPTYYNHPEALKR Unmodified 2275.1498 0.14979914 1231 Q6PJG2;F6RU81 ELMSAN1 ELM2 and SANT domain-containing protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 106.51 100.56 4 0.039429 1 68591 20150910_Q1_SA_NiHu_Masterprac_group15_B 28.325 7.7598 4609200 642080 1180500 0 0 0 2786600 2810 1231 2777 12260;12261;12262 8102 8102 1 GSPRPQAPKANGTSALTAQNGK Unmodified 2150.1192 0.11922729 1120 Q14978;Q14978-3;Q14978-2 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 69.289 62.32 3 0.030015 1 49187 20150910_Q1_SA_NiHu_Masterprac_group15_C 40.137 24.504 3653200 695180 924180 0 0 1183300 850510 2811 1120 2778 12263;12264;12265;12266 8103 8103 1 GSPTGGAQLLK Unmodified 1027.5662 0.56620887 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 84.812 76.342 2 0.029525 1 53345 20150910_Q1_SA_NiHu_Masterprac_group10_C 64.64 22.244 2333900 2333900 0 0 0 0 0 2812 1111 2779 12267 8104 8104 0 GSPVNALQNK Unmodified 1026.5458 0.54580778 1330 Q8NI27 THOC2 THO complex subunit 2 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1 69.748 62.372 2 0.0034562 4 50535 20150910_Q1_SA_NiHu_Masterprac_group13_C 89.029 62.965 16179000 2878500 1823000 2931800 1452700 2761500 4331700 2813 1330 2780 12268;12269;12270;12271;12272;12273;12274 8105;8106;8107;8108 8106 4 GSQITQQSTNQSRNPATTNQTEFERVF Unmodified 3068.4548 0.45476753 949 P50750;P50750-2 CDK9 Cyclin-dependent kinase 9 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 132.29 122.99 3 0.0024453 2 83469 20150910_Q1_SA_NiHu_Masterprac_group13_C 44.474 36.289 13418000 0 6942200 6476300 0 0 0 2814 949 2781 12275;12276 8109;8110 8109 2 GSQTNLKDPVGVYCR Unmodified 1692.8254 0.82535346 660 Q02241-2;H7BYN4;Q02241;H0YME6;H0YMJ4 KIF23 Kinesin-like protein KIF23 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 102.53 95.207 3 0.0038229 1 65172 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.975 25.491 5467800 0 2219500 864400 0 0 2383900 2815 660 2782 12277;12278;12279 8111 8111 1 GSRGGSGGSYGGGGSGGGYGGGSGSR Unmodified 2090.875 0.87503386 899 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 38.759 33.954 3 0.0011934 3 27313 20150910_Q1_SA_NiHu_Masterprac_group13_C 50.593 43.646 3842700 146870 413100 1928600 287000 263910 803240 + 2816 899 2783 12280;12281;12282;12283;12284;12285 8112;8113;8114 8113 3 GSRVFCVEEEDSESSLQK Unmodified 2084.9321 0.93206295 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 112.51 103.47 3 1.1298E-110 7 75308 20150910_Q1_SA_NiHu_Masterprac_group13_C 141.22 101.31 260760000 76753000 35517000 45135000 37044000 16723000 49592000 2817 1111 2784 12286;12287;12288;12289;12290;12291 8115;8116;8117;8118;8119;8120;8121 8116 7 GSSQLRVNAAFAAR Unmodified 1446.7692 0.76915921 1312 Q8N9T8;F5H196;H0YFD2;H0YG97;F8WFC1;H0YG91;H0YH26 KRI1 Protein KRI1 homolog yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 106.34 99.033 3 0.0055782 1 65703 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.899 34.549 2800400 0 615900 0 0 808070 1376500 2818 1312 2785 12292;12293;12294 8122 8122 1 GSSWHETCFICHR Unmodified 1675.6984 0.69837881 1101 Q14192 FHL2 Four and a half LIM domains protein 2 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 2 1 105.64 93.492 3 0.00186 3 68268 20150910_Q1_SA_NiHu_Masterprac_group15_C 67.879 56.993 4199300 0 0 0 0 1701200 2498000 2819 1101 2786 12295;12296;12297 8123;8124;8125 8125 3 GSVEAASNAHLLQSK Unmodified 1510.774 0.77396981 1357 Q92766-3;Q92766;Q92766-2;C9JU34 RREB1 Ras-responsive element-binding protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 2 2 86.916 78.293 2;3 0.00061075 2 53919 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.802 42.146 6248400 426160 0 534110 203510 2013400 3071200 2820 1357 2787 12298;12299;12300;12301;12302;12303;12304 8126;8127 8126 2 GSVSLTTGQPVDQPTTESCSTLK Unmodified 2392.1428 0.14278401 1492 Q9H582-2;Q9H582;F5H7T9 ZNF644 Zinc finger protein 644 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 130.71 115.02 2 0.0091329 1 76319 20150910_Q1_SA_NiHu_Masterprac_group10_C 39.188 27.174 2268700 2268700 0 0 0 0 0 2821 1492 2788 12305 8128 8128 1 GTAYTFFTPGNLKQAR Unmodified 1770.9053 0.90531834 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 133.89 124.24 2;3 0 7 86051 20150910_Q1_SA_NiHu_Masterprac_group13_B 186.29 163.94 510900000 0 130500000 202700000 107620000 65739000 4336400 2822 1361;629 2789 12306;12307;12308;12309;12310;12311;12312;12313 8129;8130;8131;8132;8133;8134;8135 8130 6 GTEASSGTEAATGLEGEEK Unmodified 1822.8068 0.80684567 1289 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 79.523 76.813 2 0.038738 1 52912 20150910_Q1_SA_NiHu_Masterprac_group10_B 33.707 21.552 566660 0 566660 0 0 0 0 2823 1289 2790 12314 8136 8136 1 GTEGMEPEEGVTVESQPQVK Unmodified 2129.9787 0.9786788 706 O15446;O15446-2 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 116.12 108.04 2 0.014293 2 71157 20150910_Q1_SA_NiHu_Masterprac_group10_B 39.364 30.08 10314000 0 1559200 2130300 1603700 392360 4628800 2824 706 2791 12315;12316;12317;12318;12319 8137;8138 8138 2 GTFHDDRDDGVDYWAK Unmodified 1895.8075 0.80745479 452 Q9NYF8-3;E9PK91;H0YF63 BCLAF1 Bcl-2-associated transcription factor 1 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 113.02 102.95 3 0.0032951 2 73401 20150910_Q1_SA_NiHu_Masterprac_group15_C 66.215 48.036 7255600 1486400 850260 1548900 1482500 1887700 0 2825 452 2792 12320;12321;12322;12323;12324 8139;8140 8139 2 GTGASGSFKLNK Unmodified 1165.6091 0.60913632 818;843;842 P16401;P16403;Q02539;P10412;P16402 HIST1H1B;HIST1H1C;HIST1H1A;HIST1H1E;HIST1H1D Histone H1.5;Histone H1.2;Histone H1.1;Histone H1.4;Histone H1.3 no no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 62.842 55.982 2 1.2523E-289 4 41221 20150910_Q1_SA_NiHu_Masterprac_group10_C 190.66 144.25 38787000 10319000 4523000 7637300 2230100 10236000 3841500 2826 842;843;818 2793 12325;12326;12327;12328;12329;12330 8141;8142;8143;8144 8144 4 GTGIVSAPVPK Unmodified 1024.5917 0.59169534 839 P15880;H0YEN5;E9PQD7;E9PMM9;I3L404;E9PM36 RPS2 40S ribosomal protein S2 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 101.26 93.033 2 0.0097086 5 62587 20150910_Q1_SA_NiHu_Masterprac_group13_B 65.241 38.27 50635000 684450 5988400 2427300 9227600 18143000 14164000 2827 839 2794 12331;12332;12333;12334;12335;12336 8145;8146;8147;8148;8149 8145 5 GTIQTGVDTSK Unmodified 1105.5615 0.56151742 1413 Q96Q06-2;Q96Q06 PLIN4 Perilipin-4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 55.985 48.365 2 0.01798 2 34584 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.164 10.082 2135500 550620 1023800 561160 0 0 0 2828 1413 2795 12337;12338;12339 8150;8151 8151 2 GTISAPGKVVTAAAQAK Unmodified 1568.8886 0.88860564 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 2 1 2 2 1 103.08 95.339 2;3 0.00029306 4 64304 20150910_Q1_SA_NiHu_Masterprac_group10_C 83.751 59.817 27693000 7524800 3281600 2265000 3797000 8849600 1974600 2829 383;1082 2796 12340;12341;12342;12343;12344;12345;12346;12347;12348 8152;8153;8154;8155 8155 4 GTKTPINRNQLSQNR Unmodified 1725.9234 0.92342802 754 O94776;Q68DB1 MTA2;DKFZp686F2281 Metastasis-associated protein MTA2 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 55.664 48.595 4 0.011666 1 34561 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.722 34.623 2316900 0 0 442540 0 0 1874400 2830 754 2797 12349;12350 8156 8156 1 GTLVQTKGTGASGSFK Unmodified 1537.81 0.81002097 818;843;842 P16401;P16403;Q02539;P10412;P16402 HIST1H1B;HIST1H1C;HIST1H1A;HIST1H1E;HIST1H1D Histone H1.5;Histone H1.2;Histone H1.1;Histone H1.4;Histone H1.3 no no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching 4 2 2 2 1 2 77.81 70.823 2;3 2.2057E-50 7 50297 20150910_Q1_SA_NiHu_Masterprac_group10_C 120.32 85.418 55535000 28673000 5910800 4528500 4207500 8565400 3650400 2831 842;843;818 2798 12351;12352;12353;12354;12355;12356;12357;12358;12359;12360;12361;12362;12363 8157;8158;8159;8160;8161;8162;8163 8163 6 GTLVQTKGTGASGSFKLNK Unmodified 1893.032 0.031975416 818;843;842 P16401;P16403;Q02539;P10412;P16402 HIST1H1B;HIST1H1C;HIST1H1A;HIST1H1E;HIST1H1D Histone H1.5;Histone H1.2;Histone H1.1;Histone H1.4;Histone H1.3 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 2 2 2 98.342 89.682 3;4 4.8058E-27 10 60776 20150910_Q1_SA_NiHu_Masterprac_group10_C 106.87 96.251 183930000 100260000 11928000 21923000 23404000 19079000 7327000 2832 842;843;818 2799 12364;12365;12366;12367;12368;12369;12370;12371;12372;12373;12374;12375 8164;8165;8166;8167;8168;8169;8170;8171;8172;8173 8173 10 GTNIQENEYVK Unmodified 1293.6201 0.62009493 1443 Q9BRX2 PELO Protein pelota homolog yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 81.063 73.683 2 0.0097086 4 50929 20150910_Q1_SA_NiHu_Masterprac_group13_B 65.241 45.6 13787000 0 1731300 1324400 1239300 4723900 4767700 2833 1443 2800 12376;12377;12378;12379;12380 8174;8175;8176;8177 8174 3 GTPAGTTPGASQAPK Unmodified 1339.6732 0.67319314 1278 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 53.039 47.186 2 0.0050947 1 33527 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.966 26.434 3512000 385140 360450 529280 0 0 2237100 2834 1278 2801 12381;12382;12383;12384 8178 8178 1 GTPGKGATPAPPGK Unmodified 1234.667 0.66698555 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 43.069 37.913 3 0.0011282 6 26657 20150910_Q1_SA_NiHu_Masterprac_group10_B 74.133 59.459 11996000 1896200 1757700 1299600 927610 3227800 2887100 2835 383;1082 2802 12385;12386;12387;12388;12389;12390 8179;8180;8181;8182;8183;8184 8183 6 GTQLLSSGSDGLVK Unmodified 1360.7198 0.71980898 1058 Q12788 TBL3 Transducin beta-like protein 3 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 121.62 118.94 2 0.0080932 1 80697 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.527 29.949 4373000 0 525780 0 0 0 3847200 2836 1058 2803 12391;12392 8185 8185 1 GTQNIPAGKPSLQTSSAR Unmodified 1811.949 0.94897407 170 Q86YP4;B5MC40;Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 82.335 75.383 3 0.0018493 3 58893 20150910_Q1_SA_NiHu_Masterprac_group13_C 54.953 36.54 16437000 0 4296000 4830000 0 0 7310800 2837 170 2804 12393;12394;12395 8186;8187;8188 8186 3 GTQTYSVLEGDPSENYSK Unmodified 1973.8854 0.88543034 959 P52701;B4DF41;F5H2F9;F5H769;P52701-2 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 130.61 113.47 2 1.0674E-33 3 79418 20150910_Q1_SA_NiHu_Masterprac_group15_C 112.91 97.128 14952000 2903500 0 5896700 0 6151500 0 2838 959 2805 12396;12397;12398 8189;8190;8191 8190 3 GTSISTKPPLTK Unmodified 1228.7027 0.70270235 894 P35249;C9JZI1;C9JGY5;F8WE44;C9JXZ7;C9JTT7;C9J8M3;C9JW34 RFC4 Replication factor C subunit 4 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 2 2 2 1 78.874 69.559 2;3 0.0049515 3 48478 20150910_Q1_SA_NiHu_Masterprac_group15_B 85.973 35.187 9248000 671470 0 1543700 1133300 3480600 2419000 2839 894 2806 12399;12400;12401;12402;12403;12404;12405;12406 8192;8193;8194 8194 3 GTTATSAQANSTPTSVASVVTSAESPASRQAAAK Unmodified 3204.5858 0.58584128 170 Q86YP4;B5MC40;Q86YP4-2;B4DKZ7 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.16 130.56 3 9.1533E-24 1 83928 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.565 48.812 31808000 0 31808000 0 0 0 0 2840 170 2807 12407 8195 8195 1 GTTEPHSRGHLSRPEAQSLSPYTTSANR Unmodified 3036.4762 0.47617167 754 O94776;Q68DB1 MTA2;DKFZp686F2281 Metastasis-associated protein MTA2 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 81.467 79.911 5 0.001788 1 55038 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.51 41.343 7877400 0 0 0 0 0 7877400 2841 754 2808 12408 8196 8196 1 GTVQTGVDTAK Unmodified 1075.551 0.55095274 1413 Q96Q06-2;Q96Q06 PLIN4 Perilipin-4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 39.958 38.87 2 0.029071 1 27496 20150910_Q1_SA_NiHu_Masterprac_group10_B 51.727 22.194 1101400 0 728140 0 110920 0 262310 2842 1413 2809 12409;12410;12411 8197 8197 1 GVAFIRFDK Unmodified 1051.5815 0.581465 1146 Q15717 ELAVL1 ELAV-like protein 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 130.87 120.54 2 3.9514E-86 4 85795 20150910_Q1_SA_NiHu_Masterprac_group15_B 157.34 109.39 92049000 0 11739000 23378000 0 10245000 46688000 2843 1146 2810 12412;12413;12414;12415 8198;8199;8200;8201 8198 4 GVAVKVEEPR Unmodified 1082.6084 0.60840804 1439 Q9BQ69 MACROD1 O-acetyl-ADP-ribose deacetylase MACROD1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 71.508 65.783 2 0.015668 2 45909 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.014 65.808 2469700 454900 578070 172270 131100 0 1133300 2844 1439 2811 12416;12417;12418;12419;12420 8202;8203 8202 2 GVAVKVEEPRYK Unmodified 1373.7667 0.76669959 1439 Q9BQ69 MACROD1 O-acetyl-ADP-ribose deacetylase MACROD1 yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 85.66 76.336 3 0.01156 2 52559 20150910_Q1_SA_NiHu_Masterprac_group10_B 68.355 49.079 9414500 2344200 2461200 4609100 0 0 0 2845 1439 2812 12421;12422;12423 8204;8205 8205 2 GVDGSFLARPSK Unmodified 1232.6513 0.65133548 1040 Q06124;Q06124-2;Q06124-3 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 2 2 97.743 88.328 2;3 0.0018641 3 65238 20150910_Q1_SA_NiHu_Masterprac_group15_C 83.137 64.038 4116100 292210 0 0 0 1380300 2443600 2846 1040 2813 12424;12425;12426;12427;12428 8206;8207;8208 8208 3 GVEICIATPGR Unmodified 1171.6019 0.60194245 1361;629;853 P17844;E7ETL9;Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 126.91 124.13 2 0.0023914 3 83779 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.667 59.753 7727100 0 1550100 0 0 0 6177000 2847 853;1361;629 2814 12429;12430 8209;8210;8211 8210 3 GVEKQQLPEQPFEK Unmodified 1655.8519 0.85188578 923 P46087;Q3KQS4;P46087-2 NOP2 Putative ribosomal RNA methyltransferase NOP2 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 103.58 96.814 3 0.00415 1 69933 20150910_Q1_SA_NiHu_Masterprac_group15_C 58.268 43.073 8312500 0 0 0 1246000 5283900 1782600 2848 923 2815 12431;12432;12433 8212 8212 1 GVGGNNGGNGNGGGAFSQAR Unmodified 1746.7782 0.77822034 804 P08047;G5E9M8;H3BUU5;H3BVI2 SP1 Transcription factor Sp1 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 64.228 57.268 2 0.00016211 5 46586 20150910_Q1_SA_NiHu_Masterprac_group13_C 78.674 46.379 19381000 1144100 3575600 3367100 930670 2756100 7607000 2849 804 2816 12434;12435;12436;12437;12438;12439 8213;8214;8215;8216;8217 8215 5 GVLHTFSPSPK Unmodified 1168.6241 0.6240581 170 Q86YP4;B5MC40;Q86YP4-2;B4DKZ7;F5H7D9;H7C3H1 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 96.167 86.688 2 0.0050529 1 59266 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.951 5.5958 6084300 0 0 648960 0 0 5435400 2850 170 2817 12440;12441 8218 8218 1 GVLLTDGSEKDK Unmodified 1260.6561 0.65614609 952 P51532-5;P51532-2;P51532-3;P51532-4;P51532;Q9HBD4;F5H0X5 SMARCA4 Transcription activator BRG1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 68.315 59.742 2;3 8.9909E-07 5 48431 20150910_Q1_SA_NiHu_Masterprac_group13_C 102.4 76.388 8845400 367020 669620 876380 0 920660 6011800 2851 952 2818 12442;12443;12444;12445;12446;12447 8219;8220;8221;8222;8223 8219 5 GVLNVHPAASASKPSADQIR Unmodified 2017.0705 0.070486187 1353 Q92576-2;Q92576;E7EVH3;E7ER40 PHF3 PHD finger protein 3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 103.66 93.735 4 0.016693 1 64113 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.665 23.785 3814800 0 0 743360 0 0 3071400 2852 1353 2819 12448;12449 8224 8224 1 GVPATNPAPGKGTGSGLIGASGATMPTDTSK Unmodified 2797.3916 0.39162191 1114 Q14781 CBX2 Chromobox protein homolog 2 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 129.94 124.98 3 5.901E-05 1 84699 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.553 18.561 2718600 0 0 0 0 0 2718600 2853 1114 2820 12450 8225 8225 1 GVPQQIEVAR Unmodified 1095.6037 0.60365701 1394 Q96I24 FUBP3 Far upstream element-binding protein 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 98.786 89.211 2 0.0028455 4 60848 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.775 70.649 23257000 1954500 2654100 2223500 0 3888200 12537000 2854 1394 2821 12451;12452;12453;12454;12455 8226;8227;8228;8229 8227 4 GVQDSGGSEVAWGPQK Unmodified 1600.7481 0.74814899 182 E7EMV9;E5RI52;E5RJC6;B7Z1T6;Q6NTE8-2;E9PAK6;Q6NTE8 C5orf45 UPF0544 protein C5orf45 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 97.154 94.597 2 3.7995E-07 1 64652 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.952 74.375 835360 0 0 0 0 0 835360 2855 182 2822 12456 8230 8230 1 GVQGFQDYIEK Unmodified 1282.6194 0.61936665 1566 Q9NZB2;Q9NZB2-6;Q9NZB2-4;Q9NZB2-2;Q9NZB2-5 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 131.02 130.72 2 0.0036025 1 83835 20150910_Q1_SA_NiHu_Masterprac_group10_B 81.625 51.858 4461200 0 2601900 0 1859300 0 0 2856 1566 2823 12457;12458 8231 8231 1 GVTAKGPVNSCQGK Unmodified 1401.7034 0.70344741 23 A6NHR9;A6NHR9-2 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 34.848 32.639 3 0.029471 1 22561 20150910_Q1_SA_NiHu_Masterprac_group10_B 41.577 15.877 239140 0 239140 0 0 0 0 2857 23 2824 12459 8232 8232 1 GVTCLSFSK Unmodified 997.49027 0.49026674 167 B4E3L0;Q2TAY7 SMU1 WD40 repeat-containing protein SMU1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 112.69 99.887 2 0.0087494 1 68033 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.882 56.806 4076300 0 0 706200 0 1101100 2269000 2858 167 2825 12460;12461;12462 8233 8233 1 GVVEVTHDLQK Unmodified 1223.651 0.65100113 108 E9PKH2;B4DN87;P50454 SERPINH1 Serpin H1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 83.615 82.059 2 0.0068157 1 56317 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.525 60.526 0 0 0 0 0 0 0 2859 108 2826 12463 8234 8234 1 GWGEEQNHGVK Unmodified 1239.5632 0.56324876 115 B4DQ42;Q9HC62;E7ENF4 SENP2 Sentrin-specific protease 2 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 2 2 1 2 2 51.291 44.896 2;3 0.004109 3 32465 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.533 52.205 6451000 0 1185200 1529600 495780 182460 3058000 2860 115 2827 12464;12465;12466;12467;12468;12469;12470;12471;12472 8235;8236;8237 8237 3 GYAVEVLLEQNRSR Unmodified 1632.8584 0.85836815 474 F2Z2E1;Q96EK7;F5GZX9;F5GY05;B4DL34 FAM120B Constitutive coactivator of peroxisome proliferator-activated receptor gamma yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 56.52 47.429 3 0.004242 1 33684 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.116 21.162 3094700 0 0 507990 0 789370 1797400 2861 474 2828 12473;12474;12475 8238 8238 1 GYAYVEFENPDEAEK Unmodified 1759.7577 0.75771063 631 H3BV80;H3BMM9;H3BTC0;Q15287;H3BR57;H3BPG5;H3BMS0;Q15287-3;Q15287-2 RNPS1 RNA-binding protein with serine-rich domain 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 132.47 124.65 2 1.8246E-199 7 87549 20150910_Q1_SA_NiHu_Masterprac_group15_B 168.93 128.55 112280000 34945000 36721000 0 9229400 9071000 22312000 2862 631 2829 12476;12477;12478;12479;12480;12481 8239;8240;8241;8242;8243;8244;8245 8241 7 GYEEEIIHFK Unmodified 1263.6136 0.61355299 1362 Q92878-2;Q92878;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 132.55 122.22 3 0.027422 2 87165 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.607 50.579 0 0 0 0 0 0 0 2863 1362 2830 12482;12483 8246;8247 8246 2 GYGPATQVR Unmodified 947.48248 0.48247924 18 A6NEM2;P51610-2;P51610;H7C1C4;Q9Y5Z7 HCFC1;HCFC2 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6;Host cell factor 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 64.596 56.699 2 0.038976 1 40068 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.371 50.897 6526400 0 0 0 0 1856800 4669700 2864 18 2831 12484;12485 8248 8248 1 GYGYGQGAGTLNMDR Unmodified 1558.6834 0.68344025 1152 Q16527;F8VW96;F8VQR7 CSRP2 Cysteine and glycine-rich protein 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 2 116.01 106.25 2 0.00060771 5 72549 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.758 67.389 15221000 820570 2130900 1452100 0 1771400 9046300 2865 1152 2832 12486;12487;12488;12489;12490;12491 8249;8250;8251;8252;8253 8251 5 GYGYGQGAGTLNMDRGER Unmodified 1900.8486 0.8486081 1152 Q16527;F8VW96;F8VQR7 CSRP2 Cysteine and glycine-rich protein 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 1 105.88 96.136 3 0.0015797 7 71097 20150910_Q1_SA_NiHu_Masterprac_group13_C 59.884 41.471 99666000 6191600 16686000 13053000 4142100 9421300 50173000 2866 1152 2833 12492;12493;12494;12495;12496;12497;12498 8254;8255;8256;8257;8258;8259;8260 8256 7 GYGYGQGAGTLSTDK Unmodified 1473.6736 0.67358707 859 P21291;E9PND2;E9PS42;E9PP21 CSRP1 Cysteine and glycine-rich protein 1 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 92.116 84.321 2 0.00069414 5 57655 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.02 65.449 9133300 573670 1434300 761880 652100 3841600 1869700 2867 859 2834 12499;12500;12501;12502;12503;12504 8261;8262;8263;8264;8265 8263 4 GYGYGQGAGTLSTDKGESLGIK Unmodified 2158.0542 0.054227 859 P21291;E9PND2;E9PS42;E9PP21 CSRP1 Cysteine and glycine-rich protein 1 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 127.44 119.64 3 5.3197E-06 4 79638 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.225 53.084 17239000 8686500 948530 0 1252500 3044600 3306500 2868 859 2835 12505;12506;12507;12508;12509 8266;8267;8268;8269 8267 4 GYHTLSQGSLPNYPK Unmodified 1660.8209 0.82092001 1495 Q9H649 NSUN3 Putative methyltransferase NSUN3 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 116.02 105.06 3 0.0021215 1 69133 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.657 42.868 8916500 779720 2129400 1579200 0 973020 3455200 2869 1495 2836 12510;12511;12512;12513;12514 8270 8270 1 GYNATVLAYGQTGSGK Unmodified 1585.7736 0.77363546 768 O95239;O95239-2;Q2VIQ3 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 120.89 110.9 2 0.0039681 4 75698 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.172 42.028 7999800 649190 1840700 1074400 0 0 4435500 2870 768 2837 12515;12516;12517;12518 8271;8272;8273;8274 8272 3 GYPHLCSICDLPVHSNK Unmodified 1995.9295 0.92950095 52 P43243;A8MXP9;D6REM6;D6R991;H0Y8T4 MATR3 Matrin-3 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 2 131.09 123.27 3;4 3.9757E-271 7 83420 20150910_Q1_SA_NiHu_Masterprac_group10_B 174.24 142.92 101940000 7934700 38205000 9534900 16436000 1828800 28006000 2871 52 2838 12519;12520;12521;12522;12523;12524;12525;12526 8275;8276;8277;8278;8279;8280;8281 8279 7 GYPHWPARIDEMPEAAVK Unmodified 2066.0044 0.0043804565 954 P51858;B7Z525 HDGF Hepatoma-derived growth factor yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 132.93 125.09 3;4 0.035508 2 79003 20150910_Q1_SA_NiHu_Masterprac_group10_C 43.05 20.633 24114000 4404400 0 0 19710000 0 0 2872 954 2839 12527;12528 8282;8283 8283 1 GYSPTHREEEYGK Unmodified 1551.6954 0.69538514 301 P20930;CON__P20930 FLG Filaggrin yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 39.757 39.33 3 0.0017063 1 27898 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.871 64.845 9360900 0 0 0 2859600 0 6501300 + 2873 301 2840 12529;12530 8284 8284 1 GYTIPLDK Unmodified 905.48583 0.48583328 583 Q13573;G3V3A4;G3V4X8;E9PGQ7;G3V5R3 SNW1 SNW domain-containing protein 1 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 115.46 106.31 2 9.186E-05 5 70879 20150910_Q1_SA_NiHu_Masterprac_group10_C 113.41 97.268 30266000 1668400 6069600 4382500 3077000 4439100 10630000 2874 583 2841 12531;12532;12533;12534;12535;12536 8285;8286;8287;8288;8289 8289 5 GYYSPGIVSTR Unmodified 1198.5982 0.59823728 1059 Q12789-3;Q12789;H7BYG6 GTF3C1 General transcription factor 3C polypeptide 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 111.6 101.98 2 0.0006488 1 69655 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.82 82.244 7828000 0 0 1081200 417310 813830 5515700 2875 1059 2842 12537;12538;12539;12540 8290 8290 1 HAAADEALKILQK Unmodified 1406.7882 0.78816332 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 122.71 112.22 3 1.1317E-59 4 80374 20150910_Q1_SA_NiHu_Masterprac_group13_C 131.17 105.83 49553000 9887100 4892000 12419000 7685700 979900 13689000 2876 578 2843 12541;12542;12543;12544;12545;12546;12547 8291;8292;8293;8294 8292 3 HAAENPGKYNILGTNTIMDK Unmodified 2186.079 0.079001963 1022;1023 Q00839;B3KX72;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 130.99 121.07 3;4 0 10 85813 20150910_Q1_SA_NiHu_Masterprac_group15_B 190.37 168.83 545590000 115920000 174060000 128520000 49640000 14575000 62872000 2877 1022;1023 2844 12548;12549;12550;12551;12552;12553;12554;12555;12556;12557;12558 8295;8296;8297;8298;8299;8300;8301;8302;8303;8304 8298 10 HAAENPGKYNILGTNTIMDK Oxidation (M) 2202.0739 0.073916585 1022;1023 Q00839;B3KX72;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 0 1 1 By MS/MS By matching By matching By matching By matching By matching 1 122.09 107.4 3 1.732E-08 1 71689 20150910_Q1_SA_NiHu_Masterprac_group10_C 86.573 72.626 0 0 0 0 0 0 0 2878 1022;1023 2844 12559 8305 8305 122 1 HAAFVTPDQK Unmodified 1112.5615 0.56145784 554 F8W6N6;P10244 MYBL2 Myb-related protein B yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 58.05 52.956 2 0.0070719 5 38003 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.817 65.555 3553100 828040 794370 0 455760 672840 802060 2879 554 2845 12560;12561;12562;12563;12564 8306;8307;8308;8309;8310 8307 5 HAALSLSKEHNPTQYEER Unmodified 2109.0239 0.023929925 1478 Q9H0C8;H7C2I8 ILKAP Integrin-linked kinase-associated serine/threonine phosphatase 2C yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 84.227 75.12 4 0.0006069 2 52267 20150910_Q1_SA_NiHu_Masterprac_group10_B 72.797 61.454 4682900 1600500 1232300 0 0 1850200 0 2880 1478 2846 12565;12566;12567 8311;8312 8311 2 HAASTVQILGAEK Unmodified 1323.7147 0.71466402 1640 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 2 2 90.539 82.659 2;3 1.5633E-34 17 61720 20150910_Q1_SA_NiHu_Masterprac_group15_C 120.6 74.941 75994000 15661000 5085400 8575600 11182000 20938000 14552000 2881 1640 2847 12568;12569;12570;12571;12572;12573;12574;12575;12576;12577;12578;12579;12580;12581 8313;8314;8315;8316;8317;8318;8319;8320;8321;8322;8323;8324;8325;8326;8327;8328;8329 8322 17 HADNCAGPDGVEGENGGETK Unmodified 2012.813 0.81301045 940 P49711;B5MC38 CTCF Transcriptional repressor CTCF yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 48.78 43.09 3 8.4938E-05 8 30742 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.538 65.921 5821500 961430 766710 228260 735760 1187400 1941900 2882 940 2848 12582;12583;12584;12585;12586;12587;12588 8330;8331;8332;8333;8334;8335;8336;8337 8333 8 HAIPIIKEK Unmodified 1047.6441 0.64406526 693 O00571;O00571-2;B4DLU5;B4E3C4 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 69.161 60.321 2 4.8407E-54 2 42669 20150910_Q1_SA_NiHu_Masterprac_group10_B 143.37 102.6 11347000 1720800 3115100 0 0 6511200 0 2883 693 2849 12589;12590;12591 8338;8339 8338 2 HAIPIIKEKR Unmodified 1203.7452 0.74517629 693 O00571;O00571-2;B4DLU5;B4E3C4 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 55.959 49.822 3 0.015831 2 40774 20150910_Q1_SA_NiHu_Masterprac_group15_C 87.149 38.355 7606500 0 1373000 1617900 1066600 1242000 2307000 2884 693 2850 12592;12593;12594;12595;12596 8340;8341 8341 2 HALFPELPK Unmodified 1050.5862 0.58621603 1399 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.4 130.79 2 0.0059488 1 84234 20150910_Q1_SA_NiHu_Masterprac_group10_B 104.2 64.142 4023300 0 4023300 0 0 0 0 2885 1399 2851 12597 8342 8342 1 HALKNGDICETSGKPK Unmodified 1753.8781 0.87811731 113 B4DP61;Q16637-4;Q16637-2;Q16637-3;Q16637;E7EQZ4 SMN1 Survival motor neuron protein yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 37.962 33.257 4 0.0015634 5 22637 20150910_Q1_SA_NiHu_Masterprac_group13_B 68.751 50.736 9521000 1440700 1131000 2374400 2074600 1295000 1205300 2886 113 2852 12598;12599;12600;12601;12602;12603 8343;8344;8345;8346;8347 8344 5 HAPINSAQHLDNVDQTGPK Unmodified 2040.9977 0.99771517 462 E9PPY3;O43159 RRP8 Ribosomal RNA-processing protein 8 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 79.005 71.494 3;4 1.0453E-81 12 49477 20150910_Q1_SA_NiHu_Masterprac_group15_B 127.49 116.15 181370000 13680000 47390000 39332000 16003000 16019000 48943000 2887 462 2853 12604;12605;12606;12607;12608;12609;12610;12611;12612;12613;12614;12615 8348;8349;8350;8351;8352;8353;8354;8355;8356;8357;8358;8359 8353 12 HAQVHAGGPAPHPCPR Unmodified 1687.8114 0.81137515 1313 Q8NAF0 ZNF579 Zinc finger protein 579 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 40.22 35.346 4 0.0018634 3 24412 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.414 57.414 5843800 0 685760 591000 746980 1248300 2571700 2888 1313 2854 12616;12617;12618;12619;12620 8360;8361;8362 8360 3 HATIYPTEEELQAVQK Unmodified 1855.9316 0.93159267 1403 Q96KR1;B5MEH6;H0Y8W1 ZFR Zinc finger RNA-binding protein yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 2 128.73 120.91 2;3 0 11 81806 20150910_Q1_SA_NiHu_Masterprac_group13_C 225.85 161.62 289010000 88616000 22661000 61477000 9910700 52402000 53942000 2889 1403 2855 12621;12622;12623;12624;12625;12626;12627;12628;12629;12630 8363;8364;8365;8366;8367;8368;8369;8370;8371;8372;8373 8364 10 HATLSVCYK Unmodified 1077.5277 0.52771487 1078 Q13330;E7ESY4;Q13330-2 MTA1 Metastasis-associated protein MTA1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 69.183 68.029 2 0.018956 1 47342 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.399 40.323 1803300 0 0 0 0 0 1803300 2890 1078 2856 12631 8374 8374 1 HAVNGFLKENKDNDK Unmodified 1727.8591 0.85909643 739 O75319;O75319-2;C9JGC8;C9JYA6 DUSP11 RNA/RNP complex-1-interacting phosphatase yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 52.722 46.548 3;4 9.0732E-08 7 33344 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.428 85.079 18047000 0 1578500 2716600 1060000 1901000 10791000 2891 739 2857 12632;12633;12634;12635;12636;12637;12638 8375;8376;8377;8378;8379;8380;8381 8378 7 HAVSEGTKAVTK Unmodified 1226.6619 0.66190017 119 Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;O60814;Q5QNW6-2;B4DR52;Q99880;P57053;Q96A08 HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST1H2BL;H2BFS;HIST1H2BA Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B;Histone H2B type 1-L;Histone H2B type F-S;Histone H2B type 1-A no no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 23.207 19.436 3 0.0016751 3 15635 20150910_Q1_SA_NiHu_Masterprac_group13_C 90.434 63.545 6303000 893280 2227400 1612900 802940 766470 0 2892 119 2858 12639;12640;12641;12642;12643 8382;8383;8384 8383 3 HCEDGICTVTAGPK Unmodified 1543.6759 0.67591203 329 D6RH30;P19838;P19838-2;D6RC45 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 78.199 70.688 3 1.0909E-07 2 48995 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.059 80.514 9165600 607070 1752700 1433000 426440 1353200 3593200 2893 329 2859 12644;12645;12646;12647;12648;12649 8385;8386 8385 2 HCFLQKPSVAHFGSEK Unmodified 1870.9148 0.91483717 436 Q9Y4E5-2;E9PH99;Q9Y4E5 ZNF451 Zinc finger protein 451 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 103.38 96.106 4 0.017462 1 65668 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.542 30.99 9470400 0 373810 0 0 2808300 6288300 2894 436 2860 12650;12651;12652 8387 8387 1 HCPSAVVPVELQK Unmodified 1462.7602 0.76023401 1566 Q9NZB2;Q9NZB2-6;Q9NZB2-4;Q9NZB2-2;Q9NZB2-5 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 116.96 102.98 2 0.025608 1 69064 20150910_Q1_SA_NiHu_Masterprac_group10_C 46.159 20.178 448080 448080 0 0 0 0 0 2895 1566 2861 12653 8388 8388 1 HCSQVDSVRGFGGK Unmodified 1532.7154 0.71540908 1104 Q14247;Q14247-3;Q14247-2;H7C314 CTTN Src substrate cortactin yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 64.957 59.066 3 8.6484E-42 7 41969 20150910_Q1_SA_NiHu_Masterprac_group15_B 121.21 102.11 11806000 2537500 2428800 0 1306200 2341400 3192500 2896 1104 2862 12654;12655;12656;12657;12658;12659 8389;8390;8391;8392;8393;8394;8395 8391 7 HDEEDYVEMK Unmodified 1293.5183 0.51833198 1500 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 78.499 71.58 2 0.0018419 2 49659 20150910_Q1_SA_NiHu_Masterprac_group15_B 102.95 98.803 2258600 0 556750 295230 0 0 1406600 2897 1500 2863 12660;12661;12662 8396;8397 8396 2 HDELTYF Unmodified 923.4025 0.40249759 786 P04080 CSTB Cystatin-B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1 1 131.2 122.95 1;2 0.0079774 6 86188 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.596 97.596 164520000 28687000 18281000 38078000 5976200 46606000 26897000 2898 786 2864 12663;12664;12665;12666;12667;12668;12669 8398;8399;8400;8401;8402;8403 8399 6 HDGRGIIVDAR Unmodified 1207.6422 0.64216778 1207 Q5VVJ2;Q5VVJ2-2 MYSM1 Histone H2A deubiquitinase MYSM1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 64.154 53.709 3 0.02964 1 38592 20150910_Q1_SA_NiHu_Masterprac_group10_B 51.727 34.814 2002000 0 761690 457570 0 782750 0 2899 1207 2865 12670;12671;12672 8404 8404 1 HDVGAYMLMYK Unmodified 1326.6101 0.6100643 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 132.58 118.98 2 1.1143E-127 2 87404 20150910_Q1_SA_NiHu_Masterprac_group15_B 164.65 136.08 53133000 0 0 9207500 0 7621800 36303000 2900 1012 2866 12673;12674;12675 8405;8406 8405 2 HDVKFPLDSTGSELKQK Unmodified 1928.0003 0.0003409361 644 H3BRL3;O14562;H3BUM8 UBFD1 Ubiquitin domain-containing protein UBFD1 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 2 2 1 2 107.11 99.839 3;4 0.003421 4 66192 20150910_Q1_SA_NiHu_Masterprac_group10_B 49.621 26.63 19140000 1438800 2786000 3185100 1147000 0 10583000 2901 644 2867 12676;12677;12678;12679;12680;12681;12682;12683 8407;8408;8409;8410 8410 4 HEADANPRAGLIPSK Unmodified 1574.8165 0.81650333 1190 Q5T2T1;B4DWL9 MPP7 MAGUK p55 subfamily member 7 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 73.907 66.496 3 0.0027599 3 51983 20150910_Q1_SA_NiHu_Masterprac_group15_C 64.224 21.75 4102600 421640 436300 874370 466500 804310 1099500 2902 1190 2868 12684;12685;12686;12687;12688;12689 8411;8412;8413 8413 3 HECQANGPEDLNR Unmodified 1538.6532 0.65320275 980 P60981;P60981-2 DSTN Destrin yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 44.773 43.092 3 0.0012826 2 30837 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.987 66.391 1260200 0 199410 0 0 0 1060800 2903 980 2869 12690;12691 8414;8415 8414 2 HECQANGPEDLNRACIAEK Unmodified 2210.9797 0.97969862 980 P60981;P60981-2 DSTN Destrin yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 1 3 84.267 77.037 3;4 0.00036971 5 58289 20150910_Q1_SA_NiHu_Masterprac_group15_C 68.41 68.41 17586000 435170 1676900 5342600 698570 2587600 6845200 2904 980 2870 12692;12693;12694;12695;12696;12697;12698;12699;12700 8416;8417;8418;8419;8420 8419 5 HECQNLESEPIRNSVK Unmodified 1938.9218 0.92177304 936 P49454 CENPF Centromere protein F yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 69.243 68.089 3 0.0031603 1 47304 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.393 38.998 1027700 0 0 0 0 0 1027700 2905 936 2871 12701 8421 8421 1 HEEQSNEDIPIAEQSSK Unmodified 1939.8759 0.87592828 1063 Q12888;Q12888-2;A6NNK5;F8VY86;C9JXV0 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 81.175 73.796 3 0.00090636 2 56442 20150910_Q1_SA_NiHu_Masterprac_group15_C 73.498 60.658 15603000 0 2283600 2101000 2760700 3689300 4768400 2906 1063 2872 12702;12703;12704;12705;12706 8422;8423 8423 2 HELQANCYEEVKDR Unmodified 1789.8053 0.8053463 461 E9PP50;P23528;G3V1A4;E9PK25 CFL1 Cofilin-1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 72.862 66.227 3 0.0030109 2 46047 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.444 52.411 2592600 0 586480 0 0 616630 1389500 2907 461 2873 12707;12708;12709 8424;8425 8424 2 HEPVQPSAHHSAEPAEAGK Unmodified 1977.9293 0.92930126 953 P51608-2;P51608;B5MCB4;F8WAB7;F5H1U8 MECP2 Methyl-CpG-binding protein 2 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 2 1 39.827 33.351 4 0.00096931 3 23095 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.461 33.507 4552000 679160 659840 548030 0 1420100 1244800 2908 953 2874 12710;12711;12712;12713;12714;12715 8426;8427;8428 8428 3 HEQADEDLLSQYENGSSTVVEAK Unmodified 2548.1565 0.15651982 1351 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 132.78 125.9 3 0 5 85408 20150910_Q1_SA_NiHu_Masterprac_group13_B 200.14 138.83 90746000 23449000 0 0 26667000 0 40630000 2909 1351 2875 12716;12717;12718 8429;8430;8431;8432;8433 8430 5 HEQGLSTALSVEK Unmodified 1397.7151 0.71505795 1395 Q96I25;H0Y6J6;Q5W012 RBM17 Splicing factor 45 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 1 2 96.736 90.494 2;3 2.3398E-131 9 61945 20150910_Q1_SA_NiHu_Masterprac_group15_B 157.35 124.91 45157000 5290500 9929200 4312600 9936900 859220 14829000 2910 1395 2876 12719;12720;12721;12722;12723;12724;12725;12726;12727;12728 8434;8435;8436;8437;8438;8439;8440;8441;8442 8439 9 HEQGLSTALSVEKTSK Unmodified 1713.8897 0.88972785 1395 Q96I25;H0Y6J6;Q5W012 RBM17 Splicing factor 45 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 88.532 79.761 3 0.03924 1 55160 20150910_Q1_SA_NiHu_Masterprac_group10_C 37.042 18.373 797620 797620 0 0 0 0 0 2911 1395 2877 12729 8443 8443 1 HERFQSLSFPHTK Unmodified 1612.811 0.81102402 965 P54132;F5H7R6;H0YNU5 BLM Bloom syndrome protein yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 100.24 91.137 4 9.1931E-06 2 62114 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.732 86.159 8005100 0 0 2210100 976830 2044500 2773800 2912 965 2878 12730;12731;12732;12733 8444;8445 8445 2 HEYELNSTPDKK Unmodified 1459.6943 0.69432251 1600 Q9UK61-2;Q9UK61-3;Q9UK61-4;Q9UK61 FAM208A Protein FAM208A yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 48.233 43.119 3 0.0021198 2 35193 20150910_Q1_SA_NiHu_Masterprac_group13_C 65.842 36.938 1144100 0 345030 441000 0 0 358080 2913 1600 2879 12734;12735;12736 8446;8447 8447 2 HFADGLETDGTLQK Unmodified 1530.7314 0.7314363 1488 Q9H410;B4DWT2;Q5JW53;Q5JW54;Q9H410-2;Q5JW58;Q9H410-3;Q5JW57 DSN1 Kinetochore-associated protein DSN1 homolog yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 2 1 1 1 2 105.5 98.311 2;3 0.0010777 5 70852 20150910_Q1_SA_NiHu_Masterprac_group15_C 79.886 55.387 6819900 1062200 797260 0 406870 1409400 3144100 2914 1488 2880 12737;12738;12739;12740;12741;12742;12743 8448;8449;8450;8451;8452 8451 5 HFCGGTLISPK Unmodified 1215.607 0.60702783 295 CON__P06868 yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 95.054 87.142 2 1.5856E-29 3 59873 20150910_Q1_SA_NiHu_Masterprac_group15_B 125.23 83.826 22230000 2508600 1710400 1527000 2055300 5469800 8958900 + 2915 295 2881 12744;12745;12746;12747;12748;12749 8453;8454;8455 8453 3 HFEEHNSMNELKQPINK Unmodified 2093.9953 0.99527233 1463;1464 Q9BXS6-2;Q9BXS6-3;E7ERR5;H0YMD2;Q9BXS6-4 NUSAP1 Nucleolar and spindle-associated protein 1 no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 81.156 79.701 4 0.0034214 1 54828 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.674 51.041 1587700 0 0 0 0 0 1587700 2916 1463;1464 2882 12750 8456 8456 1 HFHTQTQSLQQSVRK Unmodified 1823.9391 0.93907808 739 O75319 DUSP11 RNA/RNP complex-1-interacting phosphatase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 58.536 52.139 4 1.2974E-08 5 36816 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.464 60.172 6717000 0 753860 753580 974960 1508300 2726300 2917 739 2883 12751;12752;12753;12754;12755 8457;8458;8459;8460;8461 8459 5 HFILDECDK Unmodified 1175.5281 0.5281088 91 H0Y6N8;H0Y4V8;H0Y6G9;H0Y557;F6S4E6;F6UN21;F6TRA5;B4DIJ6;F6WLT2;F8VZL8;H0Y7X6;H0Y7G4;Q5STU3;Q13838;Q13838-2;F8VQ10;H0Y800;F6UJC5;E9PP12;B4DP52 DDX39B Spliceosome RNA helicase DDX39B yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 100.22 92.094 2 0.0071581 4 62331 20150910_Q1_SA_NiHu_Masterprac_group13_B 89.047 69.406 8918100 704960 1444000 1389600 867840 2029000 2482800 2918 91 2884 12756;12757;12758;12759;12760;12761 8462;8463;8464;8465 8462 4 HFMLSVK Unmodified 860.45784 0.4578444 1042 Q06330;D6R927;Q06330-5;Q06330-4;Q06330-6;Q06330-7;Q06330-3;Q06330-2;D6RBQ8;D6RA45;D6RCM1;D6R946;D6RB37 RBPJ Recombining binding protein suppressor of hairless yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 103.24 93.233 2 0.014319 2 63936 20150910_Q1_SA_NiHu_Masterprac_group15_B 102.71 65.155 11097000 1975900 0 3171200 0 0 5949500 2919 1042 2885 12762;12763;12764 8466;8467 8466 2 HFSQGSALILHQR Unmodified 1492.7899 0.78989465 844 P17028 ZNF24 Zinc finger protein 24 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 96.089 88.176 3 5.5437E-74 6 60728 20150910_Q1_SA_NiHu_Masterprac_group15_B 137.09 115.04 21743000 1749600 2804700 3636200 2472300 263700 10816000 2920 844 2886 12765;12766;12767;12768;12769;12770 8468;8469;8470;8471;8472;8473 8471 6 HFTILDAPGHK Unmodified 1234.6459 0.64585618 642 H3BR35;P15170;P15170-2;F5GWG9;Q8IYD1;H3BSV8 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 99.169 91.107 3 0.0033714 3 62479 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.07 61.849 14241000 730600 2766100 1934200 1096300 2488300 5225500 2921 642 2887 12771;12772;12773;12774;12775;12776 8474;8475;8476 8474 3 HFVGILNK Unmodified 926.53379 0.53378653 1475 Q9GZS1-2;Q9GZS1;B4DW33 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 96.861 89.891 2 0.0061215 2 61635 20150910_Q1_SA_NiHu_Masterprac_group15_B 107.32 61.302 9595900 0 1024900 0 0 3680900 4890100 2922 1475 2888 12777;12778;12779 8477;8478 8477 2 HFYLSPLDNSK Unmodified 1319.651 0.65100113 737 O75132 ZBED4 Zinc finger BED domain-containing protein 4 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 125.82 123.96 2 0.0043384 1 84211 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.387 56.957 5679700 0 1044000 0 865030 0 3770700 2923 737 2889 12780;12781;12782 8479 8479 1 HGATLVHCAAGVSR Unmodified 1434.715 0.71501515 762 O95147 DUSP14 Dual specificity protein phosphatase 14 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 56.651 52.151 3 0.0011161 2 37166 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.92 49.79 2172800 0 373740 0 205420 447410 1146200 2924 762 2890 12783;12784;12785;12786 8480;8481 8480 2 HGDEIITSTTSNYETQTFSSK Unmodified 2345.0659 0.065913898 1224 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 127.1 122.14 3 0.00013201 2 78071 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.648 43.329 2754700 0 0 0 0 0 2754700 2925 1224 2891 12787;12788 8482;8483 8483 2 HGDLPDIQIK Unmodified 1134.6033 0.60332266 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 121.49 111.47 2 0.0020237 1 76127 20150910_Q1_SA_NiHu_Masterprac_group15_B 102.53 50.276 12673000 750590 0 0 0 0 11923000 2926 1012 2892 12789;12790 8484 8484 1 HGDVITIIDR Unmodified 1137.6142 0.6142217 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 116.72 108.64 2 0.013063 2 74215 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.672 42.241 22601000 0 3484000 2228800 820960 3187100 12880000 2927 919;920 2893 12791;12792;12793;12794;12795 8485;8486 8485 2 HGEPEEDIVGLQAFQER Unmodified 1952.9228 0.9228189 100 E9PF10;O75694-2;B4DLT2;O75694 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 133.52 133.52 3 1.9541E-155 1 86615 20150910_Q1_SA_NiHu_Masterprac_group13_B 151.73 122.7 36594000 0 0 0 36594000 0 0 2928 100 2894 12796 8487 8487 1 HGEVCPAGWKPGSDTIKPDVQK Unmodified 2405.1798 0.17977864 1044 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 4 2 4 3 2 106.75 99.678 3;4;5 6.8061E-215 8 67957 20150910_Q1_SA_NiHu_Masterprac_group15_B 159.4 143.12 1074100000 2811900 233770000 142580000 73767000 148360000 472850000 2929 1044 2895 12797;12798;12799;12800;12801;12802;12803;12804;12805;12806;12807;12808;12809;12810;12811;12812 8488;8489;8490;8491;8492;8493;8494;8495 8492 8 HGGGGGGFGGGGFGSR Unmodified 1319.5755 0.57554478 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 1 2 2 1 73.078 62.683 2;3 0.0016596 4 49279 20150910_Q1_SA_NiHu_Masterprac_group15_C 58.824 48.515 156580000 11215000 28052000 39269000 0 32928000 45112000 + 2930 302 2896 12813;12814;12815;12816;12817;12818;12819;12820 8496;8497;8498;8499 8497 4 HGGGGGGFGGGGFGSRSLVGLGGTK Unmodified 2132.0511 0.051147728 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 2 130.72 130.72 3;4 2.9015E-163 2 83664 20150910_Q1_SA_NiHu_Masterprac_group13_B 142.27 132.03 93137000 0 0 0 93137000 0 0 + 2931 302 2897 12821;12822 8500;8501 8500 2 HGGGGGGGSGPSAGSGGGGFGGSAAVAAATASGGK Unmodified 2629.1865 0.18653159 1126 Q15022 SUZ12 Polycomb protein SUZ12 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 108.96 101.77 3 2.9409E-17 7 69328 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.977 49.365 8212700 1654300 1580100 1416500 1530200 0 2031600 2932 1126 2898 12823;12824;12825;12826;12827 8502;8503;8504;8505;8506;8507;8508 8506 7 HGHLCPIDTGLIEK Unmodified 1588.8032 0.80316145 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 2 2 119.23 108.31 2;3 2.1915E-104 4 74044 20150910_Q1_SA_NiHu_Masterprac_group15_B 147.73 110.37 18128000 0 0 3953200 0 0 14174000 2933 487 2899 12828;12829;12830;12831 8509;8510;8511;8512 8512 4 HGIGTDATHAEHIETIKAR Unmodified 2056.045 0.044999718 93 B4DSJ0;B4DK80;Q13472-2;Q13472 TOP3A DNA topoisomerase;DNA topoisomerase 3-alpha yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 73.721 72.466 4 0.033468 1 50163 20150910_Q1_SA_NiHu_Masterprac_group15_B 34.586 27.737 1861500 0 0 0 0 0 1861500 2934 93 2900 12832 8513 8513 1 HGISWSPEEVEEARK Unmodified 1752.8431 0.84311201 1664 Q9Y6X8 ZHX2 Zinc fingers and homeoboxes protein 2 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 119.02 108.51 3 0.027182 1 74450 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.599 35.346 1940900 0 0 0 0 721090 1219800 2935 1664 2901 12833;12834 8514 8514 0 HGKAPILIATDVASR Unmodified 1547.8784 0.87837531 853 P17844;E7ETL9 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 2 1 114.26 104.72 3 2.7579E-08 3 68967 20150910_Q1_SA_NiHu_Masterprac_group10_B 95.822 61.054 73279000 0 10676000 5896100 3667300 13938000 39101000 2936 853 2902 12835;12836;12837;12838;12839;12840 8515;8516;8517 8517 3 HGKNPVMELNEK Unmodified 1394.6976 0.69763375 243 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;C9JFV5;Q12906;G5E9M5;B4DFG4 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 66.205 59.737 3 0.0078298 2 42140 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.419 17.917 8180500 0 1433900 0 0 2283500 4463100 2937 243 2903 12841;12842;12843 8518;8519 8518 2 HGKPTDSTPATWK Unmodified 1424.7048 0.70482762 733 O60832;O60832-2;H7C2Q2 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 54.387 48.141 3 2.5486E-24 6 40854 20150910_Q1_SA_NiHu_Masterprac_group15_C 117.27 85.672 34422000 6432900 4661500 193270 3045700 11858000 8230200 2938 733 2904 12844;12845;12846;12847;12848;12849;12850 8520;8521;8522;8523;8524;8525 8524 6 HGKPTDSTPATWKQEYVDYSESAK Unmodified 2724.2667 0.26673897 733 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 124.78 111.97 4 1.4057E-07 4 79959 20150910_Q1_SA_NiHu_Masterprac_group13_C 63.536 53.39 22578000 10139000 0 8251300 2405500 1782400 0 2939 733 2905 12851;12852;12853;12854 8526;8527;8528;8529 8527 4 HGLAHDEMKSPREPGYK Unmodified 1950.937 0.93702917 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 54.227 53.699 4 0.0065223 2 38191 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.438 34.61 2091600 0 0 0 927810 0 1163800 2940 1639 2906 12855;12856 8530;8531 8531 2 HGLQGASLGHAAAAQAHLSCR Unmodified 2112.0395 0.039537184 1199 Q5TGY3 AHDC1 AT-hook DNA-binding motif-containing protein 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 95.69 88.604 4 2.2455E-05 2 60597 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.669 44.776 5720000 0 1052000 1408900 0 0 3259200 2941 1199 2907 12857;12858;12859 8532;8533 8532 2 HGSASFVSLLK Unmodified 1144.6241 0.6240581 1560 Q9NXV6 CDKN2AIP CDKN2A-interacting protein yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 132.63 119.03 2 2.5693E-25 2 83806 20150910_Q1_SA_NiHu_Masterprac_group13_C 134.3 80.238 21633000 0 0 5205500 0 5218600 11209000 2942 1560 2908 12860;12861;12862 8534;8535 8534 1 HGYAPSDLPVKAK Unmodified 1381.7354 0.73539946 657 Q5T7U1;Q9Y5Q8-2;H7BY84;Q9Y5Q8;Q9Y5Q8-3;H0Y5D2;H0Y3Y0;C9J393;H9KV68;Q5T7U0 GTF3C5 General transcription factor 3C polypeptide 5 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 85.514 77.936 3 4.2444E-60 6 53692 20150910_Q1_SA_NiHu_Masterprac_group15_B 134.75 69.059 42516000 3161400 4330700 8298900 4271600 8050100 14403000 2943 657 2909 12863;12864;12865;12866;12867;12868 8536;8537;8538;8539;8540;8541 8538 6 HGYIPGKNRDLK Unmodified 1396.7575 0.75753189 33 Q9ULV4;A7MAP0;B4E3S0;H0YHL7 CORO1C Coronin-1C;Coronin yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 46.808 41.794 3 0.0061123 2 33994 20150910_Q1_SA_NiHu_Masterprac_group13_C 87.568 58.612 2492900 0 912040 980970 0 0 599880 2944 33 2910 12869;12870;12871 8542;8543 8542 2 HHAQETLHYQNLAK Unmodified 1688.8383 0.83830141 39 Q7Z5J4-3;E7EVZ3;Q7Z5J4;A8MTC3;Q7Z5J4-2;C9JWB0;A8MXE8;Q7Z5J4-4;E7ETW1 RAI1 Retinoic acid-induced protein 1 yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 74.92 59.606 4 0.0027846 2 47405 20150910_Q1_SA_NiHu_Masterprac_group15_C 59.227 44.758 3567400 0 0 2020200 0 1547200 0 2945 39 2911 12872;12873 8544;8545 8545 2 HHFDQPSVAPGK Unmodified 1318.6418 0.64183343 1577 Q9P2B7-2;Q9P2B7 KIAA1430 UPF0501 protein KIAA1430 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 55.798 51.347 3 0.0028879 1 42102 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.864 50.764 2884600 0 531660 0 507070 721500 1124400 2946 1577 2912 12874;12875;12876;12877 8546 8546 1 HHLQPENPGPGGAAPSLEQNR Unmodified 2205.0675 0.067526074 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 88.751 81.87 4 0.03995 1 55864 20150910_Q1_SA_NiHu_Masterprac_group10_B 35.992 23.243 3131100 289420 847780 0 786340 1207500 0 2947 1111 2913 12878;12879;12880;12881 8547 8547 0 HHTDQRDYICEYCAR Unmodified 2022.8425 0.84247686 677 Q96JP5-2;H9KV86;Q96JP5;H3BTR0 ZFP91;ZFP91-CNTF E3 ubiquitin-protein ligase ZFP91 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 2 1 1 85.064 73.274 4 0.00064164 2 56200 20150910_Q1_SA_NiHu_Masterprac_group15_C 73.877 60.706 16060000 4386100 0 2689200 0 4714900 4269600 2948 677 2914 12882;12883;12884;12885;12886 8548;8549 8548 2 HHTLRQAPQPQSSLQR Unmodified 1882.9874 0.98742526 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 56.563 53.753 4 0.0033481 1 38431 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.246 46.553 1492000 0 1492000 0 0 0 0 2949 1344 2915 12887 8550 8550 1 HIENICACGK Unmodified 1200.538 0.53796198 1633 Q9Y2K1;Q9Y2K1-2 ZBTB1 Zinc finger and BTB domain-containing protein 1 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 52.485 46.461 2 0.010239 4 33494 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.841 48.715 5500900 538710 1109700 1332500 545500 553830 1420700 2950 1633 2916 12888;12889;12890;12891;12892;12893 8551;8552;8553;8554 8552 4 HIGVGMYQHDVSQTLLK Oxidation (M) 1940.9778 0.97783135 1302 Q8N5C6;Q8N5C6-2;B7Z6X7 SRBD1 S1 RNA-binding domain-containing protein 1 yes no 0 1 0 By matching By matching By matching By matching By matching By MS/MS 1 130.23 125.27 3 1.146E-13 1 84985 20150910_Q1_SA_NiHu_Masterprac_group15_B 100.68 79.831 33463000 0 0 0 0 0 33463000 2951 1302 2917 12894 8555 8555 149 1 HIGYDDSSKGFDYK Unmodified 1630.7264 0.72635092 106 B4DN45;P31153 MAT2A S-adenosylmethionine synthase;S-adenosylmethionine synthase isoform type-2 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 94.118 86.598 3 0.0015157 2 59320 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.03 58.084 4346300 328130 1102100 0 0 1342300 1573700 2952 106 2918 12895;12896;12897;12898 8556;8557 8556 2 HILEMNFSK Unmodified 1117.559 0.559015 212 B7ZM82;B3KVH1;O95785;O95785-2 WIZ Protein Wiz yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 117.36 110.26 2 0.015957 1 75385 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.533 30.898 3246100 0 0 0 545500 152480 2548100 2953 212 2919 12899;12900;12901 8558 8558 1 HINPVAASLIQK Unmodified 1289.7456 0.74557022 962 P53350;B4E083;I3L309;I3L2H5 PLK1 Serine/threonine-protein kinase PLK1 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 1 2 1 1 2 119 108.78 2;3 6.3071E-12 6 76990 20150910_Q1_SA_NiHu_Masterprac_group15_C 108.68 49.42 35320000 3876400 238150 5469800 1106300 3465200 21164000 2954 962 2920 12902;12903;12904;12905;12906;12907;12908;12909;12910 8559;8560;8561;8562;8563;8564 8562 6 HIQSNLDFSPVNSASSEENVK Unmodified 2301.0873 0.087318043 358 O14757-2;F5H7S4;O14757;E7EPP6 CHEK1 Serine/threonine-protein kinase Chk1 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 129.23 119.73 3 2.8558E-111 3 84823 20150910_Q1_SA_NiHu_Masterprac_group15_B 132.52 108.42 90190000 9186700 6600700 16609000 1168700 17058000 39566000 2955 358 2921 12911;12912;12913;12914;12915;12916 8565;8566;8567 8565 3 HITTLQASFLTK Unmodified 1358.7558 0.75580056 1605 Q9UL25 RAB21 Ras-related protein Rab-21 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 2 2 131.32 128.54 2;3 0.0027404 4 83678 20150910_Q1_SA_NiHu_Masterprac_group10_B 73.36 49.649 19798000 0 5195500 0 0 0 14603000 2956 1605 2922 12917;12918;12919;12920 8568;8569;8570;8571 8571 4 HKEPGSGSGGGVYWVDSQQK Unmodified 2101.9817 0.98173076 1532 Q9NQT5-2;Q9NQT5 EXOSC3 Exosome complex component RRP40 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 88.903 82.72 3 0.00023137 1 56611 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.488 41.255 4760600 0 0 944060 426110 0 3390400 2957 1532 2923 12921;12922;12923 8572 8572 1 HKLEVLESQLSEGSQK Unmodified 1810.9425 0.94249171 316 D6RCT6;D6R9E3;Q9BWT6 MND1 Meiotic nuclear division protein 1 homolog yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 107.55 97.402 3 0.037088 1 66298 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.477 14.251 2496700 0 0 0 0 578690 1918000 2958 316 2924 12924;12925 8573 8573 1 HLAAVEERKIK Unmodified 1292.7565 0.75646926 1365;539 Q92922;Q8TAQ2-2;F8VTJ5;Q8TAQ2;F8VXC8 SMARCC1;SMARCC2 SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2 no no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 52.118 40.739 3 0.016841 1 33195 20150910_Q1_SA_NiHu_Masterprac_group13_C 72.321 42.317 2096700 0 0 2096700 0 0 0 2959 1365;539 2925 12926 8574 8574 1 HLAESESLLTSPPK Unmodified 1507.7882 0.7882229 1122 Q14CA3;Q14669;Q14CF1 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 2 1 1 2 110.53 102.98 2;3 9.4774E-05 2 70345 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.529 55.411 5904300 0 1362800 755760 0 234920 3550800 2960 1122 2926 12927;12928;12929;12930;12931;12932 8575;8576 8576 1 HLAGLGLTEAIDKNK Unmodified 1578.873 0.87295558 108 E9PKH2;B4DN87;P50454 SERPINH1 Serpin H1 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 124.97 113.75 3 1.4994E-06 4 81004 20150910_Q1_SA_NiHu_Masterprac_group13_C 94.781 73.386 14085000 2445300 0 3775500 1205400 1574000 5084700 2961 108 2927 12933;12934;12935;12936;12937 8577;8578;8579;8580 8577 4 HLAGLGLTEAIDKNKADLSR Unmodified 2121.1542 0.15421582 108 E9PKH2;B4DN87;P50454 SERPINH1 Serpin H1 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 130.89 130.89 4 1.018E-65 1 83844 20150910_Q1_SA_NiHu_Masterprac_group13_B 120.99 98.026 60468000 0 0 0 60468000 0 0 2962 108 2928 12938 8581 8581 1 HLCEPGADGAETFADGVPREGLSR Unmodified 2540.1714 0.1713988 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 no no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 2 130.86 128.08 3;4 1.2612E-22 4 85885 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.011 73.287 39606000 0 19059000 0 0 0 20547000 2963 486 2929 12939;12940;12941;12942 8582;8583;8584;8585 8583 3 HLCEPGADGSETFADGVPR Unmodified 2013.8851 0.88505318 430 Q12873;E9PG89;Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 114.86 113.85 3 0.015674 1 73891 20150910_Q1_SA_NiHu_Masterprac_group10_B 37.85 28.806 821770 0 821770 0 0 0 0 2964 430 2930 12943 8586 8586 1 HLCQQLQAEQAAAEK Unmodified 1723.8312 0.83116712 1121 Q14980-2;Q14980;F5H2L0;H0YFY6 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 3 2 86.068 77.786 2;3 1.5735E-124 11 60449 20150910_Q1_SA_NiHu_Masterprac_group13_C 149.22 127.9 115090000 15902000 14071000 23131000 14223000 25616000 22144000 2965 1121 2931 12944;12945;12946;12947;12948;12949;12950;12951;12952;12953;12954;12955;12956;12957;12958 8587;8588;8589;8590;8591;8592;8593;8594;8595;8596;8597 8589 11 HLEAQGTSLPK Unmodified 1179.6248 0.62478638 49 A8MVI8;Q6NW34-2;Q6NW34;E7ENV3 C3orf17 Uncharacterized protein C3orf17 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 67.857 60.646 2 0.0026696 6 48022 20150910_Q1_SA_NiHu_Masterprac_group15_C 86.344 48.648 11063000 2285700 1304200 1933300 1097000 2057600 2385000 2966 49 2932 12959;12960;12961;12962;12963;12964 8598;8599;8600;8601;8602;8603 8601 6 HLEAQGTSLPKK Unmodified 1307.7197 0.7197494 49 A8MVI8;Q6NW34-2;Q6NW34;E7ENV3 C3orf17 Uncharacterized protein C3orf17 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 51.191 45.266 3 0.0033385 3 37722 20150910_Q1_SA_NiHu_Masterprac_group15_C 62.799 48.008 4119200 623690 472010 445910 365980 930080 1281500 2967 49 2933 12965;12966;12967;12968;12969;12970 8604;8605;8606 8605 3 HLEHAPSPSDVSNAPEVK Unmodified 1912.9279 0.92790427 516 Q9Y4C1;F5H4E6;F5H070;F8WE62 KDM3A Lysine-specific demethylase 3A yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 90.622 82.893 3 0.00052278 4 56813 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.01 69.89 7634200 1194100 1107700 1511000 806320 986560 2028500 2968 516 2934 12971;12972;12973;12974;12975;12976 8607;8608;8609;8610 8608 3 HLEQQQGQLEVPEQQVGQPK Unmodified 2299.1557 0.15567238 802 P07476 IVL Involucrin yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 115.39 98.143 3 0.0010484 2 70679 20150910_Q1_SA_NiHu_Masterprac_group15_C 52.866 32.615 1259600 0 0 0 0 1259600 0 2969 802 2935 12977 8611;8612 8612 2 HLESFYEKPPPGLIK Unmodified 1753.9403 0.94030686 1333 Q8TA86 RP9 Retinitis pigmentosa 9 protein yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 130.83 130.83 3 0.00080673 1 83776 20150910_Q1_SA_NiHu_Masterprac_group13_B 78.401 66.48 3525800 0 0 0 3525800 0 0 2970 1333 2936 12978 8613 8613 1 HLIVLINK Unmodified 948.61204 0.61203685 642 H3BR35;P15170;P15170-2;F5GWG9;Q8IYD1 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 114.95 105.91 2 5.0788E-25 4 77295 20150910_Q1_SA_NiHu_Masterprac_group13_C 134.66 69.417 15757000 997820 2073300 2170500 957290 1302900 8254700 2971 642 2937 12979;12980;12981;12982;12983;12984 8614;8615;8616;8617 8614 4 HLKPEQPADGVSAVDLEK Unmodified 1931.9953 0.99525556 1422 Q96T58 SPEN Msx2-interacting protein yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 106.76 98.017 3 0.003593 3 70635 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.537 30.25 9760200 1669100 1992100 1409000 779340 1987800 1922900 2972 1422 2938 12985;12986;12987;12988;12989;12990 8618;8619;8620 8620 1 HLLEGQNASVLAYGPTGAGK Unmodified 1982.0221 0.022139011 1115 Q14807;B7Z265;H3BRB3;H3BTH5 KIF22 Kinesin-like protein KIF22 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 131.55 124.47 3 1.4803E-122 4 83683 20150910_Q1_SA_NiHu_Masterprac_group10_B 141.74 119.54 45434000 6292100 16268000 0 0 0 22874000 2973 1115 2939 12991;12992;12993 8621;8622;8623;8624 8623 4 HLLSYCPMPEK Unmodified 1373.6472 0.64717808 1108 Q14641 INSL4 Early placenta insulin-like peptide;Early placenta insulin-like peptide B chain;Early placenta insulin-like peptide A chain yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 112.85 105.16 2 0.0054004 3 72019 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.289 51.281 3010500 0 535580 552790 0 0 1922200 2974 1108 2940 12994;12995;12996 8625;8626;8627 8626 3 HLLVSNVGGDGEEIER Unmodified 1722.8537 0.8536767 100 E9PF10;O75694-2;B4DLT2;O75694 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 116.86 107.63 3 0.0026063 1 73690 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.281 41.489 1893900 713170 0 0 0 0 1180700 2975 100 2941 12997;12998 8628 8628 1 HLMLLSR Unmodified 868.49529 0.49529253 896 P35251-2;P35251 RFC1 Replication factor C subunit 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 102.65 95.384 2 0.040617 1 65338 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.741 51.914 4926200 0 652620 0 0 1171100 3102500 2976 896 2942 12999;13000;13001 8629 8629 1 HLPESLYPHTYNPK Unmodified 1694.8417 0.84165545 1351 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 2 2 1 2 2 2 112.61 104.35 3 0.00027685 2 71569 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.78 45.566 10028000 1195200 1412300 698980 1447400 799610 4474400 2977 1351 2943 13002;13003;13004;13005;13006;13007;13008;13009;13010;13011;13012 8630;8631 8631 1 HLPNLQTHKENPVLDVVSNPEQTAGEERGDGNSGFNEHLK Unmodified 4406.1276 0.12756673 1063 Q12888;Q12888-2;A6NNK5;F8VY86;C9JXV0 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 131.4 126.44 6 0.00079795 1 86280 20150910_Q1_SA_NiHu_Masterprac_group15_B 20.78 14.909 14573000 0 0 0 0 0 14573000 2978 1063 2944 13013 8632 8632 1 HLQLAIRNDEELNK Unmodified 1691.8955 0.89548193 792 Q99878;Q96KK5;Q9BTM1;Q16777;Q93077;Q7L7L0;Q6FI13;P20671;P0C0S8;P04908;H0YFX9;Q96QV6;P16104;Q9BTM1-2;C9JE22 HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST1H2AC;HIST3H2A;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AB;HIST1H2AA;H2AFX Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E;Histone H2A;Histone H2A type 1-A;Histone H2A.x yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 107.89 97.611 3 1.5215E-06 2 66618 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.094 70.563 22532000 2010800 13129000 1371100 0 2675500 3345200 2979 792 2945 13014;13015;13016;13017;13018 8633;8634 8633 2 HLSLQPFQK Unmodified 1096.6029 0.60292873 1357 Q92766-3;Q92766;Q92766-2;C9JU34 RREB1 Ras-responsive element-binding protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 109.73 103.97 2 0.023859 2 70954 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.704 28.399 4879000 0 1097800 1096600 702910 0 1981700 2980 1357 2946 13019;13020;13021;13022 8635;8636 8635 2 HLSSQNRYFSEADKIK Unmodified 1921.9646 0.96462413 610 H0Y4R1;P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 94.205 86.36 4 0.0003 7 63890 20150910_Q1_SA_NiHu_Masterprac_group15_C 71.529 53.566 12432000 1447600 1156100 1258200 1790700 4025800 2753500 2981 610 2947 13023;13024;13025;13026;13027;13028 8637;8638;8639;8640;8641;8642;8643 8640 5 HLTDPSYGIPREQQK Unmodified 1767.8904 0.89039656 254 F8WDS4;F8WAK7;F8WBB9;F8WCS3;C9JJG2;C9JS83;F8W898;Q9H9Y6-2;Q9H9Y6;F5GZX4 POLR1B DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA2 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 89.44 80.55 3 0.0027522 1 60463 20150910_Q1_SA_NiHu_Masterprac_group15_C 64.104 51.041 4277900 614150 0 0 0 1332000 2331700 2982 254 2948 13029;13030;13031 8644 8644 1 HLTYNDFINK Unmodified 1263.6248 0.62478638 1035 Q02880-2;Q02880;E9PCY5 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 116.32 111.75 2 1.3958E-115 1 76339 20150910_Q1_SA_NiHu_Masterprac_group15_B 152.54 113.76 6604000 0 0 0 0 0 6604000 2983 1035 2949 13032 8645 8645 1 HLVAAATAQRPTHR Unmodified 1527.8382 0.83824183 247 I3L4J3;Q7Z3B3;C9JHY2;I3L0X0;B3KT49;E9PCT4;Q7Z3B3-2 KANSL1;KIAA1267 KAT8 regulatory NSL complex subunit 1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 45.365 38.872 3 0.024941 2 27425 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.405 31.483 1438900 0 264210 475500 0 306190 393040 2984 247 2950 13033;13034;13035;13036 8646;8647 8647 2 HLVDEPQNLIK Unmodified 1304.7089 0.70885036 294 CON__P02769 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 119.21 109.06 2 0.0097609 1 74742 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.179 28.733 6736800 0 1500900 765480 0 1281000 3189500 + 2985 294 2951 13037;13038;13039;13040 8648 8648 1 HLVDEPQNLIKQNCDQFEK Unmodified 2354.1325 0.1324941 294 CON__P02769 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 130.92 122.17 3;4 0 11 81892 20150910_Q1_SA_NiHu_Masterprac_group13_C 205.98 181.56 355300000 33269000 54562000 54367000 48565000 6156200 158380000 + 2986 294 2952 13041;13042;13043;13044;13045;13046;13047;13048;13049;13050;13051 8649;8650;8651;8652;8653;8654;8655;8656;8657;8658;8659 8652 10 HLVQQEGQLEQQER Unmodified 1720.8493 0.84926002 802 P07476 IVL Involucrin yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 80.903 65.262 3 0.00076162 1 50940 20150910_Q1_SA_NiHu_Masterprac_group15_C 85.837 72.672 659280 0 0 0 0 659280 0 2987 802 2953 13052 8660 8660 1 HLYEEYVEKPLK Unmodified 1546.8031 0.80314468 1529 Q9NPI1;Q9NPI1-2 BRD7 Bromodomain-containing protein 7 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 104.36 101.1 3 0.0019127 1 68999 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.821 57.878 2017000 0 0 0 0 0 2017000 2988 1529 2954 13053 8661 8661 1 HMGPSRNLLLNGK Unmodified 1435.7718 0.77180175 1078 Q13330;Q13330-3;E7ESY4;E7EN71;H0Y4T7;F8W9Y9;C9JJM0;H0YIV8 MTA1 Metastasis-associated protein MTA1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 93.801 84.15 3 0.0022762 1 64287 20150910_Q1_SA_NiHu_Masterprac_group13_C 66.663 24.421 5067600 0 1501700 3566000 0 0 0 2989 1078 2955 13054;13055 8662 8662 1 HMIDGRWCDCKLPNSK Unmodified 2015.9128 0.91280503 1073 Q13148;Q13148-2;B1AKP7;G3V162;B4DJ45 TARDBP TAR DNA-binding protein 43 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 106.78 96.554 4 0.0024128 1 65871 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.077 51.39 26340000 0 0 6728200 0 0 19612000 2990 1073 2956 13056;13057 8663 8663 1 HNADALSDRFEK Unmodified 1401.6637 0.66369108 1592 Q9UHB7 AFF4 AF4/FMR2 family member 4 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 66.303 65.148 3 0.0063126 1 45457 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.091 42.855 622150 0 0 0 0 0 622150 2991 1592 2957 13058 8664 8664 1 HNAVIEHLKQK Unmodified 1315.7361 0.73606817 1061 Q12830-4;Q12830-2;Q12830;E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 49.962 43.645 3 0.022638 1 35830 20150910_Q1_SA_NiHu_Masterprac_group13_C 54.343 12.654 1515800 0 0 675200 116310 183940 540330 2992 1061 2958 13059;13060;13061;13062 8665 8665 1 HNGAAEPEPEAETAR Unmodified 1577.707 0.70701246 1650 Q9Y446 PKP3 Plakophilin-3 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 45.67 41.796 3 0.023868 1 29784 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.211 40.211 3217900 0 374340 0 335650 735080 1772900 2993 1650 2959 13063;13064;13065;13066 8666 8666 1 HNGAAEPEPEAETARGTSR Unmodified 1978.9093 0.9092941 1650 Q9Y446 PKP3 Plakophilin-3 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 47.624 42.068 3 0.015186 1 35285 20150910_Q1_SA_NiHu_Masterprac_group15_C 39.338 28.571 6488200 708530 1176000 511720 457320 932830 2701800 2994 1650 2960 13067;13068;13069;13070;13071;13072 8667 8667 1 HNGICIYFSR Unmodified 1265.5975 0.59752577 100 E9PF10;O75694-2;B4DLT2;O75694 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 126.76 121.9 3 0.0080367 1 82450 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.387 36.82 1641400 0 0 0 0 0 1641400 2995 100 2961 13073 8668 8668 1 HNLMTVEQNNGSSQK Unmodified 1685.7791 0.77913155 514 F5H2U2;Q13523;H0YEC8;H0YDJ3 PRPF4B Serine/threonine-protein kinase PRP4 homolog yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 63.592 55.696 3 0.0020159 1 39434 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.634 42.896 1503600 0 0 0 0 673390 830210 2996 514 2962 13074;13075 8669 8669 1 HNNQQALSHSIEEGLK Unmodified 1803.8864 0.88637381 1424 Q99496 RNF2 E3 ubiquitin-protein ligase RING2 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 98.685 89.235 3 0.0021522 1 61167 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.46 42.595 1698400 0 0 0 0 340380 1358000 2997 1424 2963 13076;13077 8670 8670 1 HNRTPENFPCK Unmodified 1398.6463 0.64626688 295 CON__P06868;P00747 PLG Plasminogen;Plasmin heavy chain A;Activation peptide;Angiostatin;Plasmin heavy chain A, short form;Plasmin light chain B yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 48.506 42.95 3 0.0014763 4 30619 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.658 59.499 16066000 0 3895600 2119700 815800 2620800 6614300 + 2998 295 2964 13078;13079;13080;13081;13082 8671;8672;8673;8674 8673 4 HPYLPINSAAIK Unmodified 1322.7347 0.73467118 1078 Q13330;Q13330-3;E7ESY4;E7EN71;H0Y4T7;F8W9Y9 MTA1 Metastasis-associated protein MTA1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 127.24 122.27 2 0.0019619 1 82844 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.713 38.524 1812400 0 0 0 0 0 1812400 2999 1078 2965 13083 8675 8675 1 HQACLLLQK Unmodified 1109.6015 0.60154852 682 I3L1L3;Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 81.901 74.356 2 0.0064746 4 56788 20150910_Q1_SA_NiHu_Masterprac_group15_C 96.034 72.003 11200000 1436800 842430 786500 606030 2544300 4983500 3000 682 2966 13084;13085;13086;13087;13088;13089 8676;8677;8678;8679 8678 4 HQAVQLPREGQEDQGLTK Unmodified 2033.029 0.029015303 774 O95758-1;O95758-6;O95758-2;O95758;O95758-5;O95758-4;B1ALY6 PTBP3 Polypyrimidine tract-binding protein 3 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 2 2 1 2 2 92.86 84.412 3;4 0.010354 4 57259 20150910_Q1_SA_NiHu_Masterprac_group13_B 41.695 32.687 32866000 7144100 5019000 8173900 2973100 1565100 7990800 3001 774 2967 13090;13091;13092;13093;13094;13095;13096;13097;13098;13099 8680;8681;8682;8683 8680 4 HQEGEIFDTEKEK Unmodified 1588.7369 0.73691561 551 F8W181;Q02878 RPL6 60S ribosomal protein L6 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 60.952 59.798 3 0.0022755 2 42152 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.352 47.802 1199200 0 0 0 0 0 1199200 3002 551 2968 13100 8684;8685 8685 2 HQEVQDQDPVFQGSDSSGYQSDHKK Unmodified 2845.2539 0.25394245 1164 Q3B726 TWISTNB DNA-directed RNA polymerase I subunit RPA43 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 75.632 73.549 4 0.0020778 2 51047 20150910_Q1_SA_NiHu_Masterprac_group10_B 47.554 39.16 3444700 0 987640 0 0 0 2457100 3003 1164 2969 13101;13102 8686;8687 8687 2 HQEYLNSILQHAK Unmodified 1579.8107 0.81068967 952;951 P51531-2;P51531;F6VDE0;P51532-5;P51532-2;P51532-3;P51532-4;P51532;Q9HBD4;F5H0X5 SMARCA2;SMARCA4 Probable global transcription activator SNF2L2;Transcription activator BRG1 no no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 2 2 1 2 123.28 117.76 3 8.7167E-47 5 76127 20150910_Q1_SA_NiHu_Masterprac_group10_C 128.35 105.86 92428000 32831000 5644600 0 7584100 15574000 30794000 3004 951;952 2970 13103;13104;13105;13106;13107;13108;13109;13110 8688;8689;8690;8691;8692 8692 5 HQGLPQEVLNENLLR Unmodified 1758.9377 0.9376811 288 CON__P02662 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 1 2 133.52 133.22 2;3 2.714E-230 4 86674 20150910_Q1_SA_NiHu_Masterprac_group13_B 178.22 148.75 443790000 0 267820000 0 175970000 0 0 + 3005 288 2971 13111;13112;13113;13114;13115 8693;8694;8695;8696 8693 4 HQGVMVGMGQK Unmodified 1170.5638 0.5637828 164 F5H0N0;B4E335;P63261;P60709;I3L3I4;G5E9R0;I3L3R2;E7EVS6;I3L3I0;I3L1U9;E7EQV5;Q5T8M8;A6NL76;P68133;P68032;Q5T8M7;F5H1C1;P63267;P62736;C9JUM1;C9JZR7;C9JTX5;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;Q562R1 ACTG1;ACTB;ACTA1;ACTC1;ACTG2;ACTA2;ACTBL2 Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 58.826 57.505 2 9.3065E-08 2 40585 20150910_Q1_SA_NiHu_Masterprac_group15_B 108.31 80.43 7017500 0 938560 0 784790 0 5294200 3006 164 2972 13116;13117;13118 8697;8698 8698 2 HQLEAHGAGGEPDAPK Unmodified 1612.7594 0.75938238 1545 Q9NUA8;F8WAI8 ZBTB40 Zinc finger and BTB domain-containing protein 40 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 2 1 2 2 1 2 46.7 41.496 3;4 0.00080319 4 29537 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.141 65.496 9629500 2128300 844760 1327800 2021300 620660 2686600 3007 1545 2973 13119;13120;13121;13122;13123;13124;13125;13126;13127;13128 8699;8700;8701;8702 8700 3 HQLEAHGAGGEPDAPKK Unmodified 1740.8543 0.8543454 1545 Q9NUA8;F8WAI8 ZBTB40 Zinc finger and BTB domain-containing protein 40 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 36.997 33.437 4 0.035271 1 23176 20150910_Q1_SA_NiHu_Masterprac_group15_B 33.682 16.686 2345600 595780 240350 492160 474730 0 542610 3008 1545 2974 13129;13130;13131;13132;13133 8703 8703 0 HQLEAHGAGGEPDAPKKK Unmodified 1868.9493 0.94930842 1545 Q9NUA8;F8WAI8 ZBTB40 Zinc finger and BTB domain-containing protein 40 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 30.949 26.72 4 0.0015679 1 21831 20150910_Q1_SA_NiHu_Masterprac_group13_C 55.912 42.491 3839200 292290 0 2894900 0 0 652010 3009 1545 2975 13134;13135;13136 8704 8704 1 HQLEEELR Unmodified 1052.5251 0.52507234 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 57.997 56.676 2 0.024422 2 40030 20150910_Q1_SA_NiHu_Masterprac_group10_B 76.1 37.797 7310800 0 1700200 0 530730 0 5079900 3010 1611 2976 13137;13138;13139 8705;8706 8706 2 HQLEEELRQQK Unmodified 1436.7372 0.73719038 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 2 1 2 60.058 54.051 2;3 5.6471E-55 6 38280 20150910_Q1_SA_NiHu_Masterprac_group13_B 138.25 90.541 231140000 13201000 55494000 8847300 36258000 7468700 109870000 3011 1611 2977 13140;13141;13142;13143;13144;13145;13146;13147;13148;13149;13150 8707;8708;8709;8710;8711;8712 8707 5 HQLNELGSESAKIK Unmodified 1552.8209 0.82092001 1222 Q6KC79-2;Q6KC79 NIPBL Nipped-B-like protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 81.927 74.382 3 0.0011276 1 51574 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.968 55.162 16637000 1060900 3056700 3015200 1684600 3642700 4177200 3012 1222 2978 13151;13152;13153;13154;13155;13156 8713 8713 1 HQNIHTGEKPYECNECGK Unmodified 2199.9426 0.94258484 1131 Q15072 ZNF146 Zinc finger protein OZF yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 2 2 44.285 38.781 3;4 0.00065363 5 27228 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.01 77.538 11984000 0 1036300 2419300 3511700 1965000 3051500 3013 1131 2979 13157;13158;13159;13160;13161;13162;13163;13164;13165 8714;8715;8716;8717;8718 8716 5 HQNVQLPR Unmodified 990.53591 0.5359118 882 P26599;P26599-2;P26599-3;A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 53.286 52.759 2 0.024805 1 37336 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.738 46.78 32128000 0 0 0 5292000 0 26836000 3014 882 2980 13166;13167 8719 8719 1 HQNVQLPREGQEDQGLTK Unmodified 2076.0348 0.034828962 882 P26599;P26599-2;P26599-3;A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 3 87.844 80.525 3;4 2.0967E-271 13 62224 20150910_Q1_SA_NiHu_Masterprac_group13_C 173.19 151.14 812950000 106630000 119660000 204020000 71493000 110610000 200530000 3015 882 2981 13168;13169;13170;13171;13172;13173;13174;13175;13176;13177;13178;13179;13180;13181 8720;8721;8722;8723;8724;8725;8726;8727;8728;8729;8730;8731;8732 8723 13 HQQIPLHSPPSK Unmodified 1367.731 0.73098279 398 E7EX82;Q8NDX5-2;Q8NDX5;Q8NDX5-7;C9JAU4 PHC3 Polyhomeotic-like protein 3 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 61.304 54.706 3 0.0043953 4 39094 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.121 45.497 7048500 0 1334300 978940 654570 2018300 2062400 3016 398 2982 13182;13183;13184;13185;13186 8733;8734;8735;8736 8736 4 HQSFVLVGETGSGK Unmodified 1444.731 0.73104237 524 F5H6K0;O43143 DHX15 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 3 103.82 96.559 2;3 0.00060167 7 65931 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.138 69.885 20292000 2031600 2199500 1597700 0 0 14463000 3017 524 2983 13187;13188;13189;13190;13191;13192;13193 8737;8738;8739;8740;8741;8742;8743 8739 7 HQTLELEK Unmodified 996.52401 0.52400971 1562 Q9NYD6;P31260-2;D6RAR5;E7EN04;H0Y2M1;P31269;P28358;P31260 HOXC10;HOXA10;HOXA9;HOXD10 Homeobox protein Hox-C10;Homeobox protein Hox-A10;Homeobox protein Hox-A9;Homeobox protein Hox-D10 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 60.371 52.283 2 0.0061273 1 43057 20150910_Q1_SA_NiHu_Masterprac_group13_C 95.358 31.939 5504700 462450 1939700 3102600 0 0 0 3018 1562 2984 13194;13195;13196 8744 8744 1 HQVEQLSSSLKQK Unmodified 1510.8104 0.81035532 1121 Q14980-2;Q14980;F5H4J1;F5H6Y5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 64.056 55.972 3 5.5937E-29 2 39480 20150910_Q1_SA_NiHu_Masterprac_group15_B 116.9 68.714 4683600 0 1289600 945670 414400 2033900 0 3019 1121 2985 13197;13198;13199;13200;13201 8745;8746 8745 2 HQVSVEGTNQTDVK Unmodified 1540.7481 0.74814899 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 52.335 48.325 3 0.00092155 2 34371 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.173 67.039 759260 146120 0 0 0 0 613140 3020 1109 2986 13202;13203 8747;8748 8748 2 HQVSVEGTNQTDVKAVGGPAK Unmodified 2121.0814 0.081444804 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 77.904 70.544 3 0.00063636 2 48699 20150910_Q1_SA_NiHu_Masterprac_group13_B 54.964 40.084 3106300 0 500920 687230 889600 518680 509910 3021 1109 2987 13204;13205;13206;13207;13208 8749;8750 8749 2 HRELIMGEDPAQPR Unmodified 1647.8151 0.81512312 430 Q12873;E9PG89;Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 85.304 83.648 3 0.01549 1 57271 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.217 31.419 1650600 0 0 0 0 0 1650600 3022 430 2988 13209 8751 8751 1 HRKEVDYSDSLTEK Unmodified 1705.8271 0.8271276 952 P51532-5;P51532-2;P51532-3;P51532-4;P51532;Q9HBD4;F5H0X5;H0YGM3 SMARCA4 Transcription activator BRG1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 60.989 53.293 3 0.0080621 1 38030 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.102 67.102 1848200 0 0 0 0 580260 1267900 3023 952 2989 13210;13211 8752 8752 0 HRLLSQVVRPQESR Unmodified 1703.9543 0.95433422 1188 Q5T200-2;Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 79.543 70.894 4 0.022721 1 49093 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.03 26.848 3628900 0 0 0 0 1537500 2091400 3024 1188 2990 13212;13213 8753 8753 1 HRQMINLAESK Unmodified 1325.6874 0.68740341 1096 Q14149 MORC3 MORC family CW-type zinc finger protein 3 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 61.541 60.386 3 0.014549 1 42381 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.625 54.913 0 0 0 0 0 0 0 3025 1096 2991 13214 8754 8754 1 HRQVGNAVPPPLAK Unmodified 1482.8419 0.84193022 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 75.777 66.703 3 0.0083349 1 46245 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.463 42.391 4803400 0 320640 761120 0 1050400 2671300 3026 487 2992 13215;13216;13217;13218 8755 8755 1 HSAEAIALEQSR Unmodified 1310.6579 0.65787742 7 Q96KQ7-2;B0UZY3;Q96KQ7;B0UZY0;A2ABF8;B0UZY1;A2ABF9;H0YIM0;H0YHA9;A2BED6;A2BED7 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 79.332 68.429 3 0.0033224 3 48823 20150910_Q1_SA_NiHu_Masterprac_group10_C 66.538 40.126 5053400 1075700 1813000 664440 0 1500200 0 3027 7 2993 13219;13220;13221;13222;13223 8756;8757;8758 8758 3 HSAELIAMEK Unmodified 1127.5645 0.56449431 729 O60293-2;O60293 ZFC3H1 Zinc finger C3H1 domain-containing protein yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 87.999 78.674 2 0.012231 2 59268 20150910_Q1_SA_NiHu_Masterprac_group15_C 70.412 47.092 3456700 0 644120 763520 0 640340 1408700 3028 729 2994 13224;13225;13226;13227 8759;8760 8760 2 HSANCDRLSESSASPQPK Unmodified 1969.8912 0.89120119 15 A6NCU2;B7Z227;A6NHW8;Q8N5Y2-2;Q8N5Y2-3;Q8N5Y2 MSL3 Male-specific lethal 3 homolog yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 47.925 43.583 4 0.011286 2 31116 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.367 29.946 5501000 709380 1069200 886020 727120 0 2109300 3029 15 2995 13228;13229;13230;13231;13232 8761;8762 8762 2 HSEEAEFTPPLK Unmodified 1383.667 0.66704513 1164 Q3B726 TWISTNB DNA-directed RNA polymerase I subunit RPA43 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 117.3 99.951 2 0.018851 1 71699 20150910_Q1_SA_NiHu_Masterprac_group15_C 74.237 54.741 1523900 0 0 0 0 1523900 0 3030 1164 2996 13233 8763 8763 0 HSFNLANHLR Unmodified 1207.621 0.62103841 1419 Q96SL8 FIZ1 Flt3-interacting zinc finger protein 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 92.496 80.899 3 0.011865 1 55383 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.626 50.887 8151000 0 0 620190 0 1849700 5681100 3031 1419 2997 13234;13235;13236 8764 8764 1 HSGAKPLQCEVCGFQCR Unmodified 2032.903 0.90296863 1300 Q8N554-2;Q8N554;A8K186 ZNF276 Zinc finger protein 276 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 93.04 90.883 3 0.011537 1 62120 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.314 28.613 2794800 0 0 0 0 0 2794800 3032 1300 2998 13237 8765 8765 1 HSGNNFKCPHCDFLGDSK Unmodified 2118.9 0.89999174 72 B3KQX0;Q9NPA5-2;E2QRH5;Q5JWM1;Q9NPA5 ZFP64 Zinc finger protein 64 homolog, isoforms 1 and 2;Zinc finger protein 64 homolog, isoforms 3 and 4 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 2 1 2 1 95.405 83.967 4 0.0017007 2 57433 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.201 51.543 11610000 0 0 1887400 868220 3679200 5174800 3033 72 2999 13238;13239;13240;13241;13242;13243 8766;8767 8766 1 HSGPNSADSANDGFVR Unmodified 1629.7132 0.71316047 958 P52597;B4DKS8 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 2 1 66.747 58.518 2;3 1.6758E-05 6 41514 20150910_Q1_SA_NiHu_Masterprac_group10_B 79.471 66.94 13998000 815250 3181600 2160000 887600 2746700 4207000 3034 958 3000 13244;13245;13246;13247;13248;13249;13250 8768;8769;8770;8771;8772;8773 8772 5 HSLAEILR Unmodified 937.53451 0.53451481 565 F8WAJ0;Q9H8H2;Q9H8H2-2 DDX31 Probable ATP-dependent RNA helicase DDX31 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 116.12 108.65 2 0.02216 1 71277 20150910_Q1_SA_NiHu_Masterprac_group10_B 78.113 33.718 12904000 0 1565500 0 0 3710200 7627900 3035 565 3001 13251;13252;13253 8774 8774 1 HSLECTLILTEGDSAK Unmodified 1772.8615 0.86146419 1035 Q02880-2;Q02880;E9PCY5 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 2 131.64 125.56 2;3 1.5448E-249 7 83738 20150910_Q1_SA_NiHu_Masterprac_group10_B 177.04 157.51 173260000 20078000 88478000 0 2559100 0 62143000 3036 1035 3002 13254;13255;13256;13257;13258;13259;13260;13261 8775;8776;8777;8778;8779;8780;8781 8779 7 HSLLEHMSLHSGQK Unmodified 1602.7937 0.7936594 710 O43167 ZBTB24 Zinc finger and BTB domain-containing protein 24 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 93.39 84.542 4 0.029289 1 57772 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.961 18.608 2842000 0 0 383080 213380 1047600 1197900 3037 710 3003 13262;13263;13264;13265 8782 8782 1 HSLVGQGQSSGPR Unmodified 1308.6535 0.65346075 301 P20930;CON__P20930 FLG Filaggrin yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 38.533 37.779 3 0.025523 1 26535 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.436 24.794 205650 0 0 0 0 0 205650 + 3038 301 3004 13266 8783 8783 1 HSNVNLTIFTAR Unmodified 1371.7259 0.72589741 1537 Q9NRW3;Q8IUX4 APOBEC3C;APOBEC3F DNA dC->dU-editing enzyme APOBEC-3C;DNA dC->dU-editing enzyme APOBEC-3F no no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 3 1 2 132.1 128.18 2;3 0 6 87262 20150910_Q1_SA_NiHu_Masterprac_group15_B 215.77 176.19 377250000 3591200 253000000 0 3828700 0 116830000 3039 1537 3005 13267;13268;13269;13270;13271;13272;13273 8784;8785;8786;8787;8788;8789 8785 6 HSRNPATRGLPSTASGR Unmodified 1763.9139 0.91392597 932 P48730-2;B4DIJ9;P48730;Q59FJ7;H7BYT1 CSNK1D Casein kinase I isoform delta yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 42.363 41.51 4 0.015324 1 29670 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.493 27.322 1210500 0 0 0 0 0 1210500 3040 932 3006 13274 8790 8790 1 HSSTPNSSEFSRK Unmodified 1462.6801 0.68006943 1311 Q8N9Q2 SREK1IP1 Protein SREK1IP1 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 39.449 34.125 3 0.0043273 1 27521 20150910_Q1_SA_NiHu_Masterprac_group13_C 57.267 31.354 2670400 420370 0 1192500 380300 296440 380810 3041 1311 3007 13275;13276;13277;13278;13279 8791 8791 1 HSVDSVLTALQDSSK Unmodified 1585.7948 0.79476484 1192 Q5T5X7 BEND3 BEN domain-containing protein 3 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 132.75 132.45 3 0.00021161 2 85612 20150910_Q1_SA_NiHu_Masterprac_group10_B 86.539 60.181 41141000 0 32817000 0 8324600 0 0 3042 1192 3008 13280;13281 8792;8793 8793 2 HSVGVVIGR Unmodified 922.53485 0.53484916 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 2 68.006 61.433 2 6.2868E-42 6 43606 20150910_Q1_SA_NiHu_Masterprac_group15_B 141.52 96.185 459370000 53504000 77446000 66176000 25771000 75897000 160580000 3043 1366 3009 13282;13283;13284;13285;13286;13287;13288;13289 8794;8795;8796;8797;8798;8799 8796 6 HSVGVVIGRSGEMIK Unmodified 1567.8504 0.850446 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 102.46 95.777 3 1.6944E-05 8 65627 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.689 70.564 76234000 14422000 10620000 20376000 16113000 0 14703000 3044 1366 3010 13290;13291;13292;13293;13294 8800;8801;8802;8803;8804;8805;8806;8807 8805 8 HSVGVVIGRSGEMIKK Unmodified 1695.9454 0.94540901 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 2 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 90.762 82.039 4 0.011266 4 55996 20150910_Q1_SA_NiHu_Masterprac_group13_B 43.914 31.382 3934200 0 0 1369600 841010 512730 1210900 3045 1366 3011 13295;13296;13297;13298 8808;8809;8810;8811 8809 4 HTANYDTEERVGSSSSESCAQDLPVLVGEEGEVK Unmodified 3678.6591 0.65914216 547 Q99590-2;F8VXG7;Q99590;F8W028 SCAF11 Protein SCAF11 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 132.22 131.92 4 1.4028E-17 1 85237 20150910_Q1_SA_NiHu_Masterprac_group13_B 58.565 49.029 24448000 0 2936300 0 21512000 0 0 3046 547 3012 13299;13300 8812 8812 1 HTASINDLER Unmodified 1154.568 0.56799978 965 P54132;F5H7R6;H0YNU5 BLM Bloom syndrome protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 72.993 66.358 2 0.002987 1 46291 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.561 74.889 4631400 0 1566500 0 0 723770 2341100 3047 965 3013 13301;13302;13303 8813 8813 1 HTEMITTLK Unmodified 1072.5587 0.55868065 741 O75475 PSIP1 PC4 and SFRS1-interacting protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 82.543 74.069 2 0.0068334 2 51200 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.149 37.025 17394000 540700 0 3511000 1803000 4878000 6661100 3048 741 3014 13304;13305;13306;13307;13308 8814;8815 8814 2 HTEMITTLKK Unmodified 1200.6536 0.65364367 741 O75475 PSIP1 PC4 and SFRS1-interacting protein yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 63.298 55.315 3 0.0014239 4 39312 20150910_Q1_SA_NiHu_Masterprac_group10_B 98.044 52.886 6792600 0 2382500 1806100 490290 2113700 0 3049 741 3015 13309;13310;13311;13312;13313 8816;8817;8818;8819 8819 4 HTGAKPFQCGVCNR Unmodified 1630.7457 0.74566335 9 A2TJX0;B4DL96;Q13887 KLF5 Krueppel-like factor 5 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 53.443 47.318 3 0.0011271 3 33796 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.185 77.185 29182000 2563700 2615400 3666900 3419100 5143200 11774000 3050 9 3016 13314;13315;13316;13317;13318;13319 8820;8821;8822 8820 3 HTGEKPFECPNCHER Unmodified 1896.7995 0.79954941 960 P52739-2;P52739 ZNF131 Zinc finger protein 131 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 50.278 42.42 4 0.00053069 1 30373 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.321 66.207 4387700 370200 0 711510 0 1402900 1903100 3051 960 3017 13320;13321;13322;13323 8823 8823 1 HTGEKPYICGICGK Unmodified 1618.7596 0.75958208 1524 Q9NPC7-3;Q9NPC7-2;Q9NPC7 MYNN Myoneurin yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 82.925 74.122 3 0.031096 1 51453 20150910_Q1_SA_NiHu_Masterprac_group13_B 41.227 26.663 5292600 1059100 682880 821140 915920 1813600 0 3052 1524 3018 13324;13325;13326;13327;13328 8824 8824 1 HTGEKPYVCDTCGK Unmodified 1650.713 0.71302582 1524 Q9NPC7-3;Q9NPC7-2;Q9NPC7 MYNN Myoneurin yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 41.446 35.55 3 0.0059184 1 28994 20150910_Q1_SA_NiHu_Masterprac_group13_C 55.335 49.13 2731000 679980 534380 972650 301280 242730 0 3053 1524 3019 13329;13330;13331;13332;13333 8825 8825 1 HTGPNSPDTANDGFVR Unmodified 1683.7601 0.76011066 322;970 D6RBM0;E9PCY7;P31943;G8JLB6;D6RIU0;D6RAM1;D6R9T0;D6RFM3;D6RIT2;D6RDU3;D6RJ04;D6RIH9;E7EQJ0;E5RGV0;E5RGH4;H0YAQ2;P55795 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H2, N-terminally processed no no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 77.941 71.309 3 1.7764E-18 6 56365 20150910_Q1_SA_NiHu_Masterprac_group13_C 105.17 84.892 26600000 1633600 5818100 2917400 2198200 5538600 8494300 3054 322;970 3020 13334;13335;13336;13337;13338;13339;13340 8826;8827;8828;8829;8830;8831 8828 6 HTGPNSPDTANDGFVRLR Unmodified 1952.9453 0.94528567 322;970 D6RBM0;E9PCY7;P31943;G8JLB6;D6RIU0;D6RAM1;D6R9T0;D6RFM3;D6RIT2;D6RDU3;D6RJ04;D6RIH9;E5RGV0;E5RGH4;H0YAQ2;P55795 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H2, N-terminally processed no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 105.64 95.511 3;4 5.9034E-45 6 63866 20150910_Q1_SA_NiHu_Masterprac_group10_B 114.31 79.459 20762000 1697200 6869100 2016400 0 2790100 7389400 3055 322;970 3021 13341;13342;13343;13344;13345;13346;13347;13348;13349;13350 8832;8833;8834;8835;8836;8837 8835 6 HTGTIPGAQGLMNSSLLHQPKARP Unmodified 2510.3176 0.31760953 439 E9PHP9;O15265 ATXN7 Ataxin-7 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 131.38 131.38 4 0.0029267 1 84355 20150910_Q1_SA_NiHu_Masterprac_group13_B 48.354 38.299 1621100 0 0 0 1621100 0 0 3056 439 3022 13351 8838 8838 1 HTLSYVDVGTGK Unmodified 1275.6459 0.64591575 407 E9PBJ5;P31040;E9PEF8;D6RFM5 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 94.085 85.919 2;3 0.0017862 4 58386 20150910_Q1_SA_NiHu_Masterprac_group13_B 77.644 35.169 24215000 0 3207000 4225200 3493000 5016800 8273300 3057 407 3023 13352;13353;13354;13355;13356;13357;13358;13359;13360 8839;8840;8841;8842 8839 3 HTPADVQLIGTDSQGNKFK Unmodified 2055.0385 0.038517356 916 P42684-7;P42684-5;P42684-6;P42684;P42684-9;P42684-4;P42684-10;P42684-2;D1MPS6;P42684-3 ABL2 Abelson tyrosine-protein kinase 2 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 115.23 104.34 3 2.1189E-10 2 71379 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.401 79.758 7474400 1523400 947050 1553500 0 599470 2851000 3058 916 3024 13361;13362;13363;13364;13365 8843;8844 8844 2 HTQDSARVNPQDGTNTLTR Unmodified 2110.0152 0.015156152 1507 Q9H9B1-3;Q9H9B1;Q9H9B1-4;C9JD67;Q9H9B1-2 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 2 1 70.102 61.534 3;4 5.1964E-06 8 42983 20150910_Q1_SA_NiHu_Masterprac_group15_B 85.362 75.096 16381000 3076400 3148800 4004600 901850 2377500 2871400 3059 1507 3025 13366;13367;13368;13369;13370;13371;13372;13373;13374;13375;13376 8845;8846;8847;8848;8849;8850;8851;8852 8848 8 HTTFEQPVFSVSK Unmodified 1505.7514 0.75144346 891 P33981-2;P33981 TTK Dual specificity protein kinase TTK yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 125.24 117.45 3 0.0010535 2 81701 20150910_Q1_SA_NiHu_Masterprac_group13_C 78.287 55.795 10781000 0 225840 6948100 0 0 3606800 3060 891 3026 13377;13378;13379 8853;8854 8853 2 HTVPCMPPAKQK Unmodified 1392.7006 0.70061064 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 54.394 47.426 3 0.017519 1 33977 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.237 29.918 1447000 0 0 333430 0 0 1113600 3061 1611 3027 13380;13381 8855 8855 1 HVEYEVSSQRFK Unmodified 1507.7419 0.7419414 1657 Q9Y5X2;C9JCB9;C9J8E6;C9J014;C9J271 SNX8 Sorting nexin-8 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 82.653 71.357 3 0.032168 1 49570 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.039 21.804 2870400 0 0 929740 0 404450 1536200 3062 1657 3028 13382;13383;13384 8856 8856 1 HVFIHTGEKPFQCSQCDMR Unmodified 2376.0562 0.056174806 1626 Q9UQR1;F5H173 ZNF148 Zinc finger protein 148 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 2 97.168 95.462 3;4 0.00042164 2 65159 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.498 54.559 4135800 0 0 0 287140 0 3848700 3063 1626 3029 13385;13386;13387 8857;8858 8857 2 HVFSANTMGYK Unmodified 1253.5863 0.58629239 436 Q9Y4E5-2;E9PH99;Q9Y4E5 ZNF451 Zinc finger protein 451 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 92.182 83.132 2 0.013873 1 57009 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.301 43.682 1802900 0 0 0 0 673690 1129200 3064 436 3030 13388;13389 8859 8859 1 HVLCAYCYEK Unmodified 1341.5846 0.58457783 1468 Q9BYC8 MRPL32 39S ribosomal protein L32, mitochondrial yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 85.455 78.075 2 2.9819E-05 5 53772 20150910_Q1_SA_NiHu_Masterprac_group15_B 110.38 96.874 6305400 0 1171900 1427800 1099200 181940 2424600 3065 1468 3031 13390;13391;13392;13393;13394;13395 8860;8861;8862;8863;8864 8863 5 HVLLTIK Unmodified 822.53272 0.5327239 1156 Q16763 UBE2S Ubiquitin-conjugating enzyme E2 S yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 87.433 85.224 2 0.029981 1 57874 20150910_Q1_SA_NiHu_Masterprac_group10_B 106.42 35.037 0 0 0 0 0 0 0 3066 1156 3032 13396 8865 8865 1 HVLVHTGEKPFPCLECGK Unmodified 2107.0343 0.034300376 1419 Q96SL8 FIZ1 Flt3-interacting zinc finger protein 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 115.46 105.06 4 0.0017634 2 71953 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.469 51.048 4233600 0 0 0 0 1353000 2880600 3067 1419 3033 13397;13398 8866;8867 8867 2 HVLVTLGEK Unmodified 994.58113 0.58113065 552 F8W1R7;P60660-2;P60660;G3V1V0;G8JLA2;B7Z6Z4;F8VPF3;G3V1Y7;F8VXL3;H0YI43;F8VZU9;F8W180 MYL6 Myosin light polypeptide 6 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 82.496 80.414 2 0.0064563 2 54906 20150910_Q1_SA_NiHu_Masterprac_group10_B 91.867 69.63 1792000 0 935840 0 0 0 856180 3068 552 3034 13399;13400 8868;8869 8869 2 HVPGGGNVQIQNK Unmodified 1346.7055 0.70549632 388 E7EVA0;P27816-6;P27816;P27816-2;P27816-4;E9PGM5;H0Y2V1;B4DSQ1;F8W9U4 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 1 1 56.962 50.223 3 0.0018601 2 35990 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.385 45.33 3212600 0 799800 453900 0 839820 1119100 3069 388 3035 13401;13402;13403;13404;13405 8870;8871 8870 2 HVPGGGNVQIQNKK Unmodified 1474.8005 0.80045934 388 E7EVA0;P27816-6;P27816;P27816-2;P27816-4;E9PGM5;H0Y2V1;B4DSQ1;F8W9U4 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 45.18 39.925 3 0.00035686 7 28316 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.772 73.186 7739300 0 1798300 2180800 612230 1246200 1901700 3070 388 3036 13406;13407;13408;13409;13410 8872;8873;8874;8875;8876;8877;8878 8874 7 HVPLSGSQIVKGK Unmodified 1348.7827 0.78268401 706 O15446;O15446-2 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 70.768 65.173 3 2.7694E-05 3 51169 20150910_Q1_SA_NiHu_Masterprac_group15_C 96.82 79.798 4486600 691700 713280 0 700040 1289700 1091800 3071 706 3037 13411;13412;13413;13414;13415 8879;8880;8881 8880 3 HVQGWPADHAEK Unmodified 1373.6476 0.64764709 1446 Q9BTA9-2;Q9BTA9;Q9BTA9-5 WAC WW domain-containing adapter protein with coiled-coil yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 55.745 48.225 3 0.00335 1 34494 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.326 66.326 3045300 0 720380 582640 0 332180 1410100 3072 1446 3038 13416;13417;13418;13419 8882 8882 1 HVSNAPLTKLPIK Unmodified 1416.8453 0.84528426 539 Q8TAQ2-2;F8VTJ5;Q8TAQ2;F8VXC8;F8VZW6 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 108.57 98.622 3 3.8203E-05 3 65368 20150910_Q1_SA_NiHu_Masterprac_group10_B 95.183 71.46 4896100 0 1459600 1134500 0 520240 1781800 3073 539 3039 13420;13421;13422;13423 8883;8884;8885 8885 3 HVTNPAFTKLPAK Unmodified 1422.7983 0.79833407 1365 Q92922;F8WE13 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 89.623 81.961 3 0.012932 4 56106 20150910_Q1_SA_NiHu_Masterprac_group13_B 53.038 32.723 10735000 1638100 2040100 1216800 961660 865200 4013600 3074 1365 3040 13424;13425;13426;13427;13428;13429 8886;8887;8888;8889 8886 4 HVVFGFVK Unmodified 931.52797 0.52797287 945 P49792;E9PGT0 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 120.31 115.65 2 0.00708 1 78840 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.407 94.407 1154800 0 0 0 0 0 1154800 3075 945 3041 13430 8890 8890 1 HWELTAEGEEIAR Unmodified 1539.7318 0.73177065 165 B4E363;Q9Y285 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 128.23 127.62 3 1.8775E-15 1 81464 20150910_Q1_SA_NiHu_Masterprac_group10_B 109 81.899 1067400 0 1067400 0 0 0 0 3076 165 3042 13431 8891 8891 1 HWNHPDSEELPGPPVVKPQSVTVR Unmodified 2704.3721 0.37214752 1253 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 WAPAL Wings apart-like protein homolog yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.85 125.88 4 5.6188E-09 1 85618 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.732 40.745 4972200 0 0 0 0 0 4972200 3077 1253 3043 13432 8892 8892 1 HWPFMVVNDAGRPK Unmodified 1652.8246 0.8245656 824 P11142;E9PKE3;P11142-2;E9PNE6;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 132.72 114.8 3 6.5026E-20 2 83755 20150910_Q1_SA_NiHu_Masterprac_group13_C 108.32 89.336 18115000 0 0 14696000 0 3418500 0 3078 824 3044 13433;13434 8893;8894 8893 2 HWPFMVVNDAGRPK Oxidation (M) 1668.8195 0.81948022 824 P11142;E9PKE3;P11142-2;E9PNE6;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 HSPA8 Heat shock cognate 71 kDa protein yes no 0 1 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 125.25 123.39 3 0.025596 1 83433 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.483 17.761 2104500 0 412250 0 432270 0 1260000 3079 824 3044 13435;13436;13437 8895 8895 81 0 HYEVEILDAKTR Unmodified 1472.7623 0.7623425 1565 Q9NZ01;Q9NZ01-2 TECR Very-long-chain enoyl-CoA reductase yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 109.5 99.552 3 4.1719E-10 4 67851 20150910_Q1_SA_NiHu_Masterprac_group15_B 107.09 91.701 4479900 0 657360 768900 0 1415700 1637900 3080 1565 3045 13438;13439;13440;13441 8896;8897;8898;8899 8896 4 HYEVEILDAKTREK Unmodified 1729.8999 0.89989861 1565 Q9NZ01;Q9NZ01-2 TECR Very-long-chain enoyl-CoA reductase yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 98.631 87.779 4 0.0016143 3 59787 20150910_Q1_SA_NiHu_Masterprac_group13_B 67.118 51.827 3610200 1107500 0 1155300 1001500 345870 0 3081 1565 3046 13442;13443;13444;13445 8900;8901;8902 8900 3 HYGQFTCEGCK Unmodified 1385.5493 0.54925495 871;819 P24468;P10589 NR2F2;NR2F1 COUP transcription factor 2;COUP transcription factor 1 no no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 61.16 53.38 2;3 0.0039553 4 38351 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.416 75.416 16076000 1657500 4145100 5271200 2013700 2988000 0 3082 871;819 3047 13446;13447;13448;13449;13450;13451;13452;13453;13454;13455 8903;8904;8905;8906 8906 4 HYGVFTCEGCK Unmodified 1356.5591 0.55909136 116 B4DQE4;P10588 NR2F6 Nuclear receptor subfamily 2 group F member 6 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 2 75.484 73.677 2;3 0.00064815 3 51081 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.309 86.275 3495600 0 730270 0 0 0 2765400 3083 116 3048 13456;13457;13458 8907;8908;8909 8907 3 HYGVYSCEGCK Unmodified 1358.5384 0.53835592 533 F8VZR5;F8VNP5;P28702;Q5STQ1;E9PK95;B7Z3E4;B3KY83;P19793;P48443 RXRB;RXRA;RXRG Retinoic acid receptor RXR-beta;Retinoic acid receptor RXR-alpha;Retinoic acid receptor RXR-gamma yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 1 2 2 56.201 49.408 2;3 5.9785E-20 7 35409 20150910_Q1_SA_NiHu_Masterprac_group15_B 119.22 111.09 8619100 757660 1268300 1400500 401780 1414600 3376200 3084 533 3049 13459;13460;13461;13462;13463;13464;13465;13466;13467;13468 8910;8911;8912;8913;8914;8915;8916 8913 7 HYGVYSCEGCKGFFK Unmodified 1837.7916 0.79161049 533 F8VZR5;F8VNP5;P28702;Q5STQ1;E9PK95;B7Z3E4;B3KY83;P19793;P48443 RXRB;RXRA;RXRG Retinoic acid receptor RXR-beta;Retinoic acid receptor RXR-alpha;Retinoic acid receptor RXR-gamma yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1 114.33 104.54 3 7.0635E-56 7 69548 20150910_Q1_SA_NiHu_Masterprac_group10_C 127.78 120.96 61411000 8414500 4084500 16327000 7629800 13134000 11822000 3085 533 3050 13469;13470;13471;13472;13473;13474;13475 8917;8918;8919;8920;8921;8922;8923 8923 7 HYNEEGSQVYNDAHILEK Unmodified 2144.9763 0.97631103 1260 Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-3;Q86U86-9;Q86U86-2;Q86U86-8;Q86U86;E7EVG2;H0Y5B5;Q86U86-6 PBRM1 Protein polybromo-1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 118.17 107.11 3 0.00064159 3 70417 20150910_Q1_SA_NiHu_Masterprac_group10_B 73.735 57.423 11449000 1877000 1420500 2136100 0 1752500 4263300 3086 1260 3051 13476;13477;13478;13479;13480 8924;8925;8926 8925 3 HYPVFENPK Unmodified 1129.5556 0.55564418 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 87.422 79.777 2 0.0090399 2 55131 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.013 89.358 39509000 2761600 5512000 3057000 2623300 9801100 15754000 3087 352;968 3052 13481;13482;13483;13484;13485;13486 8927;8928 8928 2 HYSSSRSGGGGGGGGCGGGGGVSSLR Unmodified 2265.9894 0.98935211 298 P13645;CON__P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 48.483 44.061 4 0.0015442 2 31038 20150910_Q1_SA_NiHu_Masterprac_group13_B 49.765 41.02 5645300 1267200 650450 1803300 1104300 0 820090 + 3088 298 3053 13487;13488;13489;13490;13491 8929;8930 8930 2 HYSSSRSGGGGGGGGCGGGGGVSSLRISSSK Unmodified 2768.2645 0.26446434 298 P13645;CON__P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 70.84 62.845 5 0.035268 1 43852 20150910_Q1_SA_NiHu_Masterprac_group13_B 32.775 24.565 3094900 0 0 1652800 1442100 0 0 + 3089 298 3054 13492;13493 8931 8931 1 HYYEVSCHDQGLCR Unmodified 1822.7515 0.75153659 1348 Q92499;B4DME8;B4DPN6 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 79.972 72.443 3 0.0064295 1 50275 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.821 49.683 8019400 718300 975080 1214400 618310 1281600 3211700 3090 1348 3055 13494;13495;13496;13497;13498;13499 8932 8932 1 IAAEIAQAEEQAR Unmodified 1398.7103 0.71030693 85 C0IMW5;B4DFR4;Q969G3-2;B4DGM3;Q969G3;H7C048;H7BXG8;H7C3F6 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 110.26 100.28 2 0.0051068 4 68312 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.167 42.59 6957100 0 1552800 800270 0 1426700 3177300 3091 85 3056 13500;13501;13502;13503 8933;8934;8935;8936 8934 4 IAAKTKDHTLVQTIAR Unmodified 1765.021 0.021016799 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 2 77.796 70.442 3;4 4.1861E-26 8 49297 20150910_Q1_SA_NiHu_Masterprac_group13_B 108.06 96.333 44497000 7418700 7987700 8128800 2262400 9375100 9323800 3092 1111 3057 13504;13505;13506;13507;13508;13509;13510;13511;13512;13513 8937;8938;8939;8940;8941;8942;8943;8944 8937 8 IACHEEPVMDLDFDSQK Unmodified 2032.887 0.88702702 1467 Q9BYB4 GNB1L Guanine nucleotide-binding protein subunit beta-like protein 1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 132.85 115 3 0.0032112 1 81881 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.535 36.737 3768400 0 0 0 0 3768400 0 3093 1467 3058 13514 8945 8945 1 IACHEEPVMDLDFDSQKAR Unmodified 2260.0253 0.025251833 1467 Q9BYB4 GNB1L Guanine nucleotide-binding protein subunit beta-like protein 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 131.28 123.51 3;4 2.222E-26 3 80663 20150910_Q1_SA_NiHu_Masterprac_group15_C 103.87 82.865 39148000 0 16574000 0 0 1454700 21119000 3094 1467 3059 13515;13516;13517 8946;8947;8948 8947 2 IACKSPPPESMDTPTSTR Unmodified 1973.9187 0.9186615 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 79.978 72.598 3 4.9114E-06 5 51405 20150910_Q1_SA_NiHu_Masterprac_group10_C 88.781 67.528 13415000 0 2510500 2300400 356640 1724700 6523200 3095 919;920 3060 13518;13519;13520;13521;13522;13523 8949;8950;8951;8952;8953 8953 5 IACKSPPPESVDTPTSTK Unmodified 1913.9404 0.9404428 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 74.731 67.287 3 0 10 48563 20150910_Q1_SA_NiHu_Masterprac_group10_C 233.84 207.42 116850000 18855000 25431000 17035000 11424000 22348000 21755000 3096 919;920 3061 13524;13525;13526;13527;13528;13529 8954;8955;8956;8957;8958;8959;8960;8961;8962;8963 8963 10 IACKSPPPESVDTPTSTKQWPK Unmodified 2453.2261 0.22606013 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 104.76 95.113 4 0.00023952 4 70481 20150910_Q1_SA_NiHu_Masterprac_group13_C 57.41 46.511 6787800 3166400 0 2558900 1062600 0 0 3097 919;920 3062 13530;13531;13532 8964;8965;8966;8967 8965 4 IACKSPQPDPVDTPASTK Unmodified 1910.9408 0.94077715 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 78.934 71.575 3 1.3418E-32 3 49444 20150910_Q1_SA_NiHu_Masterprac_group15_B 111.22 111.22 30932000 0 5131300 3391200 2219900 5011600 15178000 3098 919;920 3063 13533;13534;13535;13536;13537 8968;8969;8970 8970 3 IACRSPQPDPVGTPTIFKPQSK Unmodified 2423.2631 0.26311434 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 2 127.23 117.11 3;4 2.001E-46 14 76354 20150910_Q1_SA_NiHu_Masterprac_group10_C 111.57 91.659 707320000 258090000 48386000 164450000 45681000 144740000 45972000 3099 919;920 3064 13538;13539;13540;13541;13542;13543;13544;13545;13546;13547;13548;13549;13550 8971;8972;8973;8974;8975;8976;8977;8978;8979;8980;8981;8982;8983;8984 8983 13 IACRSQPDPVDTPTSSKPQSK Unmodified 2298.1274 0.12740872 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 4 1 4 3 2 2 65.043 57.147 3;4 1.6825E-09 12 46680 20150910_Q1_SA_NiHu_Masterprac_group13_C 86.258 61.533 159970000 43636000 5480900 52931000 26643000 16975000 14303000 3100 919;920 3065 13551;13552;13553;13554;13555;13556;13557;13558;13559;13560;13561;13562;13563;13564;13565;13566 8985;8986;8987;8988;8989;8990;8991;8992;8993;8994;8995;8996 8988 12 IADAIENKTTVYK Unmodified 1464.7824 0.78240924 1549 Q9NVN8 GNL3L Guanine nucleotide-binding protein-like 3-like protein yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 91.135 83.37 3 7.1475E-16 3 56756 20150910_Q1_SA_NiHu_Masterprac_group10_B 111.79 73.615 9599600 1209700 1668600 2540500 750420 1267900 2162300 3101 1549 3066 13567;13568;13569;13570;13571;13572 8997;8998;8999 8999 3 IADFGWSVHAPSSR Unmodified 1528.7423 0.74227576 698 O14965;A3KFJ0 AURKA Aurora kinase A yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 132.73 127.76 3 6.9711E-05 2 87753 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.412 58.737 18284000 0 0 0 0 0 18284000 3102 698 3067 13573;13574 9000;9001 9001 2 IADFGWSVHAPSSRR Unmodified 1684.8434 0.84338678 698 O14965;A3KFJ0 AURKA Aurora kinase A yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 2 128.76 123.8 3;4 0.0029782 2 83671 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.071 24.39 8366400 0 0 0 0 0 8366400 3103 698 3068 13575;13576 9002;9003 9003 2 IAEEEAKAKEEEGVPDEEGWVK Unmodified 2471.1704 0.17037897 1643 Q9Y3A4;Q9NSQ0 RRP7A;RRP7B Ribosomal RNA-processing protein 7 homolog A;Putative ribosomal RNA-processing protein 7 homolog B yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 120.15 108.44 4 0.018771 1 76605 20150910_Q1_SA_NiHu_Masterprac_group15_C 34.843 21.407 5827400 0 0 2627100 1813800 1386600 0 3104 1643 3069 13577;13578;13579 9004 9004 1 IAEFTTNLTEEEEK Unmodified 1652.7781 0.77811172 900 P35579 MYH9 Myosin-9 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 130.19 129.59 2 0.0045757 1 82997 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.414 25.739 1919500 0 1919500 0 0 0 0 3105 900 3070 13580 9005 9005 1 IAEIFMR Unmodified 878.46841 0.46840908 1172 Q4VXZ8;Q9NUI1;G8JLH8;G3V0I9;Q9NUI1-2 DECR2 Peroxisomal 2,4-dienoyl-CoA reductase yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 132.91 117.22 2 0.010406 1 78651 20150910_Q1_SA_NiHu_Masterprac_group10_C 110.61 67.488 3584600 3584600 0 0 0 0 0 3106 1172 3071 13581 9006 9006 1 IAELDTEAK Unmodified 988.50769 0.50769094 1335 Q8TD26 CHD6 Chromodomain-helicase-DNA-binding protein 6 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 66.4 64.318 2 0.028575 1 44893 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.157 6.9273 1396300 0 409260 0 0 0 987040 3107 1335 3072 13582;13583 9007 9007 1 IAELLCKNDVTDGRAK Unmodified 1801.9356 0.93563219 945;1251 P49792;E9PGT0;P0DJD0;P0DJD1;F8VYC4;Q99666;O14715;Q99666-2;F8W705;C9J1W9;C9JF75;C9J6W1;Q7Z3J3-2;Q7Z3J3 RANBP2;RGPD1;RGPD2;RGPD5;RGPD8;RGPD6;RGPD4 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8;RanBP2-like and GRIP domain-containing protein 4 no no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 99.956 92.236 3 0.0060469 3 69101 20150910_Q1_SA_NiHu_Masterprac_group13_C 59.68 36.825 4644100 0 697190 1300600 873260 483750 1289300 3108 945;1251 3073 13584;13585;13586;13587;13588 9008;9009;9010 9008 3 IAENGVSERDSEAAK Unmodified 1574.7536 0.7536283 1507 Q9H9B1-3;Q9H9B1;Q9H9B1-4;C9JD67;Q9H9B1-2 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 47.748 42.253 3 0.0026932 2 30172 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.181 32.307 7530500 0 1781400 1103700 435900 1025500 3184000 3109 1507 3074 13589;13590;13591;13592;13593 9011;9012 9012 2 IAEQVASFQEEK Unmodified 1377.6776 0.67760981 161 G3XAM7;B4E2G8;P35221;F6XBD8;P35221-2;Q8N1C0;F8W845 CTNNA1 Catenin alpha-1 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 105.09 95.01 2 6.5082E-27 3 64779 20150910_Q1_SA_NiHu_Masterprac_group15_B 123.26 99.03 10745000 1267400 3119400 2059600 0 290820 4007400 3110 161 3075 13594;13595;13596;13597;13598 9013;9014;9015 9013 3 IAETDFEK Unmodified 951.45493 0.45492709 1430 Q99615;Q7Z784 DNAJC7 DnaJ homolog subfamily C member 7 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 80.4 72.13 2 0.026998 1 50930 20150910_Q1_SA_NiHu_Masterprac_group10_C 73.665 45.456 1059700 1059700 0 0 0 0 0 3111 1430 3076 13599 9016 9016 1 IAGEASRLAHYNK Unmodified 1428.7474 0.74736113 119 Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;O60814;Q5QNW6-2;B4DR52 HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;HIST1H2BK Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B no no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 68.839 63.174 3 0.011696 2 44260 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.023 36.437 7448400 1186600 1850000 2247400 1253600 0 910720 3112 119 3077 13600;13601;13602;13603;13604 9017;9018 9017 2 IAGLYNDSEPPRK Unmodified 1458.7467 0.74669243 1383 Q96ES7 CCDC101 SAGA-associated factor 29 homolog yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 86.917 78.228 3 0.0013032 1 53959 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.945 49.443 1417100 421560 0 0 0 531910 463650 3113 1383 3078 13605;13606;13607 9019 9019 1 IAGRAVLIAGQPGTGK Unmodified 1507.8835 0.88346068 1627 Q9Y230;B3KQ59 RUVBL2 RuvB-like 2 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 100.34 91.069 3 0.00044348 2 61555 20150910_Q1_SA_NiHu_Masterprac_group10_C 69.878 63.471 18405000 4472500 0 3005100 2126400 4049800 4751200 3114 1627 3079 13608;13609;13610;13611;13612 9020;9021 9021 1 IAHIMGPPDRCEHAAR Unmodified 1829.8777 0.87774015 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 2 70.972 63.051 3;4 0.0034344 6 43881 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.377 35.056 147990000 0 23194000 21910000 17268000 75433000 10182000 3115 1366 3080 13613;13614;13615;13616;13617;13618;13619;13620;13621;13622;13623 9022;9023;9024;9025;9026;9027 9024 6 IAHIMGPPDRCEHAAR Oxidation (M) 1845.8727 0.87265478 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 1 1 By MS/MS By matching By matching By matching By MS/MS By matching 2 1 1 1 1 59.997 52.193 4 0.0053909 2 42602 20150910_Q1_SA_NiHu_Masterprac_group15_C 82.202 72.644 26761000 9530400 247170 857820 0 15316000 809450 3116 1366 3080 13624;13625;13626;13627;13628;13629 9028;9029 9028 157 2 IALEDVPEKQK Unmodified 1268.6976 0.69761697 709 O43148;O43148-2 RNMT mRNA cap guanine-N7 methyltransferase yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 3 4 2 2 2 89.164 80.567 2;3 0.0039795 10 55989 20150910_Q1_SA_NiHu_Masterprac_group10_C 91.313 63.632 78067000 13974000 9559900 10920000 6452100 10501000 26660000 3117 709 3081 13630;13631;13632;13633;13634;13635;13636;13637;13638;13639;13640;13641;13642;13643;13644;13645;13646;13647 9030;9031;9032;9033;9034;9035;9036;9037;9038;9039 9039 10 IAMENDDGRTEEEK Unmodified 1635.7046 0.7046292 36 Q8WWM7-6;Q8WWM7-5;Q8WWM7-4;A8K1R6;Q8WWM7-2;Q63ZY4;H3BUF6;Q8WWM7;Q8WWM7-3;H3BSK9;Q8WWM7-7;C9JXV8 ATXN2L Ataxin-2-like protein yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 53.406 47.281 3 4.1763E-31 4 33725 20150910_Q1_SA_NiHu_Masterprac_group15_B 118.87 99.589 5446900 694310 608730 956680 912760 1022400 1252000 3118 36 3082 13648;13649;13650;13651;13652;13653 9040;9041;9042;9043 9041 4 IANPVEGSSGR Unmodified 1085.5465 0.54653606 1135 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 1 1 65.064 57.902 2 0.0039439 6 40336 20150910_Q1_SA_NiHu_Masterprac_group10_C 79.659 41.092 55153000 4345400 9237700 5539300 1503900 11204000 23323000 3119 1135 3083 13654;13655;13656;13657;13658;13659;13660 9044;9045;9046;9047;9048;9049 9048 6 IANPVEGSTDR Unmodified 1157.5677 0.56766543 548 F8VZX2;Q15366-4;Q15366-5;Q15366-3;Q15366;Q15366-2;H3BRU6;G3V0E8;B4DXP5;B4DRD7;F8VRG9;F8VWQ4;F8VRH0;H3BSS4 PCBP2 Poly(rC)-binding protein 2 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 74.221 65.536 2 0.023367 2 51080 20150910_Q1_SA_NiHu_Masterprac_group15_C 53.567 6.771 3857200 0 1277100 791560 454530 1334000 0 3120 548 3084 13661;13662;13663;13664 9050;9051 9050 2 IANVVINQSANDSK Unmodified 1471.7631 0.76307078 700 O14981 BTAF1 TATA-binding protein-associated factor 172 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 91.839 83.026 2 0.011347 1 56923 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.988 39.758 4368800 388600 0 896920 790970 962970 1329300 3121 700 3085 13665;13666;13667;13668;13669 9052 9052 1 IAPQYYDMSNFPQCEAK Unmodified 2060.8972 0.89719777 524 F5H6K0;O43143 DHX15 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 132.87 130.09 2 0.0019136 2 85555 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.548 61.565 19266000 0 13743000 0 0 0 5522900 3122 524 3086 13670;13671 9053;9054 9054 2 IAPYSVEIK Unmodified 1018.5699 0.56989727 1012 P78527;E7EUY0;P78527-2;F5GX40 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 118.82 110.64 2 0.0066274 3 75489 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.087 53.538 51248000 0 6746200 6234000 3082800 1288900 33896000 3123 1012 3087 13672;13673;13674;13675;13676 9055;9056;9057 9056 3 IAPYSVEIKNTCTSVYTK Unmodified 2073.0452 0.045242218 1012 P78527;E7EUY0;P78527-2;F5GX40 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 128.98 128.68 3 0.0086468 1 82052 20150910_Q1_SA_NiHu_Masterprac_group13_B 43.37 30.036 19251000 0 16560000 0 2691200 0 0 3124 1012 3088 13677;13678 9058 9058 1 IAQDKLNDIKEK Unmodified 1413.7827 0.78274359 1362 Q92878-2;Q92878;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 62.694 56.016 3 0.0037158 5 39253 20150910_Q1_SA_NiHu_Masterprac_group13_B 91.961 52.231 11061000 0 2261400 1673900 1304000 2841500 2980200 3125 1362 3089 13679;13680;13681;13682;13683 9059;9060;9061;9062;9063 9060 4 IAQLASITGPQSR Unmodified 1340.7412 0.74121312 1405 Q96L91-4;Q96L91-3;Q96L91-5;Q96L91-2;Q96L91;A7E2D7 EP400 E1A-binding protein p400 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 119.88 111.76 2 0.0019495 1 76436 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.815 45.049 7928900 0 1291100 4063000 0 0 2574800 3126 1405 3090 13684;13685;13686 9064 9064 1 IASNAGSIA Unmodified 802.41848 0.418482 995 P62829 RPL23 60S ribosomal protein L23 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 66.323 61.385 1 0.0056169 2 43624 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.252 41.066 4075800 0 842220 1175500 554600 0 1503500 3127 995 3091 13687;13688;13689;13690 9065;9066 9066 2 IASSVTAGVASSLSEK Unmodified 1505.7937 0.7937022 585 Q8NHV4-2;Q8NHV4;G3V3F1 NEDD1 Protein NEDD1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 120.94 120.43 2 0.014706 1 77435 20150910_Q1_SA_NiHu_Masterprac_group10_B 42.708 21.974 886450 0 886450 0 0 0 0 3128 585 3092 13691 9067 9067 1 IATCSDDNTLK Unmodified 1236.5656 0.56561652 499 F5GZ90;Q9NZJ0 DTL Denticleless protein homolog yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 57.304 50.861 2 0.0038421 4 36355 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.245 16.925 7561100 754820 1406100 2541200 526910 97343 2234800 3129 499 3093 13692;13693;13694;13695;13696;13697 9068;9069;9070;9071 9070 4 IATGHGQQGVTQVVLK Unmodified 1634.9104 0.91040372 18 A6NEM2;P51610-2;P51610 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 1 3 98.677 91.52 2;3 2.3278E-11 8 67043 20150910_Q1_SA_NiHu_Masterprac_group15_C 95.751 77.082 93241000 8552700 15412000 10914000 6179400 10683000 41500000 3130 18 3094 13698;13699;13700;13701;13702;13703;13704;13705;13706;13707;13708;13709;13710 9072;9073;9074;9075;9076;9077;9078;9079 9076 8 IATGHGQQGVTQVVLKGAPGQPGTILR Unmodified 2682.4929 0.49293135 18 A6NEM2;P51610-2;P51610 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 132.38 116.7 4 7.8692E-06 1 78034 20150910_Q1_SA_NiHu_Masterprac_group10_C 58.924 45.478 9031800 9031800 0 0 0 0 0 3131 18 3095 13711 9080 9080 0 IATTTASAATAAAIGATPR Unmodified 1714.9214 0.92136233 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;Q9BTE9 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 2 2 130.81 120.21 2;3 1.9635E-296 8 85517 20150910_Q1_SA_NiHu_Masterprac_group15_B 178.52 136.9 234640000 76965000 18962000 27086000 4663900 10622000 96341000 3132 1121 3096 13712;13713;13714;13715;13716;13717;13718;13719;13720 9081;9082;9083;9084;9085;9086;9087;9088 9082 8 IATTTASAATAAAIGATPRAK Unmodified 1914.0534 0.053439139 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;Q9BTE9 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 121.99 112.52 3 8.7416E-74 5 80173 20150910_Q1_SA_NiHu_Masterprac_group13_C 119.5 99.406 26315000 7214100 1860300 10939000 3897100 514980 1888900 3133 1121 3097 13721;13722;13723;13724;13725;13726 9089;9090;9091;9092;9093 9089 5 IATTTASAATAAAIGATPRAKGK Unmodified 2099.1699 0.16986588 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;Q9BTE9 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 108.79 101.27 4 0.01166 2 66830 20150910_Q1_SA_NiHu_Masterprac_group10_B 36.312 14.636 5596000 0 1449900 2663700 0 0 1482300 3134 1121 3098 13727;13728;13729 9094;9095 9095 2 IAVAVLEETTR Unmodified 1200.6714 0.67140222 945;1251 P49792;E9PGT0;P0DJD0;P0DJD1;F8VYC4;E7ES93;B4DTM4;Q7Z3J3 RANBP2;RGPD1;RGPD2;RGPD4 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 4 no no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.56 130.96 2 0.0046624 1 84396 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.819 57.01 24357000 0 24357000 0 0 0 0 3135 945;1251 3099 13730 9096 9096 1 IAVAVLEETTRER Unmodified 1485.8151 0.81510635 945;1251 P49792;E9PGT0;P0DJD0;P0DJD1;F8VYC4;E7ES93;B4DTM4;Q7Z3J3 RANBP2;RGPD1;RGPD2;RGPD4 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 4 no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 129.64 124.68 3 0.015116 1 84502 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.727 28.584 3627200 0 0 0 0 0 3627200 3136 945;1251 3100 13731 9097 9097 1 IAVEAQNKYER Unmodified 1319.6834 0.68336389 827 P12270 TPR Nucleoprotein TPR yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 62.837 57.999 3 0.00031805 4 40986 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.04 76.26 3315800 0 900020 791570 474360 0 1149800 3137 827 3101 13732;13733;13734;13735 9098;9099;9100;9101 9100 4 IAVEPVNPSELPK Unmodified 1391.766 0.76603089 92 B4DK30;Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 132.58 124.78 2 0.0022319 4 85205 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.352 69.352 27034000 0 8466600 0 0 4682300 13885000 3138 92 3102 13736;13737;13738 9102;9103;9104;9105 9105 3 IAVHCTVRGAK Unmodified 1210.6605 0.66046038 998 P62913;P62913-2;Q5VVC9;Q5VVC8 RPL11 60S ribosomal protein L11 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 39.926 36.517 3 0.015426 1 25471 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.067 37.695 3466000 0 893650 2026000 403370 0 142910 3139 998 3103 13739;13740;13741;13742 9106 9106 1 IAVSNLHKETK Unmodified 1238.6983 0.69828568 870 P23921 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 48.308 41.589 3 0.0034215 3 29896 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.045 45.718 3325100 0 1121100 1053200 0 295000 855890 3140 870 3104 13743;13744;13745;13746 9107;9108;9109 9108 3 ICAFLLR Unmodified 891.50004 0.50004356 423 Q8N556;E9PDT7;Q8TED9-3;Q8TED9-2;Q8TED9 AFAP1;AFAP1L1 Actin filament-associated protein 1;Actin filament-associated protein 1-like 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 133.52 115.68 2 0.006649 1 82608 20150910_Q1_SA_NiHu_Masterprac_group15_C 96.048 39.538 57202000 0 0 0 0 57202000 0 3141 423 3105 13747 9110 9110 1 ICANDAIPK Unmodified 1000.5012 0.50116577 615 Q96EY4;H0Y9X1 TMA16 Translation machinery-associated protein 16 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 87.654 76.964 2 0.012161 2 59834 20150910_Q1_SA_NiHu_Masterprac_group13_C 81.95 9.1612 102930000 10006000 0 26102000 0 25545000 41274000 3142 615 3106 13748;13749;13750;13751 9111;9112 9111 2 ICANHYISPDMK Unmodified 1447.6588 0.6588054 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 3 2 101.13 90.901 2;3 8.8126E-27 7 61420 20150910_Q1_SA_NiHu_Masterprac_group13_B 122.18 86.655 61116000 13740000 0 4517500 8388800 17099000 17371000 3143 945 3107 13752;13753;13754;13755;13756;13757;13758;13759;13760 9113;9114;9115;9116;9117;9118;9119 9114 7 ICDECNYGSYQGR Unmodified 1620.6297 0.62969012 1246 Q7RTV0 PHF5A PHD finger-like domain-containing protein 5A yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 1 1 1 80.744 73.225 2 0.001679 5 51556 20150910_Q1_SA_NiHu_Masterprac_group10_C 80.905 71.126 8327400 2711600 1519700 660340 0 0 3435700 3144 1246 3108 13761;13762;13763;13764;13765 9120;9121;9122;9123;9124 9123 5 ICEILQAEK Unmodified 1102.5692 0.56924534 936 P49454 CENPF Centromere protein F yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 104.4 94.441 2 0.0087373 1 63431 20150910_Q1_SA_NiHu_Masterprac_group10_B 86.898 38.104 7295600 424690 1625100 1110400 0 920030 3215300 3145 936 3109 13766;13767;13768;13769;13770 9125 9125 1 ICIVGPNGVGK Unmodified 1112.6012 0.60121417 1321 Q8NE71;Q8NE71-2;H0YGW7 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 113.54 106.01 2 0.017051 2 70030 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.785 46.054 11616000 1827200 2475800 952280 1028700 0 5331500 3146 1321 3110 13771;13772;13773;13774;13775 9126;9127 9127 2 ICLEREHPEQHVSTVNSK Unmodified 2162.0538 0.053849845 1250 Q7Z333-3;Q7Z333;Q7Z333-4 SETX Probable helicase senataxin yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 75.001 67.556 4 0.016062 1 47232 20150910_Q1_SA_NiHu_Masterprac_group10_B 40.014 28.047 8788900 817650 1713700 2359200 688030 1319900 1890400 3147 1250 3111 13776;13777;13778;13779;13780;13781 9128 9128 1 ICLIHGPPGTGK Unmodified 1248.6649 0.66487706 1250 Q7Z333-3;Q7Z333;Q7Z333-4 SETX Probable helicase senataxin yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 99.808 96.849 3 0.00017549 1 66088 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.507 59.44 0 0 0 0 0 0 0 3148 1250 3112 13782 9129 9129 1 ICMAQIAYSGNTSNLSYHLEK Unmodified 2399.125 0.12496588 778 O96006;C9JXP4 ZBED1 Zinc finger BED domain-containing protein 1 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 133.11 132.81 3 0.0027993 2 86236 20150910_Q1_SA_NiHu_Masterprac_group13_B 47.088 31.104 9472700 0 6478000 0 2994700 0 0 3149 778 3113 13783;13784 9130;9131 9130 2 ICMNEDPAKRPK Unmodified 1457.7119 0.7119036 181 B7Z1I0;B7Z418;Q13418 ILK Integrin-linked protein kinase yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 55.006 50.555 3 0.0056934 1 36171 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.494 53.423 2296200 0 126730 0 688480 769550 711480 3150 181 3114 13785;13786;13787;13788 9132 9132 1 ICNYEGPAK Unmodified 1050.4804 0.48043033 1021 Q00653-3;Q00653-4;Q00653 NFKB2 Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 51.216 48.558 2 0.028426 3 34724 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.224 23.776 5758100 1285800 1696700 0 616720 0 2158900 3151 1021 3115 13789;13790;13791;13792 9133;9134;9135 9133 3 ICNYVGPAK Unmodified 1020.5063 0.50625115 329 D6RH30;P19838;P19838-2;D6RC45 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 71.347 60.82 2 0.016902 1 48905 20150910_Q1_SA_NiHu_Masterprac_group13_C 72.23 22.103 6511700 708700 1826400 2656900 0 1319700 0 3152 329 3116 13793;13794;13795;13796 9136 9136 1 ICPGEESYGCDDCGK Unmodified 1745.6331 0.63312052 714 O43309 ZSCAN12 Zinc finger and SCAN domain-containing protein 12 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 67.497 66.342 2 0.021618 1 46240 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.838 41.838 497330 0 0 0 0 0 497330 3153 714 3117 13797 9137 9137 1 ICRDPQTPVLQTK Unmodified 1554.8188 0.81881152 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 2 2 86.246 77.954 2;3 0.0018134 9 60469 20150910_Q1_SA_NiHu_Masterprac_group13_C 85.837 62.126 229210000 23984000 32946000 45477000 14996000 31862000 79946000 3154 1611 3118 13798;13799;13800;13801;13802;13803;13804;13805;13806;13807;13808;13809 9138;9139;9140;9141;9142;9143;9144;9145;9146 9139 9 ICRDPQTPVLQTKHR Unmodified 1847.9788 0.97883441 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 2 1 65.49 57.903 3;4 0.0022307 5 40843 20150910_Q1_SA_NiHu_Masterprac_group13_B 75.316 40.991 34805000 12492000 4633100 7434300 592020 5739800 3913800 3155 1611 3119 13810;13811;13812;13813;13814;13815;13816;13817;13818 9147;9148;9149;9150;9151 9147 5 ICTGQVPSAEDEPAPK Unmodified 1697.7931 0.79305028 1447 Q9BTC0;Q9BTC0-1 DIDO1 Death-inducer obliterator 1 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 95.82 87.858 2 0.0043049 5 60031 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.495 34.609 61072000 10811000 10587000 12504000 5941000 10035000 11193000 3156 1447 3120 13819;13820;13821;13822;13823;13824 9152;9153;9154;9155;9156 9154 5 ICTGQVPSAEDEPAPKKQK Unmodified 2082.0416 0.041553824 1447 Q9BTC0;Q9BTC0-1 DIDO1 Death-inducer obliterator 1 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 3 2 2 2 3 2 72.889 64.893 3;4 0.00050267 8 52383 20150910_Q1_SA_NiHu_Masterprac_group13_C 78.228 67.46 34601000 5753900 4528000 6550900 2986700 7565400 7216100 3157 1447 3121 13825;13826;13827;13828;13829;13830;13831;13832;13833;13834;13835;13836;13837;13838 9157;9158;9159;9160;9161;9162;9163;9164 9157 8 ICTLGLQR Unmodified 959.52224 0.52223557 1352 Q92570;Q92570-3 NR4A3 Nuclear receptor subfamily 4 group A member 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 102.55 92.846 2 0.012699 1 63554 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.37 40.928 8084800 0 0 0 0 4308700 3776100 3158 1352 3122 13839;13840 9165 9165 1 ICVNGDDAHPLWK Unmodified 1523.7191 0.71909747 902 P36969-2;P36969 GPX4 Phospholipid hydroperoxide glutathione peroxidase, mitochondrial yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 123.08 116.42 2;3 6.1675E-110 9 75713 20150910_Q1_SA_NiHu_Masterprac_group13_B 150.51 116.97 170300000 93925000 8635200 0 14294000 43309000 10134000 3159 902 3123 13841;13842;13843;13844;13845;13846;13847;13848;13849 9166;9167;9168;9169;9170;9171;9172;9173;9174 9166 9 IDALNENKVLVLDTDYKK Unmodified 2090.1259 0.12593538 292 CON__P02754 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 2 2 1 132.38 123.26 3;4 0 8 85050 20150910_Q1_SA_NiHu_Masterprac_group13_B 202.96 169.82 445360000 72826000 49870000 98329000 124800000 0 99528000 + 3160 292 3124 13850;13851;13852;13853;13854;13855;13856;13857 9175;9176;9177;9178;9179;9180;9181;9182 9175 8 IDCQQPLK Unmodified 1000.5012 0.50116577 1179 Q5CZC0-2;Q5CZC0 FSIP2 Fibrous sheath-interacting protein 2 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 81.242 77.515 2 0.014854 2 53886 20150910_Q1_SA_NiHu_Masterprac_group10_C 87.181 7.6921 59473000 16307000 31585000 0 11582000 0 0 3161 1179 3125 13858;13859;13860 9183;9184 9184 2 IDEAESLNDEELEEKEK Unmodified 2018.9168 0.91679005 500 F5GZI1;O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 98.831 97.124 3 0.00168 2 64672 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.461 48.321 4658000 0 4658000 0 0 0 0 3162 500 3126 13861 9185;9186 9186 2 IDEPLEGSEDR Unmodified 1258.5677 0.56772501 984 P61978-3;P61978-2;B4DFF1;P61978;Q5T6W5 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 85.037 75.787 2 0.0041726 4 57475 20150910_Q1_SA_NiHu_Masterprac_group15_C 78.342 5.1084 5254900 0 92914 688290 0 960870 3512800 3163 984 3127 13862;13863;13864;13865 9187;9188;9189;9190 9190 4 IDGVFAACQSGSFDK Unmodified 1600.7192 0.71915705 894 P35249;H7C1P0 RFC4 Replication factor C subunit 4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 130.63 130.03 2 1.1687E-20 1 83479 20150910_Q1_SA_NiHu_Masterprac_group10_B 108.66 90.192 37783000 0 37783000 0 0 0 0 3164 894 3128 13866 9191 9191 1 IDLKFIDTTSK Unmodified 1279.7024 0.702368 905 P39023;G5E9G0 RPL3 60S ribosomal protein L3 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 132.83 127.51 3 9.4173E-08 4 85575 20150910_Q1_SA_NiHu_Masterprac_group13_B 108.35 61.552 70564000 26857000 17035000 0 19867000 0 6806000 3165 905 3129 13867;13868;13869;13870 9192;9193;9194;9195 9192 4 IDLLASDPHEALICK Unmodified 1693.8709 0.87090667 426 E9PFZ0;P38398-4;P38398-2;P38398;E9PFC7;E7EP70;F8W8H7;E7EMP0;E9PH68;E7EWN5;Q3B891;C9IZW4;H0Y8D8 BRCA1 Breast cancer type 1 susceptibility protein yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 133.26 132.65 2 0.0038733 1 86286 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.66 27.515 3940700 0 3940700 0 0 0 0 3166 426 3130 13871 9196 9196 1 IDLTSLR Unmodified 816.47052 0.47051757 1049 Q08AF3;Q08AF3-2;B4E128 SLFN5 Schlafen family member 5 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 121.9 121.3 2 0.00068644 1 77909 20150910_Q1_SA_NiHu_Masterprac_group10_B 111.04 20.05 0 0 0 0 0 0 0 3167 1049 3131 13872 9197 9197 1 IDNLDVNR Unmodified 957.48796 0.48795855 741 O75475 PSIP1 PC4 and SFRS1-interacting protein yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 72.904 66.268 2 0.014776 2 46606 20150910_Q1_SA_NiHu_Masterprac_group10_B 87.476 19.253 2877900 0 729530 0 0 711840 1436500 3168 741 3132 13873;13874;13875 9198;9199 9199 2 IDNSNTPFLPK Unmodified 1244.6401 0.6401021 1030 Q01780;Q01780-2;B4DKG8 EXOSC10 Exosome component 10 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 125.58 116.1 2 7.0863E-55 5 76913 20150910_Q1_SA_NiHu_Masterprac_group10_C 136.96 89.251 45317000 11846000 4999800 16058000 2047300 3042200 7323400 3169 1030 3133 13876;13877;13878;13879;13880;13881 9200;9201;9202;9203;9204 9204 5 IDRPEDAGEKEHVTK Unmodified 1722.8537 0.8536767 464 Q03164-2;Q03164;E9PQG7 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 45.342 39.953 4 0.036724 1 28390 20150910_Q1_SA_NiHu_Masterprac_group10_B 37.657 15.107 5776400 711150 875010 1013600 539990 1287900 1348800 3170 464 3134 13882;13883;13884;13885;13886;13887 9205 9205 1 IDTGENKFPGSAPQQHSILSNQTSK Unmodified 2683.3202 0.32017153 1180 Q5FWF5;Q5FWF5-2 ESCO1 N-acetyltransferase ESCO1 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 114.37 105.24 4 0.0012154 2 70993 20150910_Q1_SA_NiHu_Masterprac_group10_C 51.827 40.168 15369000 3381500 2201700 2630700 2195200 2080200 2879700 3171 1180 3135 13888;13889;13890;13891;13892;13893 9206;9207 9207 2 IDTHPSPSHSSTVK Unmodified 1491.7318 0.73177065 1330 Q8NI27;Q8NI27-2;B7ZBA0;H0Y594;H7C477;H0Y7U4 THOC2 THO complex subunit 2 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 38.197 34.224 3 6.0098E-08 2 27720 20150910_Q1_SA_NiHu_Masterprac_group13_C 98.337 68.132 3483500 639500 0 1373700 475220 0 995110 3172 1330 3136 13894;13895;13896;13897 9208;9209 9208 2 IDTIEIITDRQSGK Unmodified 1587.8468 0.84680041 863 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 129.27 128.66 2 1.6988E-07 1 82306 20150910_Q1_SA_NiHu_Masterprac_group10_B 98.592 65.004 954830 0 954830 0 0 0 0 3173 863 3137 13898 9210 9210 1 IDTIEIITDRQSGKK Unmodified 1715.9418 0.94176342 863 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 3 3 118.86 109.44 3;4 6.7649E-13 10 77324 20150910_Q1_SA_NiHu_Masterprac_group15_C 102.9 52.816 150190000 27162000 0 15081000 42078000 37770000 28095000 3174 863 3138 13899;13900;13901;13902;13903;13904;13905;13906;13907;13908;13909;13910 9211;9212;9213;9214;9215;9216;9217;9218;9219;9220 9218 9 IDVASIKEK Unmodified 1001.5757 0.57571092 1087 Q13601-2;Q13601 KRR1 KRR1 small subunit processome component homolog yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 78.132 69.584 2 0.023432 1 53753 20150910_Q1_SA_NiHu_Masterprac_group15_C 99.013 49.477 2120900 0 0 0 0 970800 1150200 3175 1087 3139 13911;13912 9221 9221 1 IDVASIKEKVK Unmodified 1228.7391 0.73908786 1087 Q13601-2;Q13601 KRR1 KRR1 small subunit processome component homolog yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 98.822 89.638 3 0.0061768 4 60836 20150910_Q1_SA_NiHu_Masterprac_group13_B 89.561 38.125 12865000 3100300 2534100 3205800 2224700 1799700 0 3176 1087 3140 13913;13914;13915;13916;13917 9222;9223;9224;9225 9222 4 IEALQNHENESVYK Unmodified 1672.8057 0.80566387 957 P52292 KPNA2 Importin subunit alpha-1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 87.49 80.504 3 0.012609 1 55335 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.242 47.242 5388800 0 2600500 402550 0 0 2385800 3177 957 3141 13918;13919;13920 9226 9226 1 IEANVNSVVTEEK Unmodified 1430.7253 0.72528829 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 109.99 99.411 2 9.9342E-91 4 72816 20150910_Q1_SA_NiHu_Masterprac_group13_C 143.94 113.08 21850000 3792100 4099700 3859400 0 4009800 6089300 3178 1325 3142 13921;13922;13923;13924;13925 9227;9228;9229;9230 9227 4 IEAVEMHLTR Unmodified 1197.6176 0.61759251 1602 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 111.76 100.57 3 0.0026539 1 68647 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.827 54.509 4707400 325390 0 0 0 560310 3821700 3179 1602 3143 13926;13927;13928 9231 9231 1 IEAVEMHLTREHMK Unmodified 1722.8545 0.8545451 1602 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 2 1 2 99.33 88.322 3;4 0.01347 2 60403 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.532 30.968 7146000 0 0 1575600 0 807490 4763000 3180 1602 3144 13929;13930;13931;13932;13933 9232;9233 9233 1 IEAVYVSR Unmodified 935.50763 0.50763136 1421 Q96T37-2;Q96T37-3;Q96T37 RBM15 Putative RNA-binding protein 15 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 87.585 79.923 2 0.0073282 2 54940 20150910_Q1_SA_NiHu_Masterprac_group10_B 97.431 34.716 7618500 1012700 737440 844730 774140 1835100 2414500 3181 1421 3145 13934;13935;13936;13937;13938;13939 9234;9235 9235 2 IECEIKINHEGEVNR Unmodified 1838.8945 0.89449566 1153 Q16576;E9PC52;Q16576-2;Q5JP01 RBBP7 Histone-binding protein RBBP7 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 87.538 79.877 3;4 0.00047307 10 54869 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.513 51.43 118390000 3485900 24013000 33432000 2137800 4608900 50710000 3182 1153 3146 13940;13941;13942;13943;13944;13945;13946;13947;13948;13949;13950;13951 9236;9237;9238;9239;9240;9241;9242;9243;9244;9245 9240 10 IECEIKINHEGEVNRAR Unmodified 2066.0327 0.032720472 1153 Q16576;E9PC52;Q16576-2;Q5JP01 RBBP7 Histone-binding protein RBBP7 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 3 3 3 2 3 80.134 73.184 3;4;5 0.0050324 8 50666 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.723 45.022 361130000 14893000 36735000 193130000 10359000 10039000 95976000 3183 1153 3147 13952;13953;13954;13955;13956;13957;13958;13959;13960;13961;13962;13963;13964;13965;13966;13967 9246;9247;9248;9249;9250;9251;9252;9253 9247 8 IEDGISSTLPSKESR Unmodified 1617.821 0.82097959 1265 Q86V48-2;Q86V48-3;Q86V48;E5RFK8 LUZP1 Leucine zipper protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 96.706 87.356 3 0.0039235 1 59902 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.724 33.669 1774400 0 0 0 0 466710 1307700 3184 1265 3148 13968;13969 9254 9254 1 IEDVASHCLPQK Unmodified 1395.6816 0.68164933 1335 Q8TD26;Q8TD26-2;Q8TD26-3;C9JFU2 CHD6 Chromodomain-helicase-DNA-binding protein 6 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 83.641 74.567 3 0.023759 2 51632 20150910_Q1_SA_NiHu_Masterprac_group10_B 48.188 28.058 3159000 162290 858940 456380 0 625990 1055400 3185 1335 3149 13970;13971;13972;13973;13974 9255;9256 9255 2 IEEDTENMAEK Unmodified 1307.5551 0.55511142 1508 Q9H9H4;F5H1F6;F5H4M0 VPS37B Vacuolar protein sorting-associated protein 37B yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 60.835 53.138 2 0.0083625 1 38043 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.214 55.578 544510 0 0 0 0 178270 366240 3186 1508 3150 13975;13976 9257 9257 1 IEEIKTPDSFEESQGEEIGK Unmodified 2264.0696 0.069602293 1212 Q5VZK9-2;Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 129.89 129.28 3 0.00014672 2 82704 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.954 49.339 5436600 0 5436600 0 0 0 0 3187 1212 3151 13977 9258;9259 9259 2 IEELDQENEAALENGIK Unmodified 1913.9218 0.92181584 52 P43243;A8MXP9;D6REM6;B3KM87;P43243-2;Q68E03 MATR3;DKFZp686L22104 Matrin-3 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 132.13 122.83 2 0 3 84648 20150910_Q1_SA_NiHu_Masterprac_group10_B 264 196.35 20247000 0 11935000 8311700 0 0 0 3188 52 3152 13978;13979;13980 9260;9261;9262 9262 3 IEELNKTANGNVEAK Unmodified 1628.837 0.836964 754;1078 Q13330;Q13330-3;E7ESY4;Q13330-2;H7C3F3;O94776 MTA1;MTA2 Metastasis-associated protein MTA1;Metastasis-associated protein MTA2 no no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 1 2 68.697 60.82 2;3 2.3745E-30 6 49160 20150910_Q1_SA_NiHu_Masterprac_group13_C 114.64 54.484 69030000 654850 17652000 32680000 0 874010 17169000 3189 1078;754 3153 13981;13982;13983;13984;13985;13986;13987;13988 9263;9264;9265;9266;9267;9268 9263 6 IEEMLENAER Unmodified 1232.5707 0.5707019 558 P49959-2;F8W7U8;P49959;B3KTC7 MRE11A Double-strand break repair protein MRE11A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 102.61 92.739 2 0.017612 1 63356 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.627 30.824 3317300 0 0 420330 0 0 2896900 3190 558 3154 13989;13990 9269 9269 1 IEENSLKEEESIEGEK Unmodified 1861.8793 0.87928233 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 98.757 89.247 3 0.00041595 2 60449 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.98 71.98 17888000 0 6473200 3621200 0 501700 7291900 3191 486 3155 13991;13992;13993;13994 9270;9271 9271 2 IEENSLKEEESIEGEKEVK Unmodified 2218.0853 0.085252357 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 98.257 91.104 3;4 1.5999E-100 9 62362 20150910_Q1_SA_NiHu_Masterprac_group15_B 136.34 120.03 30304000 0 9935400 6917900 0 0 13451000 3192 486 3156 13995;13996;13997;13998;13999;14000 9272;9273;9274;9275;9276;9277;9278;9279;9280 9277 9 IEEQFANLHIVK Unmodified 1439.7773 0.77726428 586 G3V4B8;Q96FK6 WDR89 WD repeat-containing protein 89 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 132.57 122.25 3 0.0018353 2 87247 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.566 39.566 24383000 14078000 0 0 0 0 10306000 3193 586 3157 14001;14002 9281;9282 9281 2 IEESGNDEARVEGQATDEK Unmodified 2075.9243 0.92433504 539 Q8TAQ2-2;F8VTJ5;Q8TAQ2;F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 72.339 63.546 3 0.039803 1 44680 20150910_Q1_SA_NiHu_Masterprac_group10_B 33.667 25.325 2926900 291860 492940 1024300 0 611090 506750 3194 539 3158 14003;14004;14005;14006;14007 9283 9283 1 IEEYISK Unmodified 880.4542 0.45419881 1342 Q8WWY3;E7EVX8;Q8WWY3-2;E7ESA8;E7EU94;E7ESX0;E7EN72 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 67.24 63.128 2 0.038613 1 43953 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.753 22.954 5359800 473020 1336600 0 0 0 3550200 3195 1342 3159 14008;14009;14010 9284 9284 1 IEEYISKQAK Unmodified 1207.6449 0.64485312 1342 Q8WWY3;E7EVX8;Q8WWY3-2;E7ESA8;E7EU94;E7ESX0;E7EN72 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 61.139 54.542 2 0.00013253 2 44746 20150910_Q1_SA_NiHu_Masterprac_group13_C 108.47 29.913 7694300 0 1146000 1459800 897230 2042600 2148700 3196 1342 3160 14011;14012;14013;14014;14015 9285;9286 9285 2 IEFAEQINK Unmodified 1090.5659 0.56587452 1486 Q9H307;Q9H307-2 PNN Pinin yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 107.41 102.82 2 0.0071581 3 70132 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.047 48.323 3245600 969470 711810 0 232380 0 1331900 3197 1486 3161 14016;14017;14018;14019 9287;9288;9289 9287 3 IEFEPASK Unmodified 919.4651 0.46509784 1576 Q9P275;Q9P275-2;F5H3B9 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 86.125 78.39 2 6.1599E-16 6 58952 20150910_Q1_SA_NiHu_Masterprac_group15_C 128.61 92.161 58260000 12463000 5077000 6876900 5407000 12749000 15687000 3198 1576 3162 14020;14021;14022;14023;14024;14025;14026 9290;9291;9292;9293;9294;9295 9292 6 IEHDVVMK Unmodified 969.49535 0.49535211 1619 Q9UNZ5 C19orf53 Leydig cell tumor 10 kDa protein homolog yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 59.932 47.15 2 9.4414E-05 1 38768 20150910_Q1_SA_NiHu_Masterprac_group13_C 113.26 57.58 1104600 0 0 1104600 0 0 0 3199 1619 3163 14027 9296 9296 1 IEHQTITTPSK Unmodified 1253.6616 0.66156582 270 C9JU95;P40938 RFC3 Replication factor C subunit 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 48.497 47.543 3 0.037738 1 33862 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.844 30.979 802790 0 0 0 0 0 802790 3200 270 3164 14028 9297 9297 1 IEIPSCKDVAPVEK Unmodified 1583.8229 0.82289384 23 A6NHR9;A6NHR9-2 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 129.33 112.25 3 0.0015423 3 80142 20150910_Q1_SA_NiHu_Masterprac_group13_C 82.925 44.957 14894000 6943000 0 7215600 0 735720 0 3201 23 3165 14029;14030;14031 9298;9299;9300 9298 3 IEISELNRVIQR Unmodified 1468.8362 0.83617614 302;789 P35908;CON__P35908;P04264;CON__P04264 KRT2;KRT1 Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1 no no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.76 132.16 3 0.027218 1 85726 20150910_Q1_SA_NiHu_Masterprac_group10_B 48.998 8.4824 11380000 0 11380000 0 0 0 0 + 3202 302;789 3166 14032 9301 9301 1 IEKFHSQLMR Unmodified 1287.6758 0.6757761 937 P49458 SRP9 Signal recognition particle 9 kDa protein yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 82.151 73.177 3 0.0086687 1 50691 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.261 28.195 3189300 0 0 873060 0 0 2316300 3203 937 3167 14033;14034 9302 9302 1 IEKGVGGNNGGNGNGGGAFSQAR Unmodified 2116.9998 0.99984044 804 P08047;G5E9M8;H3BUU5;H3BVI2 SP1 Transcription factor Sp1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 68.693 60.121 3 0.0024337 5 42268 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.765 29.595 135810000 6241800 28126000 44835000 0 17440000 39164000 3204 804 3168 14035;14036;14037;14038;14039 9303;9304;9305;9306;9307 9305 5 IEKYNVPLNRLK Unmodified 1485.8667 0.86674799 107 F8VQE1;Q9UHB6-2;B4DN52;Q9UHB6;Q9UHB6-4;F8VRN8 LIMA1 LIM domain and actin-binding protein 1 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 111.38 98.397 3 0.011116 1 66320 20150910_Q1_SA_NiHu_Masterprac_group10_C 69.261 55.532 1458500 1458500 0 0 0 0 0 3205 107 3169 14040 9308 9308 1 IELWEQEHSK Unmodified 1297.6303 0.63026569 676 H9KV59;O43663;H0YL53;G3V3N7 PRC1 Protein regulator of cytokinesis 1 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 99.363 94.054 2;3 2.8354E-77 11 69988 20150910_Q1_SA_NiHu_Masterprac_group13_C 152.04 122.11 57721000 0 12870000 3545100 8560700 8548500 24196000 3206 676 3170 14041;14042;14043;14044;14045;14046;14047;14048;14049;14050 9309;9310;9311;9312;9313;9314;9315;9316;9317;9318;9319 9312 11 IENKPLQEQLSVNQIK Unmodified 1880.0367 0.036726442 415 F5H4I8;E9PCM7;F5H2R1;P37275;Q2KJ05;F5H8J0;F5H838;Q5VZ84;G3V1R3;F5H1R1;H0YND9;H0YME0;H0YKM9;H0YMD3;H0YK86 ZEB1 Zinc finger E-box-binding homeobox 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 124.38 121.64 3 1.3669E-26 3 77933 20150910_Q1_SA_NiHu_Masterprac_group10_B 108.06 88.399 6685000 0 1860200 0 0 0 4824800 3207 415 3171 14051;14052 9320;9321;9322 9322 3 IEPAEELNSNDMK Unmodified 1488.6766 0.67662354 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 104.87 99.232 2 0.001841 1 67589 20150910_Q1_SA_NiHu_Masterprac_group15_B 85.271 46.502 3418700 0 1018600 1149000 461120 0 790010 3208 919;920 3172 14053;14054;14055;14056 9323 9323 0 IEPGAEALR Unmodified 954.51345 0.51344502 675 H9KV46;Q86Y91;Q86Y91-2;Q86Y91-3;Q86Y91-4 KIF18B Kinesin-like protein KIF18B yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 81.774 74.63 2 0.017155 1 56679 20150910_Q1_SA_NiHu_Masterprac_group15_C 71.614 15.182 3823300 594510 757220 0 0 750500 1721000 3209 675 3173 14057;14058;14059;14060 9324 9324 1 IEPGAEALRTSGLAR Unmodified 1539.8369 0.83690442 675 H9KV46;Q86Y91;Q86Y91-2;Q86Y91-3;Q86Y91-4 KIF18B Kinesin-like protein KIF18B yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 118.68 110.44 3 0.020961 1 75781 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.317 17.803 26241000 0 5775500 5087300 2910300 407970 12060000 3210 675 3174 14061;14062;14063;14064;14065 9325 9325 1 IEPLGYCEDAESNRQLESTEFNK Unmodified 2728.2286 0.22863891 1353 Q92576-2;Q92576;E7EVH3;E9PE34;B3KP41;D6R9X2 PHF3 PHD finger protein 3 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 131.98 120.63 3 9.9357E-30 3 78247 20150910_Q1_SA_NiHu_Masterprac_group10_C 97.271 90.545 49506000 12968000 28658000 0 0 7880300 0 3211 1353 3175 14066;14067;14068 9326;9327;9328 9328 3 IEQVDKEDEITEK Unmodified 1574.7675 0.76754703 1640 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 3 2 1 2 2 76.493 67.355 2;3 1.7753E-05 8 53931 20150910_Q1_SA_NiHu_Masterprac_group13_C 98.368 75.818 44369000 17065000 0 6709400 2349900 13874000 4371100 3212 1640 3176 14069;14070;14071;14072;14073;14074;14075;14076;14077;14078 9329;9330;9331;9332;9333;9334;9335;9336 9329 8 IERVMDNNTTVKMVPIK Oxidation (M) 2003.0544 0.054367116 76 C9IZC6;B3KU73;F5H3B6;Q13796 SHROOM2 Protein Shroom2 yes no 0 1 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 100.31 92.184 4 0.016567 1 63087 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.506 30.51 9161800 330330 1206600 2218400 1359900 1553300 2493300 3213 76 3177 14079;14080;14081;14082;14083;14084 9337 9337 10 1 IESEELDR Unmodified 989.46655 0.46655441 1681 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 73.156 58.016 2 0.018279 1 46462 20150910_Q1_SA_NiHu_Masterprac_group15_C 81.296 2.1803 6453100 0 0 0 0 6453100 0 + 3214 1681 3178 14085 9338 9338 1 IESFGSPK Unmodified 863.43888 0.43888309 945 P49792;E9PGT0 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 67.492 61.937 2 0.034579 1 43481 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.812 23.796 5773900 824440 959050 0 532260 1127700 2330400 3215 945 3179 14086;14087;14088;14089;14090 9339 9339 1 IESHETANLQDDRNSQSSSVSYLESK Unmodified 2923.3432 0.34315139 1353 Q92576-2;Q92576;E7EVH3;E9PE34;B3KP41;D6R9X2 PHF3 PHD finger protein 3 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 105.93 97.972 4 7.8571E-29 4 66918 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.518 84.009 50078000 0 10778000 7356100 6186700 6290500 19467000 3216 1353 3180 14091;14092;14093;14094;14095 9340;9341;9342;9343 9341 4 IESQKLNFKEK Unmodified 1362.7507 0.75071518 388 E7EVA0;P27816-6;P27816;P27816-2;P27816-4;E9PGM5;P27816-5;B9ZVR1;H0Y2V1;B4DSQ1;F8W9U4;H7C4C5 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 62.697 59.037 3 2.389E-07 3 41702 20150910_Q1_SA_NiHu_Masterprac_group13_B 109.16 77.678 8721400 3242100 2169400 0 3309900 0 0 3217 388 3181 14096;14097;14098 9344;9345;9346 9344 3 IESSSVLSKPCSVTVASEASK Unmodified 2165.0886 0.088563596 89 B4DGW0;O75928-2;O75928;F8W7X5 PIAS2 E3 SUMO-protein ligase PIAS2 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 118.31 108.19 3 0.0022574 2 76372 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.655 36.338 7356400 0 1163100 1014600 0 1570900 3607800 3218 89 3182 14099;14100;14101;14102 9347;9348 9348 2 IETAQRQCPETEPHDTK Unmodified 2038.9378 0.93781703 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 45.215 40.334 4 0.0045484 1 28653 20150910_Q1_SA_NiHu_Masterprac_group10_B 48.216 34.58 1800200 0 586000 397670 0 0 816550 3219 1325 3183 14103;14104;14105 9349 9349 1 IETIEVMEDR Unmodified 1233.5911 0.59110299 371;955 E7EWI9;E7ERJ4;P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 126.37 118.7 2 2.4482E-48 8 82307 20150910_Q1_SA_NiHu_Masterprac_group13_C 141.91 85.479 174230000 0 22575000 92962000 9279700 16708000 32700000 3220 371;955 3184 14106;14107;14108;14109;14110;14111 9350;9351;9352;9353;9354;9355;9356;9357 9352 8 IETIEVMEDR Oxidation (M) 1249.586 0.58601761 371;955 E7EWI9;E7ERJ4;P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 1 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 97.541 88.518 2 0.029913 1 60692 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.862 50.773 3500400 0 0 717980 360000 1004900 1417500 3221 371;955 3184 14112;14113;14114;14115 9358 9358 41 1 IETIEVMEDRQSGK Unmodified 1633.7981 0.79813565 371;955 E7EWI9;E7ERJ4;P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 110.79 100.49 3 0.0014793 3 73604 20150910_Q1_SA_NiHu_Masterprac_group13_C 82.069 68.92 6251500 1151000 0 1056400 945680 538770 2559600 3222 371;955 3185 14116;14117;14118;14119;14120 9359;9360;9361 9359 3 IETIEVMEDRQSGKK Unmodified 1761.8931 0.89309867 371;955 E7EWI9;E7ERJ4;P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 95.07 87.142 3;4 1.9773E-30 12 59219 20150910_Q1_SA_NiHu_Masterprac_group13_B 114.87 95.105 237850000 27154000 28877000 42938000 44265000 50607000 44013000 3223 371;955 3186 14121;14122;14123;14124;14125;14126;14127;14128;14129;14130;14131;14132 9362;9363;9364;9365;9366;9367;9368;9369;9370;9371;9372;9373 9363 12 IEVEKPFAIAKE Unmodified 1372.7602 0.76021723 867 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 130.08 119.76 3 1.9551E-11 2 77120 20150910_Q1_SA_NiHu_Masterprac_group10_C 108.72 75.175 16479000 13662000 0 0 0 0 2817500 3224 867 3187 14133;14134 9374;9375 9375 1 IEVIEIMTDRGSGKK Unmodified 1674.8975 0.89745577 537 H0YH80;P09651-3;F8VXY0;F8VRQ1;P09651-2;F8W6I7;P09651;F8VSB5;F8W1S7;F8VTQ5;F8VZ49;Q32P51;F8VYN5 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 2 1 1 131.42 122.33 3;4 0.00055149 7 83508 20150910_Q1_SA_NiHu_Masterprac_group13_B 73.877 35.203 57443000 23697000 2921200 6348800 14073000 3351400 7051400 3225 537 3188 14135;14136;14137;14138;14139;14140;14141;14142 9376;9377;9378;9379;9380;9381;9382 9376 5 IEVLEEELR Unmodified 1128.6027 0.60265396 840 P15924;P15924-2;H7BYR0 DSP Desmoplakin yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.1 131.49 2 0.036116 1 85008 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.765 26.613 15550000 0 15550000 0 0 0 0 3226 840 3189 14143 9383 9383 1 IEVQDTSGGTTALRPSASTQALSSSVSSSK Unmodified 2951.4684 0.4683519 148 B4DZP5;Q16531;F5H581;F5GY55 DDB1 DNA damage-binding protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 130.34 122.49 3 2.3873E-180 5 85260 20150910_Q1_SA_NiHu_Masterprac_group15_B 137.03 111.21 61180000 13601000 16299000 10298000 3011200 0 17971000 3227 148 3190 14144;14145;14146;14147;14148 9384;9385;9386;9387;9388 9386 5 IEYAKPTRLNVFK Unmodified 1577.893 0.89296274 838 P14866;A6NIT8;B4DPK8;B4DVF8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 119.92 111.43 3 1.395E-08 4 80024 20150910_Q1_SA_NiHu_Masterprac_group13_C 102.4 69.468 60150000 3156900 18698000 21202000 5290100 1093500 10709000 3228 838 3191 14149;14150;14151;14152;14153;14154;14155 9389;9390;9391;9392 9390 4 IEYDCELVPR Unmodified 1292.6071 0.60708741 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 2 128.03 123.96 2 1.1378E-23 3 77972 20150910_Q1_SA_NiHu_Masterprac_group10_C 126.39 94.63 18203000 9184200 7538300 0 1480900 0 0 3229 1575 3192 14156;14157;14158;14159 9393;9394;9395 9395 3 IEYVDETGRK Unmodified 1208.6037 0.60371659 713 O43290;G3V1T2 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 63.986 57.026 3 0.0049386 5 40307 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.652 34.572 8284800 702600 1092000 1072100 556580 1931700 2929800 3230 713 3193 14160;14161;14162;14163;14164;14165 9396;9397;9398;9399;9400 9397 5 IFAPNHVVAK Unmodified 1094.6237 0.62366417 104 B4DM74;Q02543 RPL18A 60S ribosomal protein L18a yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 2 88.413 77.651 2 0.018075 2 58602 20150910_Q1_SA_NiHu_Masterprac_group15_C 65.224 1.6593 3608500 0 0 0 827210 2781300 0 3231 104 3194 14166;14167;14168 9401;9402 9401 2 IFDPQNPDENE Unmodified 1316.5521 0.55207495 924 P46109 CRKL Crk-like protein yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 107.58 98.058 2 4.5427E-42 4 72029 20150910_Q1_SA_NiHu_Masterprac_group13_C 134.98 120.2 75104000 0 0 17795000 8605400 19710000 28993000 3232 924 3195 14169;14170;14171;14172 9403;9404;9405;9406 9404 4 IFEVNASSQR Unmodified 1149.5778 0.57783619 1415 Q96QE3;Q96QE3-2 ATAD5 ATPase family AAA domain-containing protein 5 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 2 93.147 83.96 2 0.0087186 1 57539 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.659 48.237 11109000 0 0 947410 0 992800 9169000 3233 1415 3196 14173;14174;14175;14176 9407 9407 1 IFGCSECEK Unmodified 1128.458 0.45798033 1419 Q96SL8 FIZ1 Flt3-interacting zinc finger protein 1 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 66.779 63.695 2 0.0064563 2 45968 20150910_Q1_SA_NiHu_Masterprac_group10_C 91.867 39.612 7669400 1299900 1972000 0 1306800 0 3090700 3234 1419 3197 14177;14178;14179;14180 9408;9409 9409 2 IFIKPNAQKPLPQALSK Unmodified 1892.1248 0.12475359 1030 Q01780;Q01780-2;B4DKG8 EXOSC10 Exosome component 10 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 2 124.32 115.53 3;4 0.00050142 8 75804 20150910_Q1_SA_NiHu_Masterprac_group10_C 72.187 62.273 47785000 9788100 3937300 12347000 2105800 2059300 17547000 3235 1030 3198 14181;14182;14183;14184;14185;14186;14187 9410;9411;9412;9413;9414;9415;9416;9417 9417 8 IFLGGSEGTLNDCK Unmodified 1509.7133 0.71334339 1411 Q96PU4;Q96PU4-2 UHRF2 E3 ubiquitin-protein ligase UHRF2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 123.53 121.5 2 0.0050752 2 78009 20150910_Q1_SA_NiHu_Masterprac_group10_B 56.569 41.067 2748400 0 1563300 0 0 0 1185100 3236 1411 3199 14188;14189;14190 9418;9419 9419 1 IFNRSVNIMHDK Oxidation (M) 1488.7507 0.75073195 109 B4DNA9 yes yes 0 1 1 By matching By MS/MS By matching By matching By matching By matching 1 131.7 131.09 2 0.024086 1 84483 20150910_Q1_SA_NiHu_Masterprac_group10_B 49.448 16.131 89175000 0 89175000 0 0 0 0 3237 109 3200 14191 9420 9420 12 0 IFPVPEEPPVKK Unmodified 1378.786 0.78603805 778 O96006 ZBED1 Zinc finger BED domain-containing protein 1 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 125.17 116.95 3 2.659E-27 4 81675 20150910_Q1_SA_NiHu_Masterprac_group13_C 123.62 101.84 68725000 0 12220000 27005000 6491000 9468800 13540000 3238 778 3201 14192;14193;14194;14195;14196 9421;9422;9423;9424 9422 4 IFQKAPDGVRK Unmodified 1257.7194 0.71935547 1356 Q92620;B4DVG8 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 54.417 48.4 3 0.0010938 2 34537 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.597 47.563 9420500 0 2197200 1937700 619170 1153700 3512600 3239 1356 3202 14197;14198;14199;14200;14201 9425;9426 9425 2 IFQPVIEAPGASK Unmodified 1355.7449 0.74490152 1447 Q9BTC0;Q9BTC0-1;Q9BTC0-2;Q9BTC0-3 DIDO1 Death-inducer obliterator 1 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 132.35 132.05 2 0.00093701 3 85204 20150910_Q1_SA_NiHu_Masterprac_group10_B 91.307 61.381 65060000 0 31804000 0 33255000 0 0 3240 1447 3203 14202;14203 9427;9428;9429 9429 3 IFREDYSITTK Unmodified 1371.7034 0.70343063 1452 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 107.48 97.332 3 0.0052199 1 66378 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.632 46.534 2768500 0 0 0 0 678940 2089600 3241 1452 3204 14204;14205 9430 9430 1 IFRRDSDLTCLQK Unmodified 1650.8512 0.85117428 1207 Q5VVJ2;Q5VVJ2-2;Q5VVJ2-3 MYSM1 Histone H2A deubiquitinase MYSM1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 89.48 87.524 4 0.031237 1 59972 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.976 25.835 1410400 0 0 0 0 0 1410400 3242 1207 3205 14206 9431 9431 1 IFSGSSHQDLSQK Unmodified 1432.6947 0.69465686 64 B1ALA7;P60891;P21108 PRPS1;PRPS1L1 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 1 1 1 2 2 64.217 56.926 2;3 1.9026E-16 5 40377 20150910_Q1_SA_NiHu_Masterprac_group10_B 112.64 85.495 8984600 992090 905760 1576900 853830 1511500 3144400 3243 64 3206 14207;14208;14209;14210;14211;14212;14213;14214;14215 9432;9433;9434;9435;9436 9435 5 IFTGNKFTK Unmodified 1054.5811 0.58113065 427 Q9UHL9-2;Q9UHL9;E9PFE2;Q9UHL9-3 GTF2IRD1 General transcription factor II-I repeat domain-containing protein 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 85.464 69.61 2 0.034089 1 53770 20150910_Q1_SA_NiHu_Masterprac_group15_C 80.219 21.066 558660 0 0 0 0 558660 0 3244 427 3207 14216 9437 9437 1 IFTHHLCR Unmodified 1082.5444 0.54436799 682 I3L1L3;Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 48.303 47.349 2 0.023129 1 33746 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.318 56.371 580910 0 0 0 0 0 580910 3245 682 3208 14217 9438 9438 1 IFVGGIKEDTEEYNLR Unmodified 1881.9472 0.94724273 371;955 E7EWI9;E7ERJ4;P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 132.96 117.27 3 3.0378E-255 2 87494 20150910_Q1_SA_NiHu_Masterprac_group15_B 171.11 102.13 21760000 21760000 0 0 0 0 0 3246 371;955 3209 14218;14219 9439;9440 9439 2 IFVGGIPHNCGETELR Unmodified 1797.8832 0.88320269 1382 Q96EP5-2;Q96EP5 DAZAP1 DAZ-associated protein 1 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 130.36 128.5 3 0.00029721 6 85831 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.781 47.728 43966000 0 11150000 0 6109500 0 26706000 3247 1382 3210 14220;14221;14222 9441;9442;9443;9444;9445;9446 9443 6 IFVGGIPHNCGETELREYFKK Unmodified 2493.2475 0.24746427 1382 Q96EP5-2;Q96EP5 DAZAP1 DAZ-associated protein 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 132.73 127.77 4 0.0024315 1 87754 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.288 26.719 17577000 0 0 0 0 0 17577000 3248 1382 3211 14223 9447 9447 1 IFVGGLNPEATEEK Unmodified 1502.7617 0.76167379 318 D6R9P3;D6RD18;Q99729-3;D6RBZ0;Q99729-2 HNRNPAB yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 132.56 127.59 2 0.0060635 1 87492 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.898 30.483 6264700 0 0 0 0 0 6264700 3249 318 3212 14224 9448 9448 1 IFVGGLSPDTPEEK Unmodified 1487.7508 0.75077476 126 D6RF44;H0YA96;D6RAF8;H0Y8G5;H7BXN2;Q14103-4;B4DTC3;Q14103-3;Q14103-2;Q14103;F5H6R6 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 131.79 131.79 2 0.0031492 1 84742 20150910_Q1_SA_NiHu_Masterprac_group13_B 60.55 33.452 12998000 0 0 0 12998000 0 0 3250 126 3213 14225 9449 9449 1 IFVGTKGIPHLVTHDAR Unmodified 1860.037 0.037001214 993 P62701 RPS4X 40S ribosomal protein S4, X isoform yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 121.71 119.32 4 0.037489 2 76801 20150910_Q1_SA_NiHu_Masterprac_group13_B 36.451 24.246 4056900 0 0 0 1159400 0 2897500 3251 993 3214 14226;14227 9450;9451 9450 2 IFVNDDRHVMAK Unmodified 1443.7293 0.72926823 243 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;C9JFV5;Q12906;G5E9M5;B4DFG4 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 83.824 75.001 3 0.0057656 2 57082 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.694 33.69 12963000 658860 3003700 2194900 1205300 5900600 0 3252 243 3215 14228;14229;14230;14231;14232 9452;9453 9452 2 IFYIDRNASK Unmodified 1225.6455 0.64552182 1157 Q1ED39;H3BNU8 KNOP1 Lysine-rich nucleolar protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 96.614 88.392 3 0.0035075 6 59884 20150910_Q1_SA_NiHu_Masterprac_group10_C 89.047 45.751 42918000 8704400 5858400 4698100 5244900 10441000 7971300 3253 1157 3216 14233;14234;14235;14236;14237;14238;14239 9454;9455;9456;9457;9458;9459 9459 6 IFYPETTDIYDRK Unmodified 1659.8144 0.81443765 929 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 131.72 120.37 3 0.00030728 3 83712 20150910_Q1_SA_NiHu_Masterprac_group10_B 92.781 48.414 18157000 4864700 8467600 0 0 4824600 0 3254 929 3217 14240;14241;14242 9460;9461;9462 9461 3 IGAVNCGDDR Unmodified 1075.4717 0.47165656 1287 Q8IXB1;Q8IXB1-2;F8W884;Q3B7W8;E7EP04 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 43.607 41.25 2 0.0064573 1 29296 20150910_Q1_SA_NiHu_Masterprac_group10_B 85.533 53.213 6204000 803450 3894300 0 441900 0 1064400 3255 1287 3218 14243;14244;14245;14246 9463 9463 1 IGAVNCGDDRMLCR Unmodified 1635.728 0.72796437 1287 Q8IXB1;Q8IXB1-2;F8W884;Q3B7W8;E7EP04 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 93.043 91.134 3 0.0027311 2 61332 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.694 44.373 6494700 0 6494700 0 0 0 0 3256 1287 3219 14247 9464;9465 9464 2 IGCVWAADRDCAGDDLK Unmodified 1920.8458 0.8458309 258 Q13111-2;C9JLF8;Q13111-3;Q13111 CHAF1A Chromatin assembly factor 1 subunit A yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 118.55 116.72 3 0.0018446 1 79605 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.288 41.048 2748100 0 763130 0 167160 0 1817800 3257 258 3220 14248;14249;14250 9466 9466 1 IGDFGLTK Unmodified 849.45962 0.45961853 868 P23458;F5H5U8;O60674 JAK1;JAK2 Tyrosine-protein kinase JAK1;Tyrosine-protein kinase;Tyrosine-protein kinase JAK2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 109.17 106.63 2 0.035301 1 70389 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.598 33.413 2549200 0 1009500 0 0 0 1539700 3258 868 3221 14251;14252 9467 9467 1 IGDWLQER Unmodified 1015.5087 0.50869399 944 P49761-1;P49761;H3BUL5;H3BVF8;H3BQG1;P49761-3;G5E959 CLK3 Dual specificity protein kinase CLK3 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 131.88 116.19 2 0.0079665 1 77545 20150910_Q1_SA_NiHu_Masterprac_group10_C 104.01 52.678 5032900 5032900 0 0 0 0 0 3259 944 3222 14253 9468 9468 1 IGEEEIQKPEEK Unmodified 1427.7144 0.71438925 1138 Q15459;F5H048;E9PAW1 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 69.637 62.376 3 0.0033275 4 43813 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.153 58.358 4620000 538920 983020 771830 613170 672950 1040100 3260 1138 3223 14254;14255;14256;14257;14258;14259 9469;9470;9471;9472 9470 4 IGEEQSAEDAEDGPPELLFIHGGHTAK Unmodified 2846.3359 0.33588117 1153 Q16576;E9PC52;Q16576-2;Q5JNZ6 RBBP7 Histone-binding protein RBBP7 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 133.54 131.05 4 7.2825E-117 3 86552 20150910_Q1_SA_NiHu_Masterprac_group13_B 125.98 111.46 569220000 0 0 0 63391000 0 505830000 3261 1153 3224 14260;14261 9473;9474;9475 9474 3 IGEEQSPEDAEDGPPELLFIHGGHTAK Unmodified 2872.3515 0.35153123 1051 Q09028-3;Q09028;Q09028-2;Q09028-4;H0YCT5;H0YF10;H0YDK2;H0YEU5;B4DRT0 RBBP4 Histone-binding protein RBBP4 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 134.56 128.85 3;4 0 5 86471 20150910_Q1_SA_NiHu_Masterprac_group10_B 193.73 168.19 1124900000 0 76637000 302720000 73658000 0 671860000 3262 1051 3225 14262;14263;14264;14265;14266 9476;9477;9478;9479;9480 9480 5 IGEGTYGTVFKAK Unmodified 1369.7242 0.72416608 1020 Q00535-2;Q00535 CDK5 Cyclin-dependent kinase 5 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 111.15 102.21 3 0.0022763 1 74643 20150910_Q1_SA_NiHu_Masterprac_group13_C 66.326 44.546 1483300 0 0 917710 565570 0 0 3263 1020 3226 14267;14268 9481 9481 1 IGEGTYGVVYK Unmodified 1184.6077 0.60773933 589;799 P06493;P06493-2;E5RIU6;Q00526;P24941-2;P24941;G3V5T9;E7ESI2;G3V317 CDK1;CDK3;CDK2 Cyclin-dependent kinase 1;Cyclin-dependent kinase 3;Cyclin-dependent kinase 2 no no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 112.82 103.12 2 3.4112E-05 1 70433 20150910_Q1_SA_NiHu_Masterprac_group15_B 102.53 16.187 20398000 0 0 3063600 1493600 4546000 11295000 3264 799;589 3227 14269;14270;14271;14272 9482 9482 1 IGEGTYGVVYKAR Unmodified 1411.746 0.74596415 589 P24941-2;P24941;G3V5T9;E7ESI2;G3V317 CDK2 Cyclin-dependent kinase 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 2 2 2 103.93 95.727 2;3 0.0020797 7 69396 20150910_Q1_SA_NiHu_Masterprac_group15_C 83.182 46.736 100070000 13096000 12721000 16551000 10874000 15323000 31501000 3265 589 3228 14273;14274;14275;14276;14277;14278;14279;14280;14281;14282;14283 9483;9484;9485;9486;9487;9488;9489 9486 7 IGEGTYGVVYKGR Unmodified 1397.7303 0.73031409 799 P06493;P06493-2;E5RIU6 CDK1 Cyclin-dependent kinase 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 93.761 91.752 3 0.0022751 1 61821 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.728 23.299 889700 0 889700 0 0 0 0 3266 799 3229 14284 9490 9490 1 IGEVDVEQHTLAK Unmodified 1437.7464 0.74635808 413 E9PC90;P14635;Q5TZP9;H0YA62 CCNB1 G2/mitotic-specific cyclin-B1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 100.74 92.45 2;3 6.5224E-60 9 63010 20150910_Q1_SA_NiHu_Masterprac_group15_B 132.86 106.63 126890000 20298000 15866000 17785000 9622400 19729000 43585000 3267 413 3230 14285;14286;14287;14288;14289;14290;14291;14292;14293;14294;14295;14296;14297 9491;9492;9493;9494;9495;9496;9497;9498;9499 9494 8 IGGASSRGENSYGLETVCK Unmodified 1983.932 0.93200337 31 F5H545;C9JEX3;A6NN98;Q13614 MTMR2 Myotubularin-related protein 2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 100.43 92.733 3 0.008343 1 62414 20150910_Q1_SA_NiHu_Masterprac_group10_B 42.633 19.8 4297800 0 753810 1073900 495240 1211600 763300 3268 31 3231 14298;14299;14300;14301;14302 9500 9500 1 IGGDAATTVNNSTPDFGFGGQK Unmodified 2153.0025 0.0025257806 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 4 2 4 3 134.37 122.62 2;3 0 14 85699 20150910_Q1_SA_NiHu_Masterprac_group13_B 216.31 216.31 6448700000 1351000000 2318700000 683150000 818960000 1047400000 229420000 3269 1366 3232 14303;14304;14305;14306;14307;14308;14309;14310;14311;14312;14313;14314;14315;14316;14317;14318;14319 9501;9502;9503;9504;9505;9506;9507;9508;9509;9510;9511;9512;9513;9514 9501 13 IGGDAATTVNNSTPDFGFGGQKR Unmodified 2309.1036 0.10363681 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 131.24 122.98 3 0 7 83729 20150910_Q1_SA_NiHu_Masterprac_group13_B 186.45 162.25 213430000 0 70843000 50535000 31390000 8168900 52490000 3270 1366 3233 14320;14321;14322;14323;14324 9515;9516;9517;9518;9519;9520;9521 9516 7 IGGGIDVPVPR Unmodified 1078.6135 0.61349341 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 132.55 121.86 2 4.2123E-179 6 86959 20150910_Q1_SA_NiHu_Masterprac_group15_B 178.54 131.31 1111200000 197300000 248720000 144560000 59818000 127010000 333760000 3271 1366 3234 14325;14326;14327;14328;14329;14330;14331 9522;9523;9524;9525;9526;9527 9524 6 IGGGIDVPVPRHSVGVVIGR Unmodified 1983.1378 0.13777789 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 2 132.6 121.26 3;4 4.2674E-18 9 87539 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.663 84.641 1152400000 124540000 105250000 224860000 85270000 22876000 589630000 3272 1366 3235 14332;14333;14334;14335;14336;14337;14338;14339;14340;14341 9528;9529;9530;9531;9532;9533;9534;9535;9536 9530 9 IGGIGTVPVGR Unmodified 1024.6029 0.60292873 1006 Q5VTE0;P68104;Q6IQ15;Q05639 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 5 1 118.07 107.65 2 1.4795E-20 9 75802 20150910_Q1_SA_NiHu_Masterprac_group15_C 123.79 68.729 232410000 19926000 31450000 14113000 11261000 80505000 75157000 3273 1006 3236 14342;14343;14344;14345;14346;14347;14348;14349;14350;14351;14352;14353 9537;9538;9539;9540;9541;9542;9543;9544;9545 9540 7 IGHPAPNFK Unmodified 979.52395 0.52395013 1044 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 1 1 1 2 1 65.195 57.112 2 0.0061789 4 46259 20150910_Q1_SA_NiHu_Masterprac_group15_C 104.06 68.762 349060000 41781000 51674000 51196000 24108000 117490000 62815000 3274 1044 3237 14354;14355;14356;14357;14358;14359;14360;14361 9546;9547;9548;9549 9547 4 IGHRSVDSSGETTYKK Unmodified 1763.8802 0.8802258 32 Q99755-2;Q99755-3;A6PW57;Q99755;Q99755-4;A6PW58;A2A5X0 PIP5K1A Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha yes no 0 0 2 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 35.097 30.665 4 0.0024919 3 26082 20150910_Q1_SA_NiHu_Masterprac_group15_C 55.66 35.136 5332900 0 776700 1596200 1307700 549720 1102600 3275 32 3238 14362;14363;14364;14365;14366 9550;9551;9552 9552 3 IGHRYIEIFK Unmodified 1274.7135 0.71354181 322;970 D6RBM0;E9PCY7;P31943;G8JLB6;E5RGV0;E7EN40;H0YB39;P55795;B4DFK9 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H2, N-terminally processed no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 2 2 117.47 107.46 2;3 1.4742E-14 8 76344 20150910_Q1_SA_NiHu_Masterprac_group15_C 119.22 71.38 202990000 13370000 5955100 33582000 14380000 52533000 83170000 3276 322;970 3239 14367;14368;14369;14370;14371;14372;14373;14374;14375 9553;9554;9555;9556;9557;9558;9559;9560 9556 8 IGHRYIEVFK Unmodified 1260.6979 0.69789175 958 P52597;B4DKS8 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 102.49 94.673 2;3 0.0089035 6 68606 20150910_Q1_SA_NiHu_Masterprac_group15_C 79.489 36.771 114350000 0 7671700 18332000 9035400 22340000 56970000 3277 958 3240 14376;14377;14378;14379;14380;14381 9561;9562;9563;9564;9565;9566 9564 6 IGIDIDHTQSYRK Unmodified 1544.7947 0.79470526 1422 Q96T58 SPEN Msx2-interacting protein yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 97.39 89.769 3 0.0096764 2 67678 20150910_Q1_SA_NiHu_Masterprac_group13_C 49.356 27.035 5314500 0 1713300 835620 578420 917180 1270000 3278 1422 3241 14382;14383;14384;14385;14386 9567;9568 9567 2 IGLETVGVKINEK Unmodified 1398.8082 0.80823006 67 E9PRI8;F5H780;E9PMY9;E9PIR7;B2R5P6;Q16881-5;E2QRB9;Q16881-2;B7Z2S5;Q16881-4;E9PNQ6;E7ESI6;Q16881-3;E7EW10;Q16881-6;Q16881 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 129.83 129.52 3 3.1284E-15 2 82721 20150910_Q1_SA_NiHu_Masterprac_group10_B 107.53 66.762 6913500 0 2842500 0 4071000 0 0 3279 67 3242 14387;14388 9569;9570 9570 2 IGLGGRGGSGGSYGR Unmodified 1349.68 0.68000985 899 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 67.952 60.741 3 0.0025809 2 48145 20150910_Q1_SA_NiHu_Masterprac_group15_C 61.423 33.191 101950000 10253000 20465000 34349000 17353000 18880000 646990 + 3280 899 3243 14389;14390;14391;14392;14393;14394 9571;9572 9571 2 IGLLSASSK Unmodified 874.51238 0.51238239 1176 Q56NI9;E5RFE4 ESCO2 N-acetyltransferase ESCO2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 104.03 91.829 2 0.010339 1 62925 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.46 47.966 5375800 0 0 266550 0 1003900 4105300 3281 1176 3244 14395;14396;14397 9573 9573 1 IGLLSASSKNKEK Unmodified 1373.7878 0.78782897 1176 Q56NI9;E5RFE4 ESCO2 N-acetyltransferase ESCO2 yes no 0 0 2 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 62.208 54.116 3 0.0044402 3 38916 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.283 54.784 11752000 1256600 2587000 3162900 0 1780300 2964700 3282 1176 3245 14398;14399;14400;14401;14402 9574;9575;9576 9574 3 IGLSDARLK Unmodified 971.57638 0.57637963 1465 Q9BY77;Q9BY77-2;F8WCX5;B4DSH9;Q6R954;F8WEE2 POLDIP3;PDIP46 Polymerase delta-interacting protein 3 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 97.83 88.666 2 0.016783 1 60069 20150910_Q1_SA_NiHu_Masterprac_group10_B 96.034 29.763 4804700 1349300 893690 943410 1082900 535420 0 3283 1465 3246 14403;14404;14405;14406;14407 9577 9577 1 IGLVEDLNKGAKPVVVLQK Unmodified 2019.2092 0.2092115 1222 Q6KC79-2;Q6KC79;Q6KC79-3 NIPBL Nipped-B-like protein yes no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 2 1 132.86 131.46 3;4 4.935E-06 4 85746 20150910_Q1_SA_NiHu_Masterprac_group13_B 87.99 78.344 30984000 0 6135100 0 15507000 0 9342400 3284 1222 3247 14408;14409;14410;14411 9578;9579;9580;9581 9579 4 IGPLGLSPK Unmodified 880.5382 0.53820321 887 P30050 RPL12 60S ribosomal protein L12 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 119.83 115.17 2 0.021781 1 78594 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.846 30.686 573460 0 0 0 0 0 573460 3285 887 3248 14412 9582 9582 1 IGQGTFGEVFKAR Unmodified 1408.7463 0.7462985 949 P50750;P50750-2 CDK9 Cyclin-dependent kinase 9 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 131.31 129.45 3 1.6624E-35 3 86663 20150910_Q1_SA_NiHu_Masterprac_group15_B 124.6 91.057 29964000 0 7296000 0 5571900 0 17096000 3286 949 3249 14413;14414;14415 9583;9584;9585 9584 3 IGQGYLIK Unmodified 890.52255 0.52255314 905 P39023;G5E9G0;B5MCW2 RPL3 60S ribosomal protein L3 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 106.4 97.856 2 7.0072E-25 2 70525 20150910_Q1_SA_NiHu_Masterprac_group15_C 133.81 39.806 39606000 5846100 3184200 2742300 5717800 12758000 9357800 3287 905 3250 14416;14417;14418;14419;14420;14421 9586;9587 9587 2 IGQGYLIKDGK Unmodified 1190.6659 0.66592292 905 P39023;G5E9G0;B5MCW2 RPL3 60S ribosomal protein L3 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 2 1 1 1 1 1 87.482 79.676 2 0.029864 2 59983 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.091 19.411 7213300 1926700 571900 606840 1025400 2077100 1005400 3288 905 3251 14422;14423;14424;14425;14426;14427;14428 9588;9589 9588 2 IGQQPQQPGAPPQQDYTK Unmodified 1979.9701 0.97010344 1366 Q92945-2;Q92945 KHSRP Far upstream element-binding protein 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 1 4 4 87.894 80.036 2;3 5.7363E-132 22 61736 20150910_Q1_SA_NiHu_Masterprac_group13_C 145.79 145.79 1163300000 211680000 197130000 254090000 69517000 198460000 232390000 3289 1366 3252 14429;14430;14431;14432;14433;14434;14435;14436;14437;14438;14439;14440;14441;14442;14443;14444;14445;14446 9590;9591;9592;9593;9594;9595;9596;9597;9598;9599;9600;9601;9602;9603;9604;9605;9606;9607;9608;9609;9610;9611 9596 21 IGQQVDREPGDVATPPRK Unmodified 1962.0283 0.028287021 1655 Q9Y5N6;H3BT22 ORC6 Origin recognition complex subunit 6 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 75.597 69.281 4 0.0061359 1 53640 20150910_Q1_SA_NiHu_Masterprac_group15_C 44.998 18.707 9696400 1796300 0 0 2714300 2329600 2856100 3290 1655 3253 14447;14448;14449;14450 9612 9612 1 IGRNGTLTFGDVDTSDEK Unmodified 1923.9174 0.91739917 1231 Q6PJG2;F6RU81 ELMSAN1 ELM2 and SANT domain-containing protein 1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 124.12 112.76 3 2.664E-08 5 80461 20150910_Q1_SA_NiHu_Masterprac_group13_C 92.679 81.509 20495000 645500 3023100 9597900 0 2226400 5002500 3291 1231 3254 14451;14452;14453;14454;14455 9613;9614;9615;9616;9617 9613 5 IGSFAEPSSVSFSSK Unmodified 1528.7409 0.74093835 464 Q03164-2;Q03164;E9PQG7 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 132.49 114.62 2 0.018938 1 83529 20150910_Q1_SA_NiHu_Masterprac_group13_C 43.05 18.966 15865000 0 0 4044600 0 11820000 0 3292 464 3255 14456;14457 9618 9618 1 IGSNGVEMAAKFPSGSQR Unmodified 1834.8996 0.89958103 249 Q6IQ49-2;C9JIQ2;Q6IQ49;Q6IQ49-3 SDE2 Protein SDE2 homolog yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 116.03 108.42 3 0.0018247 4 72666 20150910_Q1_SA_NiHu_Masterprac_group10_C 55.322 40.558 21196000 3034100 3129600 0 1997600 5016900 8017900 3293 249 3256 14458;14459;14460;14461;14462 9619;9620;9621;9622 9622 4 IGSTENISNTKEPSEK Unmodified 1732.8479 0.84792262 1255 Q7Z6E9;Q7Z6E9-2 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 1 1 1 1 1 63.341 56.336 3 3.842E-38 4 45477 20150910_Q1_SA_NiHu_Masterprac_group15_C 118.2 84.841 15503000 3921800 1829700 2303200 2081500 2856900 2509400 3294 1255 3257 14463;14464;14465;14466;14467;14468;14469 9623;9624;9625;9626 9624 4 IGVMSLIRK Unmodified 1015.6212 0.62122133 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 131.41 128.63 2 4.6555E-06 2 83741 20150910_Q1_SA_NiHu_Masterprac_group10_B 116.37 72.602 15502000 0 6584300 0 0 0 8917700 3295 486 3258 14470;14471 9627;9628 9628 2 IGYSHENVSVIPNCQFR Unmodified 2018.9632 0.96324392 534 F8VP72;F8W043;F8W0Q1;F8W057;Q9GZN1 ACTR6 Actin-related protein 6 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 129.28 126.8 3 0.0022011 1 86727 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.646 43.593 5660800 0 0 0 1152000 0 4508800 3296 534 3259 14472;14473 9629 9629 1 IHAAQKPYRCPACGK Unmodified 1755.8661 0.86611284 1401 Q96K58;C9JHH8 ZNF668 Zinc finger protein 668 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 39.15 33.559 4 0.033305 1 28359 20150910_Q1_SA_NiHu_Masterprac_group15_C 38.445 21.916 1189800 0 0 0 0 617920 571890 3297 1401 3260 14474;14475 9630 9630 1 IHAFVQDTTLSEPRQAEIRK Unmodified 2338.2393 0.23934243 1294 Q8N1G2 FTSJD2 Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 117.08 106.84 4 0.0053098 2 75561 20150910_Q1_SA_NiHu_Masterprac_group15_C 44.662 33.975 9108600 1117800 1225500 2372600 1503600 2889200 0 3298 1294 3261 14476;14477;14478;14479;14480 9631;9632 9632 2 IHALTSENTNLKK Unmodified 1467.8045 0.80454166 512 F5H2B9;H0YNH8;G3XAG2;Q9BZF9 UACA Uveal autoantigen with coiled-coil domains and ankyrin repeats yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 63.406 55.585 3 0.006774 2 39362 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.79 28.962 2433200 371190 0 0 0 1055800 1006200 3299 512 3262 14481;14482;14483 9633;9634 9633 2 IHETQPLLNLK Unmodified 1304.7452 0.74523587 1445 Q9BSM1-3;Q9BSM1 PCGF1 Polycomb group RING finger protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 115.43 111.07 3 0.018752 1 75963 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.721 32.212 0 0 0 0 0 0 0 3300 1445 3263 14484 9635 9635 1 IHFFLSK Unmodified 890.50142 0.50142377 901 P35659;P35659-2;B4DFG0;D6R9L5;D6RDA2 DEK Protein DEK yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 1 131.39 118.92 2 5.4074E-45 4 81028 20150910_Q1_SA_NiHu_Masterprac_group15_C 148.33 89.666 176320000 54792000 8133900 24590000 0 32248000 56556000 3301 901 3264 14485;14486;14487;14488;14489;14490 9636;9637;9638;9639 9638 4 IHFPLATYAPVISAEK Unmodified 1755.956 0.95595693 518;44 G3V1U9;Q9BQE3;Q71U36;P68363;F5H5D3;F8VXZ4;Q6PEY2;Q13748;E9PGK3;Q13748-2;F8VVB9;C9JDS9;A8MUB1;P68366 TUBA1A;TUBA1C;TUBA1B;TUBA3E;TUBA3C;TUBA4A Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-3E chain;Tubulin alpha-3C/D chain;Tubulin alpha-4A chain no no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 133.76 133.15 3 0.026555 1 86839 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.884 43.644 30236000 0 30236000 0 0 0 0 3302 518;44 3265 14491 9640 9640 0 IHGYVDEVMTR Unmodified 1318.634 0.63397086 1306 Q8N6T7-4;Q8N6T7-2;Q8N6T7;B4DDV3 SIRT6 NAD-dependent protein deacetylase sirtuin-6 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 108.88 98.681 3 0.016783 1 67165 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.721 29.829 3005500 0 0 0 0 553010 2452500 3303 1306 3266 14492;14493 9641 9641 1 IHNGEKPYTCNECGK Unmodified 1805.7825 0.78250237 835 P13682;B4DUB8 ZNF35 Zinc finger protein 35 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 35.284 30.763 3 0.0051944 3 21622 20150910_Q1_SA_NiHu_Masterprac_group10_C 52.966 34.552 5307400 761160 962450 1399900 530340 602690 1050900 3304 835 3267 14494;14495;14496;14497;14498;14499 9642;9643;9644 9644 3 IHNVGSPLK Unmodified 963.55016 0.55016488 959 P52701;B4DF41;F5H2F9;F5H769;P52701-2 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 58.776 52.826 2 0.010101 2 37933 20150910_Q1_SA_NiHu_Masterprac_group15_B 100.25 67.353 1252000 0 344000 188700 0 0 719280 3305 959 3268 14500;14501;14502 9645;9646 9645 2 IHQEGDALPGHSKPSR Unmodified 1727.8703 0.87032982 1157 Q1ED39;H3BPL4 KNOP1 Lysine-rich nucleolar protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 44.016 38.743 3;4 0.00027145 7 32647 20150910_Q1_SA_NiHu_Masterprac_group15_C 71.286 57.058 35367000 2421200 4223600 2951500 3237100 10232000 12301000 3306 1157 3269 14503;14504;14505;14506;14507;14508;14509;14510;14511;14512;14513;14514 9647;9648;9649;9650;9651;9652;9653 9650 7 IHQIEYAMEAVK Unmodified 1430.7228 0.72278587 876 P25786;P25786-2;B4DEV8 PSMA1 Proteasome subunit alpha type-1;Proteasome subunit alpha type yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 119.51 116.78 3 0.0024165 1 79544 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.705 52.501 2808000 0 918330 0 0 0 1889700 3307 876 3270 14515;14516 9654 9654 1 IHRGERPYICADCGK Unmodified 1830.8618 0.86175574 1586 Q9UEG4 ZNF629 Zinc finger protein 629 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 51.261 50.206 4 0.033776 1 35807 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.337 20.551 2403200 0 0 0 0 0 2403200 3308 1586 3271 14517 9655 9655 1 IHSDCAANQQVTYR Unmodified 1661.758 0.75800217 1033 Q02413 DSG1 Desmoglein-1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 61.177 54.417 3 0.00092187 5 38897 20150910_Q1_SA_NiHu_Masterprac_group10_B 74.789 59.596 11978000 644490 1960500 2563300 3730300 1886000 1193500 3309 1033 3272 14518;14519;14520;14521;14522;14523 9656;9657;9658;9659;9660 9659 5 IHSGAKPYSCNFCEK Unmodified 1796.7974 0.79742415 555 Q8TF68-3;F8W6Q3;Q8TF68-2;Q8TF68;E9PHB3;F5H8L7 ZNF384 Zinc finger protein 384 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 3 1 1 2 2 2 67.722 60.822 3;4 0.0016668 5 42879 20150910_Q1_SA_NiHu_Masterprac_group10_C 68.277 59.963 37030000 7206400 999560 1422600 3814600 12470000 11117000 3310 555 3273 14524;14525;14526;14527;14528;14529;14530;14531;14532;14533;14534 9661;9662;9663;9664;9665 9664 5 IHSGDLPYVCNECGK Unmodified 1747.7658 0.76578967 835 P13682;B4DUB8 ZNF35 Zinc finger protein 35 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 109.49 97.13 3 0.0025311 3 70158 20150910_Q1_SA_NiHu_Masterprac_group15_C 57.788 35.296 6878600 1063500 1780400 986890 0 3047900 0 3311 835 3274 14535;14536;14537;14538 9666;9667;9668 9666 3 IHSGEKPYECNECGK Unmodified 1806.7665 0.76651795 74 B3KRF7;E9PC66;P17029 ZKSCAN1 Zinc finger protein with KRAB and SCAN domains 1 no no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 38.922 34.148 3 0.0055448 2 23657 20150910_Q1_SA_NiHu_Masterprac_group10_B 52.5 14.163 3462700 0 558390 884170 160240 430360 1429500 3312 74 3275 14539;14540;14541;14542;14543 9669;9670 9670 2 IHSGEKPYGCVECGK Unmodified 1719.7709 0.77087505 844 P17028 ZNF24 Zinc finger protein 24 yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 1 53.699 46.63 3;4 2.0046E-08 5 33389 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.273 59.659 21599000 1525000 2893700 2627200 745830 5204500 8603300 3313 844 3276 14544;14545;14546;14547;14548;14549;14550 9671;9672;9673;9674;9675 9673 5 IHTAEKPYDCSECGK Unmodified 1793.7713 0.77126898 835 P13682;B4DUB8 ZNF35 Zinc finger protein 35 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 47.421 41.864 3;4 0.0043257 3 35129 20150910_Q1_SA_NiHu_Masterprac_group15_C 54.951 19.896 20341000 2623400 2283600 2256500 2059700 4514200 6603100 3314 835 3277 14551;14552;14553;14554;14555;14556;14557;14558;14559;14560;14561;14562 9676;9677;9678 9677 3 IHTGEKPFACNDCGK Unmodified 1732.7661 0.76612402 835 P13682;B4DUB8 ZNF35 Zinc finger protein 35 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 2 2 2 2 1 57.041 50.232 3;4 0.0025475 4 41286 20150910_Q1_SA_NiHu_Masterprac_group15_C 60.901 45.931 17602000 971560 2361700 2903700 3515300 6440800 1408600 3315 835 3278 14563;14564;14565;14566;14567;14568;14569;14570;14571;14572 9679;9680;9681;9682 9682 4 IHTGEKPFECHECGK Unmodified 1827.8032 0.80323781 835 P13682;B4DUB8 ZNF35 Zinc finger protein 35 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 50.832 44.907 4 0.0017481 3 32237 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.168 50.742 11981000 1060800 1404400 1404500 1296700 2594500 4220300 3316 835 3279 14573;14574;14575;14576;14577;14578 9683;9684;9685 9684 3 IHTGEKPFRCDECGMR Unmodified 1991.8764 0.87641953 1626 Q9UQR1;F5H173 ZNF148 Zinc finger protein 148 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 68.452 61.373 4 0.0056322 1 42729 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.506 39.995 11700000 0 993610 1072000 799940 1509800 7325000 3317 1626 3280 14579;14580;14581;14582;14583 9686 9686 1 IHTGEKPYACNECGK Unmodified 1762.7767 0.77668871 845 P17036 ZNF3 Zinc finger protein 3 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 45.67 38.016 3 0.034847 1 26722 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.068 4.0311 1689600 0 0 442460 0 484170 762990 3318 845 3281 14584;14585;14586 9687 9687 1 IHTGEKPYDCKECGK Unmodified 1820.8186 0.81855352 102 B4DM57;Q9Y2G7;Q3KNS6-2;Q3KNS6;Q8NA42;Q8N972;A8MQ14 ZFP30;ZNF829;ZNF383;ZNF709;ZNF850 Zinc finger protein 30 homolog;Zinc finger protein 829;Zinc finger protein 383;Zinc finger protein 709;Zinc finger protein 850 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 39.481 29.83 4 0.019874 1 25674 20150910_Q1_SA_NiHu_Masterprac_group15_C 41.577 1.6302 905050 0 0 562050 0 343000 0 3319 102 3282 14587;14588 9688 9688 1 IHTGEKPYECDECGK Unmodified 1821.7662 0.7661836 1147 Q15776 ZKSCAN8 Zinc finger protein with KRAB and SCAN domains 8 no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 42.992 37.836 4 0.0038392 1 26608 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.139 5.917 4604900 260410 603250 484990 466200 676330 2113800 3320 1147 3283 14589;14590;14591;14592;14593;14594 9689 9689 1 IHTGEKPYECDQCGK Unmodified 1820.7822 0.78216801 1240 Q6ZN57 ZFP2 Zinc finger protein 2 homolog yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 47.582 39.694 3 0.0025123 3 27987 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.248 1.8336 13724000 0 0 2871700 0 4737300 6115100 3321 1240 3284 14595;14596;14597 9690;9691;9692 9691 3 IHTGEKPYECEECGK Unmodified 1835.7818 0.78183366 1406 Q96LW9;C9J423;Q6P178 ZSCAN31 Zinc finger and SCAN domain-containing protein 31 no no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 2 1 2 2 2 2 50.275 44.141 3;4 2.5105E-13 3 31575 20150910_Q1_SA_NiHu_Masterprac_group15_B 102.33 89.928 28852000 2607100 1785900 3494900 2705600 6339800 11919000 3322 1406 3285 14598;14599;14600;14601;14602;14603;14604;14605;14606;14607;14608 9693;9694;9695 9693 3 IHTGEKPYECNECGK Unmodified 1820.7822 0.78216801 977;845 P17036;P58317;B4DNH5 ZNF3;ZNF121 Zinc finger protein 3;Zinc finger protein 121 no no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 42.533 39.6 3 0.0091032 2 28951 20150910_Q1_SA_NiHu_Masterprac_group10_C 47.774 0 5277700 2834600 0 0 2443100 0 0 3323 845;977 3286 14609;14610 9696;9697 9697 2 IHTGEKPYECVQCGK Unmodified 1804.8236 0.8236389 844 P17028 ZNF24 Zinc finger protein 24 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 1 2 2 62.914 55.472 3;4 0.00011764 7 39205 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.163 28.938 36558000 0 8317400 2921800 0 4044700 21274000 3324 844 3287 14611;14612;14613;14614;14615;14616;14617 9698;9699;9700;9701;9702;9703;9704 9702 7 IHTGEKPYQCDECGK Unmodified 1820.7822 0.78216801 714 O43309 ZSCAN12 Zinc finger and SCAN domain-containing protein 12 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 2 1 1 1 1 44.536 39.629 3;4 0.00087896 2 28058 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.204 5.2709 17301000 2241400 3312500 2233900 2221300 2620800 4671400 3325 714 3288 14618;14619;14620;14621;14622;14623;14624 9705;9706 9705 2 IHTGEKPYQCDTCGK Unmodified 1792.7873 0.78725339 194 B7Z7H3;Q969J2 ZKSCAN4 Zinc finger protein with KRAB and SCAN domains 4 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 44.263 38.957 3 0.0008586 1 32872 20150910_Q1_SA_NiHu_Masterprac_group15_C 77.42 5.8917 7189100 663190 859240 1456500 553960 1290800 2365400 3326 194 3289 14625;14626;14627;14628;14629;14630 9707 9707 1 IHTGEKPYQCNMCGK Unmodified 1821.796 0.79604394 194 B7Z7H3;Q969J2;H7C1Y5;H7BY15 ZKSCAN4 Zinc finger protein with KRAB and SCAN domains 4 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 57.276 50.978 3 0.0021696 1 36336 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.019 61.646 7527500 0 983860 1496600 915530 1457000 2674500 3327 194 3290 14631;14632;14633;14634;14635 9708 9708 1 IHTGEKPYVCQECGK Unmodified 1804.8236 0.8236389 508 Q96SK3-2;F5H141;Q96SK3;F8WEC7;Q8WTR7 ZNF607;ZNF473 Zinc finger protein 607;Zinc finger protein 473 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 63.168 55.399 3 0.0025025 1 41019 20150910_Q1_SA_NiHu_Masterprac_group10_C 60.196 0 1317600 1317600 0 0 0 0 0 3328 508 3291 14636 9709 9709 1 IHTGERPHVCPDCGK Unmodified 1761.8039 0.80390651 1282 Q8IWY8-2;Q8IWY8;Q8IWY8-4 ZSCAN29 Zinc finger and SCAN domain-containing protein 29 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 47.804 42.309 4 0.019141 1 35401 20150910_Q1_SA_NiHu_Masterprac_group15_C 43.305 21.491 4520500 0 1067800 1029700 392730 577450 1452900 3329 1282 3292 14637;14638;14639;14640;14641 9710 9710 1 IHTGERPYECNECGK Unmodified 1848.7883 0.78831603 353 E7ENV5;O75123 ZNF623 Zinc finger protein 623 no no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 48.051 42.786 3 0.011066 1 35840 20150910_Q1_SA_NiHu_Masterprac_group15_C 46.704 39.888 3684100 0 778540 0 0 1244900 1660700 3330 353 3293 14642;14643;14644 9711 9711 1 IHTGQKPYVCSK Unmodified 1416.7184 0.71836919 835 P13682;B4DUB8 ZNF35 Zinc finger protein 35 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 39.261 35.099 3 0.026451 2 28449 20150910_Q1_SA_NiHu_Masterprac_group13_C 49.333 17.575 1856100 0 935980 834730 85345 0 0 3331 835 3294 14645;14646;14647 9712;9713 9712 2 IHTGYKPYSCEVCGK Unmodified 1797.8178 0.81782524 722 O43829 ZBTB14 Zinc finger and BTB domain-containing protein 14 yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 76.365 68.887 3 0.02113 2 53467 20150910_Q1_SA_NiHu_Masterprac_group15_C 42.242 18.286 11667000 1580400 1331900 1248600 1215700 2084500 4206100 3332 722 3295 14648;14649;14650;14651;14652;14653 9714;9715 9715 2 IHVQSSSDSSDEPAEK Unmodified 1714.7646 0.76458692 1341 Q8WUF8-3;Q8WUF8;B4DMI0;Q8WUF8-2;E9PBM2;Q8WUF8-4 FAM172A Protein FAM172A yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 49.573 42.628 3 0.0048609 2 30398 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.423 37.778 2110700 0 548210 259550 0 266840 1036100 3333 1341 3296 14654;14655;14656;14657 9716;9717 9716 2 IHYCDYPGCTK Unmodified 1412.5853 0.58530611 9 A2TJX0;B4DL96;Q13887 KLF5 Krueppel-like factor 5 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 78.103 67.688 2 1.9934E-05 2 47298 20150910_Q1_SA_NiHu_Masterprac_group15_B 104.43 93.488 2740400 426490 0 545960 0 676940 1091100 3334 9 3297 14658;14659;14660;14661 9718;9719 9718 2 IHYCDYPGCTKVYTK Unmodified 1903.8597 0.85969005 9 A2TJX0;B4DL96;Q13887 KLF5 Krueppel-like factor 5 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 96.548 87.592 3 0.0017643 2 59917 20150910_Q1_SA_NiHu_Masterprac_group10_C 68.033 52.743 2263300 1230300 0 561320 471680 0 0 3335 9 3298 14662;14663;14664 9720;9721 9721 2 IIAEKTKIPAVFK Unmodified 1456.9017 0.90173651 292 CON__P02754 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1 123.76 114.29 3 1.5986E-73 7 80791 20150910_Q1_SA_NiHu_Masterprac_group13_C 138.42 102.83 81584000 21232000 14834000 19801000 6184200 4891900 14642000 + 3336 292 3299 14665;14666;14667;14668;14669;14670;14671;14672 9722;9723;9724;9725;9726;9727;9728 9723 7 IIEILESGHLRK Unmodified 1406.8245 0.82454882 1183 Q5JQP8;Q9HAJ3;Q9UGP5;Q5JQP3;Q5JQP4;Q9BTN8;B4DEF5;Q5JQP2 POLL DNA polymerase lambda yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 127.61 114.14 3 0.00017726 2 79730 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.82 69.585 8787900 0 0 4140600 0 3016100 1631200 3337 1183 3300 14673;14674;14675 9729;9730 9730 2 IIELKSEILSK Unmodified 1271.7701 0.77005364 1362 Q92878-2;Q92878;Q92878-3;E7EN38;E7ESD9 RAD50 DNA repair protein RAD50 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 132.2 116.51 3 0.0042239 1 77877 20150910_Q1_SA_NiHu_Masterprac_group10_C 78.513 35.216 3839900 3839900 0 0 0 0 0 3338 1362 3301 14676 9731 9731 1 IIEPIQSR Unmodified 954.54983 0.54983053 895 P35250-2;P35250;H7C5P4 RFC2 Replication factor C subunit 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 86.886 80.084 2 0.029415 1 55045 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.379 20.034 2469900 0 470060 0 0 927270 1072500 3339 895 3302 14677;14678;14679 9732 9732 1 IIEQINEDTGTAR Unmodified 1458.7314 0.7314363 1122 Q14CA3;Q14669 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 91.451 86.905 2 0.038415 1 59186 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.891 38.327 2396300 306010 747670 0 0 0 1342600 3340 1122 3303 14680;14681;14682 9733 9733 0 IIETENMMDRIVTGLSESSVK 2 Oxidation (M) 2383.1611 0.16107661 41 C9J2I1;H0YGM5;B7Z637;B7Z441;Q8IUR7-3;F5GWK4;Q8IUR7-2;A8MTG8;Q8IUR7 ARMC8 Armadillo repeat-containing protein 8 yes no 0 2 1 By matching By MS/MS By matching By matching By matching By matching 1 133.38 132.78 3 0.032471 1 86400 20150910_Q1_SA_NiHu_Masterprac_group10_B 41.513 7.8062 0 0 0 0 0 0 0 3341 41 3304 14683 9734 9734 7;8 1 IIGAGKPWHK Unmodified 1105.6396 0.63964859 1152 Q16527;F8VW96;F8VQR7 CSRP2 Cysteine and glycine-rich protein 2 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 64.539 57.72 2 0.0059514 2 47082 20150910_Q1_SA_NiHu_Masterprac_group13_C 101.9 73.099 12469000 0 1338800 5769100 730390 1599100 3031300 3342 1152 3305 14684;14685;14686;14687;14688 9735;9736 9735 2 IIGINGDFFANMVVDAVLAIK Unmodified 2219.2024 0.20241156 363 E7EQR6;E7ERF2;P17987 TCP1 T-complex protein 1 subunit alpha yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 4 2 135.29 124.29 2;3 1.6113E-82 15 88175 20150910_Q1_SA_NiHu_Masterprac_group13_B 116.43 106.36 473770000 44057000 86763000 134900000 31509000 92679000 83872000 3343 363 3306 14689;14690;14691;14692;14693;14694;14695;14696;14697;14698;14699;14700;14701 9737;9738;9739;9740;9741;9742;9743;9744;9745;9746;9747;9748;9749;9750;9751 9737 14 IIGINGDFFANMVVDAVLAIK Oxidation (M) 2235.1973 0.19732618 363 E7EQR6;E7ERF2;P17987 TCP1 T-complex protein 1 subunit alpha yes no 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 1 134.3 121.8 2;3 0 4 87547 20150910_Q1_SA_NiHu_Masterprac_group10_B 197.6 177.47 261790000 153600000 32659000 75529000 0 0 0 3344 363 3306 14702;14703;14704;14705 9752;9753;9754;9755 9753 40 4 IIGINGDFFANMVVDAVLAIKYTDIR Unmodified 2867.5255 0.52553662 363 E7EQR6;E7ERF2;P17987 TCP1 T-complex protein 1 subunit alpha yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 134.89 126.32 3 1.0842E-189 3 81299 20150910_Q1_SA_NiHu_Masterprac_group10_C 146.45 146.45 184490000 64520000 29803000 31207000 58957000 0 0 3345 363 3307 14706;14707;14708;14709 9756;9757;9758 9758 3 IIHTGEKPYECSECGK Unmodified 1906.8553 0.85533296 74 B3KRF7;E9PC66;P17029 ZKSCAN1 Zinc finger protein with KRAB and SCAN domains 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 59.518 52.858 3 0.019605 1 37680 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.014 29.425 5947200 511050 693480 1594800 744990 578210 1824700 3346 74 3308 14710;14711;14712;14713;14714;14715 9759 9759 1 IIISKHDGGSPSIKAK Unmodified 1649.9465 0.94645487 1143 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 72.662 57.674 4 0.0023008 1 47123 20150910_Q1_SA_NiHu_Masterprac_group13_C 56.514 38.101 591500 0 0 591500 0 0 0 3347 1143 3309 14716 9760 9760 1 IIKEQPQPSGK Unmodified 1223.6874 0.68738664 919;920 P46013;F5H4V4;P46013-2;E7EN66 MKI67 Antigen KI-67 no no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 38.955 32.687 3 0.01272 1 22625 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.958 32.425 1255100 0 1086800 0 0 168280 0 3348 919;920 3310 14717;14718 9761 9761 1 IIKEQPQPSGKQESGSEIHVEVK Unmodified 2546.334 0.33403068 919;920 P46013;F5H4V4;P46013-2;E7EN66 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 87.674 80.076 4;5 2.6387E-54 9 61855 20150910_Q1_SA_NiHu_Masterprac_group13_C 108.13 92.61 68068000 6861400 12754000 13425000 7783100 8899600 18345000 3349 919;920 3311 14719;14720;14721;14722;14723;14724;14725;14726;14727;14728;14729 9762;9763;9764;9765;9766;9767;9768;9769;9770 9765 9 IIKPDPEDLQLDK Unmodified 1522.8243 0.82427405 190 B7Z5N6;Q5T1V6-2;Q5T1V6;Q5T1V5 DDX59 Probable ATP-dependent RNA helicase DDX59 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 129.91 129.3 3 0.0037224 1 82703 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.292 43.185 3323200 0 3323200 0 0 0 0 3350 190 3312 14730 9771 9771 1 IIKPLQYQSTVASGTVAR Unmodified 1931.084 0.084010986 1092 Q13823 GNL2 Nucleolar GTP-binding protein 2 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 128.29 120.44 3 0.0010047 2 84210 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.812 52.931 5592300 0 1170800 1336900 0 0 3084600 3351 1092 3313 14731;14732;14733 9772;9773 9773 2 IILDEAHNVKNPR Unmodified 1517.8314 0.83142511 1618 Q9UNY4 TTF2 Transcription termination factor 2 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 83.083 78.12 3 0.017403 1 53851 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.354 35.884 1072900 265130 0 0 0 0 807730 3352 1618 3314 14734;14735 9774 9774 1 IILPNVNSDSVHTK Unmodified 1535.8308 0.83075641 1144 Q15652-2;Q15652-3;Q15652;H7BXU7 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 121.82 114.73 3 5.7605E-20 2 75737 20150910_Q1_SA_NiHu_Masterprac_group10_C 107.93 77.591 4374600 2097900 858090 0 0 0 1418700 3353 1144 3315 14736;14737;14738 9775;9776 9776 2 IILQPCGSK Unmodified 1014.5532 0.55320134 601 Q2L6G8;Q15517;G8JLG2 CDSN Corneodesmosin yes no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 2 2 87.336 79.508 2 0.00021076 2 59695 20150910_Q1_SA_NiHu_Masterprac_group15_C 112.11 43.32 52988000 0 6506200 14389000 14754000 8747300 8591000 3354 601 3316 14739;14740;14741;14742;14743;14744;14745 9777;9778 9778 2 IILSDEGK Unmodified 873.48075 0.48074791 606;12;1429 H0Y3A6;H0YGS2;H0Y308;Q15561;Q15562;H0YCZ6;H0Y7B0;A4FUP2;H0YEJ9;P28347;H0YE88;Q99594 TEAD4;TEAD2;TEAD1;TEAD3 Transcriptional enhancer factor TEF-3;Transcriptional enhancer factor TEF-4;Transcriptional enhancer factor TEF-1;Transcriptional enhancer factor TEF-5 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 1 74.016 64.697 1;2 0.0061452 8 45597 20150910_Q1_SA_NiHu_Masterprac_group13_B 107.29 50.192 123520000 19018000 12628000 14909000 8568500 30206000 38194000 3355 606;12;1429 3317 14746;14747;14748;14749;14750;14751;14752;14753;14754 9779;9780;9781;9782;9783;9784;9785;9786 9779 8 IINDNATYCR Unmodified 1238.5714 0.5713706 692 O00567;Q5JXT2 NOP56 Nucleolar protein 56 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 68.148 62.573 2 0.0027003 4 43715 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.283 78.505 6910100 563290 547080 0 417730 2283900 3098100 3356 692 3318 14755;14756;14757;14758;14759 9787;9788;9789;9790 9787 4 IINEPTAAAIAYGLDK Unmodified 1658.8879 0.88793694 824;823 P11142;E9PKE3;P11142-2;E9PN89;E9PLF4;P54652;E9PI65;F8W1P1;B4DXY3;F8WEE3;Q53FA3;P34931;H0YIE7;P11021;B4DEF7 HSPA8;HSPA2;HSPA1L;HSPA5 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 1-like;78 kDa glucose-regulated protein no no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 133.52 115.68 2 0.018873 1 82617 20150910_Q1_SA_NiHu_Masterprac_group15_C 41.088 16.159 101500000 0 0 0 0 101500000 0 3357 824;823 3319 14760 9791 9791 1 IINGIVQK Unmodified 883.5491 0.54910224 758 O94913;E9PKN0;E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 83.339 75.761 2 0.025385 2 52331 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.189 32.275 5913300 575710 600750 495010 543020 1258500 2440400 3358 758 3320 14761;14762;14763;14764;14765;14766 9792;9793 9792 2 IINLDNESQTTSSSNNEKPGEQEK Unmodified 2661.2366 0.23656105 264 Q8TAF3-2;C9JQ19;Q8TAF3-5;Q8TAF3-4;Q8TAF3-3;Q8TAF3 WDR48 WD repeat-containing protein 48 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 90.761 83.016 3 1.3135E-08 4 63431 20150910_Q1_SA_NiHu_Masterprac_group13_C 70.452 63.805 13724000 1936500 3259300 2353600 1470200 1511100 3193600 3359 264 3321 14767;14768;14769;14770;14771;14772 9794;9795;9796;9797 9794 4 IIPEITAMK Unmodified 1014.5784 0.57835346 1035 Q02880-2;Q02880;B4DLV2 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 132.56 122.21 2 0.0061685 3 87547 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.178 19.513 90427000 0 24929000 18801000 0 6300500 40397000 3360 1035 3322 14773;14774;14775;14776 9798;9799;9800 9799 3 IIPGFMCQGGDFTRHNGTGGK Unmodified 2249.047 0.046990328 999 P62937;B4DM82;F8WE65;C9J5S7 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 1 131.61 120.02 3;4 6.2804E-46 8 80714 20150910_Q1_SA_NiHu_Masterprac_group15_C 111.63 87.205 137880000 5611300 29186000 36662000 20522000 14595000 31305000 3361 999 3323 14777;14778;14779;14780;14781;14782;14783;14784 9801;9802;9803;9804;9805;9806;9807;9808 9806 7 IIQEFLSK Unmodified 976.55933 0.55933258 162 B4E2Z2;P43246;B4DL39;B4DSB9 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 126.93 117.46 2 0.0088271 4 81952 20150910_Q1_SA_NiHu_Masterprac_group15_B 100.02 36.598 33573000 7599900 2821600 6440900 1408800 2360200 12942000 3362 162 3324 14785;14786;14787;14788;14789;14790 9809;9810;9811;9812 9810 4 IIQEFLSKVK Unmodified 1203.7227 0.72270951 162 B4E2Z2;P43246;B4DL39;B4DSB9 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 132.46 129.98 3 0.0025663 2 85248 20150910_Q1_SA_NiHu_Masterprac_group13_B 101.38 30.969 22159000 0 0 0 2032200 0 20127000 3363 162 3325 14791;14792 9813;9814 9813 2 IIQQGLIR Unmodified 939.58655 0.58655038 170 Q86YP4;B5MC40;Q86YP4-2;B4DKZ7 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 100.99 93.839 2 0.02547 1 62912 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.109 19.433 18099000 0 4099900 3015600 0 0 10983000 3364 170 3326 14793;14794;14795 9815 9815 1 IISDNLTYCK Unmodified 1225.6013 0.60127375 1640 Q9Y2X3;H7BZ72 NOP58 Nucleolar protein 58 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 104.03 97.092 2 0.0031326 4 66051 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.549 38.824 56012000 6874900 7728500 0 5279600 15083000 21046000 3365 1640 3327 14796;14797;14798;14799;14800 9816;9817;9818;9819 9817 4 IISNASCTTNCLAPLAK Unmodified 1832.9125 0.91245391 791 P04406;E7EUT5;E7EUT4;E7EU54 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 130.63 121.13 2 3.1975E-131 4 77840 20150910_Q1_SA_NiHu_Masterprac_group10_C 142.94 114.31 71757000 29365000 6355700 12089000 2940200 7377800 13628000 3366 791 3328 14801;14802;14803;14804;14805;14806 9820;9821;9822;9823 9823 4 IISSNIVSGTTTK Unmodified 1319.7296 0.72964538 208 Q7Z589-2;E9PMC9;Q7Z589;Q17RM7;B7ZKU2;B7ZKU0;B7ZKT8 EMSY;C11orf30 Protein EMSY yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 96.451 94.094 2 0.0024508 1 64187 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.043 33.621 1010700 0 0 0 0 0 1010700 3367 208 3329 14807 9824 9824 1 IISTTTLNK Unmodified 989.57571 0.57571092 300 F8VS64;P19013;CON__P19013;F5H8K9 KRT4 Keratin, type II cytoskeletal 4 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 79.95 71.478 2 0.0060764 1 49601 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.598 62.176 38520000 0 0 7562300 702980 7931400 22324000 + 3368 300 3330 14808;14809;14810;14811 9825 9825 1 IITDVIGNPEEERR Unmodified 1639.8529 0.85294842 217 Q92925-3;B9EGA3;Q92925-2;Q92925 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 121.53 113.76 3 0.0068134 1 77663 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.568 22.586 3307000 0 700230 0 0 958940 1647900 3369 217 3331 14812;14813;14814 9826 9826 1 IITHPNFNGNTLDNDIMLIK Unmodified 2282.1729 0.17290235 284 CON__P00761 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 135.55 135.55 3 0.0076928 1 88604 20150910_Q1_SA_NiHu_Masterprac_group13_B 41.41 25.517 2138500 0 0 0 2138500 0 0 + 3370 284 3332 14815 9827 9827 1 IITIEETHEELK Unmodified 1453.7664 0.76642482 1351 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 2 115.18 106.59 2;3 1.4304E-18 7 75518 20150910_Q1_SA_NiHu_Masterprac_group15_C 117.25 86.393 25845000 1927400 4312400 3248700 2394100 7252200 6710600 3371 1351 3333 14816;14817;14818;14819;14820;14821;14822;14823;14824 9828;9829;9830;9831;9832;9833;9834 9833 7 IITIEETHEELKK Unmodified 1581.8614 0.86138784 1351 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 2 1 103.51 90.871 3 0.0013032 2 66661 20150910_Q1_SA_NiHu_Masterprac_group15_C 64.945 47.81 11915000 1504600 0 1727700 0 3749700 4932600 3372 1351 3334 14825;14826;14827;14828;14829 9835;9836 9836 2 IITQQVQPSK Unmodified 1140.6503 0.65027285 208 Q7Z589-2;E9PMC9;Q7Z589;Q17RM7;B7ZKU2;B7ZKU0;B7ZKT8;F5H2F0;E9PPE6 EMSY;C11orf30 Protein EMSY yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 66.919 58.771 2 0.0086142 1 41488 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.916 35.894 1308200 0 0 0 0 405330 902900 3373 208 3335 14830;14831 9837 9837 1 IIVGDATEK Unmodified 944.51786 0.51786169 1395 Q96I25;H0Y6J6 RBM17 Splicing factor 45 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 2 1 67.39 60.271 2 0.0065883 4 42390 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.265 40.073 28158000 4215700 3465300 0 2856600 9713500 7907300 3374 1395 3336 14832;14833;14834;14835;14836;14837 9838;9839;9840;9841 9838 4 IIVNDRQLACAR Unmodified 1427.7667 0.76671637 1647 Q9Y3I0 C22orf28 tRNA-splicing ligase RtcB homolog yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 94.599 88.607 3 0.023819 1 60571 20150910_Q1_SA_NiHu_Masterprac_group10_C 50.484 32.147 5628700 2226700 3402000 0 0 0 0 3375 1647 3337 14838;14839 9842 9842 1 IKATVEELKEK Unmodified 1286.7446 0.74456717 766 O95232;B4DJ96;H0YA81 LUC7L3 Luc7-like protein 3 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 2 2 2 2 67.973 60.381 2;3 8.0752E-127 6 43629 20150910_Q1_SA_NiHu_Masterprac_group10_C 161.93 77.109 49461000 4348700 6444200 10058000 5506500 11455000 11648000 3376 766 3338 14840;14841;14842;14843;14844;14845;14846;14847;14848;14849;14850 9843;9844;9845;9846;9847;9848 9848 6 IKEKGSFSDTGLGDGK Unmodified 1637.8261 0.82606496 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 2 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 71.388 63.925 3 4.6339E-05 4 50346 20150910_Q1_SA_NiHu_Masterprac_group15_C 88.951 61.275 7480600 1503800 679560 874920 1144700 1731000 1546700 3377 1639 3339 14851;14852;14853;14854;14855;14856;14857 9849;9850;9851;9852 9851 4 IKEVEEKQPEMK Unmodified 1486.7701 0.77012999 1608 Q9ULL5-3;Q9ULL5-2;A6NFN6;Q9ULL5 PRR12 Proline-rich protein 12 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 54.283 48.266 3 0.0056087 2 33849 20150910_Q1_SA_NiHu_Masterprac_group13_B 78.964 58.685 7200000 0 942190 1390500 979520 2457300 1430500 3378 1608 3340 14858;14859;14860;14861;14862 9853;9854 9853 2 IKEVEEKQPEVK Unmodified 1454.7981 0.7980593 253 C9JJ88;Q2KHR3-2;Q2KHR3;H0YCQ7 QSER1 Glutamine and serine-rich protein 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 46.799 45.845 3 0.021914 1 32844 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.162 28.546 1087500 0 0 0 0 0 1087500 3379 253 3341 14863 9855 9855 1 IKFSDDRVCK Unmodified 1266.6391 0.63905624 186 B7Z500;Q9Y383-2;Q9Y383;B7Z4Q3;C9JWT3 LUC7L2;C7orf55 Putative RNA-binding protein Luc7-like 2;UPF0562 protein C7orf55 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 67.989 60.778 3 0.0078591 2 42639 20150910_Q1_SA_NiHu_Masterprac_group13_B 101.38 46.841 23628000 2107100 3765700 3259300 2386600 3756800 8352700 3380 186 3342 14864;14865;14866;14867;14868;14869 9856;9857 9856 2 IKGEHPGLSIGDVAK Unmodified 1519.8358 0.83584179 813 Q5T7C4;Q5T7C6;P09429;B2RPK0 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 99.329 91.608 3 0.0013599 2 62626 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.045 50.713 6933200 0 1108000 1061700 956660 1388400 2418500 3381 813 3343 14870;14871;14872;14873;14874 9858;9859 9858 2 IKKLPEYNPR Unmodified 1256.7241 0.7241065 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 67.664 60.858 3 1.2028E-05 7 42963 20150910_Q1_SA_NiHu_Masterprac_group15_B 112.71 94.18 42396000 9794100 7748300 4571500 3977200 4963400 11341000 3382 1575 3344 14875;14876;14877;14878;14879;14880;14881;14882 9860;9861;9862;9863;9864;9865;9866 9862 7 IKLEGGIKGIGK Unmodified 1211.7602 0.76015765 1061 Q12830-4;Q12830-2;Q12830 BPTF Nucleosome-remodeling factor subunit BPTF yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 99.834 92.114 3 0.034254 1 62941 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.172 5.4468 4455100 0 656930 767360 373620 960670 1696500 3383 1061 3345 14883;14884;14885;14886;14887 9867 9867 1 IKMIDMPVER Unmodified 1230.6464 0.6464498 631 H3BV80;H3BMM9;H3BTC0;Q15287;H3BR57;H3BPG5;H3BMS0;Q15287-3;Q15287-2 RNPS1 RNA-binding protein with serine-rich domain 1 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 131.11 113.97 3 0.0087226 2 79971 20150910_Q1_SA_NiHu_Masterprac_group15_C 81.625 48.894 14741000 4790900 0 1663800 0 8286700 0 3384 631 3346 14888;14889;14890 9868;9869 9868 2 IKPAATSHVEGSGGVSAK Unmodified 1694.8951 0.89514758 123 B4DSM5;G3XAG1;Q96ME7;Q86XK6 ZNF512 Zinc finger protein 512 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 2 2 2 2 51.762 45.54 3;4 0.0083934 2 32641 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.794 26.166 6445000 424160 533770 1136800 531530 1721500 2097200 3385 123 3347 14891;14892;14893;14894;14895;14896;14897;14898;14899;14900 9870;9871 9870 2 IKPAATSHVEGSGGVSAKGK Unmodified 1880.0116 0.011574324 123 B4DSM5;G3XAG1;Q96ME7;Q86XK6 ZNF512 Zinc finger protein 512 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 44.328 39.039 4 0.0053834 1 27642 20150910_Q1_SA_NiHu_Masterprac_group10_B 44.577 32.823 10890000 1424100 1042500 2600900 1370700 1970300 2481200 3386 123 3348 14901;14902;14903;14904;14905;14906 9872 9872 1 IKQEITEGELK Unmodified 1286.7082 0.70818166 1357 Q92766-3;Q92766;Q92766-2;C9JU34 RREB1 Ras-responsive element-binding protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 81.532 73.035 3 0.0016684 1 50619 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.913 45.26 4928700 0 0 1442900 695030 988410 1802300 3387 1357 3349 14907;14908;14909;14910 9873 9873 1 IKQYQAGQTVTCFLK Unmodified 1783.9291 0.92909025 1112 Q14690 PDCD11 Protein RRP5 homolog yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 131.28 131.28 3 0.0032001 1 84253 20150910_Q1_SA_NiHu_Masterprac_group13_B 57.53 41.431 3847900 0 0 0 3847900 0 0 3388 1112 3350 14911 9874 9874 1 IKTFSEVLAEK Unmodified 1263.7075 0.70745338 97 B4DLG2;O75152;E9PQ61;E9PBY7 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 131.24 113.24 3 0.031008 1 81949 20150910_Q1_SA_NiHu_Masterprac_group13_C 76.326 34.242 0 0 0 0 0 0 0 3389 97 3351 14912 9875 9875 1 IKVAEDEAEAAAAAK Unmodified 1485.7675 0.76748745 163 F5H867;F5H0E2;H0YFS2;B4E2Z3;P08195-2;P08195-3;F5GZS6;P08195;P08195-4 SLC3A2 4F2 cell-surface antigen heavy chain yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 91.863 84.418 3 0.0023078 2 57836 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.674 26.712 6359500 683570 1811300 0 0 815700 3048900 3390 163 3352 14913;14914;14915;14916 9876;9877 9876 2 IKVKVEEEEEEK Unmodified 1487.7719 0.77190413 1640 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1 60.337 52.652 3 1.1471E-117 5 42954 20150910_Q1_SA_NiHu_Masterprac_group15_C 159.44 159.44 34872000 7908300 2857700 3705300 7410700 7437200 5552800 3391 1640 3353 14917;14918;14919;14920;14921;14922;14923 9878;9879;9880;9881;9882 9880 5 ILAAALTECHRK Unmodified 1381.75 0.75000367 921 P46060 RANGAP1 Ran GTPase-activating protein 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 81.843 74.289 2;3 8.004E-80 8 56826 20150910_Q1_SA_NiHu_Masterprac_group15_C 146.16 85.908 107130000 14392000 12455000 18085000 8372300 30772000 23049000 3392 921 3354 14924;14925;14926;14927;14928;14929;14930;14931;14932;14933;14934;14935 9883;9884;9885;9886;9887;9888;9889;9890 9886 8 ILAAIIMK Unmodified 871.5565 0.55649581 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 133.52 115.68 2 0.0086462 1 82597 20150910_Q1_SA_NiHu_Masterprac_group15_C 102.71 79.677 133040000 0 0 0 0 133040000 0 3393 352;968 3355 14936 9891 9891 1 ILAAIIMKK Unmodified 999.65146 0.65145883 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 125.54 115.24 2 5.4758E-11 2 75604 20150910_Q1_SA_NiHu_Masterprac_group10_B 120.46 115.55 32889000 0 1714800 21319000 0 576980 9277600 3394 352;968 3356 14937;14938;14939;14940 9892;9893 9893 2 ILADLNQQAPAPAPAERR Unmodified 1930.0385 0.038457777 1641 Q9Y2Y9 KLF13 Krueppel-like factor 13 yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 114.04 104.93 3 0.0018818 3 74453 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.265 31.694 20274000 1216600 4465200 3108200 616480 1921000 8946500 3395 1641 3357 14941;14942;14943;14944;14945;14946 9894;9895;9896 9896 3 ILADQQDKYMK Unmodified 1351.6806 0.6805867 1629 Q9Y265;H7C4G5 RUVBL1 RuvB-like 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 3 2 81.508 73.899 2;3 2.1918E-70 13 51162 20150910_Q1_SA_NiHu_Masterprac_group15_B 148.32 106.29 46705000 12356000 3877100 7727900 4765100 8983300 8995400 3396 1629 3358 14947;14948;14949;14950;14951;14952;14953;14954;14955;14956;14957;14958;14959;14960 9897;9898;9899;9900;9901;9902;9903;9904;9905;9906;9907;9908;9909 9900 13 ILAFPCNQFGKQEPGSNEEIK Unmodified 2405.1685 0.16854525 902 P36969-2;P36969 GPX4 Phospholipid hydroperoxide glutathione peroxidase, mitochondrial yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 132.83 132.83 3 0.016304 1 85853 20150910_Q1_SA_NiHu_Masterprac_group13_B 37.925 13.2 5897000 0 0 0 5897000 0 0 3397 902 3359 14961 9910 9910 1 ILAGLGFDPEMQNRPTQK Unmodified 2014.0306 0.030595207 1321;411 E9PC67;F8VQZ0;Q8NE71;Q8NE71-2;H0YGW7 ABCF1 ATP-binding cassette sub-family F member 1 no no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 133.27 115.43 3 0.024377 1 82308 20150910_Q1_SA_NiHu_Masterprac_group15_C 71.08 49.833 8568800 0 0 0 0 8568800 0 3398 411;1321 3360 14962 9911 9911 0 ILAQDVAQLKEK Unmodified 1354.782 0.78201531 768 O95239;O95239-2;F5H4Q9 KIF4A Chromosome-associated kinesin KIF4A yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 109.22 99.591 2;3 2.2871E-27 9 71607 20150910_Q1_SA_NiHu_Masterprac_group15_C 124.39 92.788 61561000 6079600 10400000 9225400 1718800 10227000 23911000 3399 768 3361 14963;14964;14965;14966;14967;14968;14969;14970;14971;14972;14973 9912;9913;9914;9915;9916;9917;9918;9919;9920 9917 9 ILAQITGTEHLK Unmodified 1322.7558 0.75580056 405 H0Y8Y3;F5H7Y0;E9PBF5;Q96HC4-4;Q96HC4;D6RB78;H0YBI4;Q96HC4-3;F5H0X8;Q96HC4-2;D3YTJ1 PDLIM5 PDZ and LIM domain protein 5 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 119.65 105.06 3 0.0015045 1 70485 20150910_Q1_SA_NiHu_Masterprac_group10_C 80.17 41.365 604070 604070 0 0 0 0 0 3400 405 3362 14974 9921 9921 1 ILATAGWDHRIR Unmodified 1407.7735 0.7735163 1467 Q9BYB4 GNB1L Guanine nucleotide-binding protein subunit beta-like protein 1 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 111.14 101.52 3 0.0030822 3 69180 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.2 48.881 8441100 0 0 1235900 651160 936320 5617800 3401 1467 3363 14975;14976;14977;14978 9922;9923;9924 9924 3 ILCEQCMTSNQK Unmodified 1510.6578 0.65781912 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 79.235 71.616 2 1.0436E-63 10 49517 20150910_Q1_SA_NiHu_Masterprac_group15_B 138.2 127.97 163460000 5096100 26170000 66361000 2588100 3671800 59571000 3402 1344 3364 14979;14980;14981;14982;14983;14984;14985 9925;9926;9927;9928;9929;9930;9931;9932;9933;9934 9930 10 ILCEQCMTSNQKK Unmodified 1638.7528 0.75278214 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 64.865 57.906 2;3 2.8129E-46 6 41048 20150910_Q1_SA_NiHu_Masterprac_group15_B 129.54 108.75 68514000 1790100 7999000 25656000 838610 2302800 29928000 3403 1344 3365 14986;14987;14988;14989;14990;14991;14992;14993;14994;14995 9935;9936;9937;9938;9939;9940 9938 6 ILCKSPQSDPADTPTNTK Unmodified 1971.9572 0.95715549 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 2 69.44 62.995 2;3 0.0015913 7 43930 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.09 60.09 36822000 3534900 5937800 5741400 2491300 5823200 13293000 3404 919;920 3366 14996;14997;14998;14999;15000;15001;15002 9941;9942;9943;9944;9945;9946;9947 9943 7 ILDDSDSNLSVVK Unmodified 1403.7144 0.71438925 1251 Q7Z3J3;B4DZH4 RGPD4 RanBP2-like and GRIP domain-containing protein 4 no no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 115.83 108.06 2 5.3906E-09 3 71131 20150910_Q1_SA_NiHu_Masterprac_group10_B 101.43 70.282 8152800 1551600 2735100 1028600 853480 0 1984100 3405 1251 3367 15003;15004;15005;15006;15007 9948;9949;9950 9950 3 ILDDTEDTVVSQRK Unmodified 1617.821 0.82097959 3 Q5TCT4;P42696-2;A2A2V2;P42696 RBM34 RNA-binding protein 34 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 97.327 86.061 3 0.00057258 4 59180 20150910_Q1_SA_NiHu_Masterprac_group10_C 74.537 60.596 4047000 1145100 0 733940 0 1529000 638880 3406 3 3368 15008;15009;15010;15011 9951;9952;9953;9954 9954 4 ILDEIEEHNIK Unmodified 1351.6983 0.69834526 172 C9J2Q4;H7C2Y0;B5MCX3;Q15019;Q15019-2 SEPT2 Septin-2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 106.96 103.5 3 0.033726 1 70774 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.188 22.208 1511100 0 0 0 0 0 1511100 3407 172 3369 15012 9955 9955 1 ILDILGETCK Unmodified 1160.6111 0.61111015 1097;1137 Q14151;A8MXT5;C9JPX0;Q15424;F5H1L1;F5H0H3;F5GZU3;B7Z2F6 SAFB2;SAFB Scaffold attachment factor B2;Scaffold attachment factor B1 no no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 133.64 124.72 2 3.041E-09 2 82594 20150910_Q1_SA_NiHu_Masterprac_group15_C 117.02 67.604 308460000 0 0 0 40214000 268240000 0 3408 1097;1137 3370 15013;15014 9956;9957 9957 2 ILDLLNEGSAR Unmodified 1199.651 0.65100113 1115 Q14807;B7Z265;H3BRB3 KIF22 Kinesin-like protein KIF22 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 133.5 132.9 2 0.0023184 1 86548 20150910_Q1_SA_NiHu_Masterprac_group10_B 95.477 40.393 0 0 0 0 0 0 0 3409 1115 3371 15015 9958 9958 1 ILDVMYSR Unmodified 995.511 0.51100218 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 121.65 118.97 2 0.014419 1 80543 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.819 61.565 3300400 0 590390 0 0 0 2710000 3410 1012 3372 15016;15017 9959 9959 1 ILDVMYSRLPK Unmodified 1333.7428 0.74279303 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 1 132.84 125.55 2;3 3.4056E-12 4 85818 20150910_Q1_SA_NiHu_Masterprac_group13_B 113.38 73.594 157110000 0 57142000 37271000 44162000 18533000 0 3411 1012 3373 15018;15019;15020;15021;15022 9960;9961;9962;9963 9961 4 ILDVMYSRLPKDDVHAK Unmodified 1999.0561 0.056081676 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 1 1 130.97 117.38 3;4;5 0.00014128 4 76912 20150910_Q1_SA_NiHu_Masterprac_group10_C 86.214 73.489 35036000 21584000 0 6970500 0 0 6481400 3412 1012 3374 15023;15024;15025;15026 9964;9965;9966;9967 9966 4 ILEAELAVEQK Unmodified 1241.6867 0.68671794 533 F8VZR5;F8VNP5;P28702;Q5STQ1;E9PK95;B7Z3E4 RXRB Retinoic acid receptor RXR-beta yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 126.61 121.74 2 0.025814 1 82494 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.494 56.603 703070 0 0 0 0 0 703070 3413 533 3375 15027 9968 9968 0 ILEASQLK Unmodified 900.52803 0.52803245 690 O00411 POLRMT DNA-directed RNA polymerase, mitochondrial yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 88.344 80.665 2 4.9559E-09 1 55374 20150910_Q1_SA_NiHu_Masterprac_group15_B 120.46 13.162 7214100 770190 965120 1058200 586030 1247600 2587000 3414 690 3376 15028;15029;15030;15031;15032;15033 9969 9969 1 ILEDVVGVPEK Unmodified 1196.6653 0.66525421 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 130.67 130.07 2 0.017295 1 83510 20150910_Q1_SA_NiHu_Masterprac_group10_B 72.731 40.513 0 0 0 0 0 0 0 3415 1611 3377 15034 9970 9970 1 ILEDVVGVPEKK Unmodified 1324.7602 0.76021723 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 3 3 119.46 109.85 2;3 1.1092E-17 12 75184 20150910_Q1_SA_NiHu_Masterprac_group15_B 116.71 87.498 319840000 41647000 56443000 53662000 13937000 19874000 134270000 3416 1611 3378 15035;15036;15037;15038;15039;15040;15041;15042;15043;15044;15045;15046;15047;15048 9971;9972;9973;9974;9975;9976;9977;9978;9979;9980;9981;9982 9977 11 ILEHMPVSNQKPDTDEAEDPEK Unmodified 2521.1642 0.16424773 1452 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 96.538 94.355 4 1.0131E-05 2 63173 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.139 50.214 2557700 0 1302800 0 0 0 1254800 3417 1452 3379 15049;15050 9983;9984 9984 2 ILELSGSSSEDSEK Unmodified 1479.694 0.69404774 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 95.728 87.799 2 6.6201E-104 2 60081 20150910_Q1_SA_NiHu_Masterprac_group15_B 145.52 110 35713000 563640 8566400 2256800 1793700 7453700 15078000 3418 1012 3380 15051;15052;15053;15054;15055;15056 9985;9986 9985 1 ILEMNDKYVK Unmodified 1251.6533 0.65330932 1096 Q14149 MORC3 MORC family CW-type zinc finger protein 3 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 101.12 93.971 3 0.024349 1 64131 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.398 42.339 4952200 0 821160 641510 0 0 3489500 3419 1096 3381 15057;15058;15059 9987 9987 1 ILENAASAQK Unmodified 1043.5611 0.56112349 1655 Q9Y5N6;H3BT22 ORC6 Origin recognition complex subunit 6 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 49.887 46.41 2 0.0029051 2 33366 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.692 16.176 7433500 1778300 1540700 0 0 0 4114500 3420 1655 3382 15060;15061;15062 9988;9989 9988 2 ILEQQQAAK Unmodified 1027.5662 0.56620887 1310 Q8N9M1-3;Q8N9M1-2;Q8N9M1 C19orf47 Uncharacterized protein C19orf47 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 46.411 35.834 2 0.034299 1 29222 20150910_Q1_SA_NiHu_Masterprac_group13_C 62.582 16.453 429640 0 0 429640 0 0 0 3421 1310 3383 15063 9990 9990 1 ILEREGEENEALHK Unmodified 1665.8322 0.83221298 1264 Q86UV5;Q86UV5-2;B7ZKS7;Q86UV5-5 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 67.135 59.991 3 0.00033359 3 42144 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.282 57.946 24995000 1128200 2146600 9859400 1988000 4809000 5064100 3422 1264 3384 15064;15065;15066;15067;15068;15069 9991;9992;9993 9992 3 ILESHQFSPHNHAK Unmodified 1643.8168 0.81683768 1525 Q9NPC8 SIX2 Homeobox protein SIX2 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 51.698 47.562 3;4 0.00079462 7 33662 20150910_Q1_SA_NiHu_Masterprac_group15_B 85.672 85.672 49561000 0 7824800 14221000 4047900 0 23468000 3423 1525 3385 15070;15071;15072;15073;15074;15075;15076;15077 9994;9995;9996;9997;9998;9999;10000 9998 7 ILESHQFSPHNHPK Unmodified 1669.8325 0.83248775 1139 Q15475 SIX1 Homeobox protein SIX1 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 57.921 52.366 3;4 3.3449E-05 6 42755 20150910_Q1_SA_NiHu_Masterprac_group15_C 92.781 92.781 25053000 0 3268400 2935500 4075000 8160300 6613700 3424 1139 3386 15078;15079;15080;15081;15082;15083;15084;15085;15086 10001;10002;10003;10004;10005;10006 10006 6 ILESVAEGR Unmodified 972.52401 0.52400971 328 D6RGI7;Q9UJV9;H0YA06 DDX41 Probable ATP-dependent RNA helicase DDX41 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 82.778 73.554 2 0.037456 2 57587 20150910_Q1_SA_NiHu_Masterprac_group13_C 61.161 12.367 10083000 0 1746800 2055100 0 2339900 3941100 3425 328 3387 15087;15088;15089;15090 10007;10008 10007 2 ILGPIPQHMIQK Unmodified 1373.7853 0.78532654 1515 Q9HAZ1 CLK4 Dual specificity protein kinase CLK4 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 127.52 125.03 3 0.0030287 2 84678 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.786 68.786 5827000 0 0 0 716660 0 5110300 3426 1515 3388 15091;15092 10009;10010 10009 2 ILGPIPSHMIHR Unmodified 1369.7653 0.7652598 944 P49761-1;P49761;P49761-3;G5E959;H3BRW2;H3BNQ5;H3BRE4 CLK3 Dual specificity protein kinase CLK3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 115.47 113.19 3 1.9149E-37 1 77143 20150910_Q1_SA_NiHu_Masterprac_group15_B 127.51 127.51 8939100 0 0 0 1130500 0 7808600 3427 944 3389 15093;15094 10011 10011 1 ILGPQGNTIK Unmodified 1039.6026 0.60259438 1045 Q07666;Q07666-2;E7ET98 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 86.232 78.455 2 0.0030827 7 53711 20150910_Q1_SA_NiHu_Masterprac_group13_B 92.239 25.888 401240000 78630000 51872000 65278000 40290000 51182000 113990000 3428 1045 3390 15095;15096;15097;15098;15099;15100;15101 10012;10013;10014;10015;10016;10017;10018 10012 7 ILGRYYETGSIRPR Unmodified 1679.9107 0.91073807 877;878 P26367;G3V3Q9;P26367-2 PAX6 Paired box protein Pax-6 no no 0 0 2 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 106.57 96.113 4 0.0058928 2 64489 20150910_Q1_SA_NiHu_Masterprac_group10_C 54.023 39.514 78233000 1403400 0 0 0 14704000 62126000 3429 877;878 3391 15102;15103;15104 10019;10020 10020 2 ILGSLYAASEDQEK Unmodified 1522.7515 0.75150304 1229 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 121.36 118.63 2 0.0011066 1 80544 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.133 54.009 4060300 0 2793400 0 0 0 1267000 3430 1229 3392 15105;15106 10021 10021 1 ILGVDKNASEDEIKK Unmodified 1657.8887 0.88866522 1430 Q99615;Q7Z784 DNAJC7 DnaJ homolog subfamily C member 7 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 91.37 80.216 3 0.0077211 1 55471 20150910_Q1_SA_NiHu_Masterprac_group10_C 59.225 43.126 3226700 1156500 626320 755850 0 688090 0 3431 1430 3393 15107;15108;15109;15110 10022 10022 1 ILHVNGFNGDEK Unmodified 1341.6677 0.66771383 1002 P63092-3;H0Y7F4 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms short yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 1 96.373 90.506 3 0.0015134 2 61993 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.565 60.527 14371000 0 5804900 3035100 0 0 5531100 3432 1002 3394 15111;15112;15113;15114 10023;10024 10023 2 ILHVNGFNGDSEK Unmodified 1428.6997 0.69974224 1001 P63092-2;Q5JWF2-2 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 96.373 90.087 3 0.0011118 7 61779 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.073 50.543 16266000 1137700 2466900 4488600 1631100 0 6541600 3433 1001 3395 15115;15116;15117;15118;15119 10025;10026;10027;10028;10029;10030;10031 10027 7 ILHVNGFNGEGGEEDPQAAR Unmodified 2108.9875 0.98754442 1000 P63092;Q5JWD1;A6NI00;Q5JWF2;H0Y7E8;Q5JWE9 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 116.85 107.31 3 6.7537E-11 2 73478 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.442 76.051 5432900 603720 1233500 1430100 0 0 2165500 3434 1000 3396 15120;15121;15122;15123 10032;10033 10032 2 ILHVNGFNGEGGEEDPQAARSNSDGEK Unmodified 2826.2805 0.28049155 1000 P63092;Q5JWF2 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 107.66 97.338 4 5.0143E-06 2 66310 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.39 43.004 8759300 0 0 3261000 0 0 5498300 3435 1000 3397 15124;15125 10034;10035 10035 1 ILIANTGMDTDKIK Unmodified 1531.828 0.82797922 1010 P78371-2;P78371;F8VQ14;F5GWF6 CCT2 T-complex protein 1 subunit beta yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 131.2 115.51 3 0.013477 1 76790 20150910_Q1_SA_NiHu_Masterprac_group10_C 48.527 29.704 2437600 2437600 0 0 0 0 0 3436 1010 3398 15126 10036 10036 1 ILIATDVASR Unmodified 1057.6132 0.61315906 1662 Q9Y6V7;Q9BVQ8 DDX49 Probable ATP-dependent RNA helicase DDX49 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 114.21 110.15 2 5.0572E-09 1 75318 20150910_Q1_SA_NiHu_Masterprac_group15_B 115.7 43.469 2758000 0 0 0 0 0 2758000 3437 1662 3399 15127 10037 10037 1 ILIENGVAERQR Unmodified 1396.7787 0.77866126 1477 Q9H0A0;E9PJN6;E9PMU0 NAT10 N-acetyltransferase 10 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 2 1 95.424 82.615 3 0.036448 1 61486 20150910_Q1_SA_NiHu_Masterprac_group15_C 45.764 17.587 4959200 0 0 287970 0 3631900 1039300 3438 1477 3400 15128;15129;15130;15131 10038 10038 1 ILIFSSR Unmodified 834.49634 0.49633839 1337 Q8TDN6 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 132.38 127.42 2 4.5651E-19 1 87322 20150910_Q1_SA_NiHu_Masterprac_group15_B 130.77 39.78 0 0 0 0 0 0 0 3439 1337 3401 15132 10039 10039 1 ILKQVSGGEDEIQQLQK Unmodified 1912.0266 0.026555687 1222 Q6KC79-2;Q6KC79 NIPBL Nipped-B-like protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 121.54 114.52 3 0.0028109 1 78183 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.203 44.04 5698500 1930100 1336200 0 0 0 2432300 3440 1222 3402 15133;15134;15135 10040 10040 1 ILLDPNSEEVSEK Unmodified 1471.7406 0.740604 951 P51531-2;P51531 SMARCA2 Probable global transcription activator SNF2L2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 119.01 113.7 2 2.0063E-15 7 75494 20150910_Q1_SA_NiHu_Masterprac_group10_C 109.44 72.298 25682000 9842600 5976900 0 2628200 0 7234700 3441 951 3403 15136;15137;15138;15139;15140 10041;10042;10043;10044;10045;10046;10047 10047 7 ILLQSKNAGAVIGK Unmodified 1410.8558 0.85584895 984 P61978-3;P61978-2;B4DFF1;P61978;Q5T6W2 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 107.66 101.71 3 0.0012024 1 69609 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.889 42.099 3616800 454370 1177600 0 0 0 1984800 3442 984 3404 15141;15142;15143 10048 10048 1 ILLVDSPGMGNADDEQQEEGTSSKQVVK Unmodified 2973.4237 0.4237099 1602 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 131.97 120.69 3 9.7993E-30 7 86786 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.08 63.017 56162000 9225300 0 21886000 11505000 2590000 10955000 3443 1602 3405 15144;15145;15146;15147;15148;15149 10049;10050;10051;10052;10053;10054;10055 10052 7 ILNDLSSDAPGVPRIEEEK Unmodified 2081.0641 0.064063405 841 P16220-3;P16220-2;P16220;C9J4L5;B7Z7P1;C9JBT4;H7C3I0;E7EWP8;F5H0V3;C9J896 CREB1 Cyclic AMP-responsive element-binding protein 1 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 132.36 132.36 3 0.00055769 1 85375 20150910_Q1_SA_NiHu_Masterprac_group13_B 75.564 50.111 10877000 0 0 0 10877000 0 0 3444 841 3406 15150 10056 10056 1 ILNEMRDQYEK Unmodified 1437.6922 0.69221402 286;304;485 P02533;CON__P02533;CON__Q6IFX2;Q04695;CON__Q04695;F5GWP8 KRT14;KRT17;JUP Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 88.899 81.419 3 0.034675 1 55565 20150910_Q1_SA_NiHu_Masterprac_group13_B 50.194 32.232 4897700 0 664120 1342500 1842600 290070 758350 + 3445 286;304;485 3407 15151;15152;15153;15154;15155 10057 10057 1 ILNFLMHPKPSGKPLPK Unmodified 1916.107 0.10699503 901 P35659;P35659-2;B4DFG0;H0Y8X0 DEK Protein DEK yes no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 130.82 128.34 4 0.00052873 2 85899 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.529 72.395 14440000 0 0 0 4033800 0 10406000 3446 901 3408 15156;15157 10058;10059 10059 2 ILNREVVNYVQK Unmodified 1473.8304 0.83036248 1506 Q9H9A7 RMI1 RecQ-mediated genome instability protein 1 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 110.65 100.36 3 0.0018546 3 72061 20150910_Q1_SA_NiHu_Masterprac_group15_C 81.92 59.844 15738000 1915100 0 3782300 1508500 1819200 6712500 3447 1506 3409 15158;15159;15160;15161;15162 10060;10061;10062 10062 3 ILNTSPDGHPYEK Unmodified 1469.7151 0.71505795 1154 Q16600 ZNF239 Zinc finger protein 239 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 75.399 67.372 2;3 0.0036874 5 47715 20150910_Q1_SA_NiHu_Masterprac_group10_C 62.162 47 15023000 2882300 2089200 2550900 1486000 2682600 3331700 3448 1154 3410 15163;15164;15165;15166;15167;15168;15169;15170;15171 10063;10064;10065;10066;10067 10067 5 ILPAAALASEHSK Unmodified 1306.7245 0.72450043 1255 Q7Z6E9;Q7Z6E9-2;H3BSK8 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 1 2 105.2 97.83 2;3 2.7248E-15 5 65102 20150910_Q1_SA_NiHu_Masterprac_group13_B 107.17 80.017 37562000 4168800 9468600 4110300 4517900 5823400 9472900 3449 1255 3411 15172;15173;15174;15175;15176;15177;15178;15179;15180;15181 10068;10069;10070;10071;10072 10069 5 ILPNGPKAPVTGYVR Unmodified 1580.9039 0.90386178 235 C9K049;C9J8X5;Q9P0W2-3;Q9P0W2;C9JQA7 HMG20B SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 118.58 113.27 3 0.004818 3 77265 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.491 44.894 6500800 1068000 620790 0 787830 0 4024200 3450 235 3412 15182;15183;15184;15185 10073;10074;10075 10073 3 ILQDGGLQVVEK Unmodified 1297.7242 0.72416608 711 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 118.92 117.16 2 0.0068973 1 79584 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.298 25.62 2399700 0 671200 0 299530 0 1429000 3451 711 3413 15186;15187;15188 10076 10076 1 ILQDGGLQVVEKQNLSK Unmodified 1868.0367 0.036726442 711 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 128.83 123.51 3 1.7318E-07 3 77235 20150910_Q1_SA_NiHu_Masterprac_group10_C 89.506 72.582 30379000 6679000 1823500 0 1239000 0 20637000 3452 711 3414 15189;15190;15191;15192 10077;10078;10079 10079 3 ILQNYDNKQVR Unmodified 1389.7365 0.7364621 945;1251 P49792;E9PGT0;P0DJD0;P0DJD1;F8VYC4;Q99666;O14715;E7ES93;B4DTM4;Q7Z3J3 RANBP2;RGPD1;RGPD2;RGPD5;RGPD8;RGPD4 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8;RanBP2-like and GRIP domain-containing protein 4 no no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 62.221 59.211 2 0.013225 1 41972 20150910_Q1_SA_NiHu_Masterprac_group10_B 74.533 6.8293 0 0 0 0 0 0 0 3453 945;1251 3415 15193 10080 10080 1 ILQRSQAQQPQK Unmodified 1423.7896 0.7895603 1167 Q3MHD2;Q3MHD2-2 LSM12 Protein LSM12 homolog yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 37.017 32.139 3 0.0035565 1 25997 20150910_Q1_SA_NiHu_Masterprac_group13_C 69.721 52.509 2140000 347300 0 1487600 305080 0 0 3454 1167 3416 15194;15195;15196 10081 10081 1 ILQSLEK Unmodified 829.49092 0.49091866 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 80.803 69.849 2 0.010533 2 48724 20150910_Q1_SA_NiHu_Masterprac_group10_B 92.47 15.413 8964000 1631400 1609100 3508500 0 2215000 0 3455 531 3417 15197;15198;15199;15200 10082;10083 10083 2 ILQVRAASAPAK Unmodified 1223.735 0.73500553 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 74.439 67.659 2 0.02867 1 48319 20150910_Q1_SA_NiHu_Masterprac_group10_C 58.098 18.518 1972400 654960 351080 0 470930 495390 0 3456 383;1082 3418 15201;15202;15203;15204 10084 10084 1 ILQVSFK Unmodified 833.50109 0.50108942 1146 Q15717 ELAVL1 ELAV-like protein 1 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 124.76 117.95 2 0.019919 2 76974 20150910_Q1_SA_NiHu_Masterprac_group10_C 105.39 34.478 12847000 4711200 0 0 1289500 0 6846100 3457 1146 3419 15205;15206;15207 10085;10086 10086 2 ILQVSFKTNK Unmodified 1176.6867 0.68665836 1146 Q15717 ELAVL1 ELAV-like protein 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 106.4 98.002 2 0.028759 1 64975 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.614 36.859 3737700 283420 1463300 0 0 511250 1479700 3458 1146 3420 15208;15209;15210;15211 10087 10087 1 ILQVSFKTNKSHK Unmodified 1528.8726 0.87256165 1146 Q15717 ELAVL1 ELAV-like protein 1 yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 73.763 66.503 3 0.0063904 2 46351 20150910_Q1_SA_NiHu_Masterprac_group10_B 83.226 50.748 10921000 0 2819400 1737300 682140 1394000 4287700 3459 1146 3421 15212;15213;15214;15215;15216 10088;10089 10089 2 ILQVSNGCVSK Unmodified 1203.6282 0.6281572 877 P26367;E9PKM0 PAX6 Paired box protein Pax-6 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 82.665 76.909 2 3.2932E-06 4 52652 20150910_Q1_SA_NiHu_Masterprac_group13_B 106.67 77.71 31879000 2110200 6566200 0 1939600 4600100 16663000 3460 877 3422 15217;15218;15219;15220;15221 10090;10091;10092;10093 10090 4 ILQYLECPQYLRK Unmodified 1722.9127 0.9127119 1189 Q5T280 C9orf114 Uncharacterized protein C9orf114 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 132.91 131.05 2;3 4.9035E-59 3 85654 20150910_Q1_SA_NiHu_Masterprac_group10_B 131.79 84.173 129770000 0 11402000 0 27945000 0 90425000 3461 1189 3423 15222;15223;15224 10094;10095;10096 10096 3 ILRLSGKPQNAPEGYQNR Unmodified 2040.0865 0.086470602 157 B4E1H5;Q12834 CDC20 Cell division cycle protein 20 homolog yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 92.291 84.479 4 0.00092587 5 57937 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.481 57.653 14875000 1201700 2510700 2542300 1035500 2194800 5389900 3462 157 3424 15225;15226;15227;15228;15229;15230 10097;10098;10099;10100;10101 10099 5 ILRPWQSSETR Unmodified 1371.7259 0.72589741 1141 Q15637-6;Q15637-4;Q15637-3;Q15637-2;Q15637 SF1 Splicing factor 1 no no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 96.895 88.299 3 0.0031156 1 66722 20150910_Q1_SA_NiHu_Masterprac_group13_C 84.507 44.723 3884800 0 0 2311500 1573300 0 0 3463 1141 3425 15231;15232 10102 10102 1 ILRPWQSSETRSITNTTVCTK Unmodified 2477.2697 0.26965628 1141 Q15637-6;Q15637-4;Q15637-3;Q15637-2;Q15637 SF1 Splicing factor 1 no no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 130.54 114.85 4 0.00072871 1 76172 20150910_Q1_SA_NiHu_Masterprac_group10_C 53.536 33.78 9769000 9769000 0 0 0 0 0 3464 1141 3426 15233 10103 10103 1 ILSGVVTK Unmodified 815.51165 0.5116541 989 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 2 82.461 75.772 2 0.015503 2 52304 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.743 19.94 23117000 2603100 2019600 1532300 2463300 6216700 8281700 3465 989 3427 15234;15235;15236;15237;15238;15239;15240 10104;10105 10105 2 ILTAAGSCDVVCVACEK Unmodified 1851.8529 0.85289012 483 F5GYH8;F5GWE4;F5H4M2;P54198 C22orf39;HIRA Protein HIRA yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.46 126.5 2 0.012581 1 86305 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.495 41.997 3078400 0 0 0 0 0 3078400 3466 483 3428 15241 10106 10106 0 ILTGKIVVGHAIHNDFK Unmodified 1861.0574 0.057402305 1509 Q9H9L3 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 122.63 115.07 4 0.0010486 3 80638 20150910_Q1_SA_NiHu_Masterprac_group13_C 73.296 58.416 7688100 0 0 5390100 1586100 0 712020 3467 1509 3429 15242;15243;15244 10107;10108;10109 10109 3 ILTGTDAPK Unmodified 914.5073 0.50729701 952 P51532-5;P51532-2;P51532-3;P51532-4;P51532;Q9HBD4;F5H0X5 SMARCA4 Transcription activator BRG1 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 62.22 55.622 2 0.006833 3 39644 20150910_Q1_SA_NiHu_Masterprac_group10_B 90.15 36.183 9919000 0 1716300 1630800 328310 1323600 4920000 3468 952 3430 15245;15246;15247;15248;15249 10110;10111;10112 10112 3 ILTINEDGSLGLKTPK Unmodified 1697.9564 0.95635086 1626 Q9UQR1;F5H173 ZNF148 Zinc finger protein 148 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 132.73 127.76 3 4.0242E-38 2 87752 20150910_Q1_SA_NiHu_Masterprac_group15_B 118.16 96.066 21728000 0 0 0 0 0 21728000 3469 1626 3431 15250;15251 10113;10114 10113 2 ILTTIEDLDQKK Unmodified 1415.7872 0.78716026 770 O95347-2;O95347 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 119.53 116.8 3 2.5165E-09 3 79477 20150910_Q1_SA_NiHu_Masterprac_group15_C 103.46 58.898 2764900 0 978650 0 0 0 1786200 3470 770 3432 15252;15253;15254 10115;10116;10117 10116 3 ILVENPSAR Unmodified 997.55564 0.55564418 358 O14757-2;F5H7S4;O14757;E7EPP6;E9PPA5 CHEK1 Serine/threonine-protein kinase Chk1 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 82.766 74.269 2 0.006833 3 58074 20150910_Q1_SA_NiHu_Masterprac_group13_C 90.15 27.687 12861000 0 0 1843400 687010 1954800 8375600 3471 358 3433 15255;15256;15257;15258 10118;10119;10120 10119 3 ILVNDGDASK Unmodified 1030.5295 0.52948901 1237 Q6W2J9;Q6W2J9-4;Q6W2J9-2;H7BYY2;Q6W2J9-3 BCOR BCL-6 corepressor yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 57.096 54.286 2 0.02 1 38844 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.624 21.026 786960 0 786960 0 0 0 0 3472 1237 3434 15259 10121 10121 1 ILYNSLNDSFKR Unmodified 1468.7674 0.76742787 1302 Q8N5C6;Q8N5C6-2;B7Z6X7 SRBD1 S1 RNA-binding domain-containing protein 1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 127.12 116.9 3 0.0028115 2 80540 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.944 43.819 4918300 2051700 0 0 0 0 2866600 3473 1302 3435 15260;15261 10122;10123 10122 2 ILYSQCGDVMR Unmodified 1340.6217 0.62169161 552 F8W1R7;P60660-2;P60660;G3V1V0;F8VZV5;G8JLA2;B7Z6Z4;F8VPF3;F8W1I5;P14649 MYL6;MYL6B Myosin light polypeptide 6;Myosin light chain 6B yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 117.41 103.43 2 0.0069874 1 69229 20150910_Q1_SA_NiHu_Masterprac_group10_C 69.261 46.234 1024700 1024700 0 0 0 0 0 3474 552 3436 15262 10124 10124 1 IMASSPDMDLATVSALRK Unmodified 1904.97 0.96996879 890 P32322;E2QRB3;A6NFM2;B4DMU0 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial;Pyrroline-5-carboxylate reductase yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 133.61 128.64 3 0.023546 1 88672 20150910_Q1_SA_NiHu_Masterprac_group15_B 33.682 0.00071335 38479000 0 0 0 0 0 38479000 3475 890 3437 15263 10125 10125 1 IMCSSICK Unmodified 997.43949 0.43949349 1223 Q6MZP7-3;Q6MZP7;Q6MZP7-4;Q6MZP7-2 LIN54 Protein lin-54 homolog yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 63.773 58.947 2 0.026998 1 46793 20150910_Q1_SA_NiHu_Masterprac_group15_C 73.665 38.309 2473100 0 490240 0 327850 554520 1100500 3476 1223 3438 15264;15265;15266;15267 10126 10126 1 IMDSAQYAEFCESR Unmodified 1705.7076 0.70760609 742 O75486-2;O75486-3;O75486 SUPT3H Transcription initiation protein SPT3 homolog yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 127.13 124.35 2 0.0026796 1 84136 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.69 57.149 1595900 0 309010 0 0 0 1286900 3477 742 3439 15268;15269 10127 10127 1 IMGGASANEMLLSGRK Unmodified 1633.828 0.827996 1628 Q9Y232-2;Q9Y232;Q9Y232-3;Q9Y232-4 CDYL Chromodomain Y-like protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 119.41 116.68 3 0.00010463 3 79531 20150910_Q1_SA_NiHu_Masterprac_group15_B 85.469 62.918 1577700 0 475970 0 0 0 1101800 3478 1628 3440 15270;15271 10128;10129;10130 10128 3 IMGGSGTETTLEK Unmodified 1322.6388 0.63878147 1265 Q86V48-2;Q86V48-3;Q86V48 LUZP1 Leucine zipper protein 1 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 83.743 76.343 2 2.7789E-09 4 52640 20150910_Q1_SA_NiHu_Masterprac_group15_B 104.17 84.497 5574400 0 1133400 908120 405800 1321700 1805400 3479 1265 3441 15272;15273;15274;15275;15276 10131;10132;10133;10134 10132 4 IMGPNYTPGK Unmodified 1076.5325 0.5324659 833 P13639;F5H370 EEF2 Elongation factor 2 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 92.719 81.122 2 0.030524 1 60622 20150910_Q1_SA_NiHu_Masterprac_group15_C 57.149 37.795 2399100 0 0 299170 0 764690 1335300 3480 833 3442 15277;15278;15279 10135 10135 1 IMIMTDQDQDGSHIK Unmodified 1730.7968 0.79675545 1035;655 P11388;H7BXX8;P11388-2;P11388-3;P11388-4;C9J5P2;H7BXH5;Q02880-2;Q02880;E9PCY5 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta;DNA topoisomerase 2 no no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 108.5 99.668 3 6.2861E-87 3 67870 20150910_Q1_SA_NiHu_Masterprac_group15_B 140.31 109.82 34213000 1005900 1015800 2893600 971850 4429700 23896000 3481 655;1035 3443 15280;15281;15282;15283;15284;15285 10136;10137;10138 10137 3 IMLDSSNLQHQK Unmodified 1412.7082 0.70819844 577 G3V1J5;Q9Y2L1-2;Q9Y2L1 DIS3 Exosome complex exonuclease RRP44 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 89.174 83.76 3 0.00011349 1 57439 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.734 72.285 2536500 590360 0 0 0 0 1946200 3482 577 3444 15286;15287 10139 10139 1 IMLQNLQER Unmodified 1143.607 0.60702783 1280 Q8IWC1-2;Q8IWC1;H7BY77;Q8IWC1-3 MAP7D3 MAP7 domain-containing protein 3 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 119.24 108.74 2 0.036082 1 76908 20150910_Q1_SA_NiHu_Masterprac_group15_C 61.78 22.905 5359300 0 0 0 0 943980 4415400 3483 1280 3445 15288;15289 10140 10140 1 IMSCGMDHSLK Unmodified 1277.5566 0.55664852 745 O75530-3;O75530;O75530-2;E9PR98 EED Polycomb protein EED yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 2 77.723 71.092 2;3 0.00016604 3 49369 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.343 56.625 6626300 676920 946840 852790 367740 803550 2978400 3484 745 3446 15290;15291;15292;15293;15294;15295;15296 10141;10142;10143 10142 3 IMSLLSR Unmodified 818.46841 0.46840908 1351 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 122.82 116.95 2 6.9359E-08 4 76712 20150910_Q1_SA_NiHu_Masterprac_group10_C 117.93 20.863 11913000 0 1928700 4244600 993840 0 4745400 3485 1351 3447 15297;15298;15299;15300;15301 10144;10145;10146;10147 10147 4 INALMHALTDLRK Oxidation (M) 1510.829 0.82898227 1107 Q14527;Q14527-2;H7C5K0 HLTF Helicase-like transcription factor yes no 0 1 1 By matching By matching By matching By matching By matching By MS/MS 1 130.54 125.57 3 0.0042701 1 85334 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.809 43.231 11355000 0 0 0 0 0 11355000 3486 1107 3448 15302 10148 10148 133 1 INALMHALTDLRK Unmodified 1494.8341 0.83406765 1107 Q14527;Q14527-2;H7C5K0 HLTF Helicase-like transcription factor yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 133.57 128.61 3 0.0039151 1 88728 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.098 36.324 138450000 0 0 0 0 0 138450000 3487 1107 3448 15303 10149 10149 1 INDALSCEYECR Unmodified 1528.6286 0.62862749 46 Q52LJ0;A8MUW5 FAM98B Protein FAM98B yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 101.59 94.417 2 0.0018212 2 64498 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.202 78.757 4270200 0 878220 0 0 1298000 2093900 3488 46 3449 15304;15305;15306 10150;10151 10150 2 INEIRQMSGAQIK Unmodified 1486.7926 0.79259677 548 F8VZX2;Q15366-4;Q15366-5;Q15366-3;Q15366;Q15366-2;H3BRU6;G3V0E8;B4DXP5;B4DRD7;F8VRG9;F8VWQ4;P57721-2;P57721-3;P57721-5;E9PFP8;P57721-4;P57721;H9KV40;F8VRH0;H3BSS4 PCBP2;PCBP3 Poly(rC)-binding protein 2;Poly(rC)-binding protein 3 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 96.494 88.532 3 1.1517E-34 7 66819 20150910_Q1_SA_NiHu_Masterprac_group13_C 122.34 77.732 125590000 7020700 21107000 9026600 8545800 29360000 50531000 3489 548 3450 15307;15308;15309;15310;15311;15312 10152;10153;10154;10155;10156;10157;10158 10153 7 INFVGGNK Unmodified 847.4552 0.45520186 1403 Q96KR1;B5MEH6 ZFR Zinc finger RNA-binding protein yes no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 79.765 72.253 2 0.017128 2 50306 20150910_Q1_SA_NiHu_Masterprac_group13_B 82.241 30.905 43365000 4616200 8081400 6948800 3048700 6372000 14298000 3490 1403 3451 15313;15314;15315;15316;15317;15318 10159;10160 10159 2 INFVGGNKLQSTGNK Unmodified 1575.8369 0.83690442 1403 Q96KR1;B5MEH6 ZFR Zinc finger RNA-binding protein yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 100.33 90.571 3 0.010857 1 61147 20150910_Q1_SA_NiHu_Masterprac_group10_B 46.797 19.125 6347200 1630100 3808200 908970 0 0 0 3491 1403 3452 15319;15320;15321 10161 10161 1 INGRVAASTFSSDSK Unmodified 1538.7689 0.76888444 1654 Q9Y5J1;B2RAX6 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 77.321 71.555 3 0.0013869 1 49735 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.978 50.565 3786900 0 0 0 223170 1225600 2338100 3492 1654 3453 15322;15323;15324 10162 10162 1 INHTASENEEFNKGESTSQK Unmodified 2249.0196 0.019632408 361 Q9GZR1-2;Q9GZR1;E7EQN6 SENP6 Sentrin-specific protease 6 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 51.583 45.592 4 2.146E-06 5 32629 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.107 68.944 11704000 683810 3299900 3844800 557690 770270 2547900 3493 361 3454 15325;15326;15327;15328;15329;15330 10163;10164;10165;10166;10167 10166 5 INISEGNCPER Unmodified 1287.5877 0.58774895 1135;548 F8VZX2;Q15366-4;Q15366-5;Q15366-3;Q15366;Q15366-2;H3BRU6;G3V0E8;B4DXP5;B4DRD7;F8W0G4;B4DLC0;F8VXH9;F8W1G6;P57721-2;P57721-3;P57721-5;E9PFP8;P57721-4;P57721;H9KV40;F8VTZ0;Q15365 PCBP2;PCBP3;PCBP1 Poly(rC)-binding protein 2;Poly(rC)-binding protein 3;Poly(rC)-binding protein 1 no no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 76.026 69.902 2 0.0013333 6 50160 20150910_Q1_SA_NiHu_Masterprac_group10_C 92.112 73.474 37099000 3197400 10255000 0 1763800 5711600 16171000 3494 548;1135 3455 15331;15332;15333;15334;15335;15336 10168;10169;10170;10171;10172;10173 10173 6 INKQLDECASAITK Unmodified 1589.8083 0.80830641 419 E9PD53;Q9NTJ3;Q9NTJ3-2;F5H0U7 SMC4 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 4 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 88.711 85.377 3 0.040306 1 58491 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.427 12.895 3456500 633850 1272600 0 427870 0 1122200 3495 419 3456 15337;15338;15339;15340 10174 10174 1 INPMQGSGRPEEREK Unmodified 1726.8421 0.84206616 670 H7C3A3 TTC27 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 41.356 40.502 4 0.0023656 1 28779 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.185 33.273 1741100 0 0 0 0 0 1741100 3496 670 3457 15341 10175 10175 1 INQMATAPDSQRLK Unmodified 1571.809 0.80897511 1625 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 2 1 1 1 1 80.747 72.325 3 0.0013657 2 55475 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.92 24.64 21908000 4966700 0 2968600 2250200 3555100 8167200 3497 1625 3458 15342;15343;15344;15345;15346;15347 10176;10177 10176 2 INQPELETR Unmodified 1098.5669 0.56693715 1180 Q5FWF5;Q5FWF5-2 ESCO1 N-acetyltransferase ESCO1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 79.656 72.128 2 0.039666 1 56854 20150910_Q1_SA_NiHu_Masterprac_group13_C 60.167 28.133 12087000 674030 1762000 2508600 891220 2528400 3722600 3498 1180 3459 15348;15349;15350;15351;15352;15353 10178 10178 1 INQQENSLTLEK Unmodified 1415.7256 0.72562264 936 P49454 CENPF Centromere protein F yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 89.567 82.797 2 0.0024886 3 56679 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.392 28.739 1615100 0 601590 0 0 208760 804790 3499 936 3460 15354;15355;15356 10179;10180;10181 10179 2 INQQENSLTLEKLK Unmodified 1656.9046 0.90464964 936 P49454 CENPF Centromere protein F yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 106.27 103.73 3 0.021066 1 68496 20150910_Q1_SA_NiHu_Masterprac_group10_B 44.968 16.156 1965500 0 754600 0 0 0 1210900 3500 936 3461 15357;15358 10182 10182 1 INQVFHGSCITEGNELTK Unmodified 2045.984 0.98403894 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 125.65 116.18 3 2.6594E-210 6 76360 20150910_Q1_SA_NiHu_Masterprac_group10_C 164.58 142.9 167990000 58748000 14361000 31719000 13325000 10110000 39728000 3501 1012 3462 15359;15360;15361;15362;15363;15364 10183;10184;10185;10186;10187;10188 10188 6 INRAYEVLKDEDLR Unmodified 1732.9108 0.91079765 1287 Q8IXB1;Q8IXB1-2;F8W884;Q3B7W8;E7EP04;Q71S60 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 2 2 119.26 109.54 3;4 0.0045667 4 75257 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.527 32.571 38378000 970530 8107000 2535500 2715900 6260000 17789000 3502 1287 3463 15365;15366;15367;15368;15369;15370;15371;15372 10189;10190;10191;10192 10191 4 INSAPPTETK Unmodified 1056.5451 0.54513908 1536 Q9NRL2-2;Q9NRL2;F5H239 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 49.128 38.15 2 0.0084895 1 30998 20150910_Q1_SA_NiHu_Masterprac_group13_C 82.417 29.691 412850 0 0 412850 0 0 0 3503 1536 3464 15373 10193 10193 1 INSSSVKQEATFCSQR Unmodified 1840.8738 0.87376021 1533 Q9NQW6;Q9NQW6-2;H7C167;H7C0Y6 ANLN Actin-binding protein anillin yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 85.382 79.467 3 9.3678E-05 4 54399 20150910_Q1_SA_NiHu_Masterprac_group10_B 87.519 72.005 7311500 1251100 2149200 1545300 630890 0 1734900 3504 1533 3465 15374;15375;15376;15377;15378 10194;10195;10196;10197 10196 4 INSSSVKQEATFCSQRDGDASLNK Unmodified 2641.2402 0.24020664 1533 Q9NQW6;Q9NQW6-2;H7C167;H7C0Y6 ANLN Actin-binding protein anillin yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 97.538 89.509 4 9.3906E-05 2 67388 20150910_Q1_SA_NiHu_Masterprac_group13_C 57.806 44.654 17875000 4394900 2729600 5133600 1817800 1893100 1905700 3505 1533 3466 15379;15380;15381;15382;15383;15384 10198;10199 10198 2 INSTVNKDLENRK Unmodified 1529.8162 0.81616898 638 Q6PH81;H3BQL3 C16orf87 UPF0547 protein C16orf87 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 54.244 47.426 3 0.012679 1 39096 20150910_Q1_SA_NiHu_Masterprac_group13_C 62.694 38.76 2324700 0 0 1286200 431000 161990 445470 3506 638 3467 15385;15386;15387;15388 10200 10200 1 INTDVQLDSQEK Unmodified 1388.6783 0.6783381 669 H7C2E8;Q9BVS5 TRMT61B tRNA (adenine(58)-N(1))-methyltransferase, mitochondrial yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 91.545 84.526 2 0.001793 3 57820 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.529 52.615 2071400 0 543470 585030 0 0 942860 3507 669 3468 15389;15390;15391 10201;10202;10203 10202 2 INVQNNVDLGQPVK Unmodified 1536.826 0.82600539 49 A8MVI8;Q6NW34-2;Q6NW34;E9PFF8 C3orf17 Uncharacterized protein C3orf17 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 120.72 113.63 2 5.7117E-30 3 77180 20150910_Q1_SA_NiHu_Masterprac_group15_B 116.9 90.921 7295100 4652000 1550700 0 0 0 1092500 3508 49 3469 15392;15393;15394 10204;10205;10206 10204 2 INVQNNVDLGQPVKNK Unmodified 1778.9639 0.96389585 49 A8MVI8;Q6NW34-2;Q6NW34;E9PFF8 C3orf17 Uncharacterized protein C3orf17 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 101.82 96.252 3 0.0023897 2 65809 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.968 50.827 35190000 0 6311300 5734000 2477300 0 20667000 3509 49 3470 15395;15396;15397;15398 10207;10208 10208 2 INVYYNEATGGK Unmodified 1327.6408 0.64083038 1007 P68371 TUBB4B Tubulin beta-4B chain yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 100.71 93.71 2 0.014477 2 63800 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.291 32.147 9216600 0 2189900 0 0 1734000 5292700 3510 1007 3471 15399;15400;15401 10209;10210 10209 2 INVYYNEATGGKYVPR Unmodified 1842.9264 0.92644771 1007 P68371 TUBB4B Tubulin beta-4B chain yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 126.89 116.62 3 0.0010077 3 81918 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.507 64.267 25478000 0 2532100 5340300 0 11943000 5662800 3511 1007 3472 15402;15403;15404;15405 10211;10212;10213 10212 3 IPCKSPPPELTDTATSTK Unmodified 1941.9717 0.97174292 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 94.552 89.299 3 0.028842 1 61261 20150910_Q1_SA_NiHu_Masterprac_group15_B 36.214 22.231 7686200 0 1204700 0 250200 553350 5678000 3512 919;920 3473 15406;15407;15408;15409 10214 10214 1 IQAIAWAR Unmodified 927.52904 0.5290355 852 P17812;B4DR64 CTPS1 CTP synthase 1 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 131.29 114.14 2 0.0066096 3 76851 20150910_Q1_SA_NiHu_Masterprac_group10_C 96.19 45.225 20814000 7436300 0 9326800 0 4051300 0 3513 852 3474 15410;15411;15412 10215;10216;10217 10217 3 IQAQNRVVSAPVGK Unmodified 1465.8365 0.83651049 1081 Q13416 ORC2 Origin recognition complex subunit 2 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 74.439 68.654 3 0.0078671 1 47924 20150910_Q1_SA_NiHu_Masterprac_group10_B 52.821 7.2075 39950000 1933000 10065000 7622800 3538500 0 16791000 3514 1081 3475 15413;15414;15415;15416;15417 10218 10218 1 IQAQNRVVSAPVGKETPSK Unmodified 2008.1065 0.10653734 1081 Q13416 ORC2 Origin recognition complex subunit 2 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 76.37 68.892 3;4 9.026E-11 8 48042 20150910_Q1_SA_NiHu_Masterprac_group10_B 93.342 66.98 37578000 3173300 4614600 11944000 5732100 5871800 6242500 3515 1081 3476 15418;15419;15420;15421;15422;15423;15424;15425;15426;15427;15428;15429 10219;10220;10221;10222;10223;10224;10225;10226 10225 8 IQELEGQLDK Unmodified 1171.6085 0.60846762 936 P49454 CENPF Centromere protein F yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 89.223 88.245 2 0.039183 1 60562 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.567 12.168 1282900 0 0 0 380230 0 902660 3516 936 3477 15430;15431 10227 10227 1 IQELEGQLDKLK Unmodified 1412.7875 0.78749461 936 P49454 CENPF Centromere protein F yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 131.16 113.16 3 3.9241E-09 1 81854 20150910_Q1_SA_NiHu_Masterprac_group13_C 110.98 78.118 3121900 0 0 3121900 0 0 0 3517 936 3478 15432 10228 10228 0 IQFKPDDGISPER Unmodified 1500.7573 0.75725712 1394 Q96I24 FUBP3 Far upstream element-binding protein 3 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 119.42 103.43 3 0.0019213 1 75300 20150910_Q1_SA_NiHu_Masterprac_group13_C 82.202 34.96 2641100 1055000 0 1586100 0 0 0 3518 1394 3479 15433;15434 10229 10229 1 IQFKQDDGTGPEK Unmodified 1461.71 0.70997257 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 2 2 2 2 65.19 59.479 2;3 2.2264E-109 8 42180 20150910_Q1_SA_NiHu_Masterprac_group10_B 149.82 103.92 367720000 54733000 66249000 0 21626000 93378000 131740000 3519 1366 3480 15435;15436;15437;15438;15439;15440;15441;15442;15443;15444;15445 10230;10231;10232;10233;10234;10235;10236;10237 10236 7 IQHAVQLATEPLEK Unmodified 1575.8621 0.86205654 938 P49589;P49589-3;P49589-2;B4DKY1;A8MVQ3 CARS Cysteine--tRNA ligase, cytoplasmic yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 115.16 105.96 2 0.0045757 2 75188 20150910_Q1_SA_NiHu_Masterprac_group15_C 57.414 29.304 3308200 308270 238470 0 0 1380700 1380800 3520 938 3481 15446;15447;15448;15449 10238;10239 10239 2 IQIASESSGIPERPCVLTGTPESIEQAK Unmodified 2996.5125 0.51246533 1394 Q96I24;A6NJ37;Q96I24-2 FUBP3 Far upstream element-binding protein 3 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 133.03 124.75 3 0 6 84068 20150910_Q1_SA_NiHu_Masterprac_group13_C 170.68 152.75 775880000 0 143390000 200730000 126280000 39522000 265950000 3521 1394 3482 15450;15451;15452;15453;15454 10240;10241;10242;10243;10244;10245 10241 6 IQIVTALDHNTQGK Unmodified 1536.826 0.82600539 831 P13056-2;P13056-3;P13056 NR2C1 Nuclear receptor subfamily 2 group C member 1 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 118.34 109.69 3 0.001217 2 72117 20150910_Q1_SA_NiHu_Masterprac_group10_B 82.202 66.383 5605600 2883300 2722300 0 0 0 0 3522 831 3483 15455;15456 10246;10247 10246 2 IQIVTAVDASGSPK Unmodified 1384.7562 0.75619449 256 C9JKS0;P49116;P49116-2;C9JMI6 NR2C2 Nuclear receptor subfamily 2 group C member 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 121.79 117.12 2 0.020662 1 79699 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.968 2.8846 499970 0 0 0 0 0 499970 3523 256 3484 15457 10248 10248 1 IQLQIQETLQR Unmodified 1368.7725 0.77251325 100 E9PF10;O75694-2;B4DLT2;O75694 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 132.86 130.08 2 2.3399E-30 2 85548 20150910_Q1_SA_NiHu_Masterprac_group10_B 130.1 33.984 36286000 0 30703000 0 0 0 5582800 3524 100 3485 15458;15459 10249;10250 10250 2 IQLSDSEAK Unmodified 989.50294 0.50293991 1634 Q9Y2M0-2;Q9Y2M0;H3BQ24 FAN1 Fanconi-associated nuclease 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 60.589 57.605 2 0.0060612 1 40607 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.667 58.371 7103300 1295700 1594600 0 1534000 0 2679000 3525 1634 3486 15460;15461;15462;15463 10251 10251 1 IQNDAGVRIQFK Unmodified 1387.7572 0.75719754 1366;1394 Q92945-2;Q92945;E7EP96;Q96I24;A6NJ37;Q96I24-2 KHSRP;FUBP3 Far upstream element-binding protein 2;Far upstream element-binding protein 3 no no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 111.72 102.65 3 0.0019127 2 70169 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.821 63.813 7527600 819200 1363800 1080500 0 0 4264100 3526 1366;1394 3487 15464;15465;15466;15467 10252;10253 10252 2 IQNDAGVRIQFKQDDGTGPEK Unmodified 2315.1506 0.150587 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 2 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 2 2 106.03 97.322 3;4 2.7513E-05 4 64682 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.017 43.607 166740000 22755000 19989000 25747000 19646000 25870000 52730000 3527 1366 3488 15468;15469;15470;15471;15472;15473;15474;15475;15476;15477 10254;10255;10256;10257 10257 3 IQNGAQGIR Unmodified 955.51993 0.51992738 322 D6RBM0;E9PCY7;P31943;G8JLB6;D6RIU0;D6RAM1;D6R9T0;D6RFM3;D6RIT2;D6RDU3;D6RJ04;D6RIH9;E7EQJ0;E7EN40;D6RDL0;D6RF17 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 39.261 36.952 2 0.023508 1 26062 20150910_Q1_SA_NiHu_Masterprac_group10_B 67.897 37.731 821410 0 821410 0 0 0 0 3528 322 3489 15478 10258 10258 1 IQNGAQGIRFIYTR Unmodified 1635.8845 0.88452332 322 D6RBM0;E9PCY7;P31943;G8JLB6;D6RIU0;D6RAM1;D6R9T0;D6RFM3;D6RIT2;D6RDU3;D6RJ04;D6RIH9;E7EQJ0;E7EN40;D6RDL0;D6RF17 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 132.14 121.54 2;3 8.8052E-05 8 86544 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.243 51.418 396600000 83002000 0 95727000 38444000 52330000 127100000 3529 322 3490 15479;15480;15481;15482;15483;15484;15485 10259;10260;10261;10262;10263;10264;10265;10266 10263 8 IQNGTSGIRFIYTR Unmodified 1624.8685 0.8685389 970 P55795;B4DFK9 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H2, N-terminally processed yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 131.33 121 3 1.1345E-07 3 86190 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.82 66.908 48398000 0 14452000 7945400 0 5443500 20557000 3530 970 3491 15486;15487;15488;15489 10267;10268;10269 10267 3 IQQDSGCKVQISPDSGGLPER Unmodified 2270.0961 0.09610859 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 113 103.59 3 4.1252E-06 6 68151 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.308 49.383 69322000 9030000 14211000 12816000 5924200 10028000 17313000 3531 1366 3492 15490;15491;15492;15493;15494;15495;15496;15497 10270;10271;10272;10273;10274;10275 10274 6 IQQDSGCKVQISPDSGGLPERSVSLTGAPESVQK Unmodified 3553.7682 0.7682391 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 131.46 121.96 4 2.7801E-143 7 86378 20150910_Q1_SA_NiHu_Masterprac_group15_B 120.93 104.47 376280000 79769000 130780000 46090000 38040000 7037700 74560000 3532 1366 3493 15498;15499;15500;15501;15502;15503 10276;10277;10278;10279;10280;10281;10282 10278 6 IQQIIEGK Unmodified 927.53893 0.53893149 336 O60313;E5KLK1;E5KLJ6;E5KLJ9;O60313-2;E5KLJ5 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 68.129 66.974 2 3.0597E-09 1 46656 20150910_Q1_SA_NiHu_Masterprac_group15_B 122.19 35.354 2660200 0 0 0 0 0 2660200 3533 336 3494 15504 10283 10283 1 IQQQFSDLKRK Unmodified 1389.7728 0.7728476 757 O94906-2;O94906 PRPF6 Pre-mRNA-processing factor 6 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 60.565 52.997 3 0.019404 1 39340 20150910_Q1_SA_NiHu_Masterprac_group10_C 70.412 42.736 721750 721750 0 0 0 0 0 3534 757 3495 15505 10284 10284 1 IQQQRLLDIAK Unmodified 1324.7827 0.78268401 894 P35249;C9JZI1 RFC4 Replication factor C subunit 4 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 115.62 106.29 3 0.014541 1 69957 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.84 15.226 2101800 0 1428100 0 0 673730 0 3535 894 3496 15506;15507 10285 10285 1 IQRRGPCIIYNEDNGIIK Unmodified 2158.1317 0.13170624 392 E7EWF1;P36578;H3BM89;B4DMJ2 RPL4 60S ribosomal protein L4 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 123.75 118.99 4 0.0023958 1 80816 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.591 21.519 2277900 0 0 0 0 0 2277900 3536 392 3497 15508 10286 10286 1 IQRSNGLIHSANVR Unmodified 1563.8594 0.8593712 193 B7Z6Q6;Q99661;Q5JR91 KIF2C Kinesin-like protein KIF2C yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 68.563 59.865 3 0.0027342 1 41997 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.68 41.897 80238000 0 11626000 27259000 0 13078000 28274000 3537 193 3498 15509;15510;15511;15512 10287 10287 1 IQRSNGLIHSANVRTVNLEK Unmodified 2248.24 0.24001113 193 B7Z6Q6;Q99661;Q5JR91 KIF2C Kinesin-like protein KIF2C yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 103.28 94.98 4 0.00031255 3 70662 20150910_Q1_SA_NiHu_Masterprac_group13_C 60.542 49.561 29557000 5292800 5778800 11191000 279670 3265300 3749100 3538 193 3499 15513;15514;15515;15516;15517;15518 10288;10289;10290 10288 3 IQSGIFGK Unmodified 848.4756 0.47560295 965 P54132;F5H7R6;F5H3V6 BLM Bloom syndrome protein yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 97.233 87.718 2 0.015951 2 60130 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.206 39.089 5769300 298890 843570 734290 0 967390 2925200 3539 965 3500 15519;15520;15521;15522;15523 10291;10292 10291 2 IQSQFTDAQK Unmodified 1164.5775 0.57750184 840 P15924;P15924-2;H7BYR0 DSP Desmoplakin yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 65.199 58.301 2 0.024554 1 47187 20150910_Q1_SA_NiHu_Masterprac_group13_C 59.84 32.792 9967800 0 1824000 2531800 636770 1517400 3457900 3540 840 3501 15524;15525;15526;15527;15528 10293 10293 1 IQTQPGYANTLRDAAPK Unmodified 1842.9588 0.95881047 545 F8VVM2;Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 113.03 102.88 3 0.0023672 3 69380 20150910_Q1_SA_NiHu_Masterprac_group10_C 53.565 24.752 9423700 2205100 3150000 636020 2482400 950230 0 3541 545 3502 15529;15530;15531;15532;15533 10294;10295;10296 10296 2 IRASETGSDEAIK Unmodified 1375.6943 0.69432251 906 P39880-2;P39880;P39880-3;P39880-4 CUX1 Homeobox protein cut-like 1 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 52.295 46.237 2;3 0.0019213 5 37921 20150910_Q1_SA_NiHu_Masterprac_group13_C 82.202 52.397 21358000 2617000 2813900 3840900 1764400 2857700 7464300 3542 906 3503 15534;15535;15536;15537;15538;15539;15540;15541;15542;15543;15544;15545 10297;10298;10299;10300;10301 10297 5 IRAVEEQIEYLQK Unmodified 1617.8726 0.87262123 1204 Q5VTR2 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 127.27 124.48 3 0.00047081 1 84406 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.348 61.692 11800000 0 860770 0 0 0 10939000 3543 1204 3504 15546;15547 10302 10302 1 IREEYPDRIMNTFSVVPSPK Unmodified 2377.21 0.21001614 1007;542 P68371;E7EWR1;Q5ST81;F5H894;F8VUJ7;Q5JP53;F8VYX6;F8VW92;P07437 TUBB4B;TUBB Tubulin beta-4B chain;Tubulin beta chain no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 133.6 128.63 3 0.0016183 1 88690 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.29 0.5818 75263000 0 0 0 0 0 75263000 3544 1007;542 3505 15548 10303 10303 1 IRGAALDVHESEPFSFAQGPLK Unmodified 2368.2175 0.21754435 973 P56545;Q5SQP8;P56545-2 CTBP2 C-terminal-binding protein 2 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 133.35 115.35 3 0.022167 1 84329 20150910_Q1_SA_NiHu_Masterprac_group13_C 48.896 28.984 0 0 0 0 0 0 0 3545 973 3506 15549 10304 10304 1 IRGPEESQPPQLYAADEEEAPGTRDPTR Unmodified 3108.4748 0.47483427 1185 Q5RKV6 EXOSC6 Exosome complex component MTR3 yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 124.06 113.94 4 0.001049 2 75360 20150910_Q1_SA_NiHu_Masterprac_group10_C 39.079 27.926 5551600 2718700 0 0 0 0 2833000 3546 1185 3507 15550;15551 10305;10306 10306 2 IRITLTSRNVK Unmodified 1299.7987 0.79866842 979 P60866;P60866-2;E5RJX2;E5RIP1 RPS20 40S ribosomal protein S20 yes no 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 88.105 80.443 3 3.3758E-41 3 60474 20150910_Q1_SA_NiHu_Masterprac_group15_C 132.32 98.428 17238000 4485300 1090400 1562400 4492600 3760400 1846900 3547 979 3508 15552;15553;15554;15555;15556;15557 10307;10308;10309 10308 3 IRLENEIQTYR Unmodified 1433.7627 0.76267685 298 P13645;CON__P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 114.22 108.4 3 0.033725 1 71218 20150910_Q1_SA_NiHu_Masterprac_group10_B 50.484 17.868 2848800 0 708450 1140300 519560 0 480560 + 3548 298 3509 15558;15559;15560;15561 10310 10310 1 IRLNYSDESPEAGK Unmodified 1577.7686 0.76855009 361 Q9GZR1-2;Q9GZR1;E7EQN6 SENP6 Sentrin-specific protease 6 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 88.624 86.642 3 0.014637 2 59299 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.639 31.117 3899700 0 1712200 0 0 0 2187500 3549 361 3510 15562;15563 10311;10312 10311 2 IRMPTKEDEEEDEPVVIK Unmodified 2156.0671 0.067099872 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 3 1 120.18 111.78 3;4 0 10 79863 20150910_Q1_SA_NiHu_Masterprac_group13_C 194.05 161.19 119830000 13087000 10709000 65529000 11673000 0 18827000 3550 1611 3511 15564;15565;15566;15567;15568;15569;15570;15571;15572;15573 10313;10314;10315;10316;10317;10318;10319;10320;10321;10322 10315 9 IRMPTKEDEEEDEPVVIK Oxidation (M) 2172.062 0.062014494 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 1 2 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 96.703 88.895 4 0.0053238 2 60050 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.738 53.118 6181900 1087500 839800 1626800 0 0 2627800 3551 1611 3511 15574;15575;15576;15577 10323;10324 10324 178 2 IRNVFHCEPANILYICENQPLKK Unmodified 2855.4575 0.45747382 1049 Q08AF3 SLFN5 Schlafen family member 5 yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 132.79 123.86 4;5 2.0289E-07 3 81806 20150910_Q1_SA_NiHu_Masterprac_group15_C 68.134 53.084 19606000 0 0 0 8469000 11136000 0 3552 1049 3512 15578;15579 10325;10326;10327 10327 3 IRSSNFLVTQGYQVK Unmodified 1738.9366 0.93661847 1314 Q8NB16;I3L4A6 MLKL Mixed lineage kinase domain-like protein yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 130.41 119.01 3 2.7928E-08 4 85167 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.755 56.778 64668000 11208000 5020500 17419000 0 4433600 26587000 3553 1314 3513 15580;15581;15582;15583;15584 10328;10329;10330;10331 10328 4 ISALENSKNSDLEK Unmodified 1546.7839 0.7838658 1262 Q86UE8-3;Q86UE8-2;Q86UE8 TLK2 Serine/threonine-protein kinase tousled-like 2 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 73.963 65.793 3 0.02587 1 47277 20150910_Q1_SA_NiHu_Masterprac_group10_C 43.03 13.563 770370 770370 0 0 0 0 0 3554 1262 3514 15585 10332 10332 1 ISALENSKNSDLEKK Unmodified 1674.8788 0.87882882 1262 Q86UE8-3;Q86UE8-2;Q86UE8 TLK2 Serine/threonine-protein kinase tousled-like 2 yes no 0 0 2 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 62.712 54.751 3 0.012016 2 38900 20150910_Q1_SA_NiHu_Masterprac_group13_B 55.724 29.492 4266400 547250 780280 1464800 816950 657120 0 3555 1262 3515 15586;15587;15588;15589;15590 10333;10334 10333 2 ISANENSLAVR Unmodified 1172.6149 0.61494998 107 F8VQE1;Q9UHB6-2;B4DN52;Q9UHB6;Q9UHB6-4;F8VS07;Q9UHB6-3;F8VRN8 LIMA1 LIM domain and actin-binding protein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 89.369 81.691 2 8.629E-30 6 62600 20150910_Q1_SA_NiHu_Masterprac_group13_C 127.83 87.982 21956000 1424500 3651400 2942900 1558300 3193700 9185600 3556 107 3516 15591;15592;15593;15594;15595;15596 10335;10336;10337;10338;10339;10340 10336 6 ISASGPESLLGGPGGASAAPAAGSK Unmodified 2109.0702 0.070211415 1638 Q9Y2U8 LEMD3 Inner nuclear membrane protein Man1 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 132.67 126.82 2 1.8698E-51 5 87980 20150910_Q1_SA_NiHu_Masterprac_group15_B 105.71 61.912 36185000 0 11656000 0 4169700 4511400 15848000 3557 1638 3517 15597;15598;15599;15600 10341;10342;10343;10344;10345 10342 5 ISAWHNNVEK Unmodified 1196.5938 0.5938206 1105 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 61.285 60.13 2 0.03698 1 42258 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.24 30.704 0 0 0 0 0 0 0 3558 1105 3518 15601 10346 10346 1 ISCAGPQTYK Unmodified 1123.5332 0.53319418 1403 Q96KR1;B5MEH6 ZFR Zinc finger RNA-binding protein yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 61.117 54.391 2 0.0078923 4 44344 20150910_Q1_SA_NiHu_Masterprac_group13_C 83.862 53.298 50784000 3392200 4740400 4482800 4001500 22423000 11745000 3559 1403 3519 15602;15603;15604;15605;15606;15607 10347;10348;10349;10350 10348 4 ISCAGPQTYKEHLEGQK Unmodified 1944.9364 0.93636047 1403 Q96KR1;B5MEH6 ZFR Zinc finger RNA-binding protein yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 1 1 1 1 84.107 75.134 3;4 0.0035529 6 57345 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.682 44.894 21161000 8088000 5222400 1760900 0 3631600 2457700 3560 1403 3520 15608;15609;15610;15611;15612;15613 10351;10352;10353;10354;10355;10356 10352 6 ISCAGPQTYKEHLEGQKHK Unmodified 2210.0902 0.090235351 1403 Q96KR1;B5MEH6 ZFR Zinc finger RNA-binding protein yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 67.926 58.826 4 0.014659 1 41539 20150910_Q1_SA_NiHu_Masterprac_group10_B 38.777 25.154 1462200 0 1014700 447550 0 0 0 3561 1403 3521 15614;15615 10357 10357 1 ISDIQSQLEK Unmodified 1159.6085 0.60846762 1550 Q9NVP1;F5H863 DDX18 ATP-dependent RNA helicase DDX18 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 96.233 90.893 2 0.0026367 3 62049 20150910_Q1_SA_NiHu_Masterprac_group15_B 100.82 10.67 33924000 0 4578500 3587100 3834000 0 21925000 3562 1550 3522 15616;15617;15618;15619 10358;10359;10360 10359 3 ISDQHTLQTFQGMCK Unmodified 1792.8236 0.8236389 1461 Q9BX63-2;Q9BX63 BRIP1 Fanconi anemia group J protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 113.31 109.25 3 0.0076044 1 74891 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.506 30.366 1122900 0 0 0 0 0 1122900 3563 1461 3523 15620 10361 10361 1 ISEGTGFRIHMIHK Unmodified 1624.8508 0.85078035 1635 Q9Y2R4;A8MTP9 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 107.21 97.689 3 0.010381 2 65010 20150910_Q1_SA_NiHu_Masterprac_group13_B 50.897 11.316 26069000 0 0 3842800 4016800 7571000 10638000 3564 1635 3524 15621;15622;15623;15624 10362;10363 10362 2 ISETSSVESVMGIK Unmodified 1465.7334 0.73341013 17 F8VW34;F8VX54;F8VZH2;F8VWK5;F8VUY0;F8VVS9;A6NE42;Q15583-2;Q15583-3;Q15583 TGIF1 Homeobox protein TGIF1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.98 132.38 2 0.0011742 1 85972 20150910_Q1_SA_NiHu_Masterprac_group10_B 84.753 59.457 29315000 0 29315000 0 0 0 0 3565 17 3525 15625 10364 10364 1 ISFEEFER Unmodified 1055.4924 0.49237523 1656 Q9Y5Q9-2;Q9Y5Q9;F8WC64;H0YFI7 GTF3C3 General transcription factor 3C polypeptide 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 133.45 128.49 2 0.027829 1 88560 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.879 53.776 6059800 0 0 0 0 0 6059800 3566 1656 3526 15626 10365 10365 1 ISFVEEDVHPK Unmodified 1298.6507 0.65066678 1345 Q8WYP5;Q8WYP5-3;Q8WYP5-2 AHCTF1 Protein ELYS yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 110.23 101.38 3 0.016783 2 74105 20150910_Q1_SA_NiHu_Masterprac_group13_C 55.721 40.904 9846700 1038600 1950700 1360500 595850 532710 4368300 3567 1345 3527 15627;15628;15629;15630;15631;15632 10366;10367 10366 2 ISHQNYIAYQK Unmodified 1363.6884 0.68844927 1264 Q86UV5;B7ZKS7;Q86UV5-6 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 74.137 66.726 3 0.00020848 6 51948 20150910_Q1_SA_NiHu_Masterprac_group15_C 98.754 85.025 14301000 1241300 1513900 1756400 1269300 3260000 5260200 3568 1264 3528 15633;15634;15635;15636;15637;15638 10368;10369;10370;10371;10372;10373 10371 6 ISHVVVEDTVVSDK Unmodified 1525.7988 0.79878758 1253 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 WAPAL Wings apart-like protein homolog yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 3 3 2 102.25 94.165 2;3 1.0952E-70 9 64300 20150910_Q1_SA_NiHu_Masterprac_group15_B 136.6 115.35 109770000 19760000 161230 2507100 36491000 19275000 31580000 3569 1253 3529 15639;15640;15641;15642;15643;15644;15645;15646;15647;15648;15649;15650 10374;10375;10376;10377;10378;10379;10380;10381;10382 10379 7 ISIGGGSCAISGGYGSR Unmodified 1597.7519 0.75185416 287;788 P02538;CON__P02538;E7EUE8;P04259;CON__P04259;F5H6G5 KRT6A;KRT6B Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B no no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 2 126.74 113.75 2 0.0019699 2 78711 20150910_Q1_SA_NiHu_Masterprac_group15_C 56.121 24.413 3945100 974240 491410 0 0 2479400 0 + 3570 287;788 3530 15651;15652;15653;15654 10383;10384 10383 2 ISKSPDGAHLTWEPPSVTSGK Unmodified 2193.1066 0.10659692 18 A6NEM2;P51610-2;P51610;H7C1C4 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 2 126.81 124.03 3;4 0.00021561 4 84114 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.107 41.795 10852000 0 1845700 0 0 0 9006300 3571 18 3531 15655;15656;15657;15658 10385;10386;10387;10388 10386 4 ISLEYSELQDK Unmodified 1323.6558 0.65581174 634 O75150-4;H3BP71;O75150;O75150-3;H3BS50;B3KQV1 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 129.94 129.33 2 0.033497 1 82869 20150910_Q1_SA_NiHu_Masterprac_group10_B 50.354 30.039 1767900 0 1767900 0 0 0 0 3572 634 3532 15659 10389 10389 1 ISLLRSDITK Unmodified 1144.6816 0.68157298 1439 Q9BQ69 MACROD1 O-acetyl-ADP-ribose deacetylase MACROD1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 113.53 106.13 2 0.0084015 1 72657 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.05 35.791 5528800 0 1385900 0 0 753500 3389400 3573 1439 3533 15660;15661;15662 10390 10390 1 ISLQPIATVPNGGTTPK Unmodified 1692.941 0.94103514 1520 Q9HCI7;G5E9I1 MSL2 E3 ubiquitin-protein ligase MSL2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 132.92 130.14 2 0.00047777 2 85609 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.41 41.786 34990000 0 20665000 0 0 0 14325000 3574 1520 3534 15663;15664 10391;10392 10392 1 ISNPTEFQNHEK Unmodified 1442.679 0.6790068 1463 Q9BXS6-2;Q9BXS6-3;Q9BXS6;E7ERR5;Q9BXS6-5;E9PB35 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 2 1 2 2 73.097 64.547 2;3 0.0068973 6 50441 20150910_Q1_SA_NiHu_Masterprac_group15_C 62.298 36.066 25043000 1409700 5166400 4781800 1252800 3115400 9316600 3575 1463 3535 15665;15666;15667;15668;15669;15670;15671;15672;15673 10393;10394;10395;10396;10397;10398 10396 5 ISNQVDLSNVCAQYR Unmodified 1765.8417 0.8417318 100 E9PF10;O75694-2;B4DLT2;O75694 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 130.98 121.48 2 0 6 85818 20150910_Q1_SA_NiHu_Masterprac_group15_B 238.67 212.32 267310000 57424000 28281000 35769000 7539600 6664600 131640000 3576 100 3536 15674;15675;15676;15677;15678;15679 10399;10400;10401;10402;10403;10404 10401 6 ISNQVDLSNVCAQYRQVR Unmodified 2149.0698 0.06983426 100 E9PF10;O75694-2;B4DLT2;O75694 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 1 131.51 120.82 3 1.4945E-155 7 85821 20150910_Q1_SA_NiHu_Masterprac_group15_B 149.3 127.36 993300000 133530000 173640000 171830000 76545000 28180000 409580000 3577 100 3537 15680;15681;15682;15683;15684;15685;15686 10405;10406;10407;10408;10409;10410;10411 10407 7 ISNTAISISDHTALAQFCKEK Unmodified 2333.1685 0.16854525 239 C9JBJ1;C9JTV6;F8WD69;P22102-2;P22102;C9JZG2;C9JKQ7 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 2 1 132.32 131.92 3 0.00075907 2 84769 20150910_Q1_SA_NiHu_Masterprac_group10_B 54.058 28.063 58846000 0 40204000 0 18642000 0 0 3578 239 3538 15687;15688;15689 10412;10413 10413 2 ISQAWCETNLRR Unmodified 1532.7518 0.75179458 1357 Q92766-3;Q92766;Q92766-2;C9JU34 RREB1 Ras-responsive element-binding protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 95.774 93.417 3 0.035721 1 63845 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.875 22.525 2360800 0 0 0 0 0 2360800 3579 1357 3539 15690 10414 10414 1 ISQSELFDNK Unmodified 1179.5772 0.57716749 42 A8MTM6;Q15398;Q15398-1 DLGAP5 Disks large-associated protein 5 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 112.15 99.338 2 6.2851E-09 1 67632 20150910_Q1_SA_NiHu_Masterprac_group15_B 114.89 86.98 6738800 612920 0 700630 0 1551700 3873600 3580 42 3540 15691;15692;15693;15694 10415 10415 1 ISSADPSGAFR Unmodified 1106.5356 0.53563702 1091 Q13751 LAMB3 Laminin subunit beta-3 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 98.099 81.207 2 0.016471 1 62324 20150910_Q1_SA_NiHu_Masterprac_group13_C 58.172 27.443 603720 0 0 603720 0 0 0 3581 1091 3541 15695 10416 10416 1 ISSLLEEQFQQGK Unmodified 1505.7726 0.77257283 985 Q5JR95;P62241 RPS8 40S ribosomal protein S8 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 132.43 131.82 2 0 3 85315 20150910_Q1_SA_NiHu_Masterprac_group10_B 281.32 231.99 41217000 0 41217000 0 0 0 0 3582 985 3542 15696;15697 10417;10418;10419 10418 3 ISSMTETAPR Unmodified 1091.5281 0.52810881 18 A6NEM2 HCFC1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 65.41 58.332 2 0.0086058 5 41444 20150910_Q1_SA_NiHu_Masterprac_group10_B 81.017 20.188 8242100 928420 831930 1333300 509230 1846800 2792400 3583 18 3543 15698;15699;15700;15701;15702;15703 10420;10421;10422;10423;10424 10423 5 ISSSLPSGNNNGK Unmodified 1273.6262 0.62624295 1375 Q96CB8;C9JDP3;C9J0M6;E9PGI3 INTS12 Integrator complex subunit 12 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 58.253 51.761 2 0.0094432 2 42088 20150910_Q1_SA_NiHu_Masterprac_group15_C 56.139 14.056 3646900 397170 631060 793630 164840 695860 964320 3584 1375 3544 15704;15705;15706;15707;15708;15709 10425;10426 10425 2 ISSTPTTETIRGIDSDDVQDNSQLK Unmodified 2719.3148 0.31481138 1415 Q96QE3;Q96QE3-2 ATAD5 ATPase family AAA domain-containing protein 5 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 130.3 127.52 3 1.6721E-15 2 85488 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.057 57.047 12767000 0 5980600 0 0 0 6786900 3585 1415 3545 15710;15711 10427;10428 10427 2 ISSVLAGGSCR Unmodified 1105.555 0.55499226 286;297 P02533;CON__P02533;P08779;CON__P08779 KRT14;KRT16 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16 no no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 77.525 71.829 2 0.013086 2 55005 20150910_Q1_SA_NiHu_Masterprac_group15_C 61.235 29.601 7690300 900600 994110 0 3033900 1326800 1434900 + 3586 286;297 3546 15712;15713;15714;15715;15716 10429;10430 10430 2 ISSVLAGGSCRAPSTYGGGLSVSSR Unmodified 2425.202 0.20197064 297 P08779;CON__P08779 KRT16 Keratin, type I cytoskeletal 16 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 130.43 130.13 3 6.3068E-97 2 83255 20150910_Q1_SA_NiHu_Masterprac_group10_B 123.17 101.5 64922000 0 12598000 0 52324000 0 0 + 3587 297 3547 15717;15718 10431;10432 10432 2 ISSVLAGGSCRAPSTYGGGLSVSSSR Unmodified 2512.234 0.23399905 286 P02533;CON__P02533 KRT14 Keratin, type I cytoskeletal 14 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 130.27 129.96 3 3.5664E-116 2 83266 20150910_Q1_SA_NiHu_Masterprac_group13_B 125.08 110.04 37241000 0 9550000 0 27691000 0 0 + 3588 286 3548 15719;15720 10433;10434 10433 2 ISTISSVR Unmodified 861.49198 0.4919813 840 P15924;P15924-2 DSP Desmoplakin yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 64.81 62.727 2 0.008839 1 44083 20150910_Q1_SA_NiHu_Masterprac_group10_B 93.143 56.383 2618100 0 630400 0 0 0 1987700 3589 840 3549 15721;15722 10435 10435 1 ISTPQTNTVPIKPLISTPPVSSQPK Unmodified 2629.4691 0.46906759 1446 Q9BTA9-2;Q9BTA9;Q9BTA9-5;Q9NZE0 WAC WW domain-containing adapter protein with coiled-coil yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 133.15 132.54 3 1.574E-38 1 86134 20150910_Q1_SA_NiHu_Masterprac_group10_B 96.777 91.657 40218000 0 40218000 0 0 0 0 3590 1446 3550 15723 10436 10436 1 ISTSDILSEK Unmodified 1091.571 0.57101948 729 O60293-2;O60293 ZFC3H1 Zinc finger C3H1 domain-containing protein yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 112.61 109.78 2 0.03377 1 72115 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.806 55.806 2181600 0 634490 0 0 0 1547100 3591 729 3551 15724;15725 10437 10437 1 ISTTTSEEPCRDK Unmodified 1522.6933 0.69333623 251 O15119-3;C9JIZ8;O15119-2;O15119 TBX3 T-box transcription factor TBX3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 43.704 38.957 3 0.0022756 1 27615 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.03 40.241 2548800 0 637300 809130 0 0 1102400 3592 251 3552 15726;15727;15728 10438 10438 1 ISTVVSSKEVNK Unmodified 1289.7191 0.7190807 903 P37108;H0YLA2 SRP14 Signal recognition particle 14 kDa protein yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 63.711 56.696 2;3 4.2859E-193 11 40213 20150910_Q1_SA_NiHu_Masterprac_group15_B 177.16 132.79 144970000 23570000 17330000 27157000 9544300 26411000 40957000 3593 903 3553 15729;15730;15731;15732;15733;15734;15735;15736;15737;15738;15739;15740;15741 10439;10440;10441;10442;10443;10444;10445;10446;10447;10448;10449 10444 11 ISVATGALEAAQGSK Unmodified 1401.7464 0.74635808 18 A6NEM2;P51610-2;P51610 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 122.52 114.67 2 1.0992E-09 4 81055 20150910_Q1_SA_NiHu_Masterprac_group13_C 96.489 63.557 26840000 7005500 3528300 7770200 939340 0 7596500 3594 18 3554 15742;15743;15744;15745;15746 10450;10451;10452;10453 10451 2 ISVVSATKGVPAGNSDTEGGQPGRK Unmodified 2411.2405 0.24046464 364 E7EQT4;Q9UKV3;Q9UKV3-3;Q9UKV3-2;G3V3T3 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 2 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 91.304 85.328 3;4 0.00083985 2 58496 20150910_Q1_SA_NiHu_Masterprac_group10_C 53.278 38.594 5760700 941190 463360 0 1058900 1309300 1988000 3595 364 3555 15747;15748;15749;15750;15751 10454;10455 10455 1 ISVYYNEATGGK Unmodified 1300.6299 0.62993134 542 F8VUJ7;Q5JP53;F8VYX6;F8VW92;P07437;E9PBJ4 TUBB Tubulin beta chain yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 101.93 93.897 2 0.022435 1 63829 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.897 29.501 9427200 562070 2536400 871300 0 0 5457400 3596 542 3556 15752;15753;15754;15755 10456 10456 1 ISYQSSSTEER Unmodified 1285.5786 0.57862405 790 P04279;P04279-2;Q02383 SEMG1;SEMG2 Semenogelin-1;Alpha-inhibin-92;Alpha-inhibin-31;Seminal basic protein;Semenogelin-2 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 55.114 47.969 2 0.002397 1 39514 20150910_Q1_SA_NiHu_Masterprac_group15_C 87.641 72.961 1906000 0 0 0 0 1633000 272990 3597 790 3557 15756;15757 10457 10457 1 ISYQSSSTEERR Unmodified 1441.6797 0.67973508 790 P04279;P04279-2;Q02383 SEMG1;SEMG2 Semenogelin-1;Alpha-inhibin-92;Alpha-inhibin-31;Seminal basic protein;Semenogelin-2 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 47.457 41.064 3 0.020064 1 34297 20150910_Q1_SA_NiHu_Masterprac_group15_C 44.847 21.379 1386500 0 0 0 0 1093900 292610 3598 790 3558 15758;15759 10458 10458 1 ITAFLSSSKPYTEAASSK Unmodified 1886.9626 0.96255845 1095 Q14146 URB2 Unhealthy ribosome biogenesis protein 2 homolog yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 124.13 119.37 3 0.0014567 1 81059 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.977 66.977 2686800 0 0 0 0 0 2686800 3599 1095 3559 15760 10459 10459 1 ITAQENDMEVELPAAANSR Unmodified 2057.9688 0.96878281 193 B7Z6Q6;Q99661;Q99661-2;Q5JR91;B7Z7M6;Q5JR89 KIF2C Kinesin-like protein KIF2C yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.97 131.37 2 4.942E-295 1 84830 20150910_Q1_SA_NiHu_Masterprac_group10_B 175.77 145.79 4432200 0 4432200 0 0 0 0 3600 193 3560 15761 10460 10460 1 ITAQENDMEVELPAAANSRK Unmodified 2186.0637 0.063745829 193 B7Z6Q6;Q99661;Q99661-2;Q5JR91;B7Z7M6;Q5JR89 KIF2C Kinesin-like protein KIF2C yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 130.49 116.4 3 0 4 76982 20150910_Q1_SA_NiHu_Masterprac_group10_C 184.32 164.64 57377000 14580000 0 15041000 0 7140200 20616000 3601 193 3561 15762;15763;15764;15765 10461;10462;10463;10464 10464 4 ITAQQITTPGAQQK Unmodified 1483.7995 0.79945628 1405 Q96L91-4;Q96L91-3;Q96L91-5;Q96L91-2;Q96L91 EP400 E1A-binding protein p400 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 2 90.043 83.182 2 0.0008968 5 56723 20150910_Q1_SA_NiHu_Masterprac_group10_B 85.909 57.626 13821000 2155400 1548500 3165900 1776800 2164900 3009100 3602 1405 3562 15766;15767;15768;15769;15770;15771;15772 10465;10466;10467;10468;10469 10468 4 ITDGLHALQEASNK Unmodified 1495.7631 0.76307078 770 O95347-2;O95347 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 107.01 99.672 3 0.0011944 4 66030 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.352 37.63 4086800 0 1442000 0 0 646070 1998700 3603 770 3563 15773;15774;15775 10470;10471;10472;10473 10473 4 ITESEEVVSR Unmodified 1147.5721 0.57208211 783 P02545;P02545-3;Q6UYC3;P02545-2;Q3BDU5;Q5TCJ4 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 68.435 61.396 2 0.0028576 4 43333 20150910_Q1_SA_NiHu_Masterprac_group10_B 95.483 39.762 9014700 0 2938000 1397500 1122500 1134600 2422100 3604 783 3564 15776;15777;15778;15779;15780 10474;10475;10476;10477 10477 4 ITESEEVVSREVSGIK Unmodified 1760.9156 0.91560825 783 P02545;P02545-3;Q6UYC3;P02545-2;Q3BDU5;Q5TCJ4 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 124.3 123.7 3 0.0033886 1 79214 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.059 40.731 3155800 0 3155800 0 0 0 0 3605 783 3565 15781 10478 10478 1 ITESPRASMGVLSGK Unmodified 1531.8028 0.8028271 1063 Q12888;Q12888-2;A6NNK5;F8VY86;H7BZY0 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 108.08 97.58 3 0.0079555 2 64821 20150910_Q1_SA_NiHu_Masterprac_group10_B 49.298 23.316 21687000 5290900 3973700 5127000 0 2879500 4416100 3606 1063 3566 15782;15783;15784;15785;15786 10479;10480 10480 2 ITESSLVEITEHK Unmodified 1484.7722 0.77223848 547 Q99590-2;F8VXG7;Q99590;F8W028 SCAF11 Protein SCAF11 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 129.75 120.25 2;3 0 11 77543 20150910_Q1_SA_NiHu_Masterprac_group10_C 213.84 154.62 134520000 39760000 18823000 20308000 6775300 7024600 41824000 3607 547 3567 15787;15788;15789;15790;15791;15792;15793;15794;15795;15796;15797;15798 10481;10482;10483;10484;10485;10486;10487;10488;10489;10490;10491 10490 10 ITEVLVR Unmodified 828.5069 0.50690308 613 H0Y7A5;Q9BX10-2;Q9BX10-4;Q9BX10 GTPBP2 GTP-binding protein 2 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 94.921 87.828 2 0.0078948 2 60107 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.006 29.249 5437800 656650 0 0 504000 1843800 2433300 3608 613 3568 15799;15800;15801;15802 10492;10493 10492 2 ITEVSCKSPQPDPVKTPTSSK Unmodified 2285.1573 0.15731186 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 2 2 83.845 75.578 3;4 1.0254E-06 8 57366 20150910_Q1_SA_NiHu_Masterprac_group15_C 82.765 74.663 101400000 11118000 23747000 19456000 2566800 20768000 23741000 3609 919;920 3569 15803;15804;15805;15806;15807;15808;15809;15810;15811;15812;15813 10494;10495;10496;10497;10498;10499;10500;10501 10499 7 ITEVSCKSPQPESFK Unmodified 1735.8451 0.84508585 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 91.92 84.158 2;3 9.9918E-70 11 62421 20150910_Q1_SA_NiHu_Masterprac_group15_C 131.56 103.01 289940000 31749000 62045000 41316000 23001000 44228000 87599000 3610 919;920 3570 15814;15815;15816;15817;15818;15819;15820;15821;15822;15823;15824;15825 10502;10503;10504;10505;10506;10507;10508;10509;10510;10511;10512 10509 11 ITEVSCKSPQPESFKTSR Unmodified 2080.0259 0.02590376 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 2 1 1 85.631 78.401 3;4 7.8476E-32 5 60720 20150910_Q1_SA_NiHu_Masterprac_group13_C 109.55 93.568 30731000 8355300 10065000 3711100 4760800 1591900 2246200 3611 919;920 3571 15826;15827;15828;15829;15830;15831;15832;15833;15834 10513;10514;10515;10516;10517 10515 5 ITHCPTLLTR Unmodified 1210.6492 0.64922699 23 A6NHR9;A6NHR9-2 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 89.185 81.705 3 0.027662 1 55513 20150910_Q1_SA_NiHu_Masterprac_group10_B 56.043 40.899 13771000 0 1139000 1574900 704220 4481800 5871100 3612 23 3572 15835;15836;15837;15838;15839 10518 10518 1 ITHKGEIEIESDAPMK Unmodified 1796.8978 0.8978497 1353 Q92576-2;Q92576;E7EVH3;E7ER40 PHF3 PHD finger protein 3 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 94.773 86.972 3;4 3.9453E-18 10 58951 20150910_Q1_SA_NiHu_Masterprac_group10_B 103.6 82.357 19796000 2950700 4086900 2964400 1446500 1812400 6534800 3613 1353 3573 15840;15841;15842;15843;15844;15845;15846;15847;15848;15849 10519;10520;10521;10522;10523;10524;10525;10526;10527;10528 10526 10 ITIADCGQLE Unmodified 1118.5278 0.52777445 999 P62937;B4DM82;Q567Q0 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 2 2 1 126.82 123.18 1;2 1.2843E-34 6 79139 20150910_Q1_SA_NiHu_Masterprac_group13_B 108.57 79.019 148920000 95410000 14939000 0 8158200 0 30417000 3614 999 3574 15850;15851;15852;15853;15854;15855 10529;10530;10531;10532;10533;10534 10529 6 ITIPDIK Unmodified 798.48511 0.485105 358 O14757-2;F5H7S4;O14757;E7EPP6;E9PPA5 CHEK1 Serine/threonine-protein kinase Chk1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.42 126.45 2 1.4404E-57 1 86227 20150910_Q1_SA_NiHu_Masterprac_group15_B 152.63 34.623 6705000 0 0 0 0 0 6705000 3615 358 3575 15856 10535 10535 1 ITITNDKGRLSK Unmodified 1344.7725 0.77251325 824;619;846 P11142;E9PKE3;E9PNE6;A8K7Q2;P54652;E9PS65;F8W1P1;B4DXY3;F8WEE3;Q53FA3;P34931;B3KUS2;E9PM13;B4DHP5;P17066;P08107;H0YG33;F8VZJ4;F5H1D3;F5GZ62;Q5SP16;E7EP94 HSPA8;HSPA2;HSPA1L;HSPA6;HSPA1A Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 1-like;Heat shock 70 kDa protein 6;Heat shock 70 kDa protein 1A/1B no no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 60.318 53.913 3 3.7694E-07 2 38547 20150910_Q1_SA_NiHu_Masterprac_group10_B 105.46 83.405 9499700 413750 4633700 841300 0 0 3610900 3616 824;846;619 3576 15857;15858;15859;15860 10536;10537 10537 2 ITKMPCQSLQPEPINTPTHTK Unmodified 2420.2192 0.21920061 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 3 111.83 103.93 3;4 7.0785E-46 9 68290 20150910_Q1_SA_NiHu_Masterprac_group13_B 111.45 93.431 404060000 54029000 81383000 60845000 27317000 18786000 161700000 3617 919;920 3577 15861;15862;15863;15864;15865;15866;15867;15868;15869;15870;15871;15872 10538;10539;10540;10541;10542;10543;10544;10545;10546 10538 9 ITKMPCQSLQPEPINTPTHTK Oxidation (M) 2436.2141 0.21411524 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 1 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 98.155 88.559 4 0.025566 1 60783 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.244 38.528 26097000 4785900 5792100 4958400 0 4974900 5586100 3618 919;920 3577 15873;15874;15875;15876;15877 10547 10547 105 1 ITKMPCQSLQPEPINTPTHTKQQLK Unmodified 2917.5154 0.51538263 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching 1 2 2 112.37 102.42 4;5 7.8054E-05 2 68968 20150910_Q1_SA_NiHu_Masterprac_group10_C 55.302 49.31 15686000 3449400 0 8013900 4223100 0 0 3619 919;920 3578 15878;15879;15880;15881;15882 10548;10549 10549 1 ITKPNVYHESK Unmodified 1314.6932 0.6932003 593 P78563-2;P78563-3;P78563-4;G5E9B4;P78563 ADARB1 Double-stranded RNA-specific editase 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 49.198 42.41 3 0.021966 1 35673 20150910_Q1_SA_NiHu_Masterprac_group15_C 54.784 22.625 2611100 650900 414150 851260 0 466320 228430 3620 593 3579 15883;15884;15885;15886;15887 10550 10550 1 ITLDNAYMEK Unmodified 1196.5747 0.57472465 837 P14618;H3BQ34;E9PF79;H3BTN5;P14618-2;H3BT25;H3BUW1;H3BTJ2;P14618-3 PKM Pyruvate kinase PKM;Pyruvate kinase yes no 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 122.04 112.01 2 0.014544 2 72946 20150910_Q1_SA_NiHu_Masterprac_group13_B 68.355 49.399 13341000 0 0 4515000 2078200 898370 5849100 3621 837 3580 15888;15889;15890;15891 10551;10552 10551 2 ITLQDKQNMVK Unmodified 1316.7122 0.71222118 78 B3KXH8;Q9Y5X1 SNX9 Sorting nexin-9 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 81.597 75.765 3 0.0041252 1 52293 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.07 34.693 4522400 0 0 0 342870 903950 3275500 3622 78 3581 15892;15893;15894 10553 10553 1 ITLQDVVSHSK Unmodified 1225.6667 0.6666512 929 P46940;H0YLE8 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 125.18 118.84 2;3 3.5486E-05 6 77036 20150910_Q1_SA_NiHu_Masterprac_group10_C 101.39 77.304 17077000 3235200 2332900 0 1241200 1259300 9008600 3623 929 3582 15895;15896;15897;15898;15899;15900;15901;15902 10554;10555;10556;10557;10558;10559 10559 6 ITLQDVVSHSKK Unmodified 1353.7616 0.76161421 929 P46940;H0YLE8 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 107.05 103.59 3 0.00093717 1 70793 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.871 58.542 1891500 0 0 0 0 0 1891500 3624 929 3583 15903 10560 10560 1 ITLSSSSEEYQK Unmodified 1370.6565 0.65654002 1480 Q9H0J9 PARP12 Poly [ADP-ribose] polymerase 12 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 81.187 79.832 2 0.013365 2 54868 20150910_Q1_SA_NiHu_Masterprac_group10_B 56.205 56.205 2136700 0 720010 0 319550 0 1097100 3625 1480 3584 15904;15905;15906 10561;10562 10561 2 ITLTSRNVK Unmodified 1030.6135 0.61349341 979 P60866;P60866-2;E5RJX2;E5RIP1 RPS20 40S ribosomal protein S20 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 60.353 53.949 2 0.038068 1 39608 20150910_Q1_SA_NiHu_Masterprac_group10_C 77.533 27.18 4115000 1577600 1095700 972100 0 0 469580 3626 979 3585 15907;15908;15909;15910 10563 10563 1 ITPEFSK Unmodified 820.43307 0.43306943 101 Q5TDE7;Q5TDE8;B4DLZ9;Q5VTB9;F8WB55 RNF220 E3 ubiquitin-protein ligase RNF220 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 68.218 67.064 2 0.040654 1 46698 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.229 27.826 1291900 0 0 0 0 0 1291900 3627 101 3586 15911 10564 10564 1 ITQDLMAK Unmodified 918.48445 0.48445308 522 Q12872;F5H6B8 SFSWAP Splicing factor, suppressor of white-apricot homolog yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 74.789 69.133 2 3.0597E-09 1 48062 20150910_Q1_SA_NiHu_Masterprac_group15_B 122.19 61.505 12980000 1059500 1843000 0 1612900 4002700 4461500 3628 522 3587 15912;15913;15914;15915;15916 10565 10565 1 ITQQGTDPLVLAVQSK Unmodified 1696.9359 0.93594977 423 Q8N556;E9PDT7 AFAP1 Actin filament-associated protein 1 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 134.54 126.26 2 4.0419E-65 4 86439 20150910_Q1_SA_NiHu_Masterprac_group10_B 130.64 97.632 84340000 0 38689000 27596000 9797900 8026100 230650 3629 423 3588 15917;15918;15919;15920;15921 10566;10567;10568;10569 10569 4 ITRLTYEIEDEK Unmodified 1508.7722 0.77223848 840 P15924;P15924-2;H7BYR0 DSP Desmoplakin yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 109.8 102.53 3 4.1518E-08 4 67722 20150910_Q1_SA_NiHu_Masterprac_group10_B 106.54 82.118 14858000 1427900 2626000 3457700 2894800 0 4451300 3630 840 3589 15922;15923;15924;15925;15926 10570;10571;10572;10573 10573 4 ITRNQCQLCR Unmodified 1347.65 0.64997205 821 P10827-2;P10827-4;P10827-3;P10827 THRA Thyroid hormone receptor alpha yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 42.49 37.639 3 0.0089324 1 26606 20150910_Q1_SA_NiHu_Masterprac_group10_B 79.148 55.68 2096100 192500 533500 892010 0 0 478100 3631 821 3590 15927;15928;15929;15930 10574 10574 1 ITRYTEDCFSDSNCVPNKSK Unmodified 2420.0737 0.073658588 1492 Q9H582-2;Q9H582 ZNF644 Zinc finger protein 644 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 2 91.371 84.196 3;4 0.0001675 5 64041 20150910_Q1_SA_NiHu_Masterprac_group13_C 77.959 77.959 28031000 8082800 3194800 3868600 3186300 4660300 5038600 3632 1492 3591 15931;15932;15933;15934;15935;15936;15937;15938 10575;10576;10577;10578;10579 10576 5 ITSEAIGQLHR Unmodified 1223.6622 0.66223452 1618 Q9UNY4;Q9UNY4-2 TTF2 Transcription termination factor 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 91.318 82.369 2 0.029071 1 56476 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.727 36.182 1305500 0 0 0 0 432580 872960 3633 1618 3592 15939;15940 10580 10580 1 ITTSHPRVPSLTTVPQTQGQTTAQK Unmodified 2676.4195 0.41949164 1456 Q9BW19 KIFC1 Kinesin-like protein KIFC1 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 3 3 112.69 105.12 3;4 1.4693E-12 9 72417 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.358 57.607 50314000 0 10513000 14357000 5710500 6212300 13522000 3634 1456 3593 15941;15942;15943;15944;15945;15946;15947;15948;15949;15950;15951 10581;10582;10583;10584;10585;10586;10587;10588;10589 10586 7 ITVAECIETQSK Unmodified 1377.681 0.68098063 1160 Q9ULU4-14;Q2HXV3;Q9ULU4-12;Q9ULU4-13;B7ZM62;H7C4X9;Q9ULU4-8;Q2HXV1;Q9ULU4-9;F8WAN7;Q9ULU4-5;Q9ULU4-10;Q9ULU4-7;E7ETU8;F5H0X3;Q9ULU4;Q9ULU4-11;Q5TH12 ZMYND8 Protein kinase C-binding protein 1 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 2 1 111.07 100.56 2 0.0018624 5 72114 20150910_Q1_SA_NiHu_Masterprac_group15_C 84.365 53.476 5121300 1221700 969010 0 0 1260500 1670100 3635 1160 3594 15952;15953;15954;15955;15956 10590;10591;10592;10593;10594 10592 5 ITVDDKHYQK Unmodified 1245.6354 0.63535107 289 CON__P02663 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 2 1 46.017 40.084 2;3 0.0027307 3 32348 20150910_Q1_SA_NiHu_Masterprac_group13_C 99.815 75.744 5749900 827040 0 4380000 0 0 542910 + 3636 289 3595 15957;15958;15959;15960 10595;10596;10597 10595 3 ITVEDDVGGVQGK Unmodified 1315.662 0.66195975 1369 Q96B01-2;Q96B01;Q96B01-3;B4DUS5;F5H1Y0;H0YGT5 RAD51AP1 RAD51-associated protein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 97.884 89.855 2 3.1834E-47 7 60796 20150910_Q1_SA_NiHu_Masterprac_group13_B 130.15 100.85 17045000 2479900 4343400 2429600 1167200 2190100 4434300 3637 1369 3596 15961;15962;15963;15964;15965;15966 10598;10599;10600;10601;10602;10603;10604 10600 7 ITVVPSAK Unmodified 813.496 0.49600404 1471 Q9BZE4 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 78.387 70.876 2 0.035201 1 49214 20150910_Q1_SA_NiHu_Masterprac_group13_B 69.628 43.689 10138000 1324300 1684000 1432800 1215200 2209700 2271900 3638 1471 3597 15967;15968;15969;15970;15971;15972 10605 10605 1 IVADFSASVKKPHTLLQR Unmodified 2009.1422 0.14219457 129 F8W720;B4DUT7;P49915 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 2 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 2 1 130.19 112.83 4;5 2.4772E-07 4 80884 20150910_Q1_SA_NiHu_Masterprac_group13_C 93.106 79.13 16379000 4014700 0 11103000 0 1261200 0 3639 129 3598 15973;15974;15975;15976 10606;10607;10608;10609 10607 4 IVAERPGTNSTGPAPMAPPRAPGPLSK Unmodified 2668.4119 0.41190384 1076 Q13263-2;Q13263 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 2 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 125.81 114.43 4 0.00075372 3 75732 20150910_Q1_SA_NiHu_Masterprac_group10_C 46.145 40.47 21958000 6183600 1668100 6330500 0 5114500 2661100 3640 1076 3599 15977;15978;15979;15980;15981 10610;10611;10612 10612 3 IVETEAYLGPEDEAAHSR Unmodified 1985.933 0.93304923 594 G5E9E2;Q5J9I4;P29372-2;P29372;A2IDA3 MPG DNA-3-methyladenine glycosylase yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 2 117.36 107.96 2;3 0.00028615 8 70869 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.601 55.244 54214000 4958000 10195000 3604800 2035300 7795700 25625000 3641 594 3600 15982;15983;15984;15985;15986;15987;15988;15989;15990;15991 10613;10614;10615;10616;10617;10618;10619;10620 10619 7 IVETEAYLGPEDEAAHSRGGR Unmodified 2256.0771 0.077087707 594 G5E9E2;Q5J9I4;P29372-2;P29372;A2IDA3 MPG DNA-3-methyladenine glycosylase yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 2 1 1 3 106.06 98.306 3;4 8.6146E-06 3 67038 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.994 54.569 38044000 0 6232000 2750500 1597000 3061100 24404000 3642 594 3601 15992;15993;15994;15995;15996;15997;15998;15999;16000 10621;10622;10623 10621 3 IVGPQVVIFCMHHQR Unmodified 1819.9338 0.93379847 1351 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 133.46 128.5 4 5.9241E-14 1 88559 20150910_Q1_SA_NiHu_Masterprac_group15_B 105.65 86.664 5071900 0 0 0 0 0 5071900 3643 1351 3602 16001 10624 10624 1 IVKEAHEPLAVADAK Unmodified 1589.8777 0.8777066 1640 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 82.291 73.937 3 0.0012058 1 51110 20150910_Q1_SA_NiHu_Masterprac_group13_B 69.431 36.126 2156200 420000 0 959930 776240 0 0 3644 1640 3603 16002;16003;16004 10625 10625 1 IVKEAYPDHTQFEK Unmodified 1703.8519 0.85188578 1570 Q9P016;Q9P016-2 THYN1 Thymocyte nuclear protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 2 2 1 2 2 84.012 75.695 3;4 0.00043609 8 52881 20150910_Q1_SA_NiHu_Masterprac_group10_C 87.863 47.652 44402000 4799200 7136400 9297600 2025600 7309200 13834000 3645 1570 3604 16005;16006;16007;16008;16009;16010;16011;16012;16013;16014;16015;16016 10626;10627;10628;10629;10630;10631;10632;10633 10633 8 IVLNSIEQYQAHVSGFKHKNQSPK Unmodified 2751.4456 0.44564681 184 B7Z367;Q9UL40;D6RJ07;Q9UL40-2;B7Z4J8;B7Z4N4 ZNF346 Zinc finger protein 346 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 2 1 1 128.59 117.26 4;5;6 1.6723E-08 4 80978 20150910_Q1_SA_NiHu_Masterprac_group13_C 64.522 42.478 16370000 2453100 0 7886200 1180000 0 4850300 3646 184 3605 16017;16018;16019;16020;16021 10634;10635;10636;10637 10635 4 IVLTNPVCTEVGEK Unmodified 1557.8072 0.80724378 910 Q2VIR3;P41091 EIF2S3L;EIF2S3 Putative eukaryotic translation initiation factor 2 subunit 3-like protein;Eukaryotic translation initiation factor 2 subunit 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.82 131.21 2 8.0836E-08 1 84659 20150910_Q1_SA_NiHu_Masterprac_group10_B 98 67.516 3599400 0 3599400 0 0 0 0 3647 910 3606 16022 10638 10638 1 IVPVVSQSECK Unmodified 1244.6435 0.64347291 391 Q76L83-2;E7EWD6;Q76L83 ASXL2 Putative Polycomb group protein ASXL2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 87.061 79.816 2 0.0044484 1 54918 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.843 60.923 3925800 239660 1153900 0 0 689920 1842300 3648 391 3607 16023;16024;16025;16026 10639 10639 1 IVRASNGDAWVEAHGK Unmodified 1708.8645 0.86451616 187 B7Z4V2;P38646;D6RJI2 HSPA9 Stress-70 protein, mitochondrial yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 80.319 73.367 4 0.0035973 1 50899 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.476 50.73 4656700 0 1425200 1308200 0 0 1923300 3649 187 3608 16027;16028;16029 10640 10640 1 IVTADRAATGN Unmodified 1087.5622 0.56218613 1412 Q96PU8-3;Q96PU8;H0YG47 QKI Protein quaking yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 49.473 38.218 2 0.011151 1 31171 20150910_Q1_SA_NiHu_Masterprac_group13_C 77.597 41.215 1017300 0 0 898210 0 119110 0 3650 1412 3609 16030;16031 10641 10641 1 IVVEAPAKEMEK Unmodified 1342.7166 0.71663786 1655 Q9Y5N6;H3BT22 ORC6 Origin recognition complex subunit 6 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 91.664 85.647 3 0.028202 1 58746 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.568 29.943 5811300 953130 151880 0 2022400 1432300 1251700 3651 1655 3610 16032;16033;16034;16035;16036 10642 10642 1 IVVGHAIHNDFK Unmodified 1348.7252 0.72516913 1509 Q9H9L3 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 3 3 88.289 80.102 2;3 2.7229E-50 11 55135 20150910_Q1_SA_NiHu_Masterprac_group15_B 132.32 101.75 58584000 1939800 4481100 2920300 2613700 12790000 33839000 3652 1509 3611 16037;16038;16039;16040;16041;16042;16043;16044;16045;16046 10643;10644;10645;10646;10647;10648;10649;10650;10651;10652;10653 10646 11 IVVQKYHTINGHNCEVK Unmodified 2038.0418 0.041828595 371;955 E7EWI9;E7ERJ4;P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 70.497 64.13 4 0.0017081 2 51968 20150910_Q1_SA_NiHu_Masterprac_group13_C 59.673 41.777 4705700 0 966560 2227500 1511600 0 0 3653 371;955 3612 16047;16048;16049 10654;10655 10655 2 IWGAYDGKFEK Unmodified 1312.6452 0.64518747 983 P61964 WDR5 WD repeat-containing protein 5 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 118.7 110.46 3 0.0094662 3 79487 20150910_Q1_SA_NiHu_Masterprac_group13_C 65.842 23.758 14226000 0 1404100 3402700 1969100 578030 6871700 3654 983 3613 16050;16051;16052;16053;16054 10656;10657;10658 10656 3 IWHHTFYNELR Unmodified 1514.7419 0.74188183 164 F5H0N0;B4E335;P63261;P60709;I3L3I4;G5E9R0;I3L3R2;E7EVS6;I3L3I0;I3L1U9;E7EQV5;Q5T8M8;A6NL76;B4DW52;P68133;P68032;C9JUM1;C9JZR7;I3L4N8;F5GYT4;Q6S8J3;P0CG38;A5A3E0;P0CG39;Q9BYX7 ACTG1;ACTB;ACTA1;ACTC1;POTEE;POTEI;POTEF;POTEJ;POTEKP Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;POTE ankyrin domain family member E;POTE ankyrin domain family member I;POTE ankyrin domain family member F;POTE ankyrin domain family member J;Putative beta-actin-like protein 3 yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 116.55 106.82 3 2.1772E-42 3 72916 20150910_Q1_SA_NiHu_Masterprac_group15_B 135.8 80.534 27981000 0 0 4363400 2406100 6075800 15136000 3655 164 3614 16055;16056;16057;16058 10659;10660;10661 10660 3 IYCKPHFNQLFK Unmodified 1593.8126 0.81260393 107 F8VQE1;Q9UHB6-2;B4DN52;Q9UHB6;Q9UHB6-4;F8VS07;Q9UHB6-3 LIMA1 LIM domain and actin-binding protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 120 118.18 3 0.011541 2 80406 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.885 36.336 4391300 0 508110 0 483300 0 3399900 3656 107 3615 16059;16060;16061 10662;10663 10662 2 IYEAQPEISR Unmodified 1204.6088 0.60880197 728 O60287 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 89.664 82.224 2 0.0060443 3 56361 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.014 52.144 7864700 0 1501600 726610 605810 1516100 3514500 3657 728 3616 16062;16063;16064;16065;16066 10664;10665;10666 10666 3 IYEISNRWK Unmodified 1207.635 0.63495714 1030 Q01780 EXOSC10 Exosome component 10 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 2 2 2 2 1 110.01 101.02 2;3 0.0067612 3 73956 20150910_Q1_SA_NiHu_Masterprac_group13_C 91.069 91.069 18345000 1096500 3645100 4625500 2473600 660440 5843700 3658 1030 3617 16067;16068;16069;16070;16071;16072;16073;16074;16075;16076 10667;10668;10669 10668 3 IYEYVESR Unmodified 1057.508 0.50802529 1342 Q8WWY3;E7EVX8;Q8WWY3-2;E7ESA8;E7EU94;E7ESX0;Q8WWY3-3;E7EN72 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 80.912 79.457 2 0.003009 1 54709 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.139 64.752 1596100 0 0 0 0 0 1596100 3659 1342 3618 16077 10670 10670 0 IYHGNCNTPIPED Unmodified 1528.6616 0.66164217 134 Q8NBI6-3;B4DVL3;Q8NBI6-2;Q8NBI6 XXYLT1 Xyloside xylosyltransferase 1 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 96.726 88.713 2 0.0022326 3 65428 20150910_Q1_SA_NiHu_Masterprac_group15_C 66.393 53.586 6524700 760400 853200 773860 1056700 1956800 1123800 3660 134 3619 16078;16079;16080;16081;16082;16083 10671;10672;10673 10672 3 IYIKHPHLFK Unmodified 1294.755 0.75501269 667 H7C1J2;H7C1M5;Q9H147 DNTTIP1 Deoxynucleotidyltransferase terminal-interacting protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 101.69 92.094 3 0.0029187 1 62953 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.358 82.782 2809900 0 0 0 0 270650 2539200 3661 667 3620 16084;16085 10674 10674 1 IYLCGFSGRK Unmodified 1199.6121 0.61211321 1351 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 103.57 101.24 3 0.025347 1 66950 20150910_Q1_SA_NiHu_Masterprac_group10_B 51.436 18.685 1604000 0 509060 0 0 0 1095000 3662 1351 3621 16086;16087 10675 10675 1 IYLLECK Unmodified 937.49429 0.49428948 295 CON__P06868 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 2 1 126.51 115.34 2 0.0074562 3 79964 20150910_Q1_SA_NiHu_Masterprac_group15_C 94.262 16.513 46997000 28914000 0 0 4966200 9547100 3569500 + 3663 295 3622 16088;16089;16090;16091;16092 10676;10677;10678 10677 3 IYLLECKTGNGQTYRGTTAETK Unmodified 2503.2377 0.23768745 295 CON__P06868 yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 112.51 102.08 4 0.00021601 1 68218 20150910_Q1_SA_NiHu_Masterprac_group10_C 57.616 49.981 13671000 10156000 0 1245900 2269900 0 0 + 3664 295 3623 16093;16094;16095 10679 10679 1 IYPVGYFTK Unmodified 1086.575 0.57498264 601 Q2L6G8;Q15517;G8JLG2 CDSN Corneodesmosin yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 133.17 132.86 2 0.0065883 2 86291 20150910_Q1_SA_NiHu_Masterprac_group13_B 91.265 63.494 57304000 0 44136000 0 13168000 0 0 3665 601 3624 16096;16097 10680;10681 10680 2 IYQYDLR Unmodified 969.49198 0.4919813 585 Q8NHV4-2;Q8NHV4;G3V3F1 NEDD1 Protein NEDD1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 103.52 93.841 2 0.011502 2 64087 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.906 47.375 7432100 0 1186600 2013900 0 851100 3380600 3666 585 3625 16098;16099;16100;16101 10682;10683 10683 2 IYQYVINKER Unmodified 1324.7139 0.71393574 852 P17812;B7Z9C4 CTPS1 CTP synthase 1 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 92.499 83.727 3 0.0090691 4 62230 20150910_Q1_SA_NiHu_Masterprac_group15_C 77.533 38.78 24620000 0 0 3135100 1724000 6977500 12783000 3667 852 3626 16102;16103;16104;16105 10684;10685;10686;10687 10687 4 IYSFTDNAPSPSIGGSSR Unmodified 1854.8748 0.87480607 701 O15014 ZNF609 Zinc finger protein 609 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.86 131.25 2 0.0015609 2 84702 20150910_Q1_SA_NiHu_Masterprac_group10_B 60.093 39.814 5075700 0 5075700 0 0 0 0 3668 701 3627 16106 10688;10689 10689 2 KAAAAAWEEPSSGNGTAR Unmodified 1772.8442 0.84417465 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 2 74.298 66.524 2;3 1.0091E-32 12 46630 20150910_Q1_SA_NiHu_Masterprac_group13_B 110.34 90.254 729210000 121940000 127730000 97105000 48652000 82139000 251640000 3669 1575 3628 16107;16108;16109;16110;16111;16112;16113;16114;16115;16116;16117;16118;16119;16120;16121;16122;16123 10690;10691;10692;10693;10694;10695;10696;10697;10698;10699;10700;10701 10690 11 KAAAAAWEEPSSGNGTARAGPR Unmodified 2154.0566 0.056627037 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching 2 1 1 1 1 1 76.924 69.333 4 0.028669 2 49003 20150910_Q1_SA_NiHu_Masterprac_group10_C 32.797 12.544 17716000 4885200 2950500 3701100 2761400 1668300 1749800 3670 1575 3629 16124;16125;16126;16127;16128;16129;16130 10702;10703 10703 2 KAAAPAPEEEMDECEQALAAEPK Unmodified 2484.1149 0.1148547 127 P26641;B4DTG2 EEF1G Elongation factor 1-gamma yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 131.54 123.39 3 2.027E-21 3 83787 20150910_Q1_SA_NiHu_Masterprac_group10_B 93.404 73.708 10677000 3774900 6902100 0 0 0 0 3671 127 3630 16131;16132 10704;10705;10706 10705 3 KAACEFSETDVTNTEHHQPSNNDLNTTEK Unmodified 3316.4538 0.45384083 426 E9PFZ0;P38398-4;P38398-2;P38398;E9PFC7;F8W8H7;E7EMP0;E9PH68;E7EWN5;Q3B891;B7ZA85;E7EUM2;P38398-6;E7ETR2;P38398-3 BRCA1 Breast cancer type 1 susceptibility protein yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 95.075 88.879 4 6.6217E-05 5 60155 20150910_Q1_SA_NiHu_Masterprac_group13_B 44.11 40.331 21952000 6935000 4119000 0 3279700 2388400 5230200 3672 426 3631 16133;16134;16135;16136;16137 10707;10708;10709;10710;10711 10707 4 KAACIAEQYHTVLK Unmodified 1630.8501 0.85011165 767 O95235;B4DL79 KIF20A Kinesin-like protein KIF20A yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 97.364 89.744 3 8.4762E-11 6 60647 20150910_Q1_SA_NiHu_Masterprac_group10_C 95.981 60.904 16238000 0 2728700 3568400 3138200 3081800 3720500 3673 767 3632 16138;16139;16140;16141;16142;16143 10712;10713;10714;10715;10716;10717 10717 6 KAADSLQQNLQR Unmodified 1370.7266 0.72662569 1157 Q1ED39;H3BNU8 KNOP1 Lysine-rich nucleolar protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 67.888 60.569 3 1.0238E-50 6 42879 20150910_Q1_SA_NiHu_Masterprac_group10_B 134.13 96.135 30205000 6213100 2000700 3097100 2286700 8137100 8470400 3674 1157 3633 16144;16145;16146;16147;16148;16149;16150 10718;10719;10720;10721;10722;10723 10722 6 KAANLNSIIHRLEK Unmodified 1605.9315 0.93147351 906 P39880-2;P39880;P39880-3;P39880-4;P39880-5;P39880-6 CUX1 Homeobox protein cut-like 1 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 127.86 117.68 4 0.032997 2 79704 20150910_Q1_SA_NiHu_Masterprac_group15_C 39.961 29.968 7767700 0 0 2993800 281340 615060 3877500 3675 906 3634 16151;16152;16153;16154 10724;10725 10725 2 KAANMLQQSGSKNTGAK Unmodified 1732.889 0.88901635 922 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 36.459 31.722 3 0.0063168 1 25389 20150910_Q1_SA_NiHu_Masterprac_group13_C 60.541 35.623 3183700 0 0 2390800 792920 0 0 3676 922 3635 16155;16156 10726 10726 1 KAAQEQVLNASR Unmodified 1313.7052 0.70516197 1426 Q99543;Q99543-2 DNAJC2 DnaJ homolog subfamily C member 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 2 52.943 46.967 2;3 6.9552E-05 8 33691 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.779 51.871 13704000 1738300 1944200 2893700 1192500 3184300 2751300 3677 1426 3636 16157;16158;16159;16160;16161;16162;16163;16164;16165;16166 10727;10728;10729;10730;10731;10732;10733;10734 10731 7 KAASLGSSQSSRTYAGGTASATK Unmodified 2186.0927 0.092737771 375 G5E9D3;P20810-5;E7ESM9;P20810-7;P20810-6;B7Z468;F8W7E0;H0YA91;E9PSG1;D6RGF7;D6RBR1;E7EN75;H0Y944 CAST Calpastatin yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 55.223 48.998 4 7.3642E-07 4 36240 20150910_Q1_SA_NiHu_Masterprac_group10_C 60.761 60.761 12680000 2865800 1923100 3512800 456890 2490400 1431000 3678 375 3637 16167;16168;16169;16170;16171;16172 10735;10736;10737;10738 10738 4 KAAVAVVPLVSEDK Unmodified 1424.8239 0.82388012 97 B4DLG2;O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1 124.72 114.34 2;3 4.0784E-05 5 75630 20150910_Q1_SA_NiHu_Masterprac_group10_C 90.689 70.582 44852000 19879000 4446100 8684500 3058400 3697100 5086600 3679 97 3638 16173;16174;16175;16176;16177;16178;16179 10739;10740;10741;10742;10743 10742 5 KAAVSWLTPAPSK Unmodified 1354.7609 0.76088593 1509 Q9H9L3 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 1 3 117.86 110.41 2;3 0.0010039 6 79396 20150910_Q1_SA_NiHu_Masterprac_group13_C 84.297 46.12 44570000 0 1194800 10445000 8128800 1219600 23582000 3680 1509 3639 16180;16181;16182;16183;16184;16185;16186;16187;16188 10744;10745;10746;10747;10748;10749 10747 6 KAAVSWLTPAPSKK Unmodified 1482.8558 0.85584895 1509 Q9H9L3 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 99.224 91.161 3 2.1984E-12 6 61310 20150910_Q1_SA_NiHu_Masterprac_group10_B 104.41 88.976 23213000 4436000 3795400 2391900 2751400 5474800 4363600 3681 1509 3640 16189;16190;16191;16192;16193;16194 10750;10751;10752;10753;10754;10755 10754 6 KACDELELHQR Unmodified 1397.6721 0.67214728 58 B7Z3Z1;F5H449;Q5BJG6;B7Z293;B0QZE2;Q5VUI0;Q15326;F6UH50;Q2LD45;E7ENI9 ZMYND11 Zinc finger MYND domain-containing protein 11 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 59.558 53.121 3 0.0013686 2 37997 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.463 52.587 2610300 0 213740 579100 256250 741120 820060 3682 58 3641 16195;16196;16197;16198;16199 10756;10757 10756 2 KADCPENATMSLK Unmodified 1463.6748 0.6748494 1509 Q9H9L3 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 76.814 68.316 3 0.0010345 1 53036 20150910_Q1_SA_NiHu_Masterprac_group15_C 82.925 56.942 2280100 0 0 0 0 1125500 1154700 3683 1509 3642 16200;16201 10758 10758 1 KADCPENATMSLKHLTK Unmodified 1942.9605 0.96046673 1509 Q9H9L3 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 89.788 82.744 4 0.003421 1 56513 20150910_Q1_SA_NiHu_Masterprac_group13_B 49.621 36.467 2391800 791850 609320 278470 712130 0 0 3684 1509 3643 16202;16203;16204;16205 10759 10759 1 KADPENIKSEGDGTQDIVDK Unmodified 2158.039 0.038970866 1201 Q5UIP0-2;Q5UIP0 RIF1 Telomere-associated protein RIF1 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 87.578 76.6 3 0.0045477 1 58066 20150910_Q1_SA_NiHu_Masterprac_group15_C 52.318 31.465 2114100 0 0 755240 747370 611450 0 3685 1201 3644 16206;16207;16208 10760 10760 1 KADTEEEFLAFRK Unmodified 1582.7991 0.79912193 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 117.47 114.74 3 0.0058181 1 78267 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.069 68.921 2244300 0 594830 0 0 0 1649500 3686 919;920 3645 16209;16210 10761 10761 1 KADVEEEFLAFRK Unmodified 1580.8199 0.81985737 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 132.53 119.67 3 3.2663E-46 3 78748 20150910_Q1_SA_NiHu_Masterprac_group10_C 128.35 128.35 154370000 27049000 0 59316000 35431000 32573000 0 3687 919;920 3646 16211;16212;16213;16214 10762;10763;10764 10764 2 KADVEEESLALRK Unmodified 1486.7991 0.79912193 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 83.661 74.855 3 0.0063991 2 58851 20150910_Q1_SA_NiHu_Masterprac_group13_C 83.243 45.718 3846700 1072700 0 1104700 0 0 1669200 3688 919;920 3647 16215;16216;16217 10765;10766 10765 2 KAEAVVNTVDISEREK Unmodified 1786.9425 0.94249171 1289 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 90.278 82.583 3 4.9701E-26 4 56306 20150910_Q1_SA_NiHu_Masterprac_group13_B 107.13 88.894 7801000 1467400 980880 1014100 1683700 1594300 1060500 3689 1289 3648 16218;16219;16220;16221;16222;16223 10767;10768;10769;10770 10767 4 KAEGEPQEESPLKSK Unmodified 1655.8366 0.83662965 1563;452 Q9NYF8-2;Q9NYF8;Q9NYF8-4;E9PK09;E9PQN2;E9PKI6;E9PJA7;Q9NYF8-3;E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 51.322 45.364 3 2.9002E-70 5 37798 20150910_Q1_SA_NiHu_Masterprac_group15_C 135.61 110.59 14967000 1956900 1553300 3101800 3060500 2726000 2568900 3690 1563;452 3649 16224;16225;16226;16227;16228;16229 10771;10772;10773;10774;10775 10774 5 KAEGTVFTEEDFQK Unmodified 1627.773 0.77296676 1269 Q86WX3 RPS19BP1 Active regulator of SIRT1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 112.9 103.85 3 0.0003355 7 68573 20150910_Q1_SA_NiHu_Masterprac_group10_B 86.944 69.88 9896200 1425500 1704600 1609300 1132300 866800 3157700 3691 1269 3650 16230;16231;16232;16233;16234;16235 10776;10777;10778;10779;10780;10781;10782 10781 5 KAEPSEVDMNSPK Unmodified 1430.6711 0.67114423 1534 Q9NR30;Q3SWU7 DDX21 Nucleolar RNA helicase 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 58.64 51.98 3 1.1275E-09 9 39122 20150910_Q1_SA_NiHu_Masterprac_group10_C 104.81 87.552 19786000 4087000 2367200 1191900 966780 7703200 3469500 3692 1534 3651 16236;16237;16238;16239;16240;16241;16242 10783;10784;10785;10786;10787;10788;10789;10790;10791 10790 8 KAEPSEVDMNSPKSK Unmodified 1645.7981 0.79813565 1534 Q9NR30;Q3SWU7 DDX21 Nucleolar RNA helicase 2 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 48.439 41.928 3;4 3.0096E-229 7 34056 20150910_Q1_SA_NiHu_Masterprac_group13_C 177.39 154.54 49188000 10766000 6310200 4245800 5498100 16199000 6168900 3693 1534 3652 16243;16244;16245;16246;16247;16248;16249 10792;10793;10794;10795;10796;10797;10798 10793 7 KAGPGSLELCGLPSQK Unmodified 1640.8556 0.85559095 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 4 2 126.18 115.52 2;3 8.1871E-251 10 79392 20150910_Q1_SA_NiHu_Masterprac_group15_C 178.47 85.692 329390000 98388000 18066000 58059000 19696000 91395000 43785000 3694 1111 3653 16250;16251;16252;16253;16254;16255;16256;16257;16258;16259;16260;16261;16262;16263 10799;10800;10801;10802;10803;10804;10805;10806;10807;10808 10805 10 KAHLMEIQVNGGTVAEK Unmodified 1823.9564 0.95636763 905 P39023;G5E9G0;B5MCW2;H7C422;H7C3M2 RPL3 60S ribosomal protein L3 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 3 108.67 101.14 3;4 0.00030986 5 67053 20150910_Q1_SA_NiHu_Masterprac_group13_B 70.784 40.676 18969000 2503400 445880 4740000 1606100 0 9673500 3695 905 3654 16264;16265;16266;16267;16268;16269;16270;16271 10809;10810;10811;10812;10813 10809 4 KAIACLLFGGSRK Unmodified 1419.802 0.80203924 892 P33992;B1AHB1;E7EQY5 MCM5 DNA replication licensing factor MCM5 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 128.12 116.86 3 8.2027E-15 3 82016 20150910_Q1_SA_NiHu_Masterprac_group15_B 108.32 91.705 61695000 6856600 0 26287000 3164200 10772000 14616000 3696 892 3655 16272;16273;16274;16275;16276 10814;10815;10816 10815 3 KAIEDEGGNPDEIEITSEGNK Unmodified 2244.0394 0.039364797 1137 Q15424;F5H1L1;F5H0H3;B7Z959 SAFB Scaffold attachment factor B1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 108.36 99.533 3 2.5197E-06 6 67211 20150910_Q1_SA_NiHu_Masterprac_group10_C 66.636 48.741 11565000 2129900 2505500 1091400 1203600 2218500 2416100 3697 1137 3656 16277;16278;16279;16280;16281;16282 10817;10818;10819;10820;10821;10822 10821 6 KAIEDEGGNPDEIEITSEGNKK Unmodified 2372.1343 0.13432781 1137 Q15424;F5H1L1;F5H0H3;B7Z959 SAFB Scaffold attachment factor B1 yes no 0 0 2 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 97.591 89.578 3 2.3887E-05 4 65871 20150910_Q1_SA_NiHu_Masterprac_group15_C 62.099 54.218 13201000 3400300 1452500 2073400 1656700 2430300 2187700 3698 1137 3657 16283;16284;16285;16286;16287;16288 10823;10824;10825;10826 10825 4 KAIEELLKEAK Unmodified 1270.7497 0.74965254 1637 Q9Y2S0-2 POLR1D DNA-directed RNA polymerases I and III subunit RPAC2 yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 1 2 110.9 103.41 2;3 9.5527E-08 5 68148 20150910_Q1_SA_NiHu_Masterprac_group10_B 111.5 60.705 34407000 1405100 9024600 10160000 2261500 0 11556000 3699 1637 3658 16289;16290;16291;16292;16293;16294;16295;16296 10827;10828;10829;10830;10831 10830 4 KAIPSSVRITR Unmodified 1226.7459 0.74590457 42 A8MTM6;Q15398;Q15398-1;G3V4E5 DLGAP5 Disks large-associated protein 5 yes no 0 0 2 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 70.269 63.11 3 0.015819 3 44085 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.887 37.203 24575000 0 4071800 5121600 3429900 5143900 6808200 3700 42 3659 16297;16298;16299;16300;16301 10832;10833;10834 10833 3 KAISSTEAVLNNRFIK Unmodified 1790.005 0.0050323835 1196 Q5T8P6-5;Q5T8P6-4;Q5T8P6-3;Q5T8P6-2;Q5T8P6 RBM26 RNA-binding protein 26 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 126.75 117.27 3 0.0065188 3 77800 20150910_Q1_SA_NiHu_Masterprac_group10_B 68.168 49.754 19269000 7243700 1042300 6478800 1057200 2125300 1321500 3701 1196 3660 16302;16303;16304;16305;16306;16307 10835;10836;10837 10836 2 KALAAAGYDVEK Unmodified 1234.6558 0.65575216 818;843 P16403;Q02539;P22492;P10412;P16402 HIST1H1C;HIST1H1A;HIST1H1T;HIST1H1E;HIST1H1D Histone H1.2;Histone H1.1;Histone H1t;Histone H1.4;Histone H1.3 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 1 2 2 2 2 76.466 68.553 2;3 1.6061E-96 12 47878 20150910_Q1_SA_NiHu_Masterprac_group15_B 148.89 80.535 76203000 19206000 4488800 3676700 4634200 27945000 16252000 3702 843;818 3661 16308;16309;16310;16311;16312;16313;16314;16315;16316;16317;16318;16319;16320 10838;10839;10840;10841;10842;10843;10844;10845;10846;10847;10848;10849 10842 12 KALAAAGYDVEKNNSR Unmodified 1705.8747 0.87474649 818;843 P16403;Q02539;P22492;P10412;P16402 HIST1H1C;HIST1H1A;HIST1H1T;HIST1H1E;HIST1H1D Histone H1.2;Histone H1.1;Histone H1t;Histone H1.4;Histone H1.3 no no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 3 2 67.142 59.362 2;3;4 5.5896E-118 9 42076 20150910_Q1_SA_NiHu_Masterprac_group10_C 147.75 125.26 140330000 47106000 8421000 9060500 6713700 47396000 21633000 3703 843;818 3662 16321;16322;16323;16324;16325;16326;16327;16328;16329;16330;16331;16332;16333;16334;16335 10850;10851;10852;10853;10854;10855;10856;10857;10858 10856 8 KALAAGGYDVEK Unmodified 1220.6401 0.6401021 842 P16401 HIST1H1B Histone H1.5 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 69.812 64.217 3 3.2404E-12 4 44883 20150910_Q1_SA_NiHu_Masterprac_group15_B 108.72 67.989 10503000 2114400 1170800 0 727100 2850200 3641000 3704 842 3663 16336;16337;16338;16339;16340 10859;10860;10861;10862 10859 4 KALAAGGYDVEKNNSR Unmodified 1691.8591 0.85909643 842 P16401 HIST1H1B Histone H1.5 yes yes 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 60.635 53.789 3 3.707E-26 7 44120 20150910_Q1_SA_NiHu_Masterprac_group15_C 108.63 84.551 34186000 8759400 3004200 3986800 4432100 8530800 5472800 3705 842 3664 16341;16342;16343;16344;16345;16346;16347 10863;10864;10865;10866;10867;10868;10869 10865 7 KALDQFVNFSEQKEK Unmodified 1809.9261 0.92611336 1625 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 120.94 119.15 3 0.0062697 2 80988 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.326 45.905 2729800 0 596910 0 712350 0 1420600 3706 1625 3665 16348;16349;16350 10870;10871 10870 2 KALEQLNGFELAGRPMK Unmodified 1901.0193 0.019302239 334 H0Y4X3;E1P5S2;G3XAC6;Q14498-3;Q14498-2;Q14498 RBM39 RNA-binding protein 39 yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 1 2 2 131.78 126.42 3;4 7.0172E-209 7 84659 20150910_Q1_SA_NiHu_Masterprac_group13_B 161.48 135.18 346550000 0 100780000 102350000 139340000 4080700 0 3707 334 3666 16351;16352;16353;16354;16355;16356;16357;16358 10872;10873;10874;10875;10876;10877;10878 10872 7 KALEQLNGFELAGRPMK Oxidation (M) 1917.0142 0.014216861 334 H0Y4X3;E1P5S2;G3XAC6;Q14498-3;Q14498-2;Q14498 RBM39 RNA-binding protein 39 yes no 0 1 2 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 130.53 120.76 3 1.2786E-06 2 77063 20150910_Q1_SA_NiHu_Masterprac_group10_C 91.14 56.212 24891000 4711100 2165300 0 0 2142600 15872000 3708 334 3666 16359;16360;16361;16362 10879;10880 10880 30 2 KALGGDVSDQSLESHSQK Unmodified 1884.9177 0.91773352 1601 Q9UKJ3;Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 2 70.453 63.224 3;4 5.2365E-33 6 49805 20150910_Q1_SA_NiHu_Masterprac_group15_C 111.65 101.5 24492000 5377500 4376100 3944300 2584700 4146600 4062400 3709 1601 3667 16363;16364;16365;16366;16367;16368;16369;16370;16371;16372 10881;10882;10883;10884;10885;10886 10884 6 KANGPNYIQPQK Unmodified 1356.715 0.71499837 27 F5H101;Q76FK4-2;Q76FK4-4;A6NJK7;Q76FK4;F8WE42;Q76FK4-3 NOL8 Nucleolar protein 8 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 2 2 2 1 2 1 56.407 49.032 2;3 0.0019946 3 40149 20150910_Q1_SA_NiHu_Masterprac_group13_C 67.385 44.357 18987000 958890 3317400 6112400 1547500 2767800 4282900 3710 27 3668 16373;16374;16375;16376;16377;16378;16379;16380;16381;16382 10887;10888;10889 10887 3 KANIRNMSVIAHVDHGK Unmodified 1889.0054 0.0053835095 833 P13639;F5H370;B4DPU3;B4DMC6 EEF2 Elongation factor 2 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 79.073 70.802 4 0.027931 1 50244 20150910_Q1_SA_NiHu_Masterprac_group10_C 37.477 24.985 1675700 1675700 0 0 0 0 0 3711 833 3669 16383 10890 10890 1 KANNSQEPSPQLASSVASTR Unmodified 2071.0294 0.029409233 405 H0Y8Y3;F5H7Y0;E9PBF5;Q96HC4-4;Q96HC4 PDLIM5 PDZ and LIM domain protein 5 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 96.059 88.096 3 5.4369E-05 6 60249 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.853 71.853 14384000 3448100 1727600 2494100 1600700 2839600 2273800 3712 405 3670 16384;16385;16386;16387;16388;16389 10891;10892;10893;10894;10895;10896 10893 6 KAPAGQEEPGTPPSSPLSAEQLDR Unmodified 2461.2085 0.20849581 494 Q68DM5;F5GYA2;P13051-2;P13051 DKFZp781L1143;UNG Uracil-DNA glycosylase yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 127.29 113.27 3 0.0015458 4 75846 20150910_Q1_SA_NiHu_Masterprac_group10_C 48.852 27.381 13993000 3520900 0 3878600 0 3480300 3112900 3713 494 3671 16390;16391;16392;16393 10897;10898;10899;10900 10900 4 KAPGCVLSNPDQK Unmodified 1412.7082 0.70819844 563 P08651-4;P08651-5;P08651-3;P08651-2;P08651;F8W9H9 NFIC Nuclear factor 1 C-type yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 63.915 56.954 3 0.00089944 4 40420 20150910_Q1_SA_NiHu_Masterprac_group10_B 81.278 57.554 10944000 1344100 2571100 2505000 1569600 2729000 225180 3714 563 3672 16394;16395;16396;16397;16398;16399 10901;10902;10903;10904 10904 4 KAPGCVLSNPDQKGK Unmodified 1597.8246 0.82462518 563 P08651-4;P08651-5;P08651-3;P08651-2;P08651;F8W9H9 NFIC Nuclear factor 1 C-type yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 3 2 52.8 45.819 3;4 1.4933E-14 13 22233 20150910_Q1_SA_NiHu_Masterprac_group10_C 97.2 76.492 231770000 19831000 34903000 50008000 33850000 33394000 59784000 3715 563 3673 16400;16401;16402;16403;16404;16405;16406;16407;16408;16409;16410;16411;16412;16413;16414 10905;10906;10907;10908;10909;10910;10911;10912;10913;10914;10915;10916;10917 10917 13 KAPIQTYVLGANNQETVK Unmodified 1973.0582 0.058190166 1220 Q69YN2 CWF19L1 CWF19-like protein 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 119.56 116.83 3 0.00071148 2 75386 20150910_Q1_SA_NiHu_Masterprac_group10_B 76.761 66.848 1740500 0 991820 0 0 0 748640 3716 1220 3674 16415;16416 10918;10919 10919 2 KAQIAIDIK Unmodified 998.61243 0.61243078 527 F5H7E2;P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 90.406 88.449 2 0.037558 1 60602 20150910_Q1_SA_NiHu_Masterprac_group15_B 104.22 20.607 0 0 0 0 0 0 0 3717 527 3675 16417 10920 10920 1 KAQSLAEQTSDTAGLESSTR Unmodified 2079.008 0.008005089 1066 Q12986;Q12986-2;F5GXD0;Q12986-3 NFX1 Transcriptional repressor NF-X1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 88.554 85.219 3 0.0020055 3 57796 20150910_Q1_SA_NiHu_Masterprac_group10_B 46.786 37.484 4890500 787210 1129900 0 820540 0 2152800 3718 1066 3676 16418;16419;16420;16421 10921;10922;10923 10923 3 KAQTSLESQFTDRYPDNLK Unmodified 2240.1073 0.1073252 1571 Q9P031;F8VNY5 CCDC59 Thyroid transcription factor 1-associated protein 26 yes no 0 0 2 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 128.37 122.94 3 0.00038085 3 84916 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.488 52.528 12667000 9301200 1752200 0 1613400 0 0 3719 1571 3677 16422;16423;16424;16425 10924;10925;10926 10924 3 KASAEGPLLGPEAAPSGEGAGSK Unmodified 2080.0437 0.043662314 266 C9JQV0;Q9BRJ6 C7orf50 Uncharacterized protein C7orf50 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 99.638 94.457 3 0.003346 1 64508 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.16 30.914 3377300 809900 1378800 0 0 0 1188700 3720 266 3678 16426;16427;16428 10927 10927 1 KASFASASAEVGK Unmodified 1251.6459 0.64591575 462 E9PPY3;O43159 RRP8 Ribosomal RNA-processing protein 8 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 2 2 67.878 60.573 2;3 4.1778E-24 14 49313 20150910_Q1_SA_NiHu_Masterprac_group13_C 113.37 80.638 74310000 9437000 11542000 20822000 5821600 8863900 17823000 3721 462 3679 16429;16430;16431;16432;16433;16434;16435;16436;16437;16438;16439;16440;16441;16442 10928;10929;10930;10931;10932;10933;10934;10935;10936;10937;10938;10939;10940;10941 10930 14 KASGDKETPPAEGEGHEAPIAK Unmodified 2218.0866 0.086589761 199 Q5TCZ1-2;F5GZJ6;F5GZ35;B7Z9C6;H0Y507;Q5TCZ1-3;Q5TCZ1;F8WCK5 SH3PXD2A SH3 and PX domain-containing protein 2A yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 54.683 48.627 4 0.018771 1 34846 20150910_Q1_SA_NiHu_Masterprac_group10_B 34.843 24.469 4726900 0 1044700 888610 679250 856560 1257800 3722 199 3680 16443;16444;16445;16446;16447 10942 10942 1 KASGPPVSELITK Unmodified 1325.7555 0.7554662 818;843 P16403;P10412;P16402 HIST1H1C;HIST1H1E;HIST1H1D Histone H1.2;Histone H1.4;Histone H1.3 no no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 1 1 2 1 112.33 100.43 2;3 0.00068112 4 72282 20150910_Q1_SA_NiHu_Masterprac_group15_C 78.615 50.942 45117000 22069000 2363700 1499700 0 14708000 4476800 3723 843;818 3681 16448;16449;16450;16451;16452;16453;16454 10943;10944;10945;10946 10943 3 KASNSIISCFNNAPPAK Unmodified 1817.9094 0.90941744 1634 Q9Y2M0-2;Q9Y2M0;H3BQ24 FAN1 Fanconi-associated nuclease 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 118.75 112.07 3 0.031533 1 76321 20150910_Q1_SA_NiHu_Masterprac_group15_B 32.858 21.626 3536500 815880 0 0 1623200 0 1097400 3724 1634 3682 16455;16456;16457 10947 10947 1 KASVLYIEGHMNPK Unmodified 1585.8286 0.82864792 1161 Q2TAK8;Q2TAK8-2 MUM1 PWWP domain-containing protein MUM1 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 109.54 96.869 3 0.0021645 4 69980 20150910_Q1_SA_NiHu_Masterprac_group15_C 58.079 37.954 17526000 0 0 2567700 0 3025900 11932000 3725 1161 3683 16458;16459;16460 10948;10949;10950;10951 10951 4 KATAYILSVQAEEQK Unmodified 1677.8938 0.8937506 158 B4E1N7;P01106;H0YBT0;P01106-2 MYC Myc proto-oncogene protein yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 119.7 108.52 3 0.0019797 3 72311 20150910_Q1_SA_NiHu_Masterprac_group10_C 55.782 36.92 4039100 1448300 1351300 0 0 1239500 0 3726 158 3684 16461;16462;16463 10952;10953;10954 10954 3 KATQFVYSYGRGPK Unmodified 1600.8362 0.83617614 1066 Q12986;Q12986-2;F5GXD0;Q12986-3 NFX1 Transcriptional repressor NF-X1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 89.552 80.202 3 0.027346 1 55178 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.008 31.275 8632700 0 1056500 652560 0 1263200 5660500 3727 1066 3685 16464;16465;16466;16467 10955 10955 1 KATTVAGVPCQEWAAQEPHQHSIFTPETNPQSGLER Unmodified 4000.9126 0.91261192 295 CON__P06868 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 131.89 114.14 5 0.011295 1 80956 20150910_Q1_SA_NiHu_Masterprac_group15_C 18.58 10.574 4631700 0 0 0 0 4631700 0 + 3728 295 3686 16468 10956 10956 1 KAVEQIRNILK Unmodified 1310.8034 0.80341945 1141 Q15637-6;Q15637-4;Q15637-3;Q15637-2;Q15637 SF1 Splicing factor 1 no no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 2 3 2 102.8 94.411 2;3 0.0085469 3 64246 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.334 42.737 166590000 0 2831400 29131000 35932000 37702000 60990000 3729 1141 3687 16469;16470;16471;16472;16473;16474;16475;16476;16477 10957;10958;10959 10959 3 KAVIFCLSADK Unmodified 1250.6693 0.66929373 980 P60981;P60981-2;F6RFD5 DSTN Destrin yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 123.5 116.45 3 0.0020795 4 76104 20150910_Q1_SA_NiHu_Masterprac_group10_C 79.23 56.203 6446300 2406400 1346800 0 0 0 2693100 3730 980 3688 16478;16479;16480 10960;10961;10962;10963 10963 4 KAVLFCLSEDK Unmodified 1308.6748 0.67477304 461 E9PP50;P23528;G3V1A4;E9PK25;E9PQB7;E9PLJ3;E9PS23 CFL1 Cofilin-1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 2 2 127.88 117.05 2;3 2.3296E-19 7 81949 20150910_Q1_SA_NiHu_Masterprac_group15_B 121.21 72.695 95652000 14215000 3170400 53004000 2159300 9094600 14008000 3731 461 3689 16481;16482;16483;16484;16485;16486;16487;16488;16489 10964;10965;10966;10967;10968;10969;10970 10966 6 KAVLFCLSEDKK Unmodified 1436.7697 0.76973606 461 E9PP50;P23528;G3V1A4;E9PK25;E9PQB7;E9PLJ3;E9PS23 CFL1 Cofilin-1 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 104.05 98.452 3 0.017745 1 65017 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.662 47 14687000 0 2158900 3992200 883850 0 7652100 3732 461 3690 16490;16491;16492;16493 10971 10971 1 KAVVLPGGTATSPK Unmodified 1324.7715 0.77145062 568 H0Y5I5;F8WCX2;Q8N1G0-2;Q8N1G0 ZNF687 Zinc finger protein 687 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 74.903 72.82 3 0.0051808 1 50582 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.03 31.188 1006500 0 324800 0 0 0 681730 3733 568 3691 16494;16495 10972 10972 1 KAVVQSPQVTEVL Unmodified 1396.7926 0.79257999 1165 Q3KQU3-2;Q3KQU3-4;Q3KQU3;A1L1B7;Q3KQU3-3 MAP7D1 MAP7 domain-containing protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 132.76 127.79 2 0.0029422 1 87764 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.781 72.657 13249000 0 0 0 0 0 13249000 3734 1165 3692 16496 10973 10973 1 KAVVVPARSEALGK Unmodified 1423.8511 0.85109792 1447 Q9BTC0;Q9BTC0-1;Q9BTC0-2;Q9BTC0-3 DIDO1 Death-inducer obliterator 1 yes no 0 0 2 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 71.969 64.624 3 0.0014432 4 50658 20150910_Q1_SA_NiHu_Masterprac_group15_C 87.719 55.104 45328000 5817000 7916700 10718000 5101700 6028600 9745600 3735 1447 3693 16497;16498;16499;16500;16501;16502 10974;10975;10976;10977 10975 4 KCAGCTNPISGLGGTK Unmodified 1619.776 0.77596042 1101 Q14192 FHL2 Four and a half LIM domains protein 2 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 90.228 84.272 3 0.0052079 3 57748 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.342 37.613 6264000 1005900 1715900 0 826020 1028800 1687300 3736 1101 3694 16503;16504;16505;16506;16507 10978;10979;10980 10979 3 KCGYPGHLTFECR Unmodified 1623.7286 0.7286163 1311 Q8N9Q2 SREK1IP1 Protein SREK1IP1 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 97.087 89.426 3 0.0022901 2 60785 20150910_Q1_SA_NiHu_Masterprac_group13_B 62.162 51.216 4812600 0 417480 968640 507800 1169400 1749200 3737 1311 3695 16508;16509;16510;16511;16512 10981;10982 10981 2 KCLAPIANTTNGQGCTDYVSEVVK Unmodified 2624.2574 0.25743661 1250 Q7Z333-3;Q7Z333;Q7Z333-4 SETX Probable helicase senataxin yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.8 131.19 3 1.8763E-09 1 84640 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.854 51.95 18486000 0 18486000 0 0 0 0 3738 1250 3696 16513 10983 10983 1 KCPFTGNVSIR Unmodified 1277.655 0.65504065 989 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 2 1 99.71 91.989 3 0.0076835 2 67351 20150910_Q1_SA_NiHu_Masterprac_group15_C 79.23 33.797 6611800 0 559490 675620 906040 2516400 1954200 3739 989 3697 16514;16515;16516;16517;16518;16519 10984;10985 10985 2 KCSETPEQVPAAPQAPGVENPPEADCMIGTGK Unmodified 3364.5374 0.53737622 295 CON__P06868 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 132.31 116.62 3 0.035156 1 78005 20150910_Q1_SA_NiHu_Masterprac_group10_C 21.097 14.608 12777000 12777000 0 0 0 0 0 + 3740 295 3698 16520 10986 10986 1 KCSLPAEEDSVLEK Unmodified 1603.7763 0.77633758 388 E7EVA0;P27816-6;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 2 1 104.87 96.351 3 3.454E-104 3 64837 20150910_Q1_SA_NiHu_Masterprac_group10_C 145.49 115.47 43465000 9040400 3473300 6034200 7705800 9472700 7738600 3741 388 3699 16521;16522;16523;16524;16525;16526;16527 10987;10988;10989 10989 2 KCVSCQNLNPSNK Unmodified 1547.7184 0.71844555 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 49.316 43.593 3 0.013012 2 31276 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.318 29.201 5472500 921670 1250900 641140 547200 800740 1310900 3742 945 3700 16528;16529;16530;16531;16532;16533 10990;10991 10990 2 KDAPPLLPSDTGQGYRTVK Unmodified 2042.0797 0.07965389 1198 Q5TG40;Q9NPF5;Q5TG37;Q5TG38 DMAP1 DNA methyltransferase 1-associated protein 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 111.99 102.92 3 0.026205 1 70357 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.395 29.597 5367300 873240 777700 0 0 1426200 2290200 3743 1198 3701 16534;16535;16536;16537 10992 10992 1 KDDEENYLDLFSHK Unmodified 1751.8002 0.80024414 1045 Q07666;Q07666-3;Q07666-2;E7ET98 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 133.3 133 3 2.3097E-295 2 86490 20150910_Q1_SA_NiHu_Masterprac_group13_B 186.29 151.37 258100000 0 136720000 0 121380000 0 0 3744 1045 3702 16538;16539 10993;10994 10993 2 KDDEENYLDLFSHKNMK Unmodified 2124.9786 0.97861922 1045 Q07666;Q07666-3;Q07666-2;E7ET98 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 132.51 127.54 4 1.2269E-05 1 87491 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.951 65.051 20340000 0 0 0 0 0 20340000 3745 1045 3703 16540 10995 10995 1 KDDINLLPSK Unmodified 1141.6343 0.63428844 1611 Q9ULW0 TPX2 Targeting protein for Xklp2 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 104.64 96.158 2 3.0795E-191 3 65573 20150910_Q1_SA_NiHu_Masterprac_group15_B 182.71 130.55 153740000 15795000 22989000 24721000 9561300 16619000 64054000 3746 1611 3704 16541;16542;16543;16544;16545;16546 10996;10997;10998 10998 3 KDDINLLPSKSSVTK Unmodified 1643.9094 0.90940066 1611 Q9ULW0 TPX2 Targeting protein for Xklp2 yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 101.15 94.658 3 0.011321 1 63454 20150910_Q1_SA_NiHu_Masterprac_group10_B 56.29 37.953 6253500 5052200 1201300 0 0 0 0 3747 1611 3705 16547;16548 10999 10999 1 KDDIPEEDKGNVK Unmodified 1485.7311 0.73110195 1106 Q14331;E9PLY7;Q9BZ01 FRG1;FRG1B Protein FRG1;Protein FRG1B yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 46.553 41.673 3 0.0037797 2 29792 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.728 76.728 2899300 0 811980 661530 0 0 1425700 3748 1106 3706 16549;16550;16551 11000;11001 11001 2 KDEDPENKIEFK Unmodified 1490.7253 0.72528829 1071 Q13123;Q9H4P6;E7EQZ7;D6REL4 IK Protein Red yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 73.128 71.873 3 0.034755 1 49904 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.04 38.382 1237700 0 0 0 0 0 1237700 3749 1071 3707 16552 11002 11002 1 KDEEEDMSLD Unmodified 1209.4707 0.47071309 1151 Q16186 ADRM1 Proteasomal ubiquitin receptor ADRM1 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 78.209 70.87 2 0.010043 2 49100 20150910_Q1_SA_NiHu_Masterprac_group13_B 102.52 102.52 5532400 0 448020 1330100 830520 1809600 1114100 3750 1151 3708 16553;16554;16555;16556;16557 11003;11004 11003 2 KDEISVDSLDFNK Unmodified 1508.7359 0.73585297 1003 P63151;P63151-2;E5RFR9;A8MZB4;Q66LE6 PPP2R2A;PPP2R2D Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 132.69 117 3 0.025577 1 78403 20150910_Q1_SA_NiHu_Masterprac_group10_C 39.776 21.045 5989200 5989200 0 0 0 0 0 3751 1003 3709 16558 11005 11005 1 KDEISVDSLDFNKK Unmodified 1636.8308 0.83081599 1003 P63151;P63151-2;E5RFR9;A8MZB4;Q66LE6 PPP2R2A;PPP2R2D Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 120.18 114.87 3 8.2614E-104 5 75684 20150910_Q1_SA_NiHu_Masterprac_group10_C 147.51 119.45 19055000 12060000 2413600 0 2394600 0 2187200 3752 1003 3710 16559;16560;16561;16562 11006;11007;11008;11009;11010 11010 5 KDESQEGKQQYLQSIEER Unmodified 2194.0502 0.050204255 861 P21912 SDHB Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 104.99 91.207 4 0.0013684 1 68268 20150910_Q1_SA_NiHu_Masterprac_group13_C 59.502 46.87 2278800 1113000 0 1165700 0 0 0 3753 861 3711 16563;16564 11011 11011 1 KDGDMHSSSLTVECSK Unmodified 1779.7767 0.77674829 1063 Q12888;Q12888-2;A6NNK5;F8VY86;C9JXV0 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 60.673 53.997 3 6.0402E-51 2 38413 20150910_Q1_SA_NiHu_Masterprac_group15_B 122.46 109.29 25355000 1235900 3076200 4351400 1696700 2437600 12557000 3754 1063 3712 16565;16566;16567;16568;16569;16570 11012;11013 11013 2 KDGFYRQVNQISGAHNTSDK Unmodified 2264.0934 0.093406473 499 F5GZ90;Q9NZJ0;Q9NZJ0-2 DTL Denticleless protein homolog yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 84.792 77.873 4 0.038804 1 53464 20150910_Q1_SA_NiHu_Masterprac_group15_B 32.353 9.7236 3742500 0 458720 1200400 0 0 2083400 3755 499 3713 16571;16572;16573 11014 11014 1 KDKEVIQLK Unmodified 1099.6601 0.66010926 768 O95239;O95239-2;Q2VIQ3 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 132.47 122.27 1;2 3.3705E-19 4 82830 20150910_Q1_SA_NiHu_Masterprac_group15_C 130.66 26.455 36088000000 0 0 3585700000 6438100000 25293000000 771700000 3756 768 3714 16574;16575;16576;16577;16578 11015;11016;11017;11018 11018 4 KDLCNTHLMR Unmodified 1286.6224 0.62236032 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 59.044 53.964 3 0.0016482 1 38348 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.827 66.573 14912000 0 0 921580 1005300 0 12985000 3757 1012 3715 16579;16580;16581 11019 11019 1 KDLEDGEVPQHAGK Unmodified 1521.7423 0.74233534 1129 Q15059-2;Q15059 BRD3 Bromodomain-containing protein 3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 47.945 46.991 3 0.0023617 1 33550 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.434 25.139 1632800 0 0 0 0 0 1632800 3758 1129 3716 16582 11020 11020 1 KDNQESSDAELSSSEYIK Unmodified 2028.9124 0.91237337 1399 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 100.7 91.128 3 0.0014628 5 61389 20150910_Q1_SA_NiHu_Masterprac_group10_B 51.225 35.292 6147700 0 2128100 1228500 0 949670 1841300 3759 1399 3717 16583;16584;16585;16586 11021;11022;11023;11024;11025 11025 5 KDPETYEVDSGTTK Unmodified 1568.7206 0.72059684 1164 Q3B726 TWISTNB DNA-directed RNA polymerase I subunit RPA43 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 60.865 54.189 2;3 2.5743E-29 9 38465 20150910_Q1_SA_NiHu_Masterprac_group15_B 109.48 61.765 32940000 1735600 4585400 2682100 1836300 8743100 13358000 3760 1164 3718 16587;16588;16589;16590;16591;16592;16593;16594;16595;16596;16597;16598;16599 11026;11027;11028;11029;11030;11031;11032;11033;11034 11030 9 KDPNFKGFSGAGEK Unmodified 1480.731 0.73104237 945;1251 P49792;E9PGT0;P0DJD0;P0DJD1;F8VYC4;Q7Z3J3;B4DZH4 RANBP2;RGPD1;RGPD2;RGPD4 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 4 no no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 74.238 66.705 3 0.0037664 6 46685 20150910_Q1_SA_NiHu_Masterprac_group10_C 84.62 59.552 34903000 8054400 5819800 5208500 3478900 6551700 5790100 3761 945;1251 3719 16600;16601;16602;16603;16604;16605;16606 11035;11036;11037;11038;11039;11040 11039 6 KDPQGLGLHFYK Unmodified 1401.7405 0.74048484 100 E9PF10;O75694-2;B4DLT2;O75694 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 3 1 118.62 108.67 3 1.346E-97 8 77354 20150910_Q1_SA_NiHu_Masterprac_group15_C 150.06 124.53 319270000 21674000 25891000 52567000 23062000 80655000 115420000 3762 100 3720 16607;16608;16609;16610;16611;16612;16613;16614;16615 11041;11042;11043;11044;11045;11046;11047;11048 11046 8 KDPSGASNPSADSPLHRGVHGK Unmodified 2213.0937 0.093740824 201 B7ZAP5;P55317 FOXA1 Hepatocyte nuclear factor 3-alpha yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 55.23 47.434 4 0.0062528 1 33854 20150910_Q1_SA_NiHu_Masterprac_group10_B 42.052 31.678 1845500 0 1421800 423710 0 0 0 3763 201 3721 16616;16617 11049 11049 1 KDQVTAQEIFQDNHEDGPTAK Unmodified 2370.1088 0.10878177 830 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 2 1 2 2 2 2 113.95 104.17 3;4 1.4005E-09 3 70084 20150910_Q1_SA_NiHu_Masterprac_group10_C 85.177 67.97 32810000 13275000 1215600 4836200 3730300 2629800 7123500 3764 830 3722 16618;16619;16620;16621;16622;16623;16624;16625;16626;16627;16628 11050;11051;11052 11052 3 KDQYFLDK Unmodified 1055.5288 0.52876073 1625 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 78.555 72.859 2 6.059E-09 3 55733 20150910_Q1_SA_NiHu_Masterprac_group15_C 123.86 66.816 6815800 1255300 918170 0 1128600 1334500 2179200 3765 1625 3723 16629;16630;16631;16632;16633 11053;11054;11055 11054 3 KDSEDMGVVVSLGTGNR Unmodified 1762.852 0.85196214 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.42 125.46 3 0.011083 1 85181 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.437 27.67 3482000 0 0 0 0 0 3482000 3766 352;968 3724 16634 11056 11056 0 KDSEDMGVVVSLGTGNRCVK Unmodified 2150.046 0.045987275 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 130.4 112.53 3 0.00065063 1 79415 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.936 45.736 7733500 0 0 1974400 0 5759100 0 3767 352;968 3725 16635;16636 11057 11057 1 KDSVFTSMFHSVRR Unmodified 1695.8515 0.85150863 1095 Q14146 URB2 Unhealthy ribosome biogenesis protein 2 homolog yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 130.9 125.94 4 0.015641 1 85711 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.282 11.767 2757600 0 0 0 0 0 2757600 3768 1095 3726 16637 11058 11058 1 KDTAASGYGTQNIR Unmodified 1480.727 0.72701962 1642 Q9Y314 NOSIP Nitric oxide synthase-interacting protein yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 61.3 53.203 3 0.00057376 3 38009 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.316 57.232 6522200 0 959050 1030300 0 1198900 3333900 3769 1642 3727 16638;16639;16640;16641 11059;11060;11061 11059 2 KDTVCQICESSGDSLIPCEGECCK Unmodified 2831.154 0.15403545 210 Q9BZ95-4;C9JY66;Q9BZ95-2;B7ZL11;Q9BZ95 WHSC1L1 Histone-lysine N-methyltransferase NSD3 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 130.32 130.32 3 0.039882 1 83288 20150910_Q1_SA_NiHu_Masterprac_group13_B 25.819 23.137 2622200 0 0 0 2622200 0 0 3770 210 3728 16642 11062 11062 1 KDVETTSSVSVK Unmodified 1278.6667 0.66671078 535 Q96RL1;F8VQY2;Q96RL1-2;D6RC40;D6RCQ3;D6RCF3;Q96RL1-5;D6RDZ5;D6R9M3 UIMC1 BRCA1-A complex subunit RAP80 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 47.967 43.625 3 0.0083883 1 35444 20150910_Q1_SA_NiHu_Masterprac_group13_C 53.869 53.869 4530000 561700 772080 2147500 266240 0 782400 3771 535 3729 16643;16644;16645;16646;16647 11063 11063 1 KDVETTSSVSVKR Unmodified 1434.7678 0.7678218 535 Q96RL1;F8VQY2;Q96RL1-2;D6RC40;D6RCQ3;D6RCF3;Q96RL1-5;D6RDZ5 UIMC1 BRCA1-A complex subunit RAP80 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 44.859 38.572 3 0.025609 1 27340 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.434 37.204 2308700 351370 746680 623220 0 202950 384440 3772 535 3730 16648;16649;16650;16651;16652 11064 11064 1 KDVFMPPSSSSELQESR Unmodified 1922.9044 0.90439164 769 O95243-2 MBD4 Methyl-CpG-binding domain protein 4 no no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 117.82 111.84 3 0.0033047 3 76691 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.133 30.062 6537300 0 826660 0 2494700 507850 2708200 3773 769 3731 16653;16654;16655;16656 11065;11066;11067 11066 3 KDVPDSQQHPAPEK Unmodified 1574.7689 0.76888444 735 O60885-2;Q4G0X8;O60885 BRD4 Bromodomain-containing protein 4 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 34.598 29.233 3 2.5826E-13 3 23525 20150910_Q1_SA_NiHu_Masterprac_group13_C 105.19 78.093 3115500 0 887460 1318700 0 70003 839410 3774 735 3732 16657;16658;16659;16660 11068;11069;11070 11068 3 KDYNEAYNYYTK Unmodified 1570.694 0.69398816 1430 Q99615 DNAJC7 DnaJ homolog subfamily C member 7 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 92.504 83.078 3 0.01598 1 56650 20150910_Q1_SA_NiHu_Masterprac_group10_B 47.242 35.372 2152200 0 1286700 0 0 865520 0 3775 1430 3733 16661;16662 11071 11071 1 KEAGEGGEAEAPAAEGGK Unmodified 1656.7591 0.75910761 886 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 37.822 33.134 3 0.00089142 4 26568 20150910_Q1_SA_NiHu_Masterprac_group13_C 63.302 51.263 4989800 390380 754770 1667300 344880 475800 1356600 3776 886 3734 16663;16664;16665;16666;16667;16668 11072;11073;11074;11075 11073 4 KEAQELSQNSAIK Unmodified 1444.7522 0.75217174 1534 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 56.874 50.637 3 0.00055941 3 41679 20150910_Q1_SA_NiHu_Masterprac_group15_C 90.689 52.694 21006000 0 2994200 2092800 825860 8480400 6612900 3777 1534 3735 16669;16670;16671;16672;16673 11076;11077;11078 11077 3 KEAVAPVQEESDLEK Unmodified 1670.8363 0.8362953 200 E9PGG1;E7EU01;E7EUM4;E7ERR6;E7ERH4;E7ET01;E7ETL8;E7EQU2;E7ESD3;E7EMU4;E7EV09;E7EQL5;Q13409-6;Q13409-3;B7ZA04;Q13409-2;Q13409-5;Q13409;F8W8S0 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 89.242 80.339 3 0.0012817 5 55017 20150910_Q1_SA_NiHu_Masterprac_group10_B 60.549 41.375 4681600 1104000 885840 755490 948040 988240 0 3778 200 3736 16674;16675;16676;16677;16678 11079;11080;11081;11082;11083 11083 5 KEDINLSVRK Unmodified 1200.6826 0.68263561 1142 Q15645;Q15645-2;H0YAL2 TRIP13 Pachytene checkpoint protein 2 homolog yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 64.935 57.875 3 8.3005E-24 2 40992 20150910_Q1_SA_NiHu_Masterprac_group15_B 129.88 73.898 7764900 328290 1003300 1847700 595880 800720 3189100 3779 1142 3737 16679;16680;16681;16682;16683;16684 11084;11085 11085 2 KEEAEIQAELER Unmodified 1443.7205 0.72053726 1262 Q86UE8-3;Q86UE8-2;Q86UE8;Q9UKI8-3;Q9UKI8-4;Q9UKI8-5;Q9UKI8;Q9UKI8-2 TLK2;TLK1 Serine/threonine-protein kinase tousled-like 2;Serine/threonine-protein kinase tousled-like 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 93.28 91.123 3 0.039808 1 62289 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.793 9.4093 1354400 0 0 0 0 0 1354400 3780 1262 3738 16685 11086 11086 1 KEEEEEENFPGQASSQQVHSENIK Unmodified 2772.2475 0.24746009 835 P13682;C9JGR2;C9J011;C9JGS9 ZNF35 Zinc finger protein 35 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 92.302 86.246 4 6.9586E-06 2 59408 20150910_Q1_SA_NiHu_Masterprac_group10_C 59.212 54.896 6217700 1167200 1009100 0 859400 1734900 1447100 3781 835 3739 16686;16687;16688;16689;16690 11087;11088 11088 1 KEEILSSSDICQK Unmodified 1535.7501 0.75012283 966 P54278;C9J167;I3L0B5 PMS2 Mismatch repair endonuclease PMS2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 86.166 84.234 3 0.027743 1 57253 20150910_Q1_SA_NiHu_Masterprac_group10_B 39.068 24.559 3030200 0 1161500 0 0 0 1868700 3782 966 3740 16691;16692 11089 11089 1 KEENDDDFTFGQSALK Unmodified 1842.8272 0.82718718 1302 Q8N5C6 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 129.43 119.04 2;3 1.7746E-165 6 77534 20150910_Q1_SA_NiHu_Masterprac_group10_C 160.63 101.38 157140000 52734000 12021000 40974000 6844200 18463000 26103000 3783 1302 3741 16693;16694;16695;16696;16697;16698;16699 11090;11091;11092;11093;11094;11095 11094 6 KEENDDDFTFGQSALKK Unmodified 1970.9222 0.92215019 1302 Q8N5C6 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 0 0 2 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 115.57 104.01 3 0.0072493 3 71014 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.565 35.669 9116100 3648900 0 0 0 1437500 4029700 3784 1302 3742 16700;16701;16702 11096;11097;11098 11096 3 KEESFVCEHPSK Unmodified 1475.6715 0.67147858 230 C9J5X9;Q8NB91 FANCB Fanconi anemia group B protein yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 52.287 45.017 3 0.0029686 2 32296 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.602 45.466 2144000 0 499450 519690 0 274320 850590 3785 230 3743 16703;16704;16705;16706 11099;11100 11100 2 KEESTTGNANLLEK Unmodified 1532.7682 0.76821573 27 F5H101;Q76FK4-2;Q76FK4-4;A6NJK7;Q76FK4;F8WE42;F5GWN9;F5H540;F5H797;F5H8B8;F5H692;F5H7D5 NOL8 Nucleolar protein 8 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 2 1 74.191 60.519 2;3 2.1421E-30 4 49031 20150910_Q1_SA_NiHu_Masterprac_group13_C 117.48 77.923 19274000 8086400 0 10473000 0 714420 0 3786 27 3744 16707;16708;16709;16710 11101;11102;11103;11104 11101 4 KEETQPPVALK Unmodified 1238.6871 0.68705229 1316;1317 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein no no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 3 2 2 2 2 2 73.173 65.719 2;3 0.0024162 8 46000 20150910_Q1_SA_NiHu_Masterprac_group10_C 75.788 10.968 41214000 5144900 3667100 6187400 2514200 6963400 16737000 3787 1316;1317 3745 16711;16712;16713;16714;16715;16716;16717;16718;16719;16720;16721;16722;16723 11105;11106;11107;11108;11109;11110;11111;11112 11109 8 KEETQPPVALKK Unmodified 1366.782 0.78201531 1316;1317 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein no no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 1 1 1 1 1 56.259 49.827 3 0.0055777 3 41596 20150910_Q1_SA_NiHu_Masterprac_group13_C 77.674 37.199 62136000 10485000 11022000 16605000 7273700 4842600 11907000 3788 1316;1317 3746 16724;16725;16726;16727;16728;16729;16730 11113;11114;11115 11113 3 KEFVINPNGK Unmodified 1144.6241 0.6240581 1346 Q8WYQ5-3;Q8WYQ5 DGCR8 Microprocessor complex subunit DGCR8 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 80.432 73.15 2 0.012304 2 50953 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.014 51.212 4052800 1170600 523430 825820 0 0 1532900 3789 1346 3747 16731;16732;16733;16734 11116;11117 11117 2 KEGLNLPSQLAHR Unmodified 1461.8052 0.80521036 270 C9JU95;P40938 RFC3 Replication factor C subunit 3 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 109.63 100.69 3 0.00093579 3 73917 20150910_Q1_SA_NiHu_Masterprac_group13_C 85.554 68.984 6995200 1093700 1188200 995530 0 0 3717700 3790 270 3748 16735;16736;16737;16738 11118;11119;11120 11118 3 KEGLNLPSQLAHRLAEK Unmodified 1903.0639 0.063944246 270 C9JU95;P40938 RFC3 Replication factor C subunit 3 yes no 0 0 2 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 131.67 123.83 4 0.0028978 2 84179 20150910_Q1_SA_NiHu_Masterprac_group13_B 51.127 30.772 15884000 9192900 0 0 6690700 0 0 3791 270 3749 16739;16740 11121;11122 11121 2 KEGQWDCSSCLVR Unmodified 1623.7134 0.71336017 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 110.02 92.976 3 0.001155 1 67977 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.345 52.815 3719700 0 0 0 0 3719700 0 3792 945 3750 16741 11123 11123 1 KEGQWDCSSCLVRNEANATR Unmodified 2380.0648 0.064825236 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 114.28 96.584 4 0.017686 1 71403 20150910_Q1_SA_NiHu_Masterprac_group13_C 37.157 25.494 5255000 0 0 5255000 0 0 0 3793 945 3751 16742 11124 11124 1 KEGQWDCSVCLVR Unmodified 1635.7497 0.74974567 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 125.63 116.14 3 2.817E-75 4 76525 20150910_Q1_SA_NiHu_Masterprac_group10_C 142.39 103.44 54978000 16232000 5119300 14210000 2438800 4248900 12729000 3794 945 3752 16743;16744;16745;16746;16747;16748 11125;11126;11127;11128 11128 4 KEGQWDCSVCLVRNEASATK Unmodified 2337.0842 0.084163695 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 2 126.5 115.19 3;4 0 9 80952 20150910_Q1_SA_NiHu_Masterprac_group13_C 201.18 161.99 233890000 119240000 10244000 64607000 15262000 9927600 14613000 3795 945 3753 16749;16750;16751;16752;16753;16754;16755;16756;16757;16758 11129;11130;11131;11132;11133;11134;11135;11136;11137 11131 8 KEGSDGPLATSKPVPAEK Unmodified 1809.9472 0.94724273 449 E9PJS4;P08240 SRPR Signal recognition particle receptor subunit alpha yes no 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 3 1 68.524 60.287 3;4 6.0886E-32 5 42210 20150910_Q1_SA_NiHu_Masterprac_group13_B 110.34 70.807 21700000 3455100 3130500 3552400 3594000 5789100 2179100 3796 449 3754 16759;16760;16761;16762;16763;16764;16765;16766;16767;16768;16769 11138;11139;11140;11141;11142 11139 5 KEGSWWHCNSCSLK Unmodified 1777.7665 0.76645837 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 98.716 91.056 3 4.5973E-08 2 66651 20150910_Q1_SA_NiHu_Masterprac_group15_C 97.69 81.467 29149000 0 242480 5054500 6515300 5817000 11520000 3797 945 3755 16770;16771;16772;16773;16774 11143;11144 11144 2 KEHLDDYGEAPVETDGEHVK Unmodified 2267.0342 0.03421984 829 P12757-5;P12757;P12757-3;C9J8R9;P12757-4;P12757-2 SKIL Ski-like protein yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 88.585 80.907 4 0.0046126 3 60570 20150910_Q1_SA_NiHu_Masterprac_group15_C 42.052 37.954 6883900 1027500 778430 1574000 873140 951620 1679200 3798 829 3756 16775;16776;16777;16778;16779;16780 11145;11146;11147 11146 1 KEIDVISIPSK Unmodified 1227.7075 0.70745338 193 B7Z6Q6;Q99661;Q99661-2;Q5JR91;B7Z7M6;Q5JR89 KIF2C Kinesin-like protein KIF2C yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 5 2 124.17 113.02 2;3 8.0506E-273 14 78743 20150910_Q1_SA_NiHu_Masterprac_group15_C 196.5 107.33 379930000 52198000 54799000 128770000 22933000 36772000 84460000 3799 193 3757 16781;16782;16783;16784;16785;16786;16787;16788;16789;16790;16791;16792;16793;16794;16795 11148;11149;11150;11151;11152;11153;11154;11155;11156;11157;11158;11159;11160;11161 11154 14 KEKENGFSSPPQIK Unmodified 1587.8257 0.82567103 825 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 74.634 67.59 3 0.027624 1 48103 20150910_Q1_SA_NiHu_Masterprac_group10_C 51.939 25.956 11048000 2903000 1712500 0 0 3575500 2857000 3800 825 3758 16796;16797;16798;16799 11162 11162 1 KEKPAAVATAMAR Unmodified 1342.7391 0.73910463 635 H3BP78;Q9NVI1-2;Q9NVI1-1;Q9NVI1 FANCI Fanconi anemia group I protein yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 54.8 50.374 3 0.0069716 1 41272 20150910_Q1_SA_NiHu_Masterprac_group15_C 65.809 46.353 4476000 0 787100 0 766850 1290100 1631900 3801 635 3759 16800;16801;16802;16803 11163 11163 1 KEKPLPVICSTSAASLK Unmodified 1828.0128 0.012819878 149 B4DZR9;Q9UQR0;B4DRC2 SCML2 Sex comb on midleg-like protein 2 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 112.7 103.67 4 0.0057325 1 68382 20150910_Q1_SA_NiHu_Masterprac_group10_B 46.121 29.599 13866000 2558200 1514900 2387400 1907000 1511100 3987400 3802 149 3760 16804;16805;16806;16807;16808;16809 11164 11164 1 KELGHVNGLVDK Unmodified 1307.7197 0.7197494 237 Q96QT6-2;Q96QT6-3;C9J9G2;Q96QT6 PHF12 PHD finger protein 12 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 66.909 61.328 3 0.020096 1 49659 20150910_Q1_SA_NiHu_Masterprac_group13_C 44.829 8.4116 2869900 0 0 787470 386420 0 1696000 3803 237 3761 16810;16811;16812 11165 11165 1 KELPSHVQAMHK Unmodified 1403.7344 0.73435361 1250 Q7Z333-3;Q7Z333;Q7Z333-4 SETX Probable helicase senataxin yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 44.845 38.151 3 0.0022425 2 31054 20150910_Q1_SA_NiHu_Masterprac_group13_C 65.179 17.877 1032300 0 539160 493140 0 0 0 3804 1250 3762 16813;16814 11166;11167 11166 2 KELQGDGPPSSPTNDPTVK Unmodified 1965.9643 0.96434936 430 Q12873;E9PG89;Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 77.915 70.963 3 0.025505 2 49063 20150910_Q1_SA_NiHu_Masterprac_group15_B 32.305 19.415 8120900 0 2845700 1288600 0 0 3986600 3805 430 3763 16815;16816;16817 11168;11169 11168 2 KELQGDGPPSSPTNDPTVKYETQPR Unmodified 2740.3304 0.33040186 430 Q12873;E9PG89;Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 96.682 89.596 4 0.03044 1 67467 20150910_Q1_SA_NiHu_Masterprac_group13_C 30.352 22.499 10284000 0 2882200 2376700 0 0 5024900 3806 430 3764 16818;16819;16820 11170 11170 1 KELSPAGSISK Unmodified 1115.6186 0.61863837 772 O95453-2;O95453-3;O95453;B4DSB0 PARN Poly(A)-specific ribonuclease PARN yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 57.465 49.875 2 1.0037E-07 4 35852 20150910_Q1_SA_NiHu_Masterprac_group15_B 112.02 28.025 7372000 651110 1542900 3268200 0 530090 1379700 3807 772 3765 16821;16822;16823;16824;16825 11171;11172;11173;11174 11172 4 KENALVQMADGNQAQLAMSHLNGHK Unmodified 2704.3174 0.31735153 882 P26599;P26599-2;P26599-3;A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 132.53 123.23 4 5.7472E-05 2 85778 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.718 36.143 72465000 0 13082000 59383000 0 0 0 3808 882 3766 16826;16827 11175;11176 11176 2 KENALVQMADGNQAQLAMSHLNGHK Oxidation (M) 2720.3123 0.31226615 882 P26599;P26599-2;P26599-3;A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 1 1 By matching By matching By matching By matching By matching By MS/MS 2 128.09 123.18 4 8.943E-09 2 84186 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.082 53.51 8775900 0 0 0 0 0 8775900 3809 882 3766 16828;16829 11177;11178 11178 96;97 2 KENDLNAEPNLKQTIK Unmodified 1853.9847 0.98469087 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 2 93.582 85.812 3;4 0.010477 4 58776 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.04 42.731 14398000 1700600 4460600 2974800 1069200 1166700 3026200 3810 1325 3767 16830;16831;16832;16833;16834;16835;16836;16837;16838;16839 11179;11180;11181;11182 11180 3 KENTAAENGLTVR Unmodified 1401.7212 0.72120596 1059 Q12789-3;Q12789;H3BU55 GTF3C1 General transcription factor 3C polypeptide 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 59.915 53.265 3 0.00078797 3 38084 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.282 51.835 10028000 308380 577730 1186900 366170 1505900 6083300 3811 1059 3768 16840;16841;16842;16843;16844;16845 11183;11184;11185 11183 3 KEPAASAAAFPSQR Unmodified 1429.7314 0.73137672 19 A6NF48;Q9Y2X9 ZNF281 Zinc finger protein 281 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 76.507 69.978 3 0.0011422 2 48769 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.842 37.17 7294100 1276800 0 1273300 918390 0 3825600 3812 19 3769 16846;16847;16848;16849 11186;11187 11186 2 KEPAITSQNSPEAR Unmodified 1526.7689 0.76888444 864 P23193-2;P23193;E5RIS7 TCEA1 Transcription elongation factor A protein 1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 52.112 49.43 3 0.0045324 3 36828 20150910_Q1_SA_NiHu_Masterprac_group10_C 52.008 52.008 4114700 787280 848130 0 1161300 0 1317900 3813 864 3770 16850;16851;16852;16853 11188;11189;11190 11190 3 KEPLYVGVDDDK Unmodified 1376.6824 0.68236084 1550 Q9NVP1;F5H863;H7C452 DDX18 ATP-dependent RNA helicase DDX18 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 2 2 1 1 1 1 93.171 85.802 2;3 0.0031118 3 58230 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.292 42.259 9291200 1827900 2496300 615420 524990 1724000 2102600 3814 1550 3771 16854;16855;16856;16857;16858;16859;16860;16861 11191;11192;11193 11192 3 KEPLYVGVDDDKANATVDGLEQGYVVCPSEK Unmodified 3394.6239 0.62386627 1550 Q9NVP1;F5H863 DDX18 ATP-dependent RNA helicase DDX18 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 133.14 130.66 4 1.1095E-07 2 86086 20150910_Q1_SA_NiHu_Masterprac_group13_B 50.234 42.127 220820000 0 0 0 24130000 0 196690000 3815 1550 3772 16862;16863 11194;11195 11194 2 KEPVDEDLYPEHYRK Unmodified 1916.9268 0.92684164 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 2 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 91.289 83.829 4 0.00070356 4 57399 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.358 59.217 9460200 0 1456100 800150 240330 1818800 5144700 3816 487 3773 16864;16865;16866;16867;16868 11196;11197;11198;11199 11197 4 KEQVETVPQATVK Unmodified 1455.7933 0.79330827 210 Q9BZ95-4;C9JY66;Q9BZ95-2;B7ZL11;Q9BZ95;Q9BZ95-3 WHSC1L1 Histone-lysine N-methyltransferase NSD3 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 74.548 65.524 3 0.0014488 2 45631 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.534 41.391 5270800 0 1204700 1179400 0 961380 1925300 3817 210 3774 16869;16870;16871;16872 11200;11201 11200 2 KEQVPSGAELER Unmodified 1341.6888 0.6888432 460 E9PMS6;Q8WWI1-3;E9PMT2;Q8WWI1;E9PLH4;Q8WWI1-4;F8WD26;Q8WWI1-2 LMO7 LIM domain only protein 7 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 73.886 67.034 3 0.035188 1 46695 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.016 22.543 1746700 0 672190 302060 0 0 772400 3818 460 3775 16873;16874;16875 11202 11202 1 KERAQLLVNPK Unmodified 1294.7721 0.77211932 1081 Q13416;C9JK08;B8ZZ80 ORC2 Origin recognition complex subunit 2 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 63.615 56.837 3 0.016862 1 40243 20150910_Q1_SA_NiHu_Masterprac_group10_B 72.289 38.528 8389600 0 1259200 2790400 834530 1595500 1910000 3819 1081 3776 16876;16877;16878;16879;16880 11203 11203 1 KERGHTVTEPIQPLEPELPGEGQPEAR Unmodified 2993.5207 0.52066225 706 O15446;O15446-2 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 131.14 119.86 4;5 3.1278E-29 9 85861 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.202 79.009 143990000 23847000 0 31158000 34634000 9687500 44665000 3820 706 3777 16881;16882;16883;16884;16885;16886;16887;16888;16889;16890 11204;11205;11206;11207;11208;11209;11210;11211;11212 11207 7 KERSLSSGSNFCSEQK Unmodified 1842.853 0.85302477 769 O95243-2 MBD4 Methyl-CpG-binding domain protein 4 no no 0 0 2 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 55.047 46.248 3 0.0062189 3 34115 20150910_Q1_SA_NiHu_Masterprac_group10_C 58.824 58.824 3745000 792920 557960 1716000 0 678070 0 3821 769 3778 16891;16892;16893;16894 11213;11214;11215 11215 3 KESEFDDEPKFMSK Unmodified 1715.7713 0.7712522 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 111.73 97.094 3 0.0011637 1 65002 20150910_Q1_SA_NiHu_Masterprac_group10_C 88.092 73.864 5063900 3878700 0 1185200 0 0 0 3822 1639 3779 16895;16896 11216 11216 1 KESFAPGTMYKPFGK Unmodified 1686.844 0.84396364 1398 Q96IZ5-2;Q96IZ5;H0Y6F9;H7BY88;Q96IZ5-3 RBM41 RNA-binding protein 41 yes no 0 0 2 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 130.45 114.76 3 0.0018242 2 76088 20150910_Q1_SA_NiHu_Masterprac_group10_C 73.415 52.355 1405900 1405900 0 0 0 0 0 3823 1398 3780 16897;16898 11217;11218 11218 2 KESLGHWSQGLK Unmodified 1368.715 0.71499837 274 C9JZ40;Q7Z2E3-4;Q7Z2E3-5;Q7Z2E3-9;Q7Z2E3-10;Q7Z2E3-11;Q7Z2E3-7;Q7Z2E3;C9J8U3;Q6JV81 APTX Aprataxin yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 1 80.64 73.033 3 0.00094367 8 60710 20150910_Q1_SA_NiHu_Masterprac_group15_C 82.505 49.447 34365000 7618900 830660 9344200 9387700 2854400 4329300 3824 274 3781 16899;16900;16901;16902;16903;16904;16905;16906 11219;11220;11221;11222;11223;11224;11225;11226 11223 8 KESYSVYVYK Unmodified 1264.634 0.63395408 119 Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;O60814;Q5QNW6-2;B4DR52;Q99880;P57053 HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST1H2BL;H2BFS Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B;Histone H2B type 1-L;Histone H2B type F-S yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 94.485 88.409 2 0.00032825 1 65237 20150910_Q1_SA_NiHu_Masterprac_group15_C 107.11 57.08 6332100 864170 1653300 0 543860 1508100 1762700 3825 119 3782 16907;16908;16909;16910;16911 11227 11227 1 KETDVFWK Unmodified 1051.5338 0.53384611 896 P35251-2;P35251 RFC1 Replication factor C subunit 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 1 1 1 101.94 95.119 2 2.5376E-08 2 63664 20150910_Q1_SA_NiHu_Masterprac_group10_B 120.31 80.759 15583000 0 2713900 1945900 1538600 3885500 5499000 3826 896 3783 16912;16913;16914;16915;16916;16917 11228;11229 11229 2 KETEGTVTCTGAEGR Unmodified 1594.7257 0.72569899 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 40.209 34.784 3 0.00027738 2 24387 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.292 62.559 3186500 452750 0 1139700 217100 401110 975870 3827 1325 3784 16918;16919;16920;16921;16922 11230;11231 11231 2 KETELLGSFSK Unmodified 1237.6554 0.65541781 54 Q9NSV4-6;A8MYX0;Q9NSV4-5;C9JL55;Q9NSV4-4;C9JDG1;Q9NSV4;C9JDG0 DIAPH3 Protein diaphanous homolog 3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 111.64 103.92 3 0.0029183 1 71065 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.268 29.579 2723600 0 816770 478820 0 0 1428000 3828 54 3785 16923;16924;16925 11232 11232 1 KETTFFLKEK Unmodified 1269.6969 0.69688869 1415 Q96QE3;Q96QE3-2 ATAD5 ATPase family AAA domain-containing protein 5 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 91.076 81.65 3 0.033832 1 55630 20150910_Q1_SA_NiHu_Masterprac_group10_B 72.289 56.326 2335700 0 1870200 0 0 465530 0 3829 1415 3786 16926;16927 11233 11233 1 KETVETAQDDETSSQGK Unmodified 1851.8334 0.83339477 24 Q5JSL3;A6NIW2 DOCK11 Dedicator of cytokinesis protein 11 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 38.21 32.494 3 0.00091942 1 26232 20150910_Q1_SA_NiHu_Masterprac_group13_C 57.525 47.679 1558600 0 316970 702330 0 74987 464350 3830 24 3787 16928;16929;16930;16931 11234 11234 1 KEVDATSPAPSTSSTVK Unmodified 1703.8578 0.85775902 1155 Q16666-3;Q16666-2;Q16666;H3BLV7;E7EPR3;H3BM18 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 60.437 53.761 3 0.0005629 5 37594 20150910_Q1_SA_NiHu_Masterprac_group13_B 73.498 58.707 27610000 3431700 2620000 1996000 4291900 9936900 5333400 3831 1155 3788 16932;16933;16934;16935;16936;16937 11235;11236;11237;11238;11239 11235 5 KEVDATSPAPSTSSTVKTEGAEATPGAQK Unmodified 2844.3989 0.39887536 1155 Q16666-3;Q16666-2;Q16666;H3BM18 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 82.6 74.429 4 0.00038048 4 52499 20150910_Q1_SA_NiHu_Masterprac_group10_C 40.208 26.841 5485700 2805000 0 0 1635800 1044900 0 3832 1155 3789 16938;16939;16940 11240;11241;11242;11243 11242 4 KEVHLGACGALK Unmodified 1281.6863 0.68634078 275 O60716-32;O60716-31;O60716-29;O60716-27;O60716-30;O60716-28;O60716-26;O60716-25;O60716-24;O60716-23;O60716-21;O60716-19;O60716-22;O60716-20;O60716-16;O60716-18;O60716-15;O60716-17;O60716-13;O60716-11;O60716-14;O60716-12;O60716-10;O60716-8;O60716-9;E9PIE5;O60716-7;O60716-5;C9JZR2;O60716-3;O60716-6;F8WA43;O60716-4;O60716-2;O60716;E9PKY0 CTNND1 Catenin delta-1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 70.134 59.54 3 6.9552E-05 1 41947 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.779 63.903 3866700 0 0 649670 0 432800 2784200 3833 275 3790 16941;16942;16943 11244 11244 1 KEVMLQNGETPK Unmodified 1372.7021 0.70205043 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 1 1 2 63.668 56.922 2;3 1.3096E-254 5 40346 20150910_Q1_SA_NiHu_Masterprac_group15_B 184.96 128.41 55546000 681770 11089000 15604000 688380 896650 26587000 3834 486 3791 16944;16945;16946;16947;16948;16949;16950;16951;16952 11245;11246;11247;11248;11249 11247 5 KEVMLQNGETPKDLNDEK Unmodified 2087.0205 0.020484031 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 91.094 81.82 3 0.005022 1 56106 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.949 45.927 1955900 0 0 1174700 0 0 781180 3835 486 3792 16953;16954 11250 11250 1 KEVNEGIQALSNSEEEK Unmodified 1902.9171 0.91706482 1298 Q8N3X1;Q8N3X1-2 FNBP4 Formin-binding protein 4 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 97.453 89.474 3 0.00044722 5 67287 20150910_Q1_SA_NiHu_Masterprac_group13_C 70.335 58.134 23719000 3935600 2915000 4471500 2719000 4587600 5090900 3836 1298 3793 16955;16956;16957;16958;16959;16960 11251;11252;11253;11254;11255 11252 4 KEVVAEVVKAPQVVAEAAK Unmodified 1964.1306 0.13062683 733 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 131.31 121.81 3;4 7.8353E-145 12 82318 20150910_Q1_SA_NiHu_Masterprac_group13_C 142.88 108.67 346170000 74786000 83933000 33483000 114190000 13184000 26593000 3837 733 3794 16961;16962;16963;16964;16965;16966;16967;16968;16969;16970;16971;16972 11256;11257;11258;11259;11260;11261;11262;11263;11264;11265;11266;11267 11259 12 KEYNVNDDSMK Unmodified 1341.5871 0.58708025 1107 Q14527;Q14527-2;E7ESN4;F5H3D6 HLTF Helicase-like transcription factor yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 52.404 46.955 2 0.02352 1 33647 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.416 50.563 2220500 0 822840 769120 0 0 628580 3838 1107 3795 16973;16974;16975 11268 11268 1 KEYNVNDDSMKLGGNNTSEK Unmodified 2242.0172 0.017189567 1107 Q14527;Q14527-2;E7ESN4;F5H3D6 HLTF Helicase-like transcription factor yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 84.395 75.974 4 0.0071578 1 59356 20150910_Q1_SA_NiHu_Masterprac_group13_C 42.529 33.772 1866300 168050 0 1274600 423680 0 0 3839 1107 3796 16976;16977;16978 11269 11269 1 KFACPECPK Unmodified 1135.5154 0.51543563 804 P08047;G5E9M8 SP1 Transcription factor Sp1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 57.368 50 2 0.00038629 1 37157 20150910_Q1_SA_NiHu_Masterprac_group10_C 112.71 80.951 9661500 9661500 0 0 0 0 0 3840 804 3797 16979 11270 11270 1 KFAEALGSTEAK Unmodified 1250.6507 0.65066678 90 P78347-2;P78347-4;P78347-3;B4DH52;P78347 GTF2I General transcription factor II-I yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 3 2 74.909 66.835 2;3 0.00073236 10 52255 20150910_Q1_SA_NiHu_Masterprac_group15_C 91.202 64.053 36423000 5148300 7215700 4356300 3837100 6846800 9018700 3841 90 3798 16980;16981;16982;16983;16984;16985;16986;16987;16988;16989;16990;16991;16992;16993 11271;11272;11273;11274;11275;11276;11277;11278;11279;11280 11276 9 KFEEIPIAHIK Unmodified 1323.7551 0.75507227 1015 P82912-2;P82912;H0YL99 MRPS11 28S ribosomal protein S11, mitochondrial yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 116.45 114.67 3 0.031693 1 74302 20150910_Q1_SA_NiHu_Masterprac_group13_B 42.843 20.767 5040900 0 2949900 0 1716100 0 374930 3842 1015 3799 16994;16995;16996 11281 11281 1 KFFVEESAEK Unmodified 1212.6027 0.60265396 1072 Q13127;A0PJ83;Q13127-4;F8WAN5;Q13127-3;Q13127-2 REST RE1-silencing transcription factor yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 98.013 81.12 3 0.040645 1 62333 20150910_Q1_SA_NiHu_Masterprac_group13_C 64.374 29.571 0 0 0 0 0 0 0 3843 1072 3800 16997 11282 11282 1 KFGDPVVQSDMK Unmodified 1349.6649 0.66493664 619 P08107;H0YG33 HSPA1A Heat shock 70 kDa protein 1A/1B yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 97.926 88.525 3 0.00092959 1 65342 20150910_Q1_SA_NiHu_Masterprac_group15_C 78.964 59.832 1771800 0 0 0 0 565620 1206200 3844 619 3801 16998;16999 11283 11283 1 KFIDQVVEK Unmodified 1104.6179 0.61791009 772 O95453-2;O95453-3;O95453;F5H1Z4;H3BRK1 PARN Poly(A)-specific ribonuclease PARN yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 93.231 85.67 2 0.022068 2 57999 20150910_Q1_SA_NiHu_Masterprac_group10_B 105.13 3.0666 8835100 0 2394600 1281900 664820 1268300 3225500 3845 772 3802 17000;17001;17002;17003;17004 11284;11285 11285 2 KFNQVLGDDEK Unmodified 1291.6408 0.64083038 1159 Q29RF7;Q29RF7-3 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 76.982 68.159 2 0.0057683 1 47558 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.781 28.678 1397000 0 0 172670 0 0 1224300 3846 1159 3803 17005;17006 11286 11286 1 KFNSLPQYSPVTFDRK Unmodified 1925.9999 0.99994701 238 C9JA69;Q8WY36-2;Q8WY36 BBX HMG box transcription factor BBX yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1 131.49 124.29 3;4 1.262E-64 7 83920 20150910_Q1_SA_NiHu_Masterprac_group10_B 130.64 111.85 231970000 11037000 36202000 46655000 20822000 6505800 110750000 3847 238 3804 17007;17008;17009;17010;17011;17012;17013;17014 11287;11288;11289;11290;11291;11292;11293 11291 7 KFPVFKAVSFK Unmodified 1296.7594 0.75942937 786 P04080 CSTB Cystatin-B yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 131.96 131.96 3 1.4784E-09 1 84959 20150910_Q1_SA_NiHu_Masterprac_group13_B 111.5 67.071 0 0 0 0 0 0 0 3848 786 3805 17015 11294 11294 1 KFQSFQDHKLK Unmodified 1404.7514 0.75138388 1106 Q14331;E9PLY7;Q9BZ01 FRG1;FRG1B Protein FRG1;Protein FRG1B yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 60.862 53.163 3 3.4267E-41 8 44706 20150910_Q1_SA_NiHu_Masterprac_group13_C 132.25 89.274 53120000 1338800 6172100 13842000 5117600 12266000 14383000 3849 1106 3806 17016;17017;17018;17019;17020;17021;17022 11295;11296;11297;11298;11299;11300;11301;11302 11298 8 KFRQCPEPTSTAEK Unmodified 1677.8145 0.81445442 1250 Q7Z333-3;Q7Z333;Q7Z333-4 SETX Probable helicase senataxin yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 43.433 39.456 4 0.013996 1 27862 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.037 30.864 2538000 0 0 1325000 371170 0 841850 3850 1250 3807 17023;17024;17025 11303 11303 1 KFSCEICEK Unmodified 1199.5315 0.53147962 1631 Q9Y2D9;D6RDG5;Q9UFB7;D6RF85;F5H6L2;H7BXD3 ZNF652;ZBTB47 Zinc finger protein 652;Zinc finger and BTB domain-containing protein 47 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 71.778 56.791 3 0.0081924 1 46485 20150910_Q1_SA_NiHu_Masterprac_group13_C 74.841 24.037 543730 0 0 543730 0 0 0 3851 1631 3808 17026 11304 11304 1 KFSCPICEK Unmodified 1167.5417 0.54165038 1641 Q9Y2Y9;H0YK05 KLF13 Krueppel-like factor 13 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 73.085 62.457 2 0.019979 1 43900 20150910_Q1_SA_NiHu_Masterprac_group10_B 105.4 50.415 4636100 643390 1599600 1738900 0 654240 0 3852 1641 3809 17027;17028;17029;17030 11305 11305 1 KFTTDDSICVLGISK Unmodified 1682.8549 0.85492225 1031 Q01813;H0Y3P8;Q5VSR7;B1APP8;H0Y757 PFKP 6-phosphofructokinase type C yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.78 132.18 3 0.012887 1 85761 20150910_Q1_SA_NiHu_Masterprac_group10_B 40.983 20.201 13050000 0 13050000 0 0 0 0 3853 1031 3810 17031 11306 11306 1 KGAECFEELSK Unmodified 1296.602 0.60200203 869 P23769;P23769-2 GATA2 Endothelial transcription factor GATA-2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 2 2 2 1 87.298 77.493 2;3 5.3933E-29 8 60292 20150910_Q1_SA_NiHu_Masterprac_group13_C 127.02 77.717 20462000 3445000 4940800 4413000 0 2085200 5578400 3854 869 3811 17032;17033;17034;17035;17036;17037;17038;17039;17040;17041 11307;11308;11309;11310;11311;11312;11313;11314 11308 8 KGAVAEDGDELRTEPEAK Unmodified 1913.933 0.93304923 584 G3V3C7;G3V5Q1;G3V3M6;P27695;G3V5D9 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 1 1 70.182 62.972 3;4 3.2087E-58 7 44989 20150910_Q1_SA_NiHu_Masterprac_group10_C 122.75 102.85 16635000 6018900 2249000 2176000 3781300 1232100 1177700 3855 584 3812 17042;17043;17044;17045;17046;17047;17048;17049;17050;17051;17052 11315;11316;11317;11318;11319;11320;11321 11320 7 KGAVEDVISRNEIQGR Unmodified 1769.9384 0.93840938 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 2 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 102.79 95.069 3 0.0084131 2 64980 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.077 41.42 17289000 5320600 0 0 337750 5893500 5736700 3856 578 3813 17053;17054;17055;17056 11322;11323 11322 2 KGDECELLGHSK Unmodified 1371.6453 0.64526383 935 P49411 TUFM Elongation factor Tu, mitochondrial yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 55.418 49.193 3 0.0010013 2 36181 20150910_Q1_SA_NiHu_Masterprac_group10_C 86.803 45.694 2716800 513060 437790 607210 442770 351640 364350 3857 935 3814 17057;17058;17059;17060;17061;17062 11324;11325 11325 2 KGEAMQKLPGTSHGGSK Unmodified 1711.8676 0.86755262 23 A6NHR9;A6NHR9-2 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 40.793 37.333 3 0.0082437 1 25673 20150910_Q1_SA_NiHu_Masterprac_group13_B 67.648 36.577 3209500 0 417480 1501900 450940 0 839130 3858 23 3815 17063;17064;17065;17066 11326 11326 1 KGEFETGFEK Unmodified 1170.5557 0.55570376 642 H3BR35;P15170;P15170-2;F5GWG9;Q8IYD1 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 86.965 75.083 2 0.014251 1 52047 20150910_Q1_SA_NiHu_Masterprac_group10_B 95.094 57.767 7246500 0 2370000 1662900 0 3213600 0 3859 642 3816 17067;17068;17069 11327 11327 1 KGETPTVDGTWKTPSFPK Unmodified 1975.0051 0.005091963 1509 Q9H9L3 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 0 0 2 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 2 1 130.67 129.28 3;4 3.2391E-155 4 85927 20150910_Q1_SA_NiHu_Masterprac_group15_B 150.9 124.96 39829000 0 11591000 0 14015000 0 14224000 3860 1509 3817 17070;17071;17072;17073 11328;11329;11330;11331 11330 4 KGFGEPVLPRPPSLIQNECGQGEQASEK Unmodified 3051.5084 0.508383 535 Q96RL1;F8VQY2;Q96RL1-3;F2Z2T8 UIMC1 BRCA1-A complex subunit RAP80 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 132.92 123.62 4 9.611E-18 2 83844 20150910_Q1_SA_NiHu_Masterprac_group13_C 67.368 51.603 21414000 0 12842000 8571600 0 0 0 3861 535 3818 17074;17075 11332;11333 11332 2 KGFLPETK Unmodified 918.51747 0.51746776 682 I3L1L3;Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 82.304 70.456 2 4.0517E-78 1 54370 20150910_Q1_SA_NiHu_Masterprac_group15_C 155.58 95.107 15085000 0 3469500 5434700 0 6180900 0 3862 682 3819 17076;17077;17078 11334 11334 1 KGGFVPYRDSK Unmodified 1252.6564 0.65642086 768 O95239;O95239-2 KIF4A Chromosome-associated kinesin KIF4A yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 59.145 51.537 3 0.0031133 2 42279 20150910_Q1_SA_NiHu_Masterprac_group13_C 93.442 65.233 7322500 0 2405900 3255300 714170 947160 0 3863 768 3820 17079;17080;17081;17082 11335;11336 11335 2 KGGPSPGDVEAIK Unmodified 1253.6616 0.66156582 814 P09661;H0YLR3;H0YMA0 SNRPA1 U2 small nuclear ribonucleoprotein A' yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 4 3 2 2 4 2 79.572 71.245 2;3 1.0325E-08 8 49774 20150910_Q1_SA_NiHu_Masterprac_group10_B 104.9 42.439 83112000 9949600 22009000 3817400 1848500 18007000 27481000 3864 814 3821 17083;17084;17085;17086;17087;17088;17089;17090;17091;17092;17093;17094;17095;17096;17097;17098;17099 11337;11338;11339;11340;11341;11342;11343;11344 11341 8 KGGSWIQEINVAEK Unmodified 1557.8151 0.81510635 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1 132.71 123.55 2;3 1.1122E-170 8 78938 20150910_Q1_SA_NiHu_Masterprac_group10_C 163.34 107.44 340010000 70607000 55116000 115800000 12727000 0 85756000 3865 1012 3822 17100;17101;17102;17103;17104;17105;17106;17107 11345;11346;11347;11348;11349;11350;11351;11352 11351 8 KGGVSCGTSFRGTVGR Unmodified 1624.8104 0.8103721 1253 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 WAPAL Wings apart-like protein homolog yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 65.351 58.274 4 0.011618 2 41062 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.69 30.364 9660200 528830 1261800 1006200 1239000 1613400 4010800 3866 1253 3823 17108;17109;17110;17111;17112;17113 11353;11354 11353 2 KGIHYWEVELQK Unmodified 1528.8038 0.80381338 1105 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 127.21 119.64 3 0.00010493 2 83242 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.067 56.253 6152800 0 0 0 399720 1948400 3804700 3867 1105 3824 17114;17115;17116 11355;11356 11355 2 KGLEPSQSTAAKVPK Unmodified 1539.8621 0.86205654 588 G3V529;Q9GZR7;F5H4J5 DDX24 ATP-dependent RNA helicase DDX24 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 64.428 57.451 3 6.608E-42 5 46980 20150910_Q1_SA_NiHu_Masterprac_group13_C 120.21 89.163 183300000 29260000 19258000 24594000 20013000 63285000 26886000 3868 588 3825 17117;17118;17119;17120;17121;17122 11357;11358;11359;11360;11361 11357 5 KGMFASTHLILK Unmodified 1344.7588 0.75877744 1351 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 125.84 120.97 3 0.036834 1 82025 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.58 26.312 1323700 0 0 0 0 0 1323700 3869 1351 3826 17123 11362 11362 1 KGNFILSAGVDK Unmodified 1247.6874 0.68738664 185 B7Z475;Q9BZK7 TBL1XR1 F-box-like/WD repeat-containing protein TBL1XR1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 115.34 104.99 3 0.0064437 1 71590 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.956 36.749 1543500 0 0 0 0 302280 1241200 3870 185 3827 17124;17125 11363 11363 1 KGNIILAVSDHISK Unmodified 1493.8566 0.85657723 474 F2Z2E1;Q96EK7;F5GZX9;F5GY05;Q96EK7-2 FAM120B Constitutive coactivator of peroxisome proliferator-activated receptor gamma yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 131.41 113.41 3 0.0098799 1 82160 20150910_Q1_SA_NiHu_Masterprac_group13_C 45.614 17.263 3070200 0 0 3070200 0 0 0 3871 474 3828 17126 11364 11364 1 KGNMDEAHIDQVR Unmodified 1511.7151 0.71507473 1157 Q1ED39 KNOP1 Lysine-rich nucleolar protein 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 63.777 56.816 3 1.5217E-05 3 45750 20150910_Q1_SA_NiHu_Masterprac_group15_C 96.464 79.802 14419000 1619500 1359100 1932700 775760 3874700 4857400 3872 1157 3829 17127;17128;17129;17130;17131;17132 11365;11366;11367 11366 3 KGPQSLFNAPR Unmodified 1213.6568 0.65675521 923 P46087;Q3KQS4;P46087-2;Q05BA7;F5GWB7;F5H709;F5H5X6 NOP2 Putative ribosomal RNA methyltransferase NOP2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 94.454 92.471 3 0.0048796 2 63186 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.627 44.849 2838000 0 1788600 0 0 0 1049400 3873 923 3830 17133;17134 11368;11369 11368 2 KGQEADLEAGGEEVPEANGSAGK Unmodified 2242.0349 0.034948121 1559 Q9NX58 LYAR Cell growth-regulating nucleolar protein yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 92.869 85.04 3 4.6826E-21 4 58184 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.091 78.156 15141000 3432500 2050500 767980 666850 6194000 2028900 3874 1559 3831 17135;17136;17137;17138;17139;17140 11370;11371;11372;11373 11370 4 KGQWDCSVCCVQNESSSLK Unmodified 2270.9718 0.97183605 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 119.93 111.81 3 0.00030281 2 76764 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.118 70.9 10178000 0 1821400 5167100 0 0 3189700 3875 945 3832 17141;17142;17143 11374;11375 11375 2 KGRPDPYAYIPLNR Unmodified 1658.8893 0.88927434 414 Q5JTH9-2;E9PCK7;Q5JTH9;F5H456 RRP12 RRP12-like protein yes no 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 130.62 120.39 3;4 0.00010689 5 85402 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.228 71.286 71301000 15756000 0 12417000 1794100 4707400 36626000 3876 414 3833 17144;17145;17146;17147;17148;17149 11376;11377;11378;11379;11380 11378 5 KGSQDSGAPGEAMER Unmodified 1518.6733 0.67326949 1484 Q9H1J1-3;Q9H1J1-2;Q9H1J1 UPF3A Regulator of nonsense transcripts 3A yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 43.798 39.051 3 0.0041907 2 27765 20150910_Q1_SA_NiHu_Masterprac_group10_B 48.899 48.899 2209400 0 579790 968770 0 0 660840 3877 1484 3834 17150;17151;17152 11381;11382 11382 2 KGSQTNLKDPVGVYCR Unmodified 1820.9203 0.92031648 660 Q02241-2;H7BYN4;Q02241;H0YME6;H0YMJ4 KIF23 Kinesin-like protein KIF23 yes no 0 0 2 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 2 2 1 2 87.034 82.864 3;4 0.0030631 3 56851 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.374 41.745 10130000 882460 2478000 0 1421500 1145800 4202400 3878 660 3835 17153;17154;17155;17156;17157;17158;17159;17160 11383;11384;11385 11384 3 KGTENGVNGTLTSNVADSPRNK Unmodified 2258.1251 0.12510053 153 G3XAN4;B4E0K2;Q15629 TRAM1 Translocating chain-associated membrane protein 1 yes no 0 0 2 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 74.948 69.293 4 3.6687E-06 4 48302 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.259 46.277 7141500 1111800 1756100 0 1727300 1386000 1160300 3879 153 3836 17161;17162;17163;17164;17165 11386;11387;11388;11389 11387 4 KGTGIAAQTAGIAAAAR Unmodified 1526.8529 0.85288884 1015 P82912-2;P82912;P82912-3 MRPS11 28S ribosomal protein S11, mitochondrial yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 103.81 96.394 3 1.4058E-35 5 71384 20150910_Q1_SA_NiHu_Masterprac_group13_C 110.04 84.85 21294000 0 3170800 6360400 0 0 11763000 3880 1015 3837 17166;17167;17168;17169 11390;11391;11392;11393;11394 11390 4 KGTVEGFEPADNK Unmodified 1390.6729 0.67285879 903 P37108;H0YLA2 SRP14 Signal recognition particle 14 kDa protein yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 2 2 3 3 3 69.32 62.19 2;3 6.622E-47 11 43174 20150910_Q1_SA_NiHu_Masterprac_group10_C 127.78 53.826 440770000 91441000 37713000 125940000 59556000 37848000 88277000 3881 903 3838 17170;17171;17172;17173;17174;17175;17176;17177;17178;17179;17180;17181;17182;17183;17184;17185;17186;17187 11395;11396;11397;11398;11399;11400;11401;11402;11403;11404;11405 11403 11 KGTVEGFEPADNKCLLR Unmodified 1932.9727 0.97274598 903 P37108;H0YLA2 SRP14 Signal recognition particle 14 kDa protein yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 2 118.64 108.55 3;4 0.0018901 5 71100 20150910_Q1_SA_NiHu_Masterprac_group13_B 55.097 37.14 22005000 7629900 0 5893300 2796100 1690700 3994800 3882 903 3839 17188;17189;17190;17191;17192;17193;17194;17195;17196 11406;11407;11408;11409;11410 11407 5 KGVLGKSPLSALAR Unmodified 1395.8562 0.8561833 682 I3L1L3;Q9BQG0;Q9BQG0-2;I3L2H8 MYBBP1A Myb-binding protein 1A yes no 0 0 2 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 125.1 114.8 3 8.2206E-08 3 81242 20150910_Q1_SA_NiHu_Masterprac_group13_C 100.11 65.847 18676000 0 1724300 7371800 0 2772800 6807400 3883 682 3840 17197;17198;17199;17200 11411;11412;11413 11411 3 KGVNLPGAAVDLPAVSEK Unmodified 1763.9781 0.97814893 837 P14618;H3BQ34;E9PF79;H3BTN5;P14618-2;P14618-3;H3BSU3;Q504U3;E7EUJ4 PKM;PKM2 Pyruvate kinase PKM;Pyruvate kinase yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 133.12 124.97 2;3 0.0023956 2 79311 20150910_Q1_SA_NiHu_Masterprac_group10_C 47.222 12.37 62683000 56054000 6629000 0 0 0 0 3884 837 3841 17201;17202 11414;11415 11415 2 KGVSQTGTPVCEEDGDAGLGIR Unmodified 2245.0645 0.06447411 1063 Q12888;Q12888-2;F8VY86 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 114.97 104.95 3 0.00043493 4 71878 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.278 39.659 7779900 0 1965300 1800200 0 1596600 2417700 3885 1063 3842 17203;17204;17205;17206 11416;11417;11418;11419 11416 4 KGWLDQEDQEAPLQK Unmodified 1783.8741 0.87407779 1280 Q8IWC1-2;Q8IWC1;H7BY77;Q8IWC1-3 MAP7D3 MAP7 domain-containing protein 3 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 118.82 116.08 3 0.0056445 2 79155 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.68 35.91 2310300 0 1008500 0 0 0 1301800 3886 1280 3843 17207;17208 11420;11421 11420 2 KGWLDQEDQEAPLQKGDAK Unmodified 2155.0546 0.054561351 1280 Q8IWC1-2;Q8IWC1;H7BY77;Q8IWC1-3 MAP7D3 MAP7 domain-containing protein 3 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 115.36 104.1 4 0.0011971 1 68678 20150910_Q1_SA_NiHu_Masterprac_group10_B 56.25 56.25 2822000 613630 468320 1740000 0 0 0 3887 1280 3844 17209;17210;17211 11422 11422 1 KHDADSFYQFSCNICGK Unmodified 2075.8829 0.88294469 677 Q96JP5-2;H9KV86;Q96JP5;H3BTR0 ZFP91;ZFP91-CNTF E3 ubiquitin-protein ligase ZFP91 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 129.58 129.28 3 0.0032853 1 82515 20150910_Q1_SA_NiHu_Masterprac_group13_B 46.162 30.172 4582900 0 2888400 0 1694500 0 0 3888 677 3845 17212;17213 11423 11423 1 KHFTILDAPGHK Unmodified 1362.7408 0.74081919 642 H3BR35;P15170;P15170-2;F5GWG9;Q8IYD1;H3BSV8 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 80.207 71.685 3 0.0076096 2 50609 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.105 24.713 4056600 597620 0 0 0 1559100 1899900 3889 642 3846 17214;17215;17216 11424;11425 11424 2 KHHLQPENPGPGGAAPSLEQNR Unmodified 2333.1625 0.16248909 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 78.582 72.816 4 0.0047921 2 50261 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.642 25.121 6021600 0 0 0 870520 2003900 3147200 3890 1111 3847 17217;17218;17219 11426;11427 11427 2 KHLSSLQLFYGK Unmodified 1419.7874 0.78743503 1458 Q9BWG6-2;Q9BWG6 SCNM1 Sodium channel modifier 1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 130.72 112.72 3 0.0018461 1 81394 20150910_Q1_SA_NiHu_Masterprac_group13_C 69.216 51.494 7506300 0 0 7506300 0 0 0 3891 1458 3848 17220 11428 11428 1 KHPCCVLSNPDQK Unmodified 1581.7392 0.73918099 658 O00712-2;Q5W0Y9;O00712;H7BYE8;Q5VW27;Q5VW29;Q5VW30;Q5VW26 NFIB Nuclear factor 1 B-type;Nuclear factor 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 46.142 44.954 3 0.0011552 1 32253 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.519 54.006 2352600 0 455110 0 385800 0 1511700 3892 658 3849 17221;17222;17223 11429 11429 1 KHPCCVLSNPDQKGK Unmodified 1766.8556 0.85560773 658 O00712-2;Q5W0Y9;O00712;H7BYE8;Q5VW27;Q5VW29;Q5VW30;Q5VW26 NFIB Nuclear factor 1 B-type;Nuclear factor 1 yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 2 2 40.606 35.364 3;4 1.3363E-86 7 24883 20150910_Q1_SA_NiHu_Masterprac_group15_B 137.81 137.81 28686000 3746900 3476900 4350300 2957000 4355900 9799400 3893 658 3850 17224;17225;17226;17227;17228;17229;17230;17231;17232 11430;11431;11432;11433;11434;11435;11436 11434 7 KHPDASVNFSEFSK Unmodified 1591.7631 0.76307078 813 Q5T7C4;Q5T7C6;P09429;Q5T7C0 HMGB1 High mobility group protein B1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 107.9 99.104 3 3.2777E-20 6 72883 20150910_Q1_SA_NiHu_Masterprac_group13_C 108.36 81.766 25841000 3975800 2627100 3564000 4036600 6339100 5298800 3894 813 3851 17233;17234;17235;17236;17237;17238 11437;11438;11439;11440;11441;11442 11438 6 KHPDSSVNFAEFSK Unmodified 1591.7631 0.76307078 315 D6R9A6;P26583 HMGB2 High mobility group protein B2 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 107.19 95.817 3 0.0014558 1 64576 20150910_Q1_SA_NiHu_Masterprac_group10_C 62.081 46.323 1404600 1404600 0 0 0 0 0 3895 315 3852 17239 11443 11443 1 KHQVSVEGTNQTDVK Unmodified 1668.8431 0.84311201 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 43.657 38.418 3 0.00097414 3 27205 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.646 35.971 7035800 627740 1013500 1282700 507270 985980 2618600 3896 1109 3853 17240;17241;17242;17243;17244;17245 11444;11445;11446 11445 3 KHQVSVEGTNQTDVKAVGGPAK Unmodified 2249.1764 0.17640782 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 68.177 60.843 4 3.2418E-17 8 44000 20150910_Q1_SA_NiHu_Masterprac_group10_C 86.213 73.673 18702000 4815700 2299700 2722600 2103700 2628300 4132200 3897 1109 3854 17246;17247;17248;17249;17250;17251;17252 11447;11448;11449;11450;11451;11452;11453;11454 11454 6 KHYEDAQVPLTNHK Unmodified 1678.8427 0.84271808 628 Q6JHV3;H0YMI4;Q9Y6I4;H0YL81;B4DV65;H0YMP6 USP3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 3 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 1 2 2 1 2 58.902 52.493 3;4 1.2814E-20 10 44092 20150910_Q1_SA_NiHu_Masterprac_group13_C 111.31 75.313 21227000 5070000 1442600 2661700 2166300 4069400 5816800 3898 628 3855 17253;17254;17255;17256;17257;17258;17259;17260;17261;17262;17263;17264 11455;11456;11457;11458;11459;11460;11461;11462;11463;11464 11456 9 KHYEDAQVPLTNHKK Unmodified 1806.9377 0.9376811 628 Q6JHV3;H0YMI4;Q9Y6I4;H0YL81;B4DV65;H0YMP6 USP3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 3 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 2 2 2 49.191 43.544 3;4 0.0006762 5 31474 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.911 65.459 50903000 1264000 12724000 10144000 8192200 7286200 11293000 3899 628 3856 17265;17266;17267;17268;17269;17270;17271;17272;17273;17274;17275 11465;11466;11467;11468;11469 11467 5 KIDSAPLALLHK Unmodified 1304.7816 0.78162138 358 O14757-2;F5H7S4;O14757;E7EPP6;E9PPA5 CHEK1 Serine/threonine-protein kinase Chk1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 122.23 121.62 3 0.035188 1 78099 20150910_Q1_SA_NiHu_Masterprac_group10_B 39.016 26.595 991320 0 991320 0 0 0 0 3900 358 3857 17276 11470 11470 1 KIFGCSECEK Unmodified 1256.5529 0.55294335 1419 Q96SL8 FIZ1 Flt3-interacting zinc finger protein 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 55.364 49.139 3 0.0054962 3 35813 20150910_Q1_SA_NiHu_Masterprac_group10_C 72.848 26.458 8461900 1053800 1300100 2592300 713250 1164500 1637900 3901 1419 3858 17277;17278;17279;17280;17281;17282 11471;11472;11473 11473 3 KIFVGGLNPEATEEK Unmodified 1630.8566 0.85663681 318 D6R9P3;D6RD18;Q99729-3;D6RBZ0;Q99729-2 HNRNPAB yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 118.57 115.78 3 0.010557 1 74881 20150910_Q1_SA_NiHu_Masterprac_group10_B 42.388 25.65 1359700 0 733880 0 0 0 625830 3902 318 3859 17283;17284 11474 11474 1 KIGQQPQQPGAPPQQDYTK Unmodified 2108.0651 0.065066458 1366 Q92945-2;Q92945 KHSRP Far upstream element-binding protein 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 2 2 2 2 78.155 71.089 3 0.0002158 11 50435 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.939 47.027 252330000 47714000 52194000 61436000 45911000 40263000 4811600 3903 1366 3860 17285;17286;17287;17288;17289;17290;17291;17292;17293;17294;17295;17296 11475;11476;11477;11478;11479;11480;11481;11482;11483;11484;11485 11483 11 KIGSTENISNTKEPSEK Unmodified 1860.9429 0.94288564 1255 Q7Z6E9;Q7Z6E9-2 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By matching 3 1 1 1 1 55.967 48.791 3;4 0.0017371 6 41122 20150910_Q1_SA_NiHu_Masterprac_group15_C 56.339 44.609 8898400 4499200 997210 1067500 1152000 1182600 0 3904 1255 3861 17297;17298;17299;17300;17301;17302;17303 11486;11487;11488;11489;11490;11491 11488 5 KIHQEGDALPGHSKPSR Unmodified 1855.9653 0.96529283 1157 Q1ED39;H3BPL4 KNOP1 Lysine-rich nucleolar protein 1 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 39.642 34.252 4 0.0020978 2 23581 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.265 48.948 6638500 0 0 815270 688540 2269200 2865600 3905 1157 3862 17304;17305;17306;17307 11492;11493 11492 2 KIKLQTPNTFPK Unmodified 1413.8344 0.83438523 1120 Q14978;Q14978-3;Q14978-2 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 2 2 2 108.54 96.29 3 0.0019852 4 65748 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.709 51.373 68128000 18515000 9970700 8279100 0 29642000 1720300 3906 1120 3863 17308;17309;17310;17311;17312;17313;17314;17315 11494;11495;11496;11497 11495 4 KILCKSPQSDPADTPTNTK Unmodified 2100.0521 0.05211851 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 2 63.698 56.19 3;4 0.00037859 10 41049 20150910_Q1_SA_NiHu_Masterprac_group10_C 73.76 58.32 43838000 4533600 9636200 6686600 1835100 8130100 13016000 3907 919;920 3864 17316;17317;17318;17319;17320;17321;17322;17323;17324;17325;17326;17327;17328 11498;11499;11500;11501;11502;11503;11504;11505;11506;11507 11507 10 KIPQELNNITK Unmodified 1296.7402 0.74015049 1579 Q9P2N5 RBM27 RNA-binding protein 27 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 96.025 93.667 3 0.01265 1 63951 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.34 29.538 0 0 0 0 0 0 0 3908 1579 3865 17329 11508 11508 1 KIQDLSDNREK Unmodified 1344.6997 0.69974224 1470 Q9BZD4 NUF2 Kinetochore protein Nuf2 yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 43.598 33.723 3 0.03166 1 27298 20150910_Q1_SA_NiHu_Masterprac_group13_C 64.73 37.048 556650 0 0 556650 0 0 0 3909 1470 3866 17330 11509 11509 1 KIQNDAGVRIQFK Unmodified 1515.8522 0.85216056 1366;1394 Q92945-2;Q92945;E7EP96;Q96I24;A6NJ37;Q96I24-2 KHSRP;FUBP3 Far upstream element-binding protein 2;Far upstream element-binding protein 3 no no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 99.93 91.8 3 1.9678E-73 5 62078 20150910_Q1_SA_NiHu_Masterprac_group13_B 137.4 104.54 55418000 1102500 5255600 7213500 5703100 8340800 27803000 3910 1366;1394 3867 17331;17332;17333;17334;17335;17336;17337 11510;11511;11512;11513;11514 11510 5 KIQYLIHCQWCEER Unmodified 1961.924 0.92402165 1248 Q7Z2T5;Q7Z2T5-2 TRMT1L TRMT1-like protein yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 129.37 115.8 3 4.7107E-05 2 82615 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.992 67.008 21509000 0 0 13247000 0 2846300 5416100 3911 1248 3868 17338;17339;17340 11515;11516 11515 2 KIRLDTETEGVPSTAIR Unmodified 1885.0269 0.026890038 589 P24941-2;P24941;G3V5T9 CDK2 Cyclin-dependent kinase 2 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 2 2 2 119.68 107.88 3;4 0.0002962 6 70760 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.143 49.871 23864000 956460 1702200 4643000 0 2723000 13839000 3912 589 3869 17341;17342;17343;17344;17345;17346;17347;17348 11517;11518;11519;11520;11521;11522 11521 6 KIRLESEEEGVPSTAIR Unmodified 1913.0218 0.02180466 799 P06493;P06493-2;E5RIU6 CDK1 Cyclin-dependent kinase 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 103.88 101.55 4 0.0029667 1 69325 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.462 47.15 3965900 0 1459100 0 0 0 2506700 3913 799 3870 17349;17350 11523 11523 1 KIRQPAACPGGEEVDGAPR Unmodified 2006.9956 0.99560668 1340 Q8WUA4;Q8WUA4-2 GTF3C2 General transcription factor 3C polypeptide 2 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 74.936 66.062 4 0.0086621 2 45937 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.323 26.665 8967700 276400 2562600 1987800 0 1144700 2996300 3914 1340 3871 17351;17352;17353;17354;17355 11524;11525 11524 2 KISTVVSSKEVNK Unmodified 1417.814 0.81404372 903 P37108;H0YLA2 SRP14 Signal recognition particle 14 kDa protein yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 54.69 48.465 3 1.3219E-73 4 34600 20150910_Q1_SA_NiHu_Masterprac_group15_B 139.19 114.68 72474000 8327000 12450000 13330000 8200400 10624000 19543000 3915 903 3872 17356;17357;17358;17359;17360;17361 11526;11527;11528;11529 11528 4 KITIADCGQLE Unmodified 1246.6227 0.62273747 999 P62937;B4DM82;Q567Q0 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 115.03 105.9 2 2.1094E-41 5 75009 20150910_Q1_SA_NiHu_Masterprac_group15_C 135.1 79.055 391800000 63074000 77194000 73329000 47089000 12773000 118340000 3916 999 3873 17362;17363;17364;17365;17366;17367 11530;11531;11532;11533;11534 11532 5 KIVAIGTSDLDK Unmodified 1258.7133 0.71326704 931 P48507 GCLM Glutamate--cysteine ligase regulatory subunit yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 2 2 103.62 95.197 2;3 0.0015531 2 65027 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.29 55.941 4391200 0 902590 638480 0 0 2850100 3917 931 3874 17368;17369;17370;17371;17372 11535;11536 11535 2 KKAGPGSLELCGLPSQK Unmodified 1768.9506 0.95055397 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 110.87 102.02 3 2.4481E-57 5 67316 20150910_Q1_SA_NiHu_Masterprac_group10_B 119.04 119.04 67286000 17844000 8737600 11742000 10740000 5645700 12576000 3918 1111 3875 17373;17374;17375;17376;17377;17378 11537;11538;11539;11540;11541 11540 5 KKGGPSPGDVEAIK Unmodified 1381.7565 0.75652884 814 P09661;H0YLR3;H0YMA0 SNRPA1 U2 small nuclear ribonucleoprotein A' yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 62.349 57.598 3 3.4153E-05 1 46095 20150910_Q1_SA_NiHu_Masterprac_group15_C 79.614 45.113 9549800 0 2400200 0 504620 3320300 3324700 3919 814 3876 17379;17380;17381;17382 11542 11542 0 KKPNPVEEEPSR Unmodified 1408.731 0.73104237 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 36.099 31.606 3 0.010179 3 21910 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.176 51.422 6648900 0 1743500 2432000 515220 161800 1796300 3920 919;920 3877 17383;17384;17385;17386;17387 11543;11544;11545 11544 3 KLALAGIGQPVKK Unmodified 1321.8446 0.84455598 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 99.372 91.671 3 3.6555E-16 6 62576 20150910_Q1_SA_NiHu_Masterprac_group15_B 112.84 81.774 26145000 0 6869100 6511300 4648500 2141500 5974800 3921 1611 3878 17388;17389;17390;17391;17392 11546;11547;11548;11549;11550;11551 11548 6 KLASQGDSISSQLGPIHPPPR Unmodified 2184.1651 0.16511485 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 3 3 3 125.44 115.76 3;4 1.7323E-34 13 80935 20150910_Q1_SA_NiHu_Masterprac_group13_C 106.89 90.24 147400000 51087000 3685200 52183000 12882000 7135500 20431000 3922 1366 3879 17393;17394;17395;17396;17397;17398;17399;17400;17401;17402;17403;17404;17405;17406 11552;11553;11554;11555;11556;11557;11558;11559;11560;11561;11562;11563;11564 11558 12 KLAVGDNNSKWVK Unmodified 1457.7991 0.79906235 929 P46940;H0YLE8 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 80.094 73.126 3 6.1615E-05 5 51007 20150910_Q1_SA_NiHu_Masterprac_group13_B 98 66.652 10010000 958170 2178400 3615500 3257700 0 0 3923 929 3880 17407;17408;17409;17410 11565;11566;11567;11568;11569 11566 5 KLDDTPSGAGKFPAGHSVIQLAR Unmodified 2364.255 0.25499249 1519 Q9HC52;C9J6K3 CBX8 Chromobox protein homolog 8 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 130.02 125.06 4 0.00028746 1 84769 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.404 34.296 18448000 0 0 0 0 0 18448000 3924 1519 3881 17411 11570 11570 1 KLDVEEPDSANSSFYSTR Unmodified 2043.9385 0.93852854 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;Q9BTE9 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 2 121.44 113.63 2;3 3.3693E-91 7 75568 20150910_Q1_SA_NiHu_Masterprac_group10_C 131.37 119.32 95439000 29672000 9362700 20073000 5360100 16850000 14121000 3925 1121 3882 17412;17413;17414;17415;17416;17417;17418;17419;17420;17421 11571;11572;11573;11574;11575;11576;11577 11576 7 KLEDGPKFLK Unmodified 1173.6758 0.67575932 1006 Q5VTE0;P68104;Q6IQ15;F8W6I0 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 89.372 79.946 2 1.9972E-34 1 54563 20150910_Q1_SA_NiHu_Masterprac_group10_B 136.5 88.541 19736000 0 7254000 0 0 12482000 0 3926 1006 3883 17422;17423 11578 11578 1 KLEELELDEQQRK Unmodified 1656.8683 0.86826413 1034 Q02750-2;Q02750 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 90.723 83.222 3 0.0065816 2 56595 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.976 38.189 5237900 0 842430 1144100 643900 1119200 1488200 3927 1034 3884 17424;17425;17426;17427;17428 11579;11580 11580 1 KLEMCSEIKGPQK Unmodified 1546.7847 0.7847342 1545 Q9NUA8;F8WAI8;B1AKC8 ZBTB40 Zinc finger and BTB domain-containing protein 40 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 83.019 74.497 3 0.013034 1 51395 20150910_Q1_SA_NiHu_Masterprac_group13_B 62.528 35.869 5120600 0 0 1053000 1272000 1410200 1385400 3928 1545 3885 17429;17430;17431;17432 11581 11581 1 KLENCNYAVELGKHPAK Unmodified 1970.0044 0.0043804565 87 B7Z6M1;F8W8D8;B4DGB4;P13797;B4DI60 PLS3 Plastin-3 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 2 2 86.619 78.433 3;4 0.00099908 3 53719 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.826 49.94 13680000 0 2917600 1761400 0 2396600 6604300 3929 87 3886 17433;17434;17435;17436;17437;17438;17439 11582;11583;11584 11584 2 KLFTSPLCDVSK Unmodified 1393.7275 0.72753689 1249 Q7Z2Z1-2;Q7Z2Z1 TICRR Treslin yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.92 125.96 3 0.027882 1 85713 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.234 10.009 0 0 0 0 0 0 0 3930 1249 3887 17440 11585 11585 1 KLFVGGLK Unmodified 860.54837 0.54837396 1074 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 91.606 82.653 2 0.039261 2 55433 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.458 98.458 40549000 4940800 0 5999100 3220100 5523100 20866000 3931 1074 3888 17441;17442;17443;17444;17445 11586;11587 11586 2 KLGAGEGGEASVSPEK Unmodified 1514.7577 0.75765105 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 3 1 2 2 62.325 53.051 2;3 9.1241E-16 6 39937 20150910_Q1_SA_NiHu_Masterprac_group10_C 97.214 60.686 9410700 4638900 778760 1057000 0 2935900 0 3932 383;1082 3889 17446;17447;17448;17449;17450;17451;17452;17453 11588;11589;11590;11591;11592;11593 11593 6 KLGDAEEVESWPK Unmodified 1486.7304 0.73037367 1670 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 2 102.91 95.878 2 0.037486 1 65576 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.098 22.575 18650000 0 1860500 1966200 1577900 2690400 10555000 + 3933 1670 3890 17454;17455;17456;17457;17458;17459 11594 11594 1 KLGNNCVFAPADVTSEK Unmodified 1848.904 0.90399771 1181 Q5H928;Q99714-2;Q99714 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 121.81 112.21 3 0.00058432 4 73288 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.935 54.727 38717000 5518700 2701400 15857000 3696500 1588100 9355600 3934 1181 3891 17460;17461;17462;17463;17464;17465 11595;11596;11597;11598 11597 4 KLHDFQDEIVENSVTKEK Unmodified 2158.0906 0.090612506 1204 Q5VTR2 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 2 2 2 119.94 108.6 3;4 9.4937E-05 4 74462 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.758 62.45 12386000 0 947810 4269500 0 2107300 5061700 3935 1204 3892 17466;17467;17468;17469;17470;17471;17472 11599;11600;11601;11602 11600 4 KLIIVASQAMR Unmodified 1228.7326 0.73256269 1059 Q12789-3;Q12789 GTF3C1 General transcription factor 3C polypeptide 1 yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 113.72 106.75 3 0.00020071 4 73088 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.163 76.956 4066300 0 0 0 634650 681680 2749900 3936 1059 3893 17473;17474;17475 11603;11604;11605;11606 11605 4 KLIQESDQHLKDVEK Unmodified 1808.9632 0.96322715 696 O14776-2;O14776 TCERG1 Transcription elongation regulator 1 yes no 0 0 2 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 71.511 68.403 4 0.00070354 3 48108 20150910_Q1_SA_NiHu_Masterprac_group10_C 76.357 60.97 5853500 1657200 0 0 2214000 0 1982300 3937 696 3894 17476;17477;17478 11607;11608;11609 11609 3 KLLASANLEEVTMK Unmodified 1545.8436 0.84362928 901 P35659;P35659-2;B4DFG0;H0Y993 DEK Protein DEK yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 2 1 131.89 123.22 2;3 4.7906E-199 5 78257 20150910_Q1_SA_NiHu_Masterprac_group10_C 168.93 122.77 87130000 20452000 11674000 24169000 22829000 8005100 0 3938 901 3895 17479;17480;17481;17482;17483;17484 11610;11611;11612;11613;11614 11614 5 KLLASANLEEVTMKQICK Unmodified 2075.1119 0.111882 901 P35659;P35659-2;B4DFG0;H0Y993 DEK Protein DEK yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 132.73 124.16 3 0 4 85394 20150910_Q1_SA_NiHu_Masterprac_group13_B 225.01 167.6 190300000 52370000 15412000 77725000 44794000 0 0 3939 901 3896 17485;17486;17487;17488 11615;11616;11617;11618 11615 4 KLLASANLEEVTMKQICK Oxidation (M) 2091.1068 0.10679662 901 P35659;P35659-2;B4DFG0;H0Y993 DEK Protein DEK yes no 0 1 2 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 130.98 123.13 3 1.8444E-79 2 77159 20150910_Q1_SA_NiHu_Masterprac_group10_C 135.23 95.704 18991000 14236000 0 0 4755000 0 0 3940 901 3896 17489;17490 11619;11620 11620 100 0 KLLDLVQQSCNYK Unmodified 1607.8341 0.83412723 969 P55769;B1AHD1 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1 131.7 124.5 2;3 1.9111E-130 8 83939 20150910_Q1_SA_NiHu_Masterprac_group10_B 155.14 126.5 125120000 18404000 66059000 10148000 10525000 8206400 11781000 3941 969 3897 17491;17492;17493;17494;17495;17496;17497;17498 11621;11622;11623;11624;11625;11626;11627;11628 11627 7 KLLDNSHLPATFK Unmodified 1482.8195 0.81946344 39 Q7Z5J4-3;E7EVZ3;Q7Z5J4;A8MTC3;Q7Z5J4-2;C9JWB0 RAI1 Retinoic acid-induced protein 1 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 130.12 113.28 3 0.0053547 3 75506 20150910_Q1_SA_NiHu_Masterprac_group10_C 55.196 27.515 11449000 5112000 0 6337500 0 0 0 3942 39 3898 17499;17500 11629;11630;11631 11630 3 KLLEDTLFPSSK Unmodified 1376.7551 0.75513185 1399 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.48 131.87 3 0.0047218 1 85388 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.796 39.671 4770500 0 4770500 0 0 0 0 3943 1399 3899 17501 11632 11632 1 KLLNRDIQVGK Unmodified 1282.7721 0.77211932 1509 Q9H9L3 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 0 0 2 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 79.253 71.725 3 0.0044873 4 50092 20150910_Q1_SA_NiHu_Masterprac_group13_B 91.701 39.939 87975000 8251600 14617000 13350000 16438000 15505000 19814000 3944 1509 3900 17502;17503;17504;17505;17506;17507 11633;11634;11635;11636 11633 4 KLLTDGYACEVR Unmodified 1423.7129 0.71294946 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 106.6 97.872 3 0.0009269 4 70642 20150910_Q1_SA_NiHu_Masterprac_group15_C 78.287 51.876 18012000 4475500 1794000 1155700 1359200 4771400 4456300 3945 578 3901 17508;17509;17510;17511;17512;17513 11637;11638;11639;11640 11638 4 KLLVPAAEGEDSLK Unmodified 1468.8137 0.81370936 1412 Q96PU8-3;Q96PU8;Q96PU8-5;Q96PU8-9;Q96PU8-8;Q96PU8-6;H0YG47;F5GXS8;F5GYM3;H0YGD6 QKI Protein quaking yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 119.08 110.09 3 0.0098799 1 79207 20150910_Q1_SA_NiHu_Masterprac_group13_C 45.614 25.507 2271200 0 0 1324200 947010 0 0 3946 1412 3902 17514;17515 11641 11641 1 KLLVPAAEGEDSLKK Unmodified 1596.9087 0.90867238 1412 Q96PU8-3;Q96PU8;Q96PU8-5;Q96PU8-9;Q96PU8-8;Q96PU8-6;H0YG47;F5GXS8;F5GYM3;H0YGD6 QKI Protein quaking yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 102.09 93.592 3 5.6919E-70 6 69920 20150910_Q1_SA_NiHu_Masterprac_group13_C 134.37 54.204 29948000 5609200 11516000 3616500 1969700 2566200 4671000 3947 1412 3903 17516;17517;17518;17519;17520;17521;17522 11642;11643;11644;11645;11646;11647 11643 6 KLNESLDENFKK Unmodified 1463.762 0.76200815 1595 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 yes yes 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 81.397 73.749 3 1.278E-06 4 56524 20150910_Q1_SA_NiHu_Masterprac_group15_C 101.56 69.078 9422800 3659700 820410 691400 971380 1929100 1350800 3948 1595 3904 17523;17524;17525;17526;17527;17528;17529 11648;11649;11650;11651 11650 4 KLPAFATIPIHQLQHEK Unmodified 1970.1102 0.11016616 639 H3BQQ2;Q86UK7-2;Q86UK7-3;Q86UK7 ZNF598 Zinc finger protein 598 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 132.62 127.65 4 0.017017 1 87638 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.477 28.816 17027000 0 0 0 0 0 17027000 3949 639 3905 17530 11652 11652 1 KLPDGMDQLPEK Unmodified 1369.6912 0.69115139 1096 Q14149 MORC3 MORC family CW-type zinc finger protein 3 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 111.84 102.63 3 0.0061479 1 70105 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.425 16.95 4254000 615300 755080 481960 0 0 2401700 3950 1096 3906 17531;17532;17533;17534 11653 11653 1 KLPIVACFHLK Unmodified 1324.7689 0.7689482 1621 Q9UPT9-2;Q9UPT9;Q70EK9 USP22;USP51 Ubiquitin carboxyl-terminal hydrolase 22;Ubiquitin carboxyl-terminal hydrolase 51 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 132.96 125.11 3 0.0013984 3 88187 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.189 63.627 14963000 0 4436900 7377600 0 0 3148500 3951 1621 3907 17535;17536;17537 11654;11655;11656 11655 3 KLPNWQMEVSK Unmodified 1358.7017 0.70165649 1070 Q13118-2;Q13118 KLF10 Krueppel-like factor 10 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 61.449 48.466 3 0.034042 1 39799 20150910_Q1_SA_NiHu_Masterprac_group13_C 41.704 11.7 604720 0 0 604720 0 0 0 3952 1070 3908 17538 11657 11657 1 KLPPPPGSPLGHSPTASPPPTAR Unmodified 2258.2172 0.21715042 212 B7ZM82;B3KVH1;O95785;O95785-2 WIZ Protein Wiz yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 116.82 103.62 4 0.0013884 2 69693 20150910_Q1_SA_NiHu_Masterprac_group10_C 49.433 44.122 18680000 8604800 0 1439200 0 1933700 6702200 3953 212 3909 17539;17540;17541;17542 11658;11659 11659 2 KLPSQPTTDTSTDKER Unmodified 1802.901 0.90102082 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 55.624 46.776 3 0.0097663 1 38789 20150910_Q1_SA_NiHu_Masterprac_group15_C 54.281 25.469 3360800 658500 759180 655430 0 1287600 0 3954 1325 3910 17543;17544;17545;17546 11660 11660 1 KLPTSASVGCDIQNSVGSNIK Unmodified 2174.1001 0.10013134 1492 Q9H582-2;Q9H582;F5H7T9 ZNF644 Zinc finger protein 644 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 131.31 125.88 3 3.1352E-158 2 83704 20150910_Q1_SA_NiHu_Masterprac_group10_B 143.72 114.14 138540000 12413000 92348000 0 33779000 0 0 3955 1492 3911 17547;17548;17549 11661;11662 11661 2 KLQAGSIAIVRQTFNK Unmodified 1773.0261 0.026102177 1314 Q8NB16;I3L4A6 MLKL Mixed lineage kinase domain-like protein yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 130.74 117.17 3 1.1825E-50 2 85067 20150910_Q1_SA_NiHu_Masterprac_group15_B 124.16 95.384 28265000 0 0 19176000 0 2249100 6839500 3956 1314 3912 17550;17551;17552 11663;11664 11664 2 KLQCLNDVLGK Unmodified 1286.7017 0.70165649 1415 Q96QE3;Q96QE3-2 ATAD5 ATPase family AAA domain-containing protein 5 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 113.87 110.73 3 0.017118 1 75961 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.484 6.9822 4751400 0 1622900 0 0 0 3128500 3957 1415 3913 17553;17554 11665 11665 1 KLQEVDSLWK Unmodified 1244.6765 0.6764876 1640 Q9Y2X3;F8WED0 NOP58 Nucleolar protein 58 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 2 2 125.73 121.36 2;3 0.0055785 5 77169 20150910_Q1_SA_NiHu_Masterprac_group10_C 72.434 38.434 18963000 5817100 2278600 0 3237300 0 7630300 3958 1640 3914 17555;17556;17557;17558;17559;17560 11666;11667;11668;11669;11670 11670 5 KLQKQGLLQVTPK Unmodified 1479.9137 0.91369818 908 P40879 SLC26A3 Chloride anion exchanger yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 92.269 84.748 3 0.0048019 1 57822 20150910_Q1_SA_NiHu_Masterprac_group13_B 80.014 41.434 11352000 0 787010 3029300 3541200 196080 3798700 3959 908 3915 17561;17562;17563;17564;17565 11671 11671 1 KLQLEETMPSPYGR Unmodified 1647.829 0.82904185 1035 Q02880-2;Q02880;B4DLV2 TOP2B DNA topoisomerase 2-beta yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 130 129.39 3 0.0010995 1 82861 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.219 48.996 3573300 0 3573300 0 0 0 0 3960 1035 3916 17566 11672 11672 1 KLQLEETMPSPYGRR Unmodified 1803.9302 0.93015288 1035 Q02880-2;Q02880;B4DLV2 TOP2B DNA topoisomerase 2-beta yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 2 1 1 1 123.22 112.53 3;4 5.2906E-14 4 80283 20150910_Q1_SA_NiHu_Masterprac_group13_C 105.95 84.702 19530000 1066300 903750 12481000 1137700 368250 3573100 3961 1035 3917 17567;17568;17569;17570;17571;17572;17573 11673;11674;11675;11676 11674 4 KLQLGIEEDLAEPSK Unmodified 1668.8934 0.89341625 1264 Q86UV5;Q86UV5-2;Q86UV5-3;Q86UV5-7 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 131.71 131.41 3 0.0021771 1 84993 20150910_Q1_SA_NiHu_Masterprac_group10_B 54.811 28.321 9050200 0 7971600 0 1078600 0 0 3962 1264 3918 17574;17575 11677 11677 1 KLQSLQSELQFK Unmodified 1447.8035 0.80347903 176 C9IZM8;B5MEB7;Q8WXE1-3;Q8WXE1-2;Q8WXE1;F8WE08 ATRIP ATR-interacting protein yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 130.92 130.32 3 3.7736E-59 2 86604 20150910_Q1_SA_NiHu_Masterprac_group15_B 137.4 84.185 21212000 0 21212000 0 0 0 0 3963 176 3919 17576;17577 11678;11679 11678 2 KLQVYEGGGQPPPQDLPGSPK Unmodified 2191.1273 0.12733236 675 H9KV46;Q86Y91;Q86Y91-2;Q86Y91-3;Q86Y91-4 KIF18B Kinesin-like protein KIF18B yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 2 113.05 112.71 3 0.0038067 2 73093 20150910_Q1_SA_NiHu_Masterprac_group13_B 42.618 14.452 3728300 0 990320 0 2738000 0 0 3964 675 3920 17578;17579;17580 11680;11681 11681 2 KLRHPTPTMLSIQK Unmodified 1648.9447 0.94468073 696 O14776-2;O14776;G3V220 TCERG1 Transcription elongation regulator 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 96.282 86.982 4 0.0037656 2 59461 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.04 58.04 3438400 0 0 0 0 1105400 2333000 3965 696 3921 17581;17582 11682;11683 11682 2 KLRQYISVK Unmodified 1133.6921 0.69207809 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 71.992 63.594 2 0.00392 1 44486 20150910_Q1_SA_NiHu_Masterprac_group15_B 112.11 16.606 6345000 0 0 0 0 3225500 3119500 3966 1111 3922 17583;17584 11684 11684 1 KLSQLQVEAAR Unmodified 1241.7092 0.70918471 1579 Q9P2N5 RBM27 RNA-binding protein 27 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 77.139 75.107 3 0.0031059 1 51903 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.728 18.561 2858700 0 1037200 0 0 0 1821500 3967 1579 3923 17585;17586 11685 11685 1 KLSVERVYQK Unmodified 1248.719 0.71902112 1035 Q02880-2;Q02880;E9PCY5;Q6LBI8 TOP2B;topIIb DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 74.825 59.511 3 0.027355 1 47410 20150910_Q1_SA_NiHu_Masterprac_group15_C 79.148 29.848 6319200 0 0 4941800 0 1377400 0 3968 1035 3924 17587;17588 11686 11686 1 KLTQTSGETTHTDKVPGGEDK Unmodified 2228.0921 0.092069069 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 1 2 48.761 43.542 3;4 3.3857E-14 9 31040 20150910_Q1_SA_NiHu_Masterprac_group13_B 89.659 71.306 150650000 21309000 28295000 40600000 19025000 5941700 35479000 3969 919;920 3925 17589;17590;17591;17592;17593;17594;17595;17596;17597;17598;17599;17600 11687;11688;11689;11690;11691;11692;11693;11694;11695 11687 9 KLVESLPQEIKANVAK Unmodified 1766.0302 0.030184501 99 P52815;B4DLN1 MRPL12;SLC25A10 39S ribosomal protein L12, mitochondrial yes no 0 0 2 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 130.71 120.38 3 0.004502 2 84865 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.998 39.367 14468000 6909000 0 0 0 0 7559400 3970 99 3926 17601;17602 11696;11697 11696 2 KLYGAQFHPEVGLTENGK Unmodified 1987.0163 0.016325351 129 F8W720;B4DUT7;P49915 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 2 125.34 116.5 3;4 9.712E-59 6 76149 20150910_Q1_SA_NiHu_Masterprac_group10_C 120.9 100.46 69864000 15721000 3222600 35528000 3023900 3020800 9348000 3971 129 3927 17603;17604;17605;17606;17607;17608;17609;17610;17611 11698;11699;11700;11701;11702;11703 11703 5 KLYTGPGLAIHCMQVHK Unmodified 1952.0124 0.012442722 40 A8MTG3;O43670-2;O43670;E1P660;H0Y3M2 ZNF207 Zinc finger protein 207 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 1 120.7 114.16 4 0.00013368 7 78143 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.059 66.059 13627000 1161500 1612300 5378100 2118200 0 3356700 3972 40 3928 17612;17613;17614;17615;17616;17617 11704;11705;11706;11707;11708;11709;11710 11706 5 KMLFDIPQNNYLK Unmodified 1622.849 0.84904901 1669 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 81.271 72.774 3 0.0053241 1 50522 20150910_Q1_SA_NiHu_Masterprac_group13_B 55.258 6.3593 12642000 0 0 5954900 1535800 1987400 3163900 + 3973 1669 3929 17618;17619;17620;17621 11711 11711 1 KMQQENMKPQEQLTLEPYER Unmodified 2519.2148 0.21484352 862 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 123.33 115.55 4 0.00014396 4 75935 20150910_Q1_SA_NiHu_Masterprac_group10_C 65.085 49.922 12823000 6686600 1162000 0 1520500 1621200 1833100 3974 862 3930 17622;17623;17624;17625;17626 11712;11713;11714;11715 11715 4 KMQSTLISAAR Unmodified 1204.6598 0.65979168 162 B4E2Z2;P43246;E9PHA6;E7EU21;B4DL39;B4DSB9;E9PCI8 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 75.46 73.377 3 0.032559 1 50996 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.332 76.332 2785000 0 637250 0 0 0 2147800 3975 162 3931 17627;17628 11716 11716 0 KMRVMSNLVEHNGVLESEAGQPQALGSSGTCSSLK Unmodified 3700.7971 0.79711316 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 2 131.27 131.27 4;5 3.5187E-52 2 84261 20150910_Q1_SA_NiHu_Masterprac_group13_B 87.605 76.747 17091000 0 0 0 17091000 0 0 3976 1111 3932 17629;17630 11717;11718 11718 2 KMRVMSNLVEHNGVLESEAGQPQALGSSGTCSSLK Oxidation (M) 3716.792 0.79202778 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 1 2 By matching By matching By MS/MS By matching By matching By matching 1 130.78 112.79 5 1.3071E-05 1 81452 20150910_Q1_SA_NiHu_Masterprac_group13_C 40.393 34.992 9615500 0 0 9615500 0 0 0 3977 1111 3932 17631 11719 11719 135;136 0 KMSTPIEVLCK Unmodified 1304.6832 0.68322924 932;939 P49674;B0QY35;B0QY34;H0Y645;P48730-2;B4DIJ9;P48730;Q59FJ7;H7BYT1 CSNK1E;CSNK1D Casein kinase I isoform epsilon;Casein kinase I isoform delta no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 120.76 118.02 3 0.0017542 1 80310 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.85 46.404 2961700 0 441190 0 0 0 2520500 3978 939;932 3933 17632;17633 11720 11720 1 KNAAPFRSEVCFGK Unmodified 1609.8035 0.8034958 1455 Q9BVP2-2;Q9BVP2 GNL3 Guanine nucleotide-binding protein-like 3 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 101.21 92.063 4 0.004041 1 62177 20150910_Q1_SA_NiHu_Masterprac_group13_B 57.52 37.739 3359000 0 0 796050 726280 600790 1235900 3979 1455 3934 17634;17635;17636;17637 11721 11721 1 KNEESGAVVVPGTR Unmodified 1441.7525 0.75250609 1624 Q9UQ84-4;Q9UQ84 EXO1 Exonuclease 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 67.71 66.556 3 0.0238 1 46416 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.14 7.2821 605050 0 0 0 0 0 605050 3980 1624 3935 17638 11722 11722 1 KNESPFWK Unmodified 1034.5185 0.5185304 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 89.242 81.762 2 9.7979E-05 1 55688 20150910_Q1_SA_NiHu_Masterprac_group10_B 117.81 76.384 22114000 0 4062700 5060400 1896900 2594200 8499400 3981 919 3936 17639;17640;17641;17642;17643 11723 11723 1 KNHVCQYYIYELQK Unmodified 1884.9193 0.91925384 419 E9PD53;Q9NTJ3;Q9NTJ3-2;E7ET04;C9JR83 SMC4 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 4 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 116.48 111.92 3 0.021481 1 76531 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.033 27.132 1125400 0 0 0 0 0 1125400 3982 419 3937 17644 11724 11724 1 KNIGNGIISSPLTGK Unmodified 1497.8515 0.85149185 1576 Q9P275;Q9P275-2;E9PEW0;F5H3B9 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 125.87 115.5 2;3 5.2047E-20 8 76280 20150910_Q1_SA_NiHu_Masterprac_group10_C 109.1 76.624 57994000 19194000 4940300 16145000 4444200 6069800 7199900 3983 1576 3938 17645;17646;17647;17648;17649;17650;17651 11725;11726;11727;11728;11729;11730;11731;11732 11732 8 KNIVQHTTDSSLEEKQR Unmodified 2012.0287 0.028680952 1490 Q9H501 ESF1 ESF1 homolog yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 54.793 47.648 4 0.003421 1 33839 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.621 37.218 1848100 0 0 0 0 1008100 840020 3984 1490 3939 17652;17653 11733 11733 1 KNLDSTTVAIHDEEIYCK Unmodified 2135.0205 0.020484031 1152 Q16527;F8VW96;F8VQR7 CSRP2 Cysteine and glycine-rich protein 2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 113.96 106.53 3 6.7174E-59 3 70140 20150910_Q1_SA_NiHu_Masterprac_group10_B 122.16 93.029 8487300 0 3691600 0 0 1005200 3790500 3985 1152 3940 17654;17655;17656 11734;11735;11736 11736 3 KNLDSTTVAVHGEEIYCK Unmodified 2062.9994 0.99935466 859 P21291;E9PND2;B3KVC9;E9PS42 CSRP1 Cysteine and glycine-rich protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1 1 105.24 97.11 3;4 3.4451E-210 12 66196 20150910_Q1_SA_NiHu_Masterprac_group15_B 162.26 139.43 58263000 22539000 7399300 3700600 9197500 9613800 5812200 3986 859 3941 17657;17658;17659;17660;17661;17662;17663;17664 11737;11738;11739;11740;11741;11742;11743;11744;11745;11746;11747;11748 11743 12 KNLQYYDISAK Unmodified 1341.6929 0.69286595 173 P62826;B5MDF5;F5H018;B4DV51 RAN GTP-binding nuclear protein Ran yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 3 2 97.301 88.561 2;3 3.0549E-19 10 60715 20150910_Q1_SA_NiHu_Masterprac_group15_B 120.03 92.704 49113000 8112900 5121300 6425200 5665000 11382000 12406000 3987 173 3942 17665;17666;17667;17668;17669;17670;17671;17672;17673;17674;17675;17676;17677;17678 11749;11750;11751;11752;11753;11754;11755;11756;11757;11758 11753 9 KNPASLPLTQAALK Unmodified 1450.8508 0.85076357 1082 Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 1 1 2 4 2 126.25 115.99 2;3 5.0633E-104 8 81539 20150910_Q1_SA_NiHu_Masterprac_group13_C 143.94 108.42 127050000 77576000 8583300 10458000 11453000 4140800 14834000 3988 1082 3943 17679;17680;17681;17682;17683;17684;17685;17686;17687;17688;17689;17690 11759;11760;11761;11762;11763;11764;11765;11766 11759 8 KNPLGNCGDINLVR Unmodified 1568.8093 0.80930946 1250 Q7Z333-3;Q7Z333;Q7Z333-4 SETX Probable helicase senataxin yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 123.48 116.43 3 0.00079328 3 75323 20150910_Q1_SA_NiHu_Masterprac_group10_B 83.204 58.082 3591500 733120 941430 0 0 0 1917000 3989 1250 3944 17691;17692;17693 11767;11768;11769 11769 3 KNQKPSQVNGAPGSPTEPAGQK Unmodified 2219.1295 0.12945763 682 I3L1L3;Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 51.349 45.391 3;4 1.5415E-06 9 31540 20150910_Q1_SA_NiHu_Masterprac_group13_B 64.843 47.918 37073000 4865500 5680900 4144000 3778900 8972600 9630700 3990 682 3945 17694;17695;17696;17697;17698;17699;17700;17701;17702;17703;17704;17705 11770;11771;11772;11773;11774;11775;11776;11777;11778 11770 9 KNVEQNNLSDLIK Unmodified 1513.81 0.81002097 1267 Q86W50;I3L362;Q86W50-2;C9JQI1 METTL16 Methyltransferase-like protein 16 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 126.2 113.35 3 0.0094533 2 75476 20150910_Q1_SA_NiHu_Masterprac_group10_C 49.62 19.053 12321000 3287200 0 7826200 494510 712710 0 3991 1267 3946 17706;17707;17708;17709 11779;11780 11780 2 KNVFMYGCSIK Oxidation (M) 1361.6472 0.64717808 1622 Q9UPW5-2;Q9UPW5;Q9UPW5-3 AGTPBP1 Cytosolic carboxypeptidase 1 yes no 0 1 1 By matching By matching By matching By matching By matching By MS/MS 1 133.45 128.49 2 0.040556 1 88540 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.998 21.57 100800000 0 0 0 0 0 100800000 3992 1622 3947 17710 11781 11781 180 1 KNVGQFSGFPFEK Unmodified 1483.746 0.74596415 901 P35659;P35659-2;B4DFG0;D6R9L5;D6RDA2 DEK Protein DEK yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 2 132.94 130.31 2;3 7.5648E-34 4 85581 20150910_Q1_SA_NiHu_Masterprac_group10_B 121.42 90.269 68206000 0 9754000 0 14632000 0 43820000 3993 901 3948 17711;17712;17713;17714 11782;11783;11784;11785 11785 4 KPKEPQPEQPQPSTSAN Unmodified 1861.917 0.91700524 588 G3V529;Q9GZR7;Q4V9L5;F5GYL3;F5H4V3 DDX24 ATP-dependent RNA helicase DDX24 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 51.167 45.351 3 0.0051952 1 32320 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.728 47.523 5562100 0 801850 476620 838010 1728000 1717600 3994 588 3949 17715;17716;17717;17718;17719 11786 11786 1 KPLNAFMLYMK Oxidation (M) 1370.7091 0.70905006 178 E5RHL1;H0YAR8;Q5JRY4;H0YBC8;Q5JRY5;P36402-10;P36402-14;P36402-16;P36402-8;P36402-6;P36402-2;Q9UJU2-3;E9PDK3;E2GH20;P36402-9;D4PHA3;P36402-13;P36402-15;Q9UJU2-5;P36402-12;P36402-4;P36402-7;P36402-5;P36402;Q9UJU2-6;Q9UJU2;Q9NQB0-10;F8W742;Q9NQB0-9;Q9NQB0-4;B7WNT5;Q9NQB0-6;F8W7T5;Q9NQB0-2;P36402-11;G8JLE2;P36402-3;Q9HCS4;Q9NQB0-8;Q9NQB0-7;Q9NQB0-5;Q9NQB0-3;Q9NQB0 TCF7;TCF7L2;LEF1;TCF7L1 Transcription factor 7;Lymphoid enhancer-binding factor 1;Transcription factor 7-like 2;Transcription factor 7-like 1 yes no 0 1 1 By matching By matching By matching By matching By matching By MS/MS 1 56.192 55.138 3 0.019769 1 39052 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.597 18.419 628970 0 0 0 0 0 628970 3995 178 3950 17720 11787 11787 17 0 KPSMGVFKEK Oxidation (M) 1165.6165 0.61652988 858 Q8IXN4;P20794-3;P20794;P20794-2 MAK Serine/threonine-protein kinase MAK yes no 0 1 2 By matching By MS/MS By matching By matching By matching By matching 1 1 103.89 94.417 2 0.030754 1 63290 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.314 12.007 6348200 0 1764000 0 0 4584200 0 3996 858 3951 17721;17722 11788 11788 92 1 KQAQPSCAPASRPPAK Unmodified 1692.873 0.87297235 1237 Q6W2J9;Q6W2J9-4;Q6W2J9-2;H7BYY2;A6NE70;H7C2V9 BCOR BCL-6 corepressor yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 35.519 30.555 4 0.0025469 2 21740 20150910_Q1_SA_NiHu_Masterprac_group10_C 55.415 39.87 4426700 795910 0 1998300 392100 299320 941020 3997 1237 3952 17723;17724;17725;17726;17727 11789;11790 11790 2 KQEEGAEIQCEAETGGTHK Unmodified 2100.9382 0.93821096 1618 Q9UNY4;Q9UNY4-2 TTF2 Transcription termination factor 2 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching 3 2 3 2 1 1 63.401 55.995 3;4 0.00071035 5 40269 20150910_Q1_SA_NiHu_Masterprac_group10_C 56.906 39.981 15207000 3273200 2832800 3826200 2200400 1491600 1582600 3998 1618 3953 17728;17729;17730;17731;17732;17733;17734;17735;17736;17737;17738;17739 11791;11792;11793;11794;11795 11794 5 KQEGPATQVDSAVGTLPATSPQSTSVQAK Unmodified 2882.4621 0.46214431 383 Q13428-7;E7ETY2;Q13428-6 TCOF1 Treacle protein yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 130.8 113.66 3 3.2912E-31 4 76755 20150910_Q1_SA_NiHu_Masterprac_group10_C 88.834 79.813 43461000 30053000 0 8387600 0 5021000 0 3999 383 3954 17740;17741;17742 11796;11797;11798;11799 11799 4 KQELLEALTK Unmodified 1171.6812 0.68123863 60 B1AHC9;B1AHC8;P12956;F5H1I8 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 129.86 114.17 2 0.030335 1 75475 20150910_Q1_SA_NiHu_Masterprac_group10_C 85.924 46.05 2810600 2810600 0 0 0 0 0 4000 60 3955 17743 11800 11800 1 KQFDAGTVNYEQPTK Unmodified 1724.837 0.836964 620 Q59HE6;H0YGC0;P52756 RBM5 RNA-binding protein 5 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 85.729 83.705 3 0.0041907 2 57258 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.899 48.899 2588700 0 1376500 0 0 0 1212200 4001 620 3956 17744;17745;17746 11801;11802 11801 2 KQFEPVEIKVVK Unmodified 1442.8497 0.84970094 1217 Q68D10-2;Q68D10;Q68D10-3;C9JCH5 SPTY2D1 Protein SPT2 homolog yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 113.32 105.28 3 0.0085565 1 72047 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.36 42.502 6071500 0 1414000 1569700 569020 814010 1704700 4002 1217 3957 17747;17748;17749;17750;17751 11803 11803 1 KQGGLGPMNIPLVSDPK Oxidation (M) 1765.9397 0.93965493 1044 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 131.7 123.55 3 1.5579E-31 7 86578 20150910_Q1_SA_NiHu_Masterprac_group15_B 109.1 87.242 96842000 8121600 10681000 10779000 9393900 7317500 50550000 4003 1044 3958 17752;17753;17754;17755;17756;17757;17758 11804;11805;11806;11807;11808;11809;11810 11807 124 7 KQGGLGPMNIPLVSDPK Unmodified 1749.9447 0.94474031 1044 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 135.36 133.51 3 0.02263 2 86637 20150910_Q1_SA_NiHu_Masterprac_group10_B 35.091 21.226 377180000 0 172440000 0 203220000 0 1514000 4004 1044 3958 17759;17760;17761 11811;11812 11812 2 KQGGLGPMNIPLVSDPKR Unmodified 1906.0459 0.045851341 1044 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 2 By matching By MS/MS By matching By MS/MS By matching By matching 2 2 132.39 132.08 3;4 0.0016759 4 85487 20150910_Q1_SA_NiHu_Masterprac_group13_B 54.073 42.172 22449000 0 13489000 0 8960300 0 0 4005 1044 3959 17762;17763;17764;17765 11813;11814;11815;11816 11813 4 KQHICHIQGCGK Unmodified 1464.7078 0.70782128 804 P08047;G5E9M8 SP1 Transcription factor Sp1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 21.947 20.239 3 0.015007 1 13472 20150910_Q1_SA_NiHu_Masterprac_group10_B 47.971 18.726 265990 0 265990 0 0 0 0 4006 804 3960 17766 11817 11817 1 KQIEHQVLSSECHSK Unmodified 1808.8839 0.88393097 1415 Q96QE3;Q96QE3-2 ATAD5 ATPase family AAA domain-containing protein 5 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 2 2 2 2 2 42.723 37.622 3;4 0.00031348 6 26406 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.578 56.633 13082000 421560 1980700 3060300 997270 1336100 5286500 4007 1415 3961 17767;17768;17769;17770;17771;17772;17773;17774;17775;17776;17777 11818;11819;11820;11821;11822;11823 11820 5 KQIREPVDLQK Unmodified 1352.7776 0.77759863 1626 Q9UQR1;F5H173 ZNF148 Zinc finger protein 148 yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 66.88 59.604 3 0.00020756 5 42199 20150910_Q1_SA_NiHu_Masterprac_group15_B 100.88 12.822 48816000 5961600 7640700 7863700 5557800 9071300 12721000 4008 1626 3962 17778;17779;17780;17781;17782;17783;17784 11824;11825;11826;11827;11828 11826 5 KQISNLQQSISDAEQR Unmodified 1843.9388 0.93880331 789 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 110.61 101.23 3 0.0016348 1 66923 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.546 28.626 2129200 0 1973700 0 0 155470 0 + 4009 789 3963 17785;17786 11829 11829 1 KQLECEQVLQK Unmodified 1401.7286 0.72859953 478 Q8IZ69-2;Q8IZ69;F2Z2W7;F8WB35 TRMT2A tRNA (uracil-5-)-methyltransferase homolog A yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 71.184 65.588 3 3.0245E-08 4 45678 20150910_Q1_SA_NiHu_Masterprac_group15_B 110.08 66.473 5667800 956600 1185200 0 550360 848600 2127100 4010 478 3964 17787;17788;17789;17790;17791 11830;11831;11832;11833 11830 4 KQLEDWLHSK Unmodified 1282.667 0.66698555 1362 Q92878-2;Q92878;Q92878-3;E7EN38;H7C0P8 RAD50 DNA repair protein RAD50 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 107.01 99.05 3 4.3458E-35 1 67496 20150910_Q1_SA_NiHu_Masterprac_group15_B 133.75 110.28 11922000 0 1460000 2387500 1102000 3069100 3903800 4011 1362 3965 17792;17793;17794;17795;17796 11834 11834 1 KQLQAIEFNK Unmodified 1217.6768 0.67682195 600 G5E9Z8;H0YH39;O76094 SRP72 Signal recognition particle subunit SRP72 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 97.342 86.1 3 0.01838 1 63795 20150910_Q1_SA_NiHu_Masterprac_group15_C 55.084 24.287 3361400 401910 0 305610 0 1158400 1495500 4012 600 3966 17797;17798;17799;17800 11835 11835 1 KQNADPQAVTMPATETKK Unmodified 1956.9939 0.99387535 1614 Q9UNF1;Q9UNF1-2;H7BXW3;Q5H907;Q5H909 MAGED2 Melanoma-associated antigen D2 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 70.149 63.431 3 0.012507 2 44327 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.371 39.135 4281900 0 1071400 1939000 0 0 1271600 4013 1614 3967 17801;17802;17803 11836;11837 11836 2 KQNIQEHLGFLQK Unmodified 1581.8627 0.86272524 1085 Q13535-2;Q13535-3;Q13535 ATR Serine/threonine-protein kinase ATR yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 105.94 103.46 3 0.013656 1 70801 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.891 18.337 2610800 0 432030 0 0 0 2178700 4014 1085 3968 17804;17805 11838 11838 1 KQNNFSLAMK Unmodified 1179.607 0.60702783 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 93.191 83.866 2 0.0051538 1 57393 20150910_Q1_SA_NiHu_Masterprac_group15_B 104.82 46.391 12107000 0 901970 1485100 0 2844400 6875500 4015 1012 3969 17806;17807;17808;17809 11839 11839 1 KQPSLPLSEDAHPSVAK Unmodified 1802.9527 0.95266246 580 G3V274;Q9UL15;Q9UL15-2 BAG5 BAG family molecular chaperone regulator 5 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 96.703 94.521 3 0.0012986 1 64695 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.027 48.974 1952600 0 560490 0 0 0 1392100 4016 580 3970 17810;17811 11840 11840 1 KQQASASTDGVDKLSGK Unmodified 1718.8799 0.87989145 569 F8WDE0;P46100-6;P46100-2;P46100-5;P46100-3;P46100-4;P46100 ATRX Transcriptional regulator ATRX yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 54.221 48.063 3 0.00089748 2 34209 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.751 65.338 3980400 801970 799400 784210 354240 405740 834790 4017 569 3971 17812;17813;17814;17815;17816;17817 11841;11842 11842 2 KQQLLATAAHK Unmodified 1207.7037 0.70370541 197 O94762;B7Z8Y7 RECQL5 ATP-dependent DNA helicase Q5 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 44.792 38.149 3 0.025878 1 26984 20150910_Q1_SA_NiHu_Masterprac_group10_B 45.661 18.233 1130900 0 653960 476900 0 0 0 4018 197 3972 17818;17819 11843 11843 1 KQQLLATAAHKDSQSIAR Unmodified 1965.0756 0.075571565 197 O94762;B7Z8Y7 RECQL5 ATP-dependent DNA helicase Q5 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 79.977 64.111 4 0.0013719 1 51865 20150910_Q1_SA_NiHu_Masterprac_group13_C 59.252 43.731 2318700 0 0 1426500 0 892150 0 4019 197 3973 17820;17821 11844 11844 1 KQQNQELQEQLR Unmodified 1540.7958 0.79576789 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;Q9BTE9;H0YH75 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 64.25 59.398 3 0.00093717 4 41981 20150910_Q1_SA_NiHu_Masterprac_group10_B 80.871 52.231 9913500 0 1970700 0 880360 2587800 4474600 4020 1121 3974 17822;17823;17824;17825 11845;11846;11847;11848 11848 4 KQRLNLVSSSSDGTCVAAR Unmodified 2048.0433 0.043285158 247 I3L4J3;Q7Z3B3;C9JHY2 KANSL1 KAT8 regulatory NSL complex subunit 1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 89.804 80.868 4 0.0059376 1 62243 20150910_Q1_SA_NiHu_Masterprac_group13_C 44.391 29.768 3914500 0 1529400 1047800 590400 746950 0 4021 247 3975 17826;17827;17828;17829 11849 11849 1 KQRPLTASLQCNSTAQTEK Unmodified 2160.0957 0.095714659 1588 Q9UFW8;C9JUJ0 CGGBP1 CGG triplet repeat-binding protein 1 yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 71.837 64.658 4 0.00037216 3 52258 20150910_Q1_SA_NiHu_Masterprac_group13_C 66.977 49.412 11232000 0 1353700 2335100 1305400 2628700 3609400 4022 1588 3976 17830;17831;17832;17833;17834 11850;11851;11852 11851 2 KQSLPATSIPTPASFK Unmodified 1671.9196 0.91957142 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 132.36 124.22 3 0.00091243 2 84722 20150910_Q1_SA_NiHu_Masterprac_group10_B 77.324 45.616 16777000 11742000 5035100 0 0 0 0 4023 945 3977 17835;17836 11853;11854 11853 2 KQTDFEHRIPK Unmodified 1397.7415 0.74154747 1031 Q01813;H0Y3P8;Q5VSR7;B1APP8 PFKP 6-phosphofructokinase type C yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 55.234 54.179 3 0.019404 1 38497 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.412 37.412 1629000 0 0 0 0 0 1629000 4024 1031 3978 17837 11855 11855 1 KQTETEMLYGSAPR Unmodified 1609.777 0.77700628 676 H9KV59;O43663;O43663-2;H0YL53;G3V3N7 PRC1 Protein regulator of cytokinesis 1 no no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 96.811 88.798 3 0.0016175 2 60832 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.657 35.209 31806000 1738200 4948600 3959900 1794400 4066300 15299000 4025 676 3979 17838;17839;17840;17841;17842;17843 11856;11857 11856 2 KQTETEMLYGSAPRTPSK Unmodified 2023.0044 0.004440036 676 H9KV59;O43663;O43663-2;H0YL53;G3V3N7 PRC1 Protein regulator of cytokinesis 1 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 93.448 85.723 3;4 9.1643E-32 11 58228 20150910_Q1_SA_NiHu_Masterprac_group13_B 108.96 84.912 73638000 4612000 10650000 16154000 11598000 13463000 17161000 4026 676 3980 17844;17845;17846;17847;17848;17849;17850;17851;17852;17853;17854 11858;11859;11860;11861;11862;11863;11864;11865;11866;11867;11868 11858 11 KQTGSGPLGNSYVER Unmodified 1591.7954 0.79543354 503 F5H082;Q9UER7;Q9UER7-2 DAXX Death domain-associated protein 6 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 83.228 75.634 3 0.0017781 3 52216 20150910_Q1_SA_NiHu_Masterprac_group10_B 56.774 33.889 19748000 966320 1949600 1733400 1262500 1885400 11951000 4027 503 3981 17855;17856;17857;17858;17859;17860 11869;11870;11871 11870 3 KQTTLAFKPIK Unmodified 1273.7758 0.77580772 655 P11388;H7BXX8;P11388-2;P11388-3;P11388-4;C9J5P2;H7BXH5 TOP2A DNA topoisomerase 2-alpha yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 1 2 2 89.623 82.269 2;3 3.1337E-12 4 55772 20150910_Q1_SA_NiHu_Masterprac_group10_B 114.71 66.816 30039000 1939400 5690300 4011400 1718600 3173000 13506000 4028 655 3982 17861;17862;17863;17864;17865;17866;17867;17868;17869 11872;11873;11874;11875 11874 3 KQVCGDSIKPEETEQEVAADETR Unmodified 2618.213 0.21298884 1389 Q96GM8;B4DEM6 TOE1 Target of EGR1 protein 1 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 1 99.862 91.666 3;4 2.6967E-08 7 61575 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.041 56.093 54910000 10500000 22930000 17547000 3933700 0 0 4029 1389 3983 17870;17871;17872;17873;17874;17875 11876;11877;11878;11879;11880;11881;11882 11879 6 KQVEVLAENIQDTK Unmodified 1613.8625 0.86245047 1415 Q96QE3;Q96QE3-2 ATAD5 ATPase family AAA domain-containing protein 5 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 106.01 96.257 3 0.00070042 2 64374 20150910_Q1_SA_NiHu_Masterprac_group10_B 80.719 57.734 10426000 0 4025800 6400300 0 0 0 4030 1415 3984 17876;17877 11883;11884 11884 2 KQVSSHLQVLAR Unmodified 1364.7888 0.78883202 606 H0Y3A6 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 70.068 62.634 3 0.0012493 7 44664 20150910_Q1_SA_NiHu_Masterprac_group10_C 74.698 25.418 19469000 4288100 2036200 1568600 1778900 3955500 5841700 4031 606 3985 17878;17879;17880;17881;17882;17883;17884 11885;11886;11887;11888;11889;11890;11891 11891 7 KQWDSVVLER Unmodified 1258.667 0.66698555 1443 Q9BRX2 PELO Protein pelota homolog yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 118.23 109 3 0.00053827 3 74753 20150910_Q1_SA_NiHu_Masterprac_group15_B 104.82 79.482 20895000 2305700 3482600 4301000 1578800 2669200 6558200 4032 1443 3986 17885;17886;17887;17888;17889;17890 11892;11893;11894 11892 3 KRAFQLEEGEETEPDCK Unmodified 2064.9422 0.94223371 904 P38432 COIL Coilin yes yes 0 0 2 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 86.614 79.194 3 0.0075246 5 54174 20150910_Q1_SA_NiHu_Masterprac_group10_B 53.255 41.848 8825400 0 1435000 2189700 1394000 1743000 2063700 4033 904 3987 17891;17892;17893;17894;17895 11895;11896;11897;11898;11899 11899 5 KRGAPPSSNIEDFHGLLPK Unmodified 2062.096 0.095972656 52 P43243;A8MXP9;D6REM6;D6R991;H0Y8T4 MATR3 Matrin-3 yes no 0 0 2 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 2 1 130.83 123.57 4;5 0.00034726 4 82205 20150910_Q1_SA_NiHu_Masterprac_group13_C 73.252 58.059 25762000 0 3431400 8065300 12500000 1766000 0 4034 52 3988 17896;17897;17898;17899;17900 11900;11901;11902;11903 11903 4 KRPEPSSDYDLSPAK Unmodified 1688.837 0.836964 1237 Q6W2J9;Q6W2J9-4;Q6W2J9-2;A6NE70;H7C2V9;H7C231;H7BZ37 BCOR BCL-6 corepressor yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 66.407 65.253 3 0.0017137 1 45472 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.898 48.473 659570 0 0 0 0 0 659570 4035 1237 3989 17901 11904 11904 1 KRTVTAAGAENIQQK Unmodified 1613.8849 0.88491725 1159 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 45.079 39.805 3;4 0.0011944 7 28332 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.045 47.985 25252000 2094500 4441300 6443300 2973800 3759700 5539500 4036 1159 3990 17902;17903;17904;17905;17906;17907;17908;17909;17910;17911;17912 11905;11906;11907;11908;11909;11910;11911 11909 7 KSAEFLLHMLK Unmodified 1315.7322 0.73222834 855 P18621;B4E3C2 RPL17 60S ribosomal protein L17 yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 133.09 124.17 3 2.2086E-55 2 82142 20150910_Q1_SA_NiHu_Masterprac_group15_C 139.31 139.31 23857000 0 0 0 13348000 10509000 0 4037 855 3991 17913;17914 11912;11913 11913 2 KSCCSCCPVGCAK Unmodified 1572.5975 0.59754383 303 Q8N339;P80297;P13640-2;P04732;P02795;CON__P67983;P13640 MT1M;MT1X;MT1G;MT1E;MT2A Metallothionein-1M;Metallothionein-1X;Metallothionein-1G;Metallothionein-1E;Metallothionein-2 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 35.48 29.889 3 0.030093 1 23972 20150910_Q1_SA_NiHu_Masterprac_group13_C 38.3 37.266 894700 0 266650 628050 0 0 0 + 4038 303 3992 17915;17916 11914 11914 1 KSCVEEPEPEPEAAEGDGDK Unmodified 2171.9165 0.91647247 954 P51858;A8K8G0;Q5SZ08;Q5SZ07;B7Z525 HDGF Hepatoma-derived growth factor yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 76.692 69.214 3 8.1081E-05 5 49553 20150910_Q1_SA_NiHu_Masterprac_group10_C 65.184 60.932 13700000 1618700 1479100 2858100 2509700 3262500 1971400 4039 954 3993 17917;17918;17919;17920;17921;17922 11915;11916;11917;11918;11919 11919 5 KSDGACDSPSSDKENSSQIAQDHQK Unmodified 2718.1787 0.1787286 1596 Q9UIG0-2;Q9UIG0 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 41.942 36.819 4 0.0028811 5 25895 20150910_Q1_SA_NiHu_Masterprac_group10_B 48.51 38.755 9722300 1330900 1640900 2454300 1322100 1269500 1704600 4040 1596 3994 17923;17924;17925;17926;17927;17928 11920;11921;11922;11923;11924 11923 5 KSEIEYYAMLAK Unmodified 1444.7272 0.72720254 342 E5RI99;P62888 RPL30 60S ribosomal protein L30 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 132.82 121.64 3 1.3658E-79 3 79080 20150910_Q1_SA_NiHu_Masterprac_group10_C 144.28 111.75 52512000 26016000 0 0 18757000 7737900 0 4041 342 3995 17929;17930;17931 11925;11926;11927 11927 3 KSEIEYYAMLAK Oxidation (M) 1460.7221 0.72211717 342 E5RI99;P62888 RPL30 60S ribosomal protein L30 yes no 0 1 1 By MS/MS By matching By matching By matching By matching By matching 2 131.98 116.29 2;3 2.0632E-06 2 77568 20150910_Q1_SA_NiHu_Masterprac_group10_C 101.45 63.007 11503000 11503000 0 0 0 0 0 4042 342 3995 17932;17933 11928;11929 11929 31 1 KSEKPLENGTGFQAQDISGQK Unmodified 2261.1288 0.12878893 945 P49792;E9PGT0 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 96.117 88.188 3;4 1.2801E-22 16 66679 20150910_Q1_SA_NiHu_Masterprac_group13_C 96.379 71.998 50970000 9275300 8648200 11674000 5110700 6684400 9578000 4043 945 3996 17934;17935;17936;17937;17938;17939;17940;17941;17942;17943;17944;17945 11930;11931;11932;11933;11934;11935;11936;11937;11938;11939;11940;11941;11942;11943;11944;11945 11933 16 KSFDANGASTLSKLPTPTSSVPAQK Unmodified 2531.3231 0.32313164 1446 Q9BTA9-2;Q9BTA9;B4DMH1;Q9BTA9-3 WAC WW domain-containing adapter protein with coiled-coil yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 129.93 129.32 4 1.5817E-15 1 82795 20150910_Q1_SA_NiHu_Masterprac_group10_B 77.657 65.154 6631900 0 6631900 0 0 0 0 4044 1446 3997 17946 11946 11946 1 KSGGATIEELTEK Unmodified 1361.7038 0.70382456 854 P18583-2;P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;H7C2G8;H7C1M2 SON Protein SON yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 91.077 83.365 3 0.0015517 4 56798 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.244 38.128 4812500 792980 868830 767230 1053500 340820 989210 4045 854 3998 17947;17948;17949;17950;17951;17952 11947;11948;11949;11950 11948 4 KSIDKDEEFAGSSPQSSK Unmodified 1938.9171 0.91706482 1634 Q9Y2M0-2;Q9Y2M0;H3BQ24 FAN1 Fanconi-associated nuclease 1 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 61.654 52.731 4 0.0015679 1 43080 20150910_Q1_SA_NiHu_Masterprac_group15_C 55.912 44.569 3093500 764090 0 871960 710170 747300 0 4046 1634 3999 17953;17954;17955;17956 11951 11951 1 KSIDSFGQVSHPK Unmodified 1428.7361 0.73612775 659 Q86XZ4;H7BYM7 SPATS2 Spermatogenesis-associated serine-rich protein 2 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 72.091 65.272 3 0.0040663 1 52759 20150910_Q1_SA_NiHu_Masterprac_group13_C 57.794 41.02 2431300 0 705090 500340 0 0 1225900 4047 659 4000 17957;17958;17959 11952 11952 1 KSLESINSRLQLVMK Oxidation (M) 1760.9819 0.9818541 342 E5RI99;P62888;E5RJH3 RPL30 60S ribosomal protein L30 yes no 0 1 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 2 119.4 110.61 3 0.0051081 4 72021 20150910_Q1_SA_NiHu_Masterprac_group13_B 71.933 49.568 106360000 6216200 12006000 13386000 36238000 1807600 36711000 4048 342 4001 17960;17961;17962;17963;17964;17965;17966;17967;17968;17969;17970 11953;11954;11955;11956 11953 32 4 KSLESINSRLQLVMK Unmodified 1744.9869 0.98693948 342 E5RI99;P62888;E5RJH3 RPL30 60S ribosomal protein L30 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 5 1 5 4 1 132.15 125 2;3;4 1.5079E-200 13 86734 20150910_Q1_SA_NiHu_Masterprac_group15_B 172.58 122.11 3226100000 728850000 294350000 168140000 1713900000 186010000 134810000 4049 342 4001 17971;17972;17973;17974;17975;17976;17977;17978;17979;17980;17981;17982;17983;17984;17985;17986;17987;17988 11957;11958;11959;11960;11961;11962;11963;11964;11965;11966;11967;11968;11969 11961 13 KSLPVPGALEQVASR Unmodified 1550.878 0.87804096 212 B7ZM82;B3KVH1 WIZ yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.88 131.27 3 0.0028069 1 84799 20150910_Q1_SA_NiHu_Masterprac_group10_B 52.52 16.711 10384000 0 10384000 0 0 0 0 4050 212 4002 17989 11970 11970 1 KSMVKGLDSYEEK Unmodified 1512.7494 0.74939455 1263 Q86UT8;E9PJ16 CCDC84 Coiled-coil domain-containing protein 84 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 79.372 71.844 3 0.0069708 3 49917 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.708 46.941 12982000 1536500 2474000 2819000 1468500 1479300 3205000 4051 1263 4003 17990;17991;17992;17993;17994;17995 11971;11972;11973 11973 3 KSPDSDVAATLK Unmodified 1230.6456 0.6455814 734 O60841 EIF5B Eukaryotic translation initiation factor 5B yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 2 69.612 65.125 2;3 0.0222 2 45458 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.594 18.719 3187300 0 0 0 506230 1413000 1268100 4052 734 4004 17996;17997;17998;17999 11974;11975 11974 1 KSPDSDVAATLKK Unmodified 1358.7405 0.74054442 734 O60841 EIF5B Eukaryotic translation initiation factor 5B yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 69.844 55.306 3 5.0161E-05 1 44546 20150910_Q1_SA_NiHu_Masterprac_group15_C 98.582 65.525 1811700 0 0 0 0 1811700 0 4053 734 4005 18000 11976 11976 1 KSPEGLISR Unmodified 985.55564 0.55564418 1576 Q9P275;Q9P275-2;E9PEW0;F5H3B9 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 64.624 57.63 2 0.00023969 1 40933 20150910_Q1_SA_NiHu_Masterprac_group15_B 112.85 27.685 14836000 2114000 1280800 1736400 1035700 3287400 5381700 4054 1576 4006 18001;18002;18003;18004;18005;18006 11977 11977 1 KSPGVAAAVAEDGGLK Unmodified 1468.7886 0.78855725 468 E9PQV9;Q9BTE7;E9PLH8;E9PM78;H0YD80;E9PLS2;E9PM04 DCUN1D5 DCN1-like protein 5 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 94.925 93.746 3 0.0036966 1 64102 20150910_Q1_SA_NiHu_Masterprac_group15_B 47 19.324 1146700 0 0 0 253070 0 893640 4055 468 4007 18007;18008 11978 11978 1 KSPLAMSHASGVK Unmodified 1311.6969 0.69690547 1157 Q1ED39 KNOP1 Lysine-rich nucleolar protein 1 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 58.362 51.153 3 0.0014538 2 37192 20150910_Q1_SA_NiHu_Masterprac_group10_C 64.52 37.631 19014000 2819100 0 4117600 1996500 4313800 5767000 4056 1157 4008 18009;18010;18011;18012;18013 11979;11980 11980 2 KSPLAQDSPSQGSPALYR Unmodified 1900.9643 0.96428978 1219 Q69YH5;E9PEI0 CDCA2 Cell division cycle-associated protein 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 100.24 97.279 3 0.00477 1 66275 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.633 31.258 2515100 0 0 0 0 0 2515100 4057 1219 4009 18014 11981 11981 1 KSPMLCGQYPVKSEGK Unmodified 1807.8961 0.89607556 440 O94916-2;O94916-3;O94916;O94916-4;E9PHR7 NFAT5 Nuclear factor of activated T-cells 5 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 84.028 75.557 3 0.016394 1 52928 20150910_Q1_SA_NiHu_Masterprac_group10_C 49.595 30.806 807150 807150 0 0 0 0 0 4058 440 4010 18015 11982 11982 1 KSPVGKSPPSTGSTYGSSQK Unmodified 1978.996 0.99598384 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 2 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 1 2 1 2 2 51.112 44.364 3;4 0.011207 4 36984 20150910_Q1_SA_NiHu_Masterprac_group15_C 47.082 19.819 15746000 2420100 1951200 4085300 1765400 3134600 2389100 4059 1639 4011 18016;18017;18018;18019;18020;18021;18022;18023;18024;18025 11983;11984;11985;11986 11984 4 KSQDFGNLFSFPSYSQK Unmodified 1978.9425 0.94249171 1035 Q02880-2;Q02880;B4DLV2 TOP2B DNA topoisomerase 2-beta yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 133.89 128.93 3 0.00022571 1 89086 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.564 46.435 146250000 0 0 0 0 0 146250000 4060 1035 4012 18026 11987 11987 0 KSQEIPQQMNGSDCGMFACK Unmodified 2314.9803 0.98029225 1573 Q9P0U3 SENP1 Sentrin-specific protease 1 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 128.53 112.84 3 0.030394 1 74572 20150910_Q1_SA_NiHu_Masterprac_group10_C 29.842 21.003 676320 676320 0 0 0 0 0 4061 1573 4013 18027 11988 11988 1 KSSTLTSSRLATGEEEGGGSSSK Unmodified 2255.0877 0.087711973 666 H7C1H8;P00519;P00519-2 ABL1 Tyrosine-protein kinase ABL1 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 60.864 55.62 4 0.0079709 5 39640 20150910_Q1_SA_NiHu_Masterprac_group10_C 44.963 29.302 6326500 866200 1321000 2267600 1041300 0 830380 4062 666 4014 18028;18029;18030;18031;18032 11989;11990;11991;11992;11993 11993 3 KSTLASVNIQALPDKGQK Unmodified 1897.0633 0.063275544 1618 Q9UNY4;Q9UNY4-2 TTF2 Transcription termination factor 2 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 117.67 106.95 3 0.021395 1 71417 20150910_Q1_SA_NiHu_Masterprac_group10_C 44.998 33.828 4226400 814160 0 955950 764700 542140 1149500 4063 1618 4015 18033;18034;18035;18036;18037 11994 11994 1 KSVAEGLSGSLVQEPFQLATEK Unmodified 2317.2165 0.2165413 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 135.54 135.54 3 0.024793 1 88613 20150910_Q1_SA_NiHu_Masterprac_group13_B 29.855 11.84 2403300 0 0 0 2403300 0 0 4064 1611 4016 18038 11995 11995 1 KSVESTCLCFAR Unmodified 1456.6803 0.68026913 1122 Q14CA3;Q14669;Q14CF1 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 1 1 98.343 93.65 3 0.0022175 2 62780 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.234 55.103 7442500 0 4531400 1329500 362840 0 1218800 4065 1122 4017 18039;18040;18041;18042;18043 11996;11997 11997 2 KSVPGVCGASQTHQKPQNGEK Unmodified 2236.1019 0.10186267 1635 Q9Y2R4;F5H5G9;F5H0R7 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 40.402 34.938 4 1.4659E-05 5 25241 20150910_Q1_SA_NiHu_Masterprac_group10_C 71.434 62.675 20742000 2763100 0 3802300 4296100 3923100 5957700 4066 1635 4018 18044;18045;18046;18047;18048 11998;11999;12000;12001;12002 12002 5 KSYDDAESLK Unmodified 1154.5455 0.54553301 1035 Q02880-2;Q02880;E9PCY5 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 51.201 47.657 2 0.016235 1 33989 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.561 60.864 3578400 378110 474880 0 0 0 2725400 4067 1035 4019 18049;18050;18051 12003 12003 1 KSYDDAESLKTLR Unmodified 1524.7784 0.77838649 1035 Q02880-2;Q02880;E9PCY5 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 92.109 80.513 3 0.014089 1 55253 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.035 50.326 4026300 0 0 550960 0 1329400 2146000 4068 1035 4020 18052;18053;18054 12004 12004 1 KTAEAGGVTGKGQDGIGSK Unmodified 1759.9064 0.90644055 815 P09874;F8WC10 PARP1 Poly [ADP-ribose] polymerase 1 yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 2 43.072 37.5 3;4 0.00029324 8 31607 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.361 56.569 30679000 3878800 3266300 5976100 3961700 5563800 8032200 4069 815 4021 18055;18056;18057;18058;18059;18060;18061;18062;18063;18064;18065;18066;18067 12005;12006;12007;12008;12009;12010;12011;12012 12010 8 KTAEEEELAEEK Unmodified 1404.662 0.66201933 27 F5H101;Q76FK4-2;Q76FK4-4;A6NJK7;Q76FK4;F8WE42;Q76FK4-3 NOL8 Nucleolar protein 8 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 54.273 50.589 3 4.1221E-05 2 35599 20150910_Q1_SA_NiHu_Masterprac_group13_B 97.779 39.893 3576300 2662800 0 0 913480 0 0 4070 27 4022 18068;18069 12013;12014 12013 1 KTAEEEELAEEKK Unmodified 1532.757 0.75698235 27 F5H101;Q76FK4-2;Q76FK4-4;A6NJK7;Q76FK4;F8WE42;Q76FK4-3 NOL8 Nucleolar protein 8 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 45.349 41.208 3 4.6E-46 3 33275 20150910_Q1_SA_NiHu_Masterprac_group13_C 127.3 127.3 22964000 4066700 3508600 6969800 2815700 0 5602900 4071 27 4023 18070;18071;18072;18073;18074 12015;12016;12017 12016 3 KTEDEHFEFHSRPCPTK Unmodified 2143.9745 0.97453689 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 2 1 72.195 63.741 4;5 0.0033086 4 44340 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.327 46.148 60670000 0 5772900 21673000 8304500 13839000 11081000 4072 1611 4024 18075;18076;18077;18078;18079;18080;18081;18082 12018;12019;12020;12021 12020 3 KTEELEEESFPER Unmodified 1621.7471 0.74714594 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 102.61 90.99 3 0.032951 2 62169 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.366 25.212 7055700 1407400 0 1693300 0 1027100 2928000 4073 1639 4025 18083;18084;18085;18086 12022;12023 12022 1 KTEELEEESFPERSK Unmodified 1836.8741 0.87413737 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 82.069 76.333 3 0.0078575 2 52287 20150910_Q1_SA_NiHu_Masterprac_group13_B 61.186 61.186 4867600 347550 685620 0 1145600 1295900 1393000 4074 1639 4026 18087;18088;18089;18090;18091 12024;12025 12024 2 KTEILDPDTLENQATVEFHSGDK Unmodified 2586.2449 0.2449409 1353 Q92576-2;Q92576;E7EVH3;E9PE34;B3KP41;E7ER40 PHF3 PHD finger protein 3 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 2 133.38 133.18 3;4 9.3049E-22 2 86496 20150910_Q1_SA_NiHu_Masterprac_group13_B 94.359 78.919 57796000 0 21055000 0 36742000 0 0 4075 1353 4027 18092;18093;18094 12026;12027 12026 2 KTEVLMENFRR Unmodified 1421.7449 0.74491829 1629 Q9Y265;Q9Y265-2;E7ETR0 RUVBL1 RuvB-like 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 98.532 89.483 3 0.03457 1 61276 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.624 34.08 10303000 0 0 848770 543590 3173700 5737400 4076 1629 4028 18095;18096;18097;18098 12028 12028 1 KTGSPEIKLK Unmodified 1099.6601 0.66010926 210 Q9BZ95-4;C9JY66;Q9BZ95-2;B7ZL11;Q9BZ95;Q9BZ95-3;E9PKA2 WHSC1L1 Histone-lysine N-methyltransferase NSD3 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 134.23 131.75 2 6.3904E-14 1 84754 20150910_Q1_SA_NiHu_Masterprac_group13_B 121.5 4.1907 6439900000 0 0 0 6438100000 0 1819400 4077 210 4029 18099;18100 12029 12029 1 KTHQPSDEVGTSIEHPR Unmodified 1916.9341 0.93405228 1428 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 65.751 55.724 4 9.8308E-09 6 44987 20150910_Q1_SA_NiHu_Masterprac_group15_C 94.569 94.569 5772400 765760 2014000 976180 0 2016400 0 4078 1428 4030 18101;18102;18103;18104 12030;12031;12032;12033;12034;12035 12032 6 KTKPYIQVDIGGGQTK Unmodified 1731.9519 0.95193418 823 P11021;B4DEF7 HSPA5 78 kDa glucose-regulated protein yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching 2 1 1 1 1 1 100.02 91.624 3 0.010361 2 61792 20150910_Q1_SA_NiHu_Masterprac_group10_C 53.519 43.674 18108000 5269900 1893300 2165600 2293000 2364700 4121300 4079 823 4031 18105;18106;18107;18108;18109;18110;18111 12036;12037 12037 2 KTLCGTPNYIAPEVLSK Unmodified 1889.9921 0.99208444 962 P53350;B4E083 PLK1 Serine/threonine-protein kinase PLK1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.58 130.97 3 3.1173E-45 1 84435 20150910_Q1_SA_NiHu_Masterprac_group10_B 117.27 79.048 15181000 0 15181000 0 0 0 0 4080 962 4032 18112 12038 12038 1 KTLEEPVSTEKNIG Unmodified 1543.8094 0.80935227 547 Q99590-2;F8VXG7;Q99590 SCAF11 Protein SCAF11 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 84.048 76.469 3 3.1497E-07 2 59634 20150910_Q1_SA_NiHu_Masterprac_group13_C 97.223 97.223 33034000 5730300 2988400 5391800 6388900 7109100 5425800 4081 547 4033 18113;18114;18115;18116;18117;18118 12039;12040 12039 2 KTMENVDSLDK Unmodified 1278.6126 0.61256672 1420 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 67.2 59.053 2 0.025937 2 41716 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.082 29.581 1799800 0 0 0 0 874000 925830 4082 1420 4034 18119;18120 12041;12042 12041 2 KTNYLVMGRDSGQSK Unmodified 1682.841 0.84100352 896 P35251-2;P35251;H0Y8U4 RFC1 Replication factor C subunit 1 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 67.052 62.44 3 0.0022702 2 44871 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.639 48.424 3204500 1494500 0 0 0 0 1710000 4083 896 4035 18121;18122 12043;12044 12043 2 KTPEQLHMLK Unmodified 1223.6696 0.66962808 1604 Q9UKY1;H0YB50 ZHX1 Zinc fingers and homeoboxes protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 69.657 66.647 3 0.030584 1 46566 20150910_Q1_SA_NiHu_Masterprac_group10_B 49.3 29.014 1650500 0 1650500 0 0 0 0 4084 1604 4036 18123 12045 12045 1 KTPESKPTILVK Unmodified 1339.8075 0.80750177 1644 Q9Y3B9 RRP15 RRP15-like protein yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 66.953 59.994 3 0.0062268 2 42185 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.803 58.074 16867000 0 1722800 2745800 969460 3756600 7672400 4085 1644 4037 18124;18125;18126;18127;18128 12046;12047 12046 2 KTPLSTGGTLAFVSPSLAVHK Unmodified 2110.1786 0.17863965 170 Q86YP4;B5MC40;Q86YP4-2;B4DKZ7;F5H7D9;H7C3H1 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 133.4 131.54 3;4 0 2 88621 20150910_Q1_SA_NiHu_Masterprac_group15_B 181.49 160.64 281840000 0 98413000 0 37862000 0 145570000 4086 170 4038 18129;18130;18131 12048;12049 12048 2 KTPPEDCEGPFRPAEILK Unmodified 2083.0408 0.040825542 531 P49790;F6QR24 NUP153 Nuclear pore complex protein Nup153 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 131.63 120.23 3 0.00581 6 82642 20150910_Q1_SA_NiHu_Masterprac_group13_C 54.237 24.514 49348000 9599600 15008000 8404600 0 3425700 12910000 4087 531 4039 18132;18133;18134;18135;18136 12050;12051;12052;12053;12054;12055 12050 6 KTPTPREEADVQK Unmodified 1497.7787 0.77872084 1309 Q8N8Y5 ZFP41 Zinc finger protein 41 homolog yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 42.766 35.496 3 0.026418 1 24851 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.164 34.279 10611000 2168500 2045000 6229000 0 168440 0 4088 1309 4040 18137;18138;18139;18140 12056 12056 1 KTQELAFATHQDPADPK Unmodified 1895.9377 0.93774068 1409 Q96N67-4;Q96N67-3;Q96N67-5;Q96N67-2;Q96N67-6;Q96N67;H0Y7L2;F8W9H6 DOCK7 Dedicator of cytokinesis protein 7 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 93.316 84.159 3 0.010644 1 62555 20150910_Q1_SA_NiHu_Masterprac_group15_C 39.753 16.222 4080000 1242600 0 0 0 1897200 940220 4089 1409 4041 18141;18142;18143 12057 12057 1 KTQMAEVLPSPR Unmodified 1355.7231 0.72312022 655 P11388;H7BXX8;P11388-2;P11388-3;P11388-4;C9J5P2;H7BXH5 TOP2A DNA topoisomerase 2-alpha yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 96.382 94.024 3 0.012109 1 63953 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.467 21.891 1833000 0 0 0 0 0 1833000 4090 655 4042 18144 12058 12058 1 KTQPTVINNLK Unmodified 1254.7296 0.7295858 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 2 2 1 2 79.332 69.596 2;3 3.9583E-07 4 53953 20150910_Q1_SA_NiHu_Masterprac_group15_C 108.98 60.796 6261700 1101800 1144200 1508300 633190 1874200 0 4091 578 4043 18145;18146;18147;18148;18149;18150;18151;18152;18153 12059;12060;12061;12062 12059 3 KTRHQWPSEEASMDLVK Unmodified 2041.0051 0.005108738 423 Q8N556;E9PDT7 AFAP1 Actin filament-associated protein 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 111.15 104 4 0.027931 1 70729 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.477 37.477 2654800 0 0 1336400 572590 0 745850 4092 423 4044 18154;18155;18156 12063 12063 1 KTRSIGSAVDQGNESIVAK Unmodified 1959.0385 0.038517356 1479 Q9H0H5;F8VRD2;F8W1E5 RACGAP1 Rac GTPase-activating protein 1 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 85.687 78.308 4 2.3819E-06 2 60760 20150910_Q1_SA_NiHu_Masterprac_group13_C 87.157 72.93 9352000 0 2782400 2681500 2223900 367240 1297000 4093 1479 4045 18157;18158;18159;18160;18161 12064;12065 12064 2 KTSEVDLAKPLVK Unmodified 1426.8395 0.83953018 429 Q8WUM4;E9PFU1;F8WEQ7;F8WBR8;C9IZF9 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 95.756 87.827 3 0.0069686 1 60191 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.352 31.739 5548300 388160 1022500 1236500 642880 605280 1653000 4094 429 4046 18162;18163;18164;18165;18166;18167 12066 12066 1 KTSFEIAELKER Unmodified 1449.7827 0.78274359 550 F8W0J4;O95619 YEATS4 YEATS domain-containing protein 4 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 110.81 100.85 3 0.01165 1 68724 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.171 45.39 5230800 0 1013500 1150700 0 1039200 2027400 4095 550 4047 18168;18169;18170;18171 12067 12067 1 KTSSQLVTMHDLK Unmodified 1486.7814 0.78136338 657 Q5T7U1;Q9Y5Q8-2;H7BY84;Q9Y5Q8;Q9Y5Q8-3;H0Y5D2;H0Y3Y0;C9J393;H9KV68 GTF3C5 General transcription factor 3C polypeptide 5 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 88.237 79.589 3 0.0023187 1 54635 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.081 22.687 4451100 0 0 960330 360070 1560500 1570200 4096 657 4048 18172;18173;18174;18175 12068 12068 1 KTSTPKINFVGGNK Unmodified 1489.8253 0.8252771 1403 Q96KR1;B5MEH6 ZFR Zinc finger RNA-binding protein yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 94.896 78.104 3 0.01035 1 60562 20150910_Q1_SA_NiHu_Masterprac_group13_C 59.796 34.561 2096400 0 0 2096400 0 0 0 4097 1403 4049 18176 12069 12069 1 KTTALDQLSEK Unmodified 1232.6612 0.66123147 936 P49454 CENPF Centromere protein F yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 2 1 1 75.171 68.285 3 0.0063999 2 54514 20150910_Q1_SA_NiHu_Masterprac_group13_C 62.088 31.199 2500200 0 523900 828480 0 0 1147800 4098 936 4050 18177;18178;18179;18180 12070;12071 12070 2 KTTSVSLTIGSSSPK Unmodified 1491.8144 0.81443765 1343 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-5;Q8WX93-2;Q8WX93-9;D6R9Z5;D6RBH5;D6RBB1;F8WC13;H0Y952;Q8WX93-6 PALLD Palladin yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 1 1 91.549 86.896 3 5.1829E-33 3 59585 20150910_Q1_SA_NiHu_Masterprac_group15_B 119 95.601 7626700 0 1464800 1791400 985590 0 3384900 4099 1343 4051 18181;18182;18183;18184;18185 12072;12073;12074 12073 2 KTTTLSGTAPAAGVVPSR Unmodified 1712.9421 0.94209778 388 E7EVA0;P27816-6;P27816;P27816-2;P27816-4;E9PGM5;P27816-5;B9ZVR1;H0Y2V1;B4DSQ1;F8W9U4;H7C4C5;B5MEG9 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 100.02 92.518 3 0.0050366 2 62819 20150910_Q1_SA_NiHu_Masterprac_group10_C 42.118 18.662 5091100 2341200 0 881000 1195600 0 673270 4100 388 4052 18186;18187;18188;18189 12075;12076 12076 2 KTTTLSGTAPAAGVVPSRVK Unmodified 1940.1055 0.10547471 388 E7EVA0;P27816-6;P27816;P27816-2;P27816-4;E9PGM5;P27816-5;B9ZVR1;H0Y2V1;B4DSQ1;F8W9U4;H7C4C5;B5MEG9 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 100.35 92.187 3;4 6.9104E-52 10 62201 20150910_Q1_SA_NiHu_Masterprac_group13_B 118.23 105.45 61560000 13362000 5629800 8291700 9998300 15166000 9112000 4101 388 4053 18190;18191;18192;18193;18194;18195;18196;18197;18198;18199;18200;18201 12077;12078;12079;12080;12081;12082;12083;12084;12085;12086 12077 10 KTVDMESTEVFTK Unmodified 1513.7334 0.73341013 289 CON__P02663 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 2 2 1 1 2 1 110.16 100.71 2;3 0.0046943 4 67555 20150910_Q1_SA_NiHu_Masterprac_group10_C 56.527 56.527 10695000 3097600 3382900 845200 203000 1920000 1246000 + 4102 289 4054 18202;18203;18204;18205;18206;18207;18208;18209;18210 12087;12088;12089;12090 12090 4 KTVVLPPIVASR Unmodified 1278.8024 0.80235682 97 B4DLG2;O75152;E9PQ61;E9PBY7 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 131.33 124.25 3 4.805E-27 3 83072 20150910_Q1_SA_NiHu_Masterprac_group10_B 122.52 104.8 16665000 3714900 7003000 0 0 0 5947500 4103 97 4055 18211;18212;18213 12091;12092;12093 12092 3 KVAQPPLSAQATGSGQPTRK Unmodified 2021.1018 0.10178632 639 H3BQQ2;Q86UK7-2;Q86UK7-3;Q86UK7;H3BR87;Q86UK7-4 ZNF598 Zinc finger protein 598 yes no 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 66.967 61.432 3 0.0025919 3 42879 20150910_Q1_SA_NiHu_Masterprac_group13_B 55.453 48.749 5707100 364810 1546800 0 1333400 1235700 1226500 4104 639 4056 18214;18215;18216;18217;18218 12094;12095;12096 12094 2 KVCYYYDGDIGNYYYGQGHPMKPHR Unmodified 3080.3698 0.36978103 1358 Q92769;H3BM24 HDAC2 Histone deacetylase 2 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 129.86 124.9 4 7.4599E-05 1 84666 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.488 47.365 2679700 0 0 0 0 0 2679700 4105 1358 4057 18219 12097 12097 1 KVEAPETNIDKTPK Unmodified 1568.841 0.84098675 97 B4DLG2;O75152;E9PQ61;E9PBY7 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 65.994 58.76 3 2.5293E-198 7 43084 20150910_Q1_SA_NiHu_Masterprac_group10_C 169.4 130.36 84919000 17867000 10147000 15082000 11004000 20023000 10796000 4106 97 4058 18220;18221;18222;18223;18224;18225;18226 12098;12099;12100;12101;12102;12103;12104 12104 7 KVEQPVIEEPALK Unmodified 1478.8344 0.83444481 1157 Q1ED39;H3BPL4 KNOP1 Lysine-rich nucleolar protein 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 2 2 2 2 112.64 106.09 2;3 0.0023187 4 75185 20150910_Q1_SA_NiHu_Masterprac_group15_C 62.081 51.8 11340000 1360300 1480400 0 1182600 4071100 3245500 4107 1157 4059 18227;18228;18229;18230;18231;18232;18233;18234;18235 12105;12106;12107;12108 12107 4 KVESTGAVPEFK Unmodified 1290.682 0.68196691 1239 Q6YN16-2;Q6YN16;B4E136;B4DWC7 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 2 1 1 2 1 89.794 81.679 2 0.0077665 3 60994 20150910_Q1_SA_NiHu_Masterprac_group15_C 90.689 69.65 11365000 1536300 2063000 1279400 1349300 2527000 2610400 4108 1239 4060 18236;18237;18238;18239;18240;18241;18242;18243 12109;12110;12111 12110 3 KVESTGAVPEFKEEK Unmodified 1676.8621 0.86211612 1239 Q6YN16-2;Q6YN16;B4E136;B4DWC7 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 81.356 73.693 3 4.799E-124 6 51478 20150910_Q1_SA_NiHu_Masterprac_group10_C 149.35 104.38 49145000 10351000 6560100 7531000 4676700 13648000 6378300 4109 1239 4061 18244;18245;18246;18247;18248;18249;18250 12112;12113;12114;12115;12116;12117 12117 6 KVFVEDDENSSQK Unmodified 1523.7104 0.71036651 1607 Q9ULJ3-2;Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 55.257 47.867 3 0.0020877 5 39444 20150910_Q1_SA_NiHu_Masterprac_group15_C 62.732 35.393 3895300 511730 655690 1346300 0 442370 939210 4110 1607 4062 18251;18252;18253;18254;18255 12118;12119;12120;12121;12122 12120 5 KVLGSSTSATNSTSVSSRK Unmodified 1895.9912 0.99123281 1124 Q15004;H0YMA4;A6NNU5 KIAA0101 PCNA-associated factor yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 47.38 41.945 3 0.0043256 2 29793 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.337 55.337 7568500 0 1568000 1483800 716470 690540 3109600 4111 1124 4063 18256;18257;18258;18259;18260 12123;12124 12124 2 KVLKGEVTPDHLIR Unmodified 1603.941 0.94097556 1353 Q92576-2;Q92576;E7EVH3;E7ER40 PHF3 PHD finger protein 3 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 96.188 86.938 4 0.0014427 2 59425 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.277 55.76 5562300 0 0 0 0 1933700 3628600 4112 1353 4064 18261;18262 12125;12126 12125 2 KVNPDLQVEVKPSIR Unmodified 1720.9836 0.98356866 1403 Q96KR1;B5MEH6 ZFR Zinc finger RNA-binding protein yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 3 3 114.71 104.83 3;4 3.5608E-30 10 70030 20150910_Q1_SA_NiHu_Masterprac_group10_C 116.87 94.336 116150000 17962000 7045000 12278000 9162000 29575000 40129000 4113 1403 4065 18263;18264;18265;18266;18267;18268;18269;18270;18271;18272;18273;18274;18275 12127;12128;12129;12130;12131;12132;12133;12134;12135;12136 12134 10 KVPAAPITVSK Unmodified 1109.6808 0.6808447 1402 Q96KM6 ZNF512B Zinc finger protein 512B yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 85.322 77.743 2 0.018654 1 58634 20150910_Q1_SA_NiHu_Masterprac_group15_C 80.69 49.622 81854000 5183500 12617000 19477000 12906000 14944000 16727000 4114 1402 4066 18276;18277;18278;18279;18280;18281 12137 12137 1 KVPQVSTPTLVEVSR Unmodified 1638.9305 0.93047046 294;293 CON__P02769;P02768;CON__P02768-1;E7ESU5;H0YA55;D6RHD5;B7WNR0;P02768-2;C9JKR2;Q8IUK7 ALB Serum albumin no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 1 6 2 132.91 120.01 2;3 0 14 82304 20150910_Q1_SA_NiHu_Masterprac_group13_C 204.67 159.46 1502600000 291730000 321330000 119530000 162500000 53045000 554420000 + 4115 294;293 4067 18282;18283;18284;18285;18286;18287;18288;18289;18290;18291;18292;18293;18294;18295;18296;18297;18298 12138;12139;12140;12141;12142;12143;12144;12145;12146;12147;12148;12149;12150;12151 12140 13 KVPQVSTPTLVEVSRSLGK Unmodified 2024.163 0.16298959 294 CON__P02769 yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 1 1 133.24 122.9 3;4 0 9 88173 20150910_Q1_SA_NiHu_Masterprac_group15_B 183.71 161.08 877560000 68662000 48970000 538030000 146840000 27035000 48018000 + 4116 294 4068 18299;18300;18301;18302;18303;18304;18305;18306;18307 12152;12153;12154;12155;12156;12157;12158;12159;12160 12157 9 KVPVSVNLLSK Unmodified 1182.7336 0.73360855 753 O76021;I3L3C4 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 125.39 118.37 2 0.02458 2 81514 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.392 47.686 26430000 17494000 2015700 0 0 0 6920200 4117 753 4069 18308;18309;18310 12161;12162 12161 2 KVPWFDQQNGRTYLK Unmodified 1878.9741 0.97406661 1350 Q92522 H1FX Histone H1x yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 131.27 113.53 3 0.0015172 1 80382 20150910_Q1_SA_NiHu_Masterprac_group15_C 83.869 62.202 4016400 0 0 0 0 4016400 0 4118 1350 4070 18311 12163 12163 1 KVQDGLSDIAEK Unmodified 1301.6827 0.68269519 569 F8WDE0;P46100-6;P46100-2;P46100-5;P46100-3;P46100-4;P46100 ATRX Transcriptional regulator ATRX yes no 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 2 2 2 1 2 86.491 79.818 2;3 1.7438E-06 3 54924 20150910_Q1_SA_NiHu_Masterprac_group15_B 102.33 60.949 10496000 692020 2299200 2038800 1288200 1267200 2910100 4119 569 4071 18312;18313;18314;18315;18316;18317;18318;18319;18320;18321 12164;12165;12166 12166 3 KVQEFEHINGR Unmodified 1355.6946 0.69459728 430 Q12873;E9PG89;Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 62.877 56.559 3 0.031418 1 40046 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.976 22.769 2777600 0 947890 739480 0 0 1090200 4120 430 4072 18322;18323;18324 12167 12167 1 KVQEFEHVNGR Unmodified 1341.6789 0.67894722 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 50.442 45.06 3 0.0017862 1 32285 20150910_Q1_SA_NiHu_Masterprac_group10_B 82.494 55.741 6882700 0 1464900 3794200 0 0 1623700 4121 486 4073 18325;18326;18327 12168 12168 1 KVTFGLNRNMTAEFK Unmodified 1754.9138 0.91377454 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 130.95 130.64 3 0.014807 1 83742 20150910_Q1_SA_NiHu_Masterprac_group10_B 53.448 9.1357 27466000 0 9619100 0 17847000 0 0 4122 1111 4074 18328;18329 12169 12169 1 KVVDHYENPRNVGSLDK Unmodified 1969.0017 0.0017379196 70 F5H5N2;B4DNC9;B3KQ30;Q9H1K1 ISCU Iron-sulfur cluster assembly enzyme ISCU, mitochondrial yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 79.018 71.638 4 0.036526 1 49574 20150910_Q1_SA_NiHu_Masterprac_group13_B 35.473 17.769 5480900 0 319660 1288800 1059600 604840 2208000 4123 70 4075 18330;18331;18332;18333;18334 12170 12170 1 KVVQETGIKVR Unmodified 1255.7612 0.76122028 71 C9J0C6;G5E9X1;B3KQH5;Q9UL03-3;Q9UL03 INTS6 Integrator complex subunit 6 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 58.321 51.924 3 0.032991 1 42863 20150910_Q1_SA_NiHu_Masterprac_group13_C 64.224 46.151 4483200 0 801000 1018500 681720 721840 1260200 4124 71 4076 18335;18336;18337;18338;18339 12171 12171 1 KVVQPVMPTSLR Unmodified 1353.7802 0.78024117 42 A8MTM6;Q15398;Q15398-1;G3V4E5 DLGAP5 Disks large-associated protein 5 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 118.69 108.59 3 0.0010155 3 76707 20150910_Q1_SA_NiHu_Masterprac_group15_C 89.356 75.588 12021000 0 1292500 3046500 0 2476500 5205500 4125 42 4077 18340;18341;18342;18343 12172;12173;12174 12174 2 KVVVVEQNGSFQVKIPK Unmodified 1898.0989 0.098932769 1320 Q8NDX6 ZNF740 Zinc finger protein 740 yes yes 0 0 2 By MS/MS By matching By matching By MS/MS By matching By matching 1 2 130.85 130.85 3;4 7.3736E-05 4 83822 20150910_Q1_SA_NiHu_Masterprac_group13_B 87.647 76.329 25330000 0 0 0 25330000 0 0 4126 1320 4078 18344;18345;18346 12175;12176;12177;12178 12176 4 KVWLDPNETNEIANANSR Unmodified 2070.013 0.013030887 1016 P84098 RPL19 60S ribosomal protein L19 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 131.13 126.17 3 0.002306 1 85989 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.684 26.211 5197600 0 0 0 0 0 5197600 4127 1016 4079 18347 12179 12179 0 KVYASSGDGEVYVWDVNSRK Unmodified 2258.0968 0.096760517 1654 Q9Y5J1;B2RAX6 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 127.15 117 3 0.0067616 2 77624 20150910_Q1_SA_NiHu_Masterprac_group13_B 50.358 36.399 10080000 0 0 5487300 849810 1138500 2604700 4128 1654 4080 18348;18349;18350;18351 12180;12181 12180 2 KVYENYPTYDLTER Unmodified 1789.8523 0.85227972 901 P35659;P35659-2;B4DFG0;H0Y993 DEK Protein DEK yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 123.96 113.47 3 0.00057218 4 73667 20150910_Q1_SA_NiHu_Masterprac_group10_B 76.759 41.722 17491000 3242600 1374900 6045100 1004800 5823600 0 4129 901 4081 18352;18353;18354;18355;18356 12182;12183;12184;12185 12184 4 KVYENYPTYDLTERK Unmodified 1917.9472 0.94724273 901 P35659;P35659-2;B4DFG0;H0Y993 DEK Protein DEK yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 108.15 99.371 3 3.2374E-56 6 71385 20150910_Q1_SA_NiHu_Masterprac_group15_C 130.47 99.821 217410000 32713000 31780000 32565000 20717000 42302000 57333000 4130 901 4082 18357;18358;18359;18360;18361;18362 12186;12187;12188;12189;12190;12191 12189 6 KWDLSELPK Unmodified 1114.6023 0.60226003 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 132.13 123.25 2 1.5546E-29 2 84835 20150910_Q1_SA_NiHu_Masterprac_group13_B 136.49 95.408 34566000 0 0 0 22421000 12145000 0 4131 1361;629 4083 18363;18364 12192;12193 12192 2 KWDLSELPKFEK Unmodified 1518.8082 0.80823006 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 133.49 130.7 3 1.0791E-49 2 86339 20150910_Q1_SA_NiHu_Masterprac_group10_B 132.06 90.482 244170000 0 86158000 0 0 0 158010000 4132 1361;629 4084 18365;18366 12194;12195 12195 2 KWGVPIEK Unmodified 955.5491 0.54910224 825 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 2 1 101.65 91.988 2 7.5604E-15 2 67576 20150910_Q1_SA_NiHu_Masterprac_group15_C 125.16 54.905 13529000 3055400 1298100 0 0 6185000 2990500 4133 825 4085 18367;18368;18369;18370;18371 12196;12197 12196 1 KWNLDELPK Unmodified 1141.6132 0.61315906 853 P17844;E7ETL9 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 131.73 117.63 2 2.4447E-154 4 82425 20150910_Q1_SA_NiHu_Masterprac_group10_B 169.76 81.704 83871000 22291000 0 14452000 0 7699200 39428000 4134 853 4086 18372;18373;18374;18375;18376 12198;12199;12200;12201 12200 4 KWNLDELPKFEK Unmodified 1545.8191 0.81912909 853 P17844;E7ETL9 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 133.05 126.04 3 0 5 88294 20150910_Q1_SA_NiHu_Masterprac_group15_B 208.08 160.37 370710000 0 54422000 40302000 74181000 21370000 180440000 4135 853 4087 18377;18378;18379;18380;18381;18382 12202;12203;12204;12205;12206 12204 5 KYADLLEESR Unmodified 1222.6194 0.61936665 1546 Q9NUQ3 TXLNG Gamma-taxilin yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 103.26 94.944 3 0.0049912 3 63588 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.387 52.701 8988300 1127800 1745500 963060 1002300 1784000 2365700 4136 1546 4088 18383;18384;18385;18386;18387;18388 12207;12208;12209 12209 3 KYADLLEESRSVQK Unmodified 1664.8733 0.87334951 1546 Q9NUQ3 TXLNG Gamma-taxilin yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 109.24 99.319 3 0.0064671 1 66425 20150910_Q1_SA_NiHu_Masterprac_group10_C 65.495 37.144 9360700 2621800 540240 2763500 2242500 1192600 0 4137 1546 4089 18389;18390;18391;18392;18393 12210 12210 1 KYAELLEEHRNSQK Unmodified 1743.8904 0.89039656 907 P40222 TXLNA Alpha-taxilin yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 2 2 2 2 69.564 62.011 3;4 0.0022812 5 43342 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.292 41.871 18367000 0 950580 3506100 4353000 4683300 4873900 4138 907 4090 18394;18395;18396;18397;18398;18399;18400;18401;18402 12211;12212;12213;12214;12215 12214 5 KYEDICPSTHNMDVPNIK Unmodified 2159.998 0.99797445 228 F8WCJ1;C9J7B5;C9J4W5;I3L397;Q9GZV4;P63241;P63241-2;I3L504;Q6IS14 EIF5A2;EIF5A;EIF5AL1 Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 123.41 118.65 3 3.3105E-14 1 80632 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.281 83.487 4901200 0 0 0 0 0 4901200 4139 228 4091 18403 12216 12216 1 KYFLHDDRDDGVDYWAK Unmodified 2141.9807 0.98066813 1563 Q9NYF8-2;Q9NYF8;Q9NYF8-4;H0YF14 BCLAF1 Bcl-2-associated transcription factor 1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 130.62 117.05 4 0.0032756 2 81723 20150910_Q1_SA_NiHu_Masterprac_group13_C 50.04 35.004 45181000 0 0 13180000 0 1912600 30088000 4140 1563 4092 18404;18405;18406 12217;12218 12217 2 KYGGLKMPTQSEEEK Unmodified 1723.8451 0.84508585 331 E7EQY4;Q9BTC8-2;D6W5A2;F8W8M8;E7EV10;Q9BTC8 MTA3 Metastasis-associated protein MTA3 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 78.898 74.719 3 0.031813 1 51855 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.196 24.485 6741900 195350 1763700 0 0 0 4782900 4141 331 4093 18407;18408;18409 12219 12219 0 KYGGLKTPTQLEGATR Unmodified 1718.9315 0.93153309 754 O94776;Q68DB1 MTA2;DKFZp686F2281 Metastasis-associated protein MTA2 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 91.467 89.485 4 0.009971 1 61393 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.734 24.077 3072900 0 938100 0 0 0 2134800 4142 754 4094 18410;18411 12220 12220 1 KYGGSVGSQPPPVAPEPGPVPSSPSQEPPTK Unmodified 3054.5298 0.52982995 154 E9PS08;B4E0P8;E9PJ81;E9PRQ7;Q04323;Q04323-2 UBXN1 UBX domain-containing protein 1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 129.82 111.82 3 0.0013863 1 80452 20150910_Q1_SA_NiHu_Masterprac_group13_C 33.153 21.957 3202300 0 0 3202300 0 0 0 4143 154 4095 18412 12221 12221 1 KYNPDSGLEVLAVQR Unmodified 1687.8893 0.88933392 1496 Q9H6R0;Q9H6R0-2;I3L1L6 DHX33 Putative ATP-dependent RNA helicase DHX33 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 132.27 124.12 3 6.6313E-21 2 84510 20150910_Q1_SA_NiHu_Masterprac_group10_B 108.23 80.97 19470000 14100000 5369500 0 0 0 0 4144 1496 4096 18413;18414 12222;12223 12222 1 KYNPDSGLEVLAVQRVSK Unmodified 2002.0847 0.084739267 1496 Q9H6R0;Q9H6R0-2;I3L1L6 DHX33 Putative ATP-dependent RNA helicase DHX33 yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 131.6 126.28 3 0 4 86574 20150910_Q1_SA_NiHu_Masterprac_group15_B 202.84 156.16 148950000 17999000 71325000 0 25395000 0 34226000 4145 1496 4097 18415;18416;18417;18418 12224;12225;12226;12227 12225 4 KYNPTWHCIVGR Unmodified 1529.7562 0.75615168 1004 P63167;Q96FJ2 DYNLL1;DYNLL2 Dynein light chain 1, cytoplasmic;Dynein light chain 2, cytoplasmic yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 104.7 97.781 3 0.00092472 5 66617 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.74 77.74 17839000 0 3516700 1256800 1396100 2910400 8759400 4146 1004 4098 18419;18420;18421;18422;18423;18424 12228;12229;12230;12231;12232 12230 5 KYPCPECGSFFR Unmodified 1546.6697 0.66970444 1517 Q9HBE1-3;Q9HBE1 PATZ1 POZ-, AT hook-, and zinc finger-containing protein 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 130.25 112.5 3 0.0020634 1 79421 20150910_Q1_SA_NiHu_Masterprac_group15_C 66.538 34.379 3661500 0 0 0 0 3661500 0 4147 1517 4099 18425 12233 12233 1 KYQEQLVQEQELAK Unmodified 1732.8996 0.89956426 917 P42695;E9PQA3 NCAPD3 Condensin-2 complex subunit D3 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 103.42 95.132 3 0.0123 2 64971 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.69 27.7 6844400 540420 1707200 1103600 0 0 3493200 4148 917 4100 18426;18427;18428;18429 12234;12235 12234 2 LAAAILGGVDQIHIKPGAK Unmodified 1871.0993 0.09926712 862 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 2 2 2 133.14 125.93 3;4 1.3376E-100 9 88376 20150910_Q1_SA_NiHu_Masterprac_group15_B 135.47 101.2 642270000 0 81777000 97811000 142370000 64438000 255870000 4149 862 4101 18430;18431;18432;18433;18434;18435;18436;18437;18438 12236;12237;12238;12239;12240;12241;12242;12243;12244 12238 8 LAAAISEVVSQTPASTTQAGAPPRDTSQSDKDLDDALDK Unmodified 3968.9451 0.94507707 375 G5E9D3;P20810-5;E7ESM9;P20810-7;P20810-6;B7Z468;H0Y7F0;P20810-3;E9PDE4;E7ES10;P20810-4;E9PCH5;G5E946;B7Z574;P20810-2;P20810;E7EQ12;E7EQA0 CAST Calpastatin yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 133.02 115.02 4 0.0019786 1 83973 20150910_Q1_SA_NiHu_Masterprac_group13_C 22.768 12.455 51073000 0 0 51073000 0 0 0 4150 375 4102 18439 12245 12245 1 LAACEPLK Unmodified 900.47389 0.47388839 1199 Q5TGY3 AHDC1 AT-hook DNA-binding motif-containing protein 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 72.697 68.552 2 0.039944 1 47497 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.224 31.064 5779600 502290 1372400 0 0 0 3904900 4151 1199 4103 18440;18441;18442 12246 12246 1 LAADDFR Unmodified 806.39227 0.39226725 298;286;304;297;485;834;281;549 P13645;CON__P13645;CON__P02535-1;CON__P08730-1;CON__A2A4G1;Q7Z3Y7;CON__Q148H6;CON__Q7Z3Y7;C9JM50;P08727;CON__P08727;CON__P19001;CON__P05784;P19012;CON__P19012;CON__Q9Z2K1;CON__Q3ZAW8;O76013-2;CON__Q92764;C4AM86;Q14532;CON__Q14532;O76014;CON__A2AB72;Q92764;O76015;CON__O76015;O76013;CON__O76013;CON__O76014;Q2M2I5;CON__Q2M2I5;P02533;CON__P02533;CON__Q6IFX2;Q04695;CON__Q04695;CON__Q9QWL7;Q15323;CON__Q9UE12;CON__Q15323;CON__A2A5Y0;Q14525;CON__Q14525;CON__Q497I4;CON__REFSEQ:XP_986630;P08779;CON__P08779;F5GWP8;P13646;P13646-2;C9JA77;P13646-3;CON__ENSEMBL:ENSP00000377550;F8VZY9;P05783 KRT10;KRT28;KRT19;KRT15;KRT36;KRT35;KRT32;KRT37;KRT38;KRT24;KRT14;KRT17;KRT31;KRT33B;KRT16;JUP;KRT13;KRT18 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 19;Keratin, type I cytoskeletal 15;Keratin, type I cuticular Ha6;Keratin, type I cuticular Ha2;Keratin, type I cuticular Ha7;Keratin, type I cuticular Ha5;Keratin, type I cuticular Ha8;Keratin, type I cytoskeletal 24;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cuticular Ha1;Keratin, type I cuticular Ha3-II;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 13;Keratin, type I cytoskeletal 18 no no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 79.863 74.132 2 0.00095246 1 51522 20150910_Q1_SA_NiHu_Masterprac_group10_B 114.72 46.323 9288600 693830 3893100 0 1596700 1093500 2011500 + 4152 298;286;304;281;297;485;834;549 4104 18443;18444;18445;18446;18447 12247 12247 1 LAAGSAIMK Unmodified 860.47897 0.47897377 1159 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 81.606 74.061 2 0.015314 2 51309 20150910_Q1_SA_NiHu_Masterprac_group13_B 76.1 27.003 20100000 1740100 1743500 3527200 2068100 5364300 5656800 4153 1159 4105 18448;18449;18450;18451;18452;18453 12248;12249 12248 2 LAALKRPDDVPLSLSPSK Unmodified 1906.0888 0.088762013 1587 Q9UFC0 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 131.56 122.06 3 1.9241E-209 7 86490 20150910_Q1_SA_NiHu_Masterprac_group15_B 162.59 145.59 158010000 32138000 19525000 8584100 5447900 2275100 90043000 4154 1587 4106 18454;18455;18456;18457;18458;18459 12250;12251;12252;12253;12254;12255;12256 12253 7 LAANDFFRHQLSK Unmodified 1545.8052 0.80521036 443 E9PQ36;E9PI74;E9PS95;E9PJH7;Q9H936 SLC25A22 Mitochondrial glutamate carrier 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.31 125.35 3 0.00022056 1 85068 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.402 56.609 5859600 0 0 0 0 0 5859600 4155 443 4107 18460 12257 12257 1 LAANSDHLMQIQK Unmodified 1467.7504 0.7503976 110 B4DNK1;Q9NVM9;F8VRX9;F5H457 ASUN Protein asunder homolog yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 98.585 92.218 3 1.5426E-15 5 63086 20150910_Q1_SA_NiHu_Masterprac_group15_B 109.72 62.659 6971400 572990 1061900 1601900 730790 0 3003900 4156 110 4108 18461;18462;18463;18464;18465 12258;12259;12260;12261;12262 12260 5 LAANTLSTPSGSSLQRPK Unmodified 1826.985 0.98502522 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 107.9 96.522 3 0.011024 1 64786 20150910_Q1_SA_NiHu_Masterprac_group10_C 79.393 56.167 0 0 0 0 0 0 0 4157 1325 4109 18466 12263 12263 1 LAAPSVSHVSPR Unmodified 1219.6673 0.6673199 176 C9IZM8;B5MEB7;Q8WXE1-3;Q8WXE1-2;Q8WXE1 ATRIP ATR-interacting protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 80.537 79.082 3 0.025944 1 54494 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.301 30.527 0 0 0 0 0 0 0 4158 176 4110 18467 12264 12264 1 LAARPYSATAAAATGGMANVK Unmodified 1991.0258 0.02584418 475 F2Z2T2;P23025 XPA DNA repair protein complementing XP-A cells yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 118.39 109.01 3 8.7101E-23 2 76837 20150910_Q1_SA_NiHu_Masterprac_group15_C 98.292 78.628 13048000 2861700 1383700 1227000 780840 3184300 3610200 4159 475 4111 18468;18469;18470;18471;18472;18473 12265;12266 12265 2 LAASASTQQLQEVK Unmodified 1472.7835 0.78347187 767 O95235;B4DL79 KIF20A Kinesin-like protein KIF20A yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 2 1 100.43 90.925 2 1.1148E-21 2 66602 20150910_Q1_SA_NiHu_Masterprac_group15_C 103.11 67.586 3725000 0 0 0 0 1054700 2670300 4160 767 4112 18474;18475;18476 12267;12268 12268 1 LAASASTQQLQEVKAK Unmodified 1671.9155 0.91554867 767 O95235;B4DL79 KIF20A Kinesin-like protein KIF20A yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 92.133 83.281 3 1.082E-26 5 57480 20150910_Q1_SA_NiHu_Masterprac_group10_C 109.1 69.142 11641000 2233800 0 2252500 2243500 2455000 2456400 4161 767 4113 18477;18478;18479;18480;18481 12269;12270;12271;12272;12273 12273 5 LAASEDHCSPSEETPSQSK Unmodified 2058.88 0.88002738 496 F5H5E7;Q5FWF4-2;G8JLA0;Q5FWF4-3;F5GYN7;Q5FWF4 ZRANB3 DNA annealing helicase and endonuclease ZRANB3;DNA annealing helicase ZRANB3;Endonuclease ZRANB3 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 56.995 50.698 3 0.00099838 4 41878 20150910_Q1_SA_NiHu_Masterprac_group13_C 58.864 58.864 3489900 0 652450 555390 411560 819010 1051500 4162 496 4114 18482;18483;18484;18485;18486 12274;12275;12276;12277 12275 4 LAAVVSACK Unmodified 917.50044 0.50043749 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 71.727 62.853 2 0.011764 3 44158 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.645 47.821 38269000 0 4229000 4118100 0 10123000 19799000 4163 1012 4115 18487;18488;18489;18490 12278;12279;12280 12279 3 LACDVDQVTR Unmodified 1175.5605 0.56047157 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 74 72.745 2 0.0042247 1 50480 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.134 50.626 1221400 0 0 0 0 0 1221400 4164 1012 4116 18491 12281 12281 1 LACPVCSK Unmodified 933.44121 0.44120805 1634 Q9Y2M0-2;Q9Y2M0;H3BQ24 FAN1 Fanconi-associated nuclease 1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 59.594 46.812 2 0.0084936 2 38574 20150910_Q1_SA_NiHu_Masterprac_group13_C 99.442 61.281 1863600 0 0 1863600 0 0 0 4165 1634 4117 18492 12282;12283 12283 2 LADALQELR Unmodified 1027.5662 0.56620887 783 P02545;P02545-3;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q3BDU5;Q5TCJ4;Q5TCI8;H0YAB0 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 2 1 124.25 119.54 2 1.4769E-06 3 82692 20150910_Q1_SA_NiHu_Masterprac_group13_C 114.86 44.042 47847000 0 4786900 8177600 3355500 0 31527000 4166 783 4118 18493;18494;18495;18496;18497 12284;12285;12286 12284 3 LADALQELRAQHEDQVEQYK Unmodified 2383.1768 0.17680175 783 P02545;P02545-3;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q3BDU5;Q5TCJ4;Q5TCI8;H0YAB0 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 2 1 2 131.14 125.28 3;4 3.8532E-47 6 82262 20150910_Q1_SA_NiHu_Masterprac_group13_C 110.77 82.157 166740000 0 41156000 27624000 19106000 1971600 76885000 4167 783 4119 18498;18499;18500;18501;18502;18503;18504;18505 12287;12288;12289;12290;12291;12292 12287 4 LADALQELRAQHEDQVEQYKK Unmodified 2511.2718 0.27176477 783 P02545;P02545-3;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q3BDU5;Q5TCJ4;Q5TCI8;H0YAB0 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 130.73 115.05 4 0.02455 1 76359 20150910_Q1_SA_NiHu_Masterprac_group10_C 34.388 18.663 6125400 6125400 0 0 0 0 0 4168 783 4120 18506 12293 12293 1 LADDLSTLQEK Unmodified 1231.6296 0.62959699 1121 Q14980-2;Q14980 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 111.2 103.92 2 7.1951E-08 5 70666 20150910_Q1_SA_NiHu_Masterprac_group15_B 109.39 60.787 33649000 6599600 9371000 0 541120 2296200 14841000 4169 1121 4121 18507;18508;18509;18510;18511 12294;12295;12296;12297;12298 12294 5 LADFGLAR Unmodified 861.47085 0.47085192 589;799;949;1020;525 P06493;E5RIU6;Q00526;F8VXD2;B3KX76;F8VYH9;B4DNF9;F8VZZ0;F8VTV8;F8VWX7;F8VZ51;H0YAZ9;P11802;Q00534;E7EUK8;Q96Q40-2;Q96Q40-4;E5RGN0;Q96Q40-3;O94921-3;F8W6H8;Q96Q40;F5H203;O94921-2;O94921;Q07002;Q07002-2;Q00536;Q07002-3;B7Z8T0;Q9NYV4-3;Q14004-2;Q9NYV4-2;Q9NYV4;Q14004;P50750;P50750-2;P24941-2;P24941;G3V5T9;E7ESI2;Q00535-2;Q00535;F5H6Z0;Q00537-2;Q00537 CDK1;CDK3;CDK4;CDK16;CDK6;CDK14;CDK15;CDK18;CDK12;CDK13;CDK9;CDK2;CDK5;CDK17 Cyclin-dependent kinase 1;Cyclin-dependent kinase 3;Cyclin-dependent kinase 4;Cyclin-dependent kinase 6;Cyclin-dependent kinase 15;Cyclin-dependent kinase 14;Cyclin-dependent kinase 18;Cyclin-dependent kinase 16;Cyclin-dependent kinase 12;Cyclin-dependent kinase 13;Cyclin-dependent kinase 9;Cyclin-dependent kinase 2;Cyclin-dependent kinase 5;Cyclin-dependent kinase 17 no no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 122.49 114.22 2 0.0074874 2 81514 20150910_Q1_SA_NiHu_Masterprac_group13_C 94.114 27.08 19202000 0 3060300 4030400 922640 1621400 9566900 4170 799;949;589;1020;525 4122 18512;18513;18514;18515;18516 12299;12300 12299 2 LADMHSTEISLQQR Unmodified 1627.7988 0.79880436 100 E9PF10;O75694-2;B4DLT2;O75694 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 2 1 1 2 113.11 104.62 2;3 2.9288E-55 3 71518 20150910_Q1_SA_NiHu_Masterprac_group15_B 127.78 108.02 31651000 374140 2622900 1565400 0 1637000 25452000 4171 100 4123 18517;18518;18519;18520;18521;18522;18523 12301;12302;12303 12301 2 LADPAVTDFPAGK Unmodified 1300.6663 0.66631685 184 B7Z367;Q9UL40;D6RJ07;Q9UL40-2;B7Z4J8 ZNF346 Zinc finger protein 346 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 129.24 117.13 2 0.0011454 4 80425 20150910_Q1_SA_NiHu_Masterprac_group15_C 90.412 58.083 5119700 0 909480 3437900 0 772320 0 4172 184 4124 18524;18525;18526;18527 12304;12305;12306;12307 12306 4 LADSGDGAGPSPEEK Unmodified 1428.6369 0.63686721 1364 Q92917 GPKOW G patch domain and KOW motifs-containing protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 54.818 47.469 2 1.7076E-13 4 33718 20150910_Q1_SA_NiHu_Masterprac_group15_B 103.79 86.197 4235100 531060 683680 813180 0 914280 1292900 4173 1364 4125 18528;18529;18530;18531;18532 12308;12309;12310;12311 12309 3 LAEALYIADR Unmodified 1133.6081 0.60807369 583 Q13573;G3V3A4;G3V4X8 SNW1 SNW domain-containing protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 128.9 128.29 2 0.033929 1 82000 20150910_Q1_SA_NiHu_Masterprac_group10_B 89.561 53.243 0 0 0 0 0 0 0 4174 583 4126 18533 12312 12312 1 LAEALYIADRK Unmodified 1261.703 0.7030367 583 Q13573;G3V3A4;G3V4X8 SNW1 SNW domain-containing protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 3 2 113.52 104.5 2;3 0.00010661 7 68996 20150910_Q1_SA_NiHu_Masterprac_group10_B 107.34 45.178 28956000 3391400 3652600 4018900 1502900 2439000 13951000 4175 583 4127 18534;18535;18536;18537;18538;18539;18540;18541;18542;18543;18544;18545;18546 12313;12314;12315;12316;12317;12318;12319 12318 7 LAEALYIADRKAR Unmodified 1488.8413 0.84126152 583 Q13573;G3V3A4;G3V4X8 SNW1 SNW domain-containing protein 1 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 103.31 94.996 3 0.0043629 4 64842 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.739 46.189 24514000 3296400 4319400 4261600 2851100 2569800 7215300 4176 583 4128 18547;18548;18549;18550;18551;18552 12320;12321;12322;12323 12321 4 LAEAPSAQPNQTQEK Unmodified 1610.79 0.79001381 1150 Q15911-2;Q15911 ZFHX3 Zinc finger homeobox protein 3 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 61.359 54.761 2 0.00066871 6 44860 20150910_Q1_SA_NiHu_Masterprac_group13_C 74.649 53.866 9210100 0 1799300 3094800 1080600 1023000 2212400 4177 1150 4129 18553;18554;18555;18556;18557 12324;12325;12326;12327;12328;12329 12325 6 LAEEEDLFDSAHPEEGDLDLASESTAHAQSSK Unmodified 3427.5175 0.51754652 1097;1137 Q14151;A8MXT5;C9JPX0;Q15424;F5H1L1;F5H0H3;F5GZU3;B7Z2F6 SAFB2;SAFB Scaffold attachment factor B2;Scaffold attachment factor B1 no no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 133 126.85 4 5.7786E-41 4 81994 20150910_Q1_SA_NiHu_Masterprac_group15_C 88.481 79.854 160190000 0 30152000 0 107890000 22147000 0 4178 1097;1137 4130 18558;18559;18560 12330;12331;12332;12333 12331 4 LAEIGAPIQGNREELVER Unmodified 1993.0593 0.059252799 1083 Q13435;E9PPJ0;E9PJ04;H0YCG1;E9PJT3 SF3B2 Splicing factor 3B subunit 2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 130.89 128.11 3 0.0016405 2 83392 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.079 36.177 22171000 0 14691000 0 0 0 7480000 4179 1083 4131 18561;18562 12334;12335 12335 2 LAELLTQQHGLQCR Unmodified 1665.8621 0.86207332 1497 Q9H6R4-4;Q9H6R4;Q9H6R4-2;G8JLK7;F5H6M7 NOL6 Nucleolar protein 6 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 2 1 1 1 2 122.38 113.69 2;3 3.8274E-86 6 77991 20150910_Q1_SA_NiHu_Masterprac_group15_B 140.31 102.78 75910000 15611000 6075100 6096400 2235200 2842800 43050000 4180 1497 4132 18563;18564;18565;18566;18567;18568;18569;18570;18571 12336;12337;12338;12339;12340;12341 12338 6 LAEPSQLLK Unmodified 997.5808 0.5807963 485 F5GWP8;C9JTX4;C9J826;C9JK18;C9JKY1;P14923 JUP Junction plakoglobin yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 119.45 114.78 2 0.010415 2 78228 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.615 41.173 1517000 0 0 0 0 0 1517000 4181 485 4133 18572 12342;12343 12342 2 LAEPYGKIK Unmodified 1017.5859 0.58588168 52 P43243;A8MXP9;D6REM6;H0Y8T4;B3KM87;P43243-2 MATR3 Matrin-3 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 74.677 67.249 2 0.037209 1 52416 20150910_Q1_SA_NiHu_Masterprac_group15_C 78.113 37.389 6925400 387020 1000600 587720 326200 2136700 2487200 4182 52 4134 18573;18574;18575;18576;18577;18578 12344 12344 1 LAEQAERYDDMATCMK Unmodified 1930.8223 0.82231827 883 P27348;E9PG15 YWHAQ 14-3-3 protein theta yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 118.34 105.41 3 0.0032743 2 72301 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.946 34.253 4338400 0 0 888690 0 1016000 2433700 4183 883 4135 18579;18580;18581 12345;12346 12346 2 LAESKPNENRLVETK Unmodified 1726.9214 0.92136233 1222 Q6KC79-2;Q6KC79;Q6KC79-3 NIPBL Nipped-B-like protein yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 65.161 58.084 3;4 0.0016865 5 47527 20150910_Q1_SA_NiHu_Masterprac_group13_C 83.243 62.437 26675000 2081700 4492500 4560100 2531100 6399800 6609300 4184 1222 4136 18582;18583;18584;18585;18586;18587;18588;18589;18590;18591;18592;18593 12347;12348;12349;12350;12351 12348 5 LAEVQDSSMPVPAQPK Unmodified 1695.8502 0.85017123 445 E9PL60;E9PII7;H0YDK3;H0YDE3;H0YDU2;E9PRI1;Q96NY9 MUS81 Crossover junction endonuclease MUS81 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 124.65 113.29 2 6.9345E-12 4 80540 20150910_Q1_SA_NiHu_Masterprac_group13_C 99.796 50.463 8333600 1637100 731880 2622400 0 1363200 1979000 4185 445 4137 18594;18595;18596;18597;18598 12352;12353;12354;12355 12352 4 LAEVQREAQSTAR Unmodified 1457.7587 0.7586541 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;H0YH75 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 57.855 49.95 3 0.004256 1 35808 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.528 33.313 4066500 661740 1867400 0 0 1537400 0 4186 1121 4138 18599;18600;18601 12356 12356 1 LAGCTVFITGASR Unmodified 1351.6918 0.69182009 1239 Q6YN16-2;Q6YN16 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 130.89 123.09 2 0.001367 5 85961 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.46 63.101 28889000 7727700 3421700 0 1082900 2964500 13693000 4187 1239 4139 18602;18603;18604;18605;18606 12357;12358;12359;12360;12361 12358 2 LAGEELAGEEAPQEK Unmodified 1569.7522 0.75223132 1252 Q7Z4V5-2;Q7Z4V5;I3L080 HDGFRP2 Hepatoma-derived growth factor-related protein 2 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 100.04 90.343 2 0.0026954 2 67756 20150910_Q1_SA_NiHu_Masterprac_group13_C 64.04 45.944 5994600 656040 1398900 446790 0 914120 2578800 4188 1252 4140 18607;18608;18609;18610;18611 12362;12363 12362 2 LAGFELRK Unmodified 932.54435 0.54435122 1314 Q8NB16 MLKL Mixed lineage kinase domain-like protein yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 99.914 92.193 2 0.037099 1 62027 20150910_Q1_SA_NiHu_Masterprac_group10_B 94.114 38.438 11898000 0 1749800 1772900 626860 2143700 5605000 4189 1314 4141 18612;18613;18614;18615;18616 12364 12364 1 LAIEAER Unmodified 800.43922 0.43921744 1277 Q8IVM0;Q8IVM0-2 CCDC50 Coiled-coil domain-containing protein 50 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 67.085 65.003 2 0.031992 1 45542 20150910_Q1_SA_NiHu_Masterprac_group10_B 85.359 10.944 1807600 0 436750 0 0 0 1370900 4190 1277 4142 18617;18618 12365 12365 1 LAIHNPNLPTTLPVNSQNIQPVRYNRR Unmodified 3124.7006 0.70063272 9 A2TJX0;B4DL96;Q13887 KLF5 Krueppel-like factor 5 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 132.44 127.47 4 1.1298E-09 1 87405 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.674 49.069 31750000 0 0 0 0 0 31750000 4191 9 4143 18619 12366 12366 1 LALAGIGQPVK Unmodified 1065.6546 0.65462995 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 131.97 124.12 2 2.5147E-20 6 84200 20150910_Q1_SA_NiHu_Masterprac_group13_B 122.96 77.982 120920000 24628000 17120000 13631000 6905100 0 58632000 4192 1611 4144 18620;18621;18622;18623;18624 12367;12368;12369;12370;12371;12372 12368 6 LALAGIGQPVKK Unmodified 1193.7496 0.74959297 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 114.36 105.24 2 2.7425E-26 6 74712 20150910_Q1_SA_NiHu_Masterprac_group15_C 123.51 72.237 114350000 15593000 16365000 27674000 12922000 11585000 30211000 4193 1611 4145 18625;18626;18627;18628;18629;18630 12373;12374;12375;12376;12377;12378 12376 5 LALGQINIAK Unmodified 1039.639 0.63897988 1471 Q9BZE4;B7Z7A3;Q5T3R7 GTPBP4 Nucleolar GTP-binding protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 133.4 128.44 2 5.9446E-115 1 88489 20150910_Q1_SA_NiHu_Masterprac_group15_B 159.28 101.05 0 0 0 0 0 0 0 4194 1471 4146 18631 12379 12379 1 LALKLHPDKNPNNPNAHGDFLK Unmodified 2452.2975 0.29752601 1287 Q8IXB1;Q8IXB1-2;F8W884;Q3B7W8;E7EP04;Q71S60 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 113.82 106.47 4 0.0019256 1 71077 20150910_Q1_SA_NiHu_Masterprac_group10_C 50.098 43.154 4040500 1804400 0 0 2236100 0 0 4195 1287 4147 18632;18633 12380 12380 1 LALSQNQQSSGAAGPTGK Unmodified 1713.8646 0.86457574 766 O95232;B4DJ96;F5H1W9;D6RDI2 LUC7L3 Luc7-like protein 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 77.196 70.077 2 0.0079047 1 48481 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.946 32.155 2805600 142190 281800 0 0 711910 1669700 4196 766 4148 18634;18635;18636;18637 12381 12381 1 LALSQNQQSSGAAGPTGKNEEK Unmodified 2214.0877 0.087652394 766 O95232;B4DJ96;F5H1W9;D6RDI2 LUC7L3 Luc7-like protein 3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 68.457 61.888 3 0.0089511 1 43291 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.645 40.645 4189400 0 1066200 0 0 1429900 1693300 4197 766 4149 18638;18639;18640 12382 12382 1 LALSVGTDK Unmodified 902.5073 0.50729701 1555 Q9NWT1 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 97.043 89.097 2 0.0065883 2 61033 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.265 29.158 11379000 1319300 2039200 1864600 2124200 1605000 2426500 4198 1555 4150 18641;18642;18643;18644;18645;18646 12383;12384 12384 2 LANLINAEERR Unmodified 1297.7102 0.71024735 959 P52701;B4DF41;F5H2F9;F5H769;P52701-2 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 93.93 89.919 3 0.0065344 2 61729 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.78 19.062 4113800 205820 0 0 394530 0 3513400 4199 959 4151 18647;18648;18649 12385;12386 12386 2 LANLPEEVIQK Unmodified 1252.7027 0.70270235 959 P52701;B4DF41;F5H2F9;F5H3S1 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 132.03 122.53 2 1.3637E-29 5 84302 20150910_Q1_SA_NiHu_Masterprac_group13_B 126.03 96.003 97403000 16380000 24602000 14108000 3661600 7471000 31180000 4200 959 4152 18650;18651;18652;18653;18654;18655 12387;12388;12389;12390;12391 12387 5 LANNPDIVK Unmodified 982.54475 0.54474515 1624 Q9UQ84-4;Q9UQ84 EXO1 Exonuclease 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 68.383 67.228 2 0.018196 1 46842 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.816 3.3225 672620 0 0 0 0 0 672620 4201 1624 4153 18656 12392 12392 1 LANRAPEPTPQQVAQQQ Unmodified 1874.9599 0.9598731 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 2 1 2 2 94.413 85.25 2;3 0.0025584 5 64609 20150910_Q1_SA_NiHu_Masterprac_group13_C 67.846 67.846 71254000 3072600 9661700 8014100 817130 4888300 44800000 4202 486 4154 18657;18658;18659;18660;18661;18662;18663;18664;18665 12393;12394;12395;12396;12397 12393 3 LANTAPAW Unmodified 842.42865 0.42865276 592 Q12824-2;Q12824;G5E975;B5MCL5 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 119.77 115.1 1 0.031324 1 78746 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.611 28.979 1266900 0 0 0 0 0 1266900 4203 592 4155 18666 12398 12398 1 LANTCFNEIEK Unmodified 1337.6286 0.62855113 276 H0Y6A0;C9JZR4;E9PB03;Q9NP61 ARFGAP3 ADP-ribosylation factor GTPase-activating protein 3 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 112.47 103.43 2 0.0064311 5 70572 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.089 32.909 15142000 2598800 2754900 2133100 2007500 1815800 3832500 4204 276 4156 18667;18668;18669;18670;18671;18672 12399;12400;12401;12402;12403 12401 5 LAPAQYIRYTPSQQGVAFNSGAK Unmodified 2466.2656 0.26555718 583 Q13573;G3V3A4;G3V4X8;E9PGQ7 SNW1 SNW domain-containing protein 1 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 132.73 121.45 3 1.4258E-29 4 78953 20150910_Q1_SA_NiHu_Masterprac_group10_C 95.591 70.878 88955000 18201000 0 21054000 12794000 5553900 31352000 4205 583 4157 18673;18674;18675;18676;18677 12404;12405;12406;12407 12407 3 LAPDYDALDVANK Unmodified 1403.6933 0.69325988 45 P62750;H7BY10;A8MXA8;A8MUS3 RPL23A 60S ribosomal protein L23a yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.05 130.45 2 0.00057624 1 83819 20150910_Q1_SA_NiHu_Masterprac_group10_B 92.856 56.857 5037100 0 5037100 0 0 0 0 4206 45 4158 18678 12408 12408 1 LAPQVHNTTSRELNVSK Unmodified 1893.0068 0.0068232975 464 Q03164-2;Q03164;E9PQG7 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 2 2 2 2 2 1 80.031 71.933 3;4 0.0041557 2 49812 20150910_Q1_SA_NiHu_Masterprac_group13_B 49.188 34.623 17043000 3737700 3211600 3368000 2705400 2618100 1402300 4207 464 4159 18679;18680;18681;18682;18683;18684;18685;18686;18687;18688;18689 12409;12410 12410 2 LAPVPSPEPQKPAPVSPESVK Unmodified 2153.1732 0.17321992 1399 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 124.79 113.45 3 0.0014606 3 80333 20150910_Q1_SA_NiHu_Masterprac_group13_C 51.786 46.785 16371000 5623300 2056000 4886400 0 1336700 2468800 4208 1399 4160 18690;18691;18692;18693;18694 12411;12412;12413 12411 3 LAQAEAAGLHK Unmodified 1107.6037 0.60365701 1035 Q02880-2;Q02880;E9PCY5 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 55.389 49.147 2 7.0951E-06 4 40218 20150910_Q1_SA_NiHu_Masterprac_group13_C 106.16 51.618 11996000 486280 1587800 2404700 703560 1395700 5418200 4209 1035 4161 18695;18696;18697;18698;18699;18700 12414;12415;12416;12417 12415 4 LAQATQERTDLYAK Unmodified 1606.8315 0.83148469 1625 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 77.901 70.389 3 0.0012784 1 48851 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.438 48.663 10731000 376230 1913900 1423400 1208000 2441600 3367800 4210 1625 4162 18701;18702;18703;18704;18705;18706 12418 12418 1 LAQHVKPEEHEQVK Unmodified 1670.874 0.87401821 512 F5H2B9;H0YNH8;G3XAG2;Q9BZF9 UACA Uveal autoantigen with coiled-coil domains and ankyrin repeats yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 36.701 33.258 4 0.0028812 2 22909 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.298 45.636 2669900 0 0 1075200 669080 0 925610 4211 512 4163 18707;18708;18709 12419;12420 12420 2 LAQKNPMYQKER Unmodified 1504.782 0.78203208 865 P23246;P23246-2;H0Y9K7 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 45.119 39.796 3 0.0056544 4 28703 20150910_Q1_SA_NiHu_Masterprac_group10_C 80.871 63.299 9130200 1186200 1215900 2446800 1082000 1632500 1566700 4212 865 4164 18710;18711;18712;18713;18714;18715 12421;12422;12423;12424 12424 4 LAQLIATCPPSK Unmodified 1297.7064 0.70640752 1535 Q9NR48-2;Q9NR48 ASH1L Histone-lysine N-methyltransferase ASH1L yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 2 1 1 2 116.44 108.83 2 0.0017963 3 71579 20150910_Q1_SA_NiHu_Masterprac_group10_B 78.964 63.043 4667100 0 1136600 673730 0 534420 2322300 4213 1535 4165 18716;18717;18718;18719;18720;18721 12425;12426;12427 12427 3 LAQQIKQEVR Unmodified 1211.6986 0.69862003 215 B9A062;B8ZZU9;P13995 MTHFD2 Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 71.204 56.465 3 0.0054033 1 45444 20150910_Q1_SA_NiHu_Masterprac_group15_C 86.882 60.818 171930 0 0 0 0 171930 0 4214 215 4166 18722 12428 12428 1 LAQQMENRPSVQAALK Unmodified 1782.9411 0.94105192 1649 Q9Y3Y2-4;Q9Y3Y2;Q9Y3Y2-3;Q5T7Y7 CHTOP Chromatin target of PRMT1 protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 99.349 96.591 3 0.0019971 2 65873 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.75 15.503 6186700 0 0 0 0 0 6186700 4215 1649 4167 18723 12429;12430 12429 2 LAQQQAAAAAAAAAAASQQGSAK Unmodified 2054.0505 0.050479026 185 B7Z475;Q9BZK7;C9JLJ1;C9JCK0;C9JBN1;C9IYU9 TBL1XR1 F-box-like/WD repeat-containing protein TBL1XR1 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 130.41 125.57 2;3 7.2577E-55 6 85703 20150910_Q1_SA_NiHu_Masterprac_group15_B 111.6 90.241 56031000 0 23628000 12341000 2934600 0 17128000 4216 185 4168 18724;18725;18726;18727;18728 12431;12432;12433;12434;12435;12436 12434 6 LAQQQAALLMQQEER Unmodified 1755.8938 0.89376737 1083 Q13435;E9PPJ0;E9PJ04;H0YCG1;E9PJT3;E9PIL8;H0YDT7 SF3B2 Splicing factor 3B subunit 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 130.54 129.93 2 7.5434E-21 1 83338 20150910_Q1_SA_NiHu_Masterprac_group10_B 110.22 53.803 2283300 0 2283300 0 0 0 0 4217 1083 4169 18729 12437 12437 1 LAQVQVQK Unmodified 912.53927 0.53926584 1030 Q01780;Q01780-2 EXOSC10 Exosome component 10 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 58.698 52.36 2 0.0058315 3 37578 20150910_Q1_SA_NiHu_Masterprac_group10_B 107.59 56.534 10714000 0 2401900 5389200 537800 605720 1779400 4218 1030 4170 18730;18731;18732;18733;18734 12438;12439;12440 12440 3 LARASGNYATVISHNPETK Unmodified 2028.0389 0.038851707 456 E9PKZ0;P62917;G3V1A1;E9PIZ3 RPL8 60S ribosomal protein L8 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 1 1 2 1 94.621 86.779 3;4 0.0014017 5 59025 20150910_Q1_SA_NiHu_Masterprac_group13_B 55.536 42.368 22248000 13377000 2632500 1340900 3901100 996970 0 4219 456 4171 18735;18736;18737;18738;18739;18740;18741 12441;12442;12443;12444;12445 12442 5 LARFVAEGGPELEK Unmodified 1514.8093 0.80929269 1283 Q8IWZ8 SUGP1 SURP and G-patch domain-containing protein 1 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 117.99 110.12 3 0.0012299 2 73125 20150910_Q1_SA_NiHu_Masterprac_group10_C 84.62 52.739 18339000 4537800 4654300 3808800 2134000 0 3203700 4220 1283 4172 18742;18743;18744;18745;18746 12446;12447 12447 2 LARLEAQEQAFLAR Unmodified 1614.8842 0.88418897 1191 Q5T3I0;Q5T3I0-3;E9PAV9;F8W895 GPATCH4 G patch domain-containing protein 4 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 132.15 118.05 3 1.9161E-20 3 78249 20150910_Q1_SA_NiHu_Masterprac_group10_C 111.66 96.37 36512000 6728300 0 14121000 0 2129200 13534000 4221 1191 4173 18747;18748;18749;18750 12448;12449;12450 12450 2 LASAQEVAGSTSAK Unmodified 1318.6729 0.67285879 1291 Q8IYL3 C1orf174 UPF0688 protein C1orf174 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 67.758 60.438 2 1.6071E-69 9 42435 20150910_Q1_SA_NiHu_Masterprac_group15_B 132.51 108.78 11592000 3696600 961230 967920 1375100 2816100 1775200 4222 1291 4174 18751;18752;18753;18754;18755;18756;18757 12451;12452;12453;12454;12455;12456;12457;12458;12459 12453 8 LASERNLFISCK Unmodified 1436.7446 0.74458394 913 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 3 2 1 114.09 104.97 2;3 4.334E-26 7 69153 20150910_Q1_SA_NiHu_Masterprac_group10_B 120.55 81.545 283930000 451640 59489000 60168000 65972000 37356000 60498000 4223 913 4175 18758;18759;18760;18761;18762;18763;18764;18765;18766;18767;18768 12460;12461;12462;12463;12464;12465;12466 12466 7 LASLGDTASPLVK Unmodified 1270.7133 0.71326704 147 B4DZN9;Q6P4F7 ARHGAP11A Rho GTPase-activating protein 11A yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 130.17 129.87 2 1.3654E-09 2 83064 20150910_Q1_SA_NiHu_Masterprac_group10_B 105.66 66.785 19100000 0 17640000 0 1459600 0 0 4224 147 4176 18769;18770 12467;12468 12468 2 LASQGDSISSQLGPIHPPPR Unmodified 2056.0702 0.070151836 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 131.27 121.77 3 3.4127E-82 6 86030 20150910_Q1_SA_NiHu_Masterprac_group15_B 127.32 109.43 198340000 37395000 49150000 27239000 16682000 6766100 61106000 4225 1366 4177 18771;18772;18773;18774;18775;18776 12469;12470;12471;12472;12473;12474 12470 6 LASRAVAPPTPASK Unmodified 1364.7776 0.77759863 1114 Q14781 CBX2 Chromobox protein homolog 2 yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 68.311 64.226 3 0.0061821 2 46351 20150910_Q1_SA_NiHu_Masterprac_group10_C 54.898 42.135 1508200 661720 0 0 846470 0 0 4226 1114 4178 18777;18778 12475;12476 12476 2 LASSELER Unmodified 903.46616 0.46616048 848 P17275 JUNB Transcription factor jun-B yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 63.645 53.267 2 0.0091649 3 43356 20150910_Q1_SA_NiHu_Masterprac_group15_C 101.72 46.045 6601200 0 1926300 2410300 0 2264600 0 4227 848 4179 18779;18780;18781 12477;12478;12479 12478 3 LASTIADNQEQDLEK Unmodified 1673.8108 0.81080883 1416 Q96R06;E9PMD0 SPAG5 Sperm-associated antigen 5 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 95.958 94.15 2 0.019141 1 63181 20150910_Q1_SA_NiHu_Masterprac_group10_B 42.958 18.084 617310 0 617310 0 0 0 0 4228 1416 4180 18782 12480 12480 1 LASTNSSVLGADLPSSMKEK Unmodified 2034.0303 0.030320435 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;H0YA99;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 131.36 122.85 3 0 5 83551 20150910_Q1_SA_NiHu_Masterprac_group10_B 205.65 145.02 258940000 57029000 156060000 0 34318000 11533000 0 4229 383;1082 4181 18783;18784;18785;18786 12481;12482;12483;12484;12485 12483 5 LASTNSSVLGADLPSSMKEKAK Unmodified 2233.1624 0.16239724 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;H0YA99;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 2 By MS/MS By matching By matching By matching By matching By MS/MS 2 1 1 1 124.29 116.93 3;4 1.6756E-06 4 76215 20150910_Q1_SA_NiHu_Masterprac_group10_C 66.777 43.082 44688000 30339000 3905800 0 4469600 0 5974600 4230 383;1082 4182 18787;18788;18789;18790;18791 12486;12487;12488;12489 12488 4 LASTPFKGGTLFGGEVCK Unmodified 1867.9502 0.95021962 913 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 2 134.43 125.74 2;3 1.9757E-271 9 82209 20150910_Q1_SA_NiHu_Masterprac_group15_C 173.51 134.7 1378500000 269440000 287170000 0 140910000 136690000 544280000 4231 913 4183 18792;18793;18794;18795;18796;18797;18798;18799;18800 12490;12491;12492;12493;12494;12495;12496;12497;12498 12493 9 LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEK Unmodified 2773.4246 0.4246366 616 H0YDD8;P05387 RPLP2 60S acidic ribosomal protein P2 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 131.54 123.03 3 5.0329E-08 4 83926 20150910_Q1_SA_NiHu_Masterprac_group10_B 47.162 34.624 34716000 10679000 18891000 0 3026000 2120700 0 4232 616 4184 18801;18802;18803;18804 12499;12500;12501;12502 12500 4 LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKK Unmodified 2901.5196 0.51959961 616 H0YDD8;P05387 RPLP2 60S acidic ribosomal protein P2 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 130.54 117.74 3 1.0464E-51 3 84839 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.939 73.684 29855000 14080000 0 0 0 1230300 14545000 4233 616 4185 18805;18806;18807 12503;12504;12505 12503 3 LASVPEYR Unmodified 933.49198 0.4919813 1017 P85037;P85037-2;F5H8G8;I3L0E1 FOXK1 Forkhead box protein K1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 2 1 103.49 90.326 2 0.0091649 3 56462 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.72 31.723 52311000 0 0 979920 0 48432000 2899600 4234 1017 4186 18808;18809;18810;18811 12506;12507;12508 12506 3 LASYLDK Unmodified 808.43307 0.43306943 899;298;286;304;297 P35527;CON__P35527;Q99456;CON__Q99456;P13645;CON__P13645;CON__P08730-1;CON__A2A4G1;C9JM50;P08727;CON__P08727;CON__P19001;CON__P05784;P19012;CON__P19012;P02533;CON__P02533;Q04695;CON__Q04695;H9KV34;A8MW45;CON__Q9QWL7;F5H7G6;C9JH30;P08779;CON__P08779 KRT9;KRT12;KRT10;KRT19;KRT15;KRT14;KRT17;KRT16 Keratin, type I cytoskeletal 9;Keratin, type I cytoskeletal 12;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 19;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 16 no no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 2 2 83.816 67.699 1;2 0.0060524 3 54079 20150910_Q1_SA_NiHu_Masterprac_group13_C 95.352 50.631 29827000 0 0 22571000 0 7255300 0 + 4235 899;298;286;304;297 4187 18812;18813;18814;18815 12509;12510;12511 12509 3 LATNTSAPDLK Unmodified 1129.5979 0.59790293 388 E7EVA0;P27816-6;P27816;P27816-2;P27816-4;E9PGM5;P27816-5;B9ZVR1;H0Y2V1;B4DSQ1;F8W9U4;H7C4C5;B5MEG9 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 80.225 74.05 2 0.00052145 6 52438 20150910_Q1_SA_NiHu_Masterprac_group10_C 95.618 62.619 15317000 3580700 1173500 0 2162100 5014700 3386100 4236 388 4188 18816;18817;18818;18819;18820;18821 12512;12513;12514;12515;12516;12517 12517 6 LATNTSAPDLKNVR Unmodified 1498.8104 0.81035532 388 E7EVA0;P27816-6;P27816;P27816-2;P27816-4;E9PGM5;P27816-5;B9ZVR1;H0Y2V1;B4DSQ1;F8W9U4;H7C4C5;B5MEG9 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 3 2 93.517 85.018 2;3 6.2525E-70 8 63087 20150910_Q1_SA_NiHu_Masterprac_group15_C 136.24 101.21 68365000 11430000 8845200 10477000 9513400 13439000 14661000 4237 388 4189 18822;18823;18824;18825;18826;18827;18828;18829;18830;18831;18832;18833;18834;18835 12518;12519;12520;12521;12522;12523;12524;12525 12522 8 LATQLTGPVMPVRNVYK Unmodified 1886.0448 0.044788708 880 P26373;F5H1S2 RPL13 60S ribosomal protein L13 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 132.81 124.67 3 6.8374E-20 2 85251 20150910_Q1_SA_NiHu_Masterprac_group10_B 96.707 58.308 30764000 23365000 7399800 0 0 0 0 4238 880 4190 18836;18837 12526;12527 12526 1 LATSPGASSK Unmodified 917.48181 0.48181054 1680 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 2 1 76.542 70.025 2 0.0061752 1 49826 20150910_Q1_SA_NiHu_Masterprac_group10_C 85.862 8.3286 4840900 3458100 1382800 0 0 0 0 + 4239 1680 4191 18838;18839;18840 12528 12528 1 LATTILQHWK Unmodified 1209.687 0.68699271 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 2 131.78 123.96 2;3 0 6 86815 20150910_Q1_SA_NiHu_Masterprac_group15_B 209.6 166.3 178990000 0 18351000 38620000 0 33891000 88130000 4240 1012 4192 18841;18842;18843;18844;18845;18846 12529;12530;12531;12532;12533;12534 12531 6 LATTILQHWKK Unmodified 1337.782 0.78195573 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 114.55 110.49 2 1.3862E-07 1 75538 20150910_Q1_SA_NiHu_Masterprac_group15_B 111.63 111.63 2746300 0 0 0 0 0 2746300 4241 1012 4193 18847 12535 12535 1 LATTTTDTSSVPK Unmodified 1320.6773 0.67727546 366 Q4W8S1;F5GWX1;E9PGL3;E7ER26;F6QQW4;E9PF37;E9PDJ6;P57071 ZNF298;PRDM15 PR domain zinc finger protein 15 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 80.063 64.422 2 0.0065897 1 50508 20150910_Q1_SA_NiHu_Masterprac_group15_C 59.116 37.089 670860 0 0 0 0 670860 0 4242 366 4194 18848 12536 12536 1 LAVDTFPAR Unmodified 988.53418 0.53418046 1519 Q9HC52 CBX8 Chromobox protein homolog 8 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 115.94 108.34 2 0.011026 1 74035 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.783 46.234 6701900 154650 1107300 0 407410 1005500 4027100 4243 1519 4195 18849;18850;18851;18852;18853 12537 12537 1 LAVDTFPARVIK Unmodified 1328.7816 0.78162138 1519 Q9HC52 CBX8 Chromobox protein homolog 8 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 132.43 127.47 3 0.0013621 1 87402 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.469 59.435 24996000 0 0 0 0 0 24996000 4244 1519 4196 18854 12538 12538 1 LAVDTFPARVIKHR Unmodified 1621.9416 0.94164427 1519 Q9HC52 CBX8 Chromobox protein homolog 8 yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 116.02 106.85 4 0.029375 1 77512 20150910_Q1_SA_NiHu_Masterprac_group13_C 40.767 20.11 3957700 0 1023300 1537500 742390 654490 0 4245 1519 4197 18855;18856;18857;18858 12539 12539 1 LAVNCQAEATPLTLK Unmodified 1627.8603 0.86034198 1557 Q9NWW7;C9JZF3;C9JJF4 C2orf42 Uncharacterized protein C2orf42 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.89 131.29 2 2.4817E-13 1 84710 20150910_Q1_SA_NiHu_Masterprac_group10_B 102.29 61.921 4422400 0 4422400 0 0 0 0 4246 1557 4198 18859 12540 12540 1 LAVNMVPFPR Unmodified 1142.627 0.62703499 1007;542 P68371;E7EWR1;Q5ST81;F5H8C9;Q9BVA1;Q13885;F5H894;B4DFH6;B4DJ43;P04350;F5H0I4;A8K854;C9JAA5;Q5SQY0;Q3ZCM7;Q13509;B3KS31;I3L2F9;A6NNZ2;A6NKZ8;Q9H4B7;CON__ENSEMBL:ENSBTAP00000025008;F8VUJ7;Q5JP53;F8VYX6;F8VW92;P07437 TUBB4B;TUBB;TUBB2B;TUBB2A;TUBB4A;TUBB8;TUBB3;TUBB6;TUBB1 Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-3 chain;Tubulin beta-8 chain-like protein LOC260334;Putative tubulin beta chain-like protein ENSP00000290377;Tubulin beta-1 chain;Tubulin beta chain no no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 133.62 115.62 2 1.8762E-19 1 84688 20150910_Q1_SA_NiHu_Masterprac_group13_C 138.98 94.658 27515000 0 0 27515000 0 0 0 4247 1007;542 4199 18860 12541 12541 0 LAYMELQQK Unmodified 1122.5743 0.57433072 936 P49454 CENPF Centromere protein F yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 109.92 106.26 2 0.029566 1 72772 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.711 24.215 852450 0 0 0 0 0 852450 4248 936 4200 18861 12542 12542 1 LCAMVADNPSYNTK Unmodified 1582.712 0.71196318 947 P49916-2;P49916 LIG3 DNA ligase 3 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 1 1 1 1 1 108.03 98.645 2 0.0013395 3 67225 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.92 32.395 7540900 1170500 719890 784070 949720 2016800 1900000 4249 947 4201 18862;18863;18864;18865;18866;18867;18868 12543;12544;12545 12543 3 LCCLHKPGGSGLTGAK Unmodified 1654.8283 0.82833035 1184 Q5JXM0;Q96B26 DKFZp564C0482;EXOSC8 Exosome complex component RRP43 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 2 2 2 2 2 72.801 65.562 3;4 0.0029202 2 45748 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.335 37.014 17454000 0 1859000 1870200 1078200 3506200 9140500 4250 1184 4202 18869;18870;18871;18872;18873;18874;18875;18876;18877;18878 12546;12547 12547 2 LCDASFSSPAVAQAHYQGK Unmodified 2035.9422 0.94217413 1510 Q9HA38-2;Q9HA38 ZMAT3 Zinc finger matrin-type protein 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 114.77 108.9 3 1.0887E-10 2 74934 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.8 82.297 5341600 0 1069800 1951700 611650 0 1708400 4251 1510 4203 18879;18880;18881;18882 12548;12549 12549 2 LCECSFNDPNAK Unmodified 1453.5966 0.59659908 1403 Q96KR1;B5MEH6 ZFR Zinc finger RNA-binding protein yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 84.861 77.141 2 2.3384E-140 10 53999 20150910_Q1_SA_NiHu_Masterprac_group10_C 160.86 134.15 326040000 78694000 51179000 47199000 35899000 52544000 60524000 4252 1403 4204 18883;18884;18885;18886;18887;18888;18889 12550;12551;12552;12553;12554;12555;12556;12557;12558;12559 12558 10 LCEDQNGNPYVK Unmodified 1435.6402 0.64017845 767 O95235;B4DL79 KIF20A Kinesin-like protein KIF20A yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 76.758 70.023 2 0.039705 1 48910 20150910_Q1_SA_NiHu_Masterprac_group10_B 44.564 30.321 1878300 0 596350 0 0 411780 870150 4253 767 4205 18890;18891;18892 12560 12560 1 LCELQPEEK Unmodified 1144.5434 0.54342452 221 C9IZD2;C9J8Z7;C9JLE1;F8W8R3;P49005 POLD2 DNA polymerase delta subunit 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 75.397 68.118 2 3.3183E-19 1 47772 20150910_Q1_SA_NiHu_Masterprac_group10_B 125.71 93.384 3061600 0 622870 990980 157460 394540 895760 4254 221 4206 18893;18894;18895;18896;18897 12561 12561 1 LCFSTAQHAS Unmodified 1120.4971 0.49714303 838 P14866;A6NIT8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 2 85.297 78.335 2 6.0313E-77 6 60473 20150910_Q1_SA_NiHu_Masterprac_group13_C 148.94 114.69 917760000 139980000 156010000 117080000 101140000 157460000 246080000 4255 838 4207 18898;18899;18900;18901;18902;18903;18904;18905 12562;12563;12564;12565;12566;12567 12563 6 LCFSTSSHL Unmodified 1050.4804 0.48043033 236 Q8WVV9-4;C9J9G0;Q8WVV9;Q5JB52;B7WPG3 HNRNPLL;HNRPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 126.06 116.59 2 6.8504E-12 6 76756 20150910_Q1_SA_NiHu_Masterprac_group10_B 122.18 77.799 64943000 13446000 10410000 11196000 2855500 4961200 22074000 4256 236 4208 18906;18907;18908;18909;18910;18911 12568;12569;12570;12571;12572;12573 12572 6 LCHEGDCGPCSR Unmodified 1446.5439 0.543852 1066 Q12986;Q12986-2;F5GXD0;Q12986-3 NFX1 Transcriptional repressor NF-X1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 35.494 31.22 3 0.023896 1 21344 20150910_Q1_SA_NiHu_Masterprac_group10_B 48.115 47.126 3530500 375810 907070 1481600 0 0 766050 4257 1066 4209 18912;18913;18914;18915 12574 12574 1 LCNDHEVLTFIK Unmodified 1487.7442 0.74424959 236 Q8WVV9-4;C9J9G0;Q8WVV9;Q5JB52;B7WPG3;H7C0J6;H7C464 HNRNPLL;HNRPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 132.94 127.98 3 5.3141E-119 2 87970 20150910_Q1_SA_NiHu_Masterprac_group15_B 160.52 113.22 17982000 0 0 0 0 0 17982000 4258 236 4210 18916;18917 12575;12576 12575 2 LCNDHEVLTFIKYK Unmodified 1778.9025 0.90254115 236 Q8WVV9-4;C9J9G0;Q8WVV9;Q5JB52;B7WPG3;H7C0J6;H7C464 HNRNPLL;HNRPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 132.51 127.55 4 0.0011517 1 87483 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.24 64.085 100560000 0 0 0 0 0 100560000 4259 236 4211 18918 12577 12577 1 LCNIFSTK Unmodified 981.49535 0.49535211 1035;655 P11388;H7BXX8;P11388-2;P11388-3;P11388-4;C9J5P2;H7BXH5;Q02880-2;Q02880;E9PCY5 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta;DNA topoisomerase 2 no no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 119.49 111.15 2 0.007944 1 80027 20150910_Q1_SA_NiHu_Masterprac_group13_C 104.06 58.975 75340000 0 14662000 20052000 6646400 1316100 32662000 4260 655;1035 4212 18919;18920;18921;18922;18923 12578 12578 1 LCNVTLNSAQQAQAHYQGK Unmodified 2130.0276 0.027635094 1510 Q9HA38-2;Q9HA38;C9J8H5 ZMAT3 Zinc finger matrin-type protein 3 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 104 98.415 3 0.0012354 3 65281 20150910_Q1_SA_NiHu_Masterprac_group10_B 53.504 36.297 4632100 0 1075400 1043100 779190 0 1734400 4261 1510 4213 18924;18925;18926;18927;18928 12579;12580;12581 12581 3 LCQALAINK Unmodified 1029.5641 0.56410038 594 G5E9E2;Q5J9I4;P29372-2;P29372;A2IDA3 MPG DNA-3-methyladenine glycosylase yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 93.568 85.689 2 0.0061761 6 58152 20150910_Q1_SA_NiHu_Masterprac_group10_B 93.143 52.261 363160000 15623000 71899000 49037000 33880000 53971000 138750000 4262 594 4214 18929;18930;18931;18932;18933;18934 12582;12583;12584;12585;12586;12587 12586 6 LCQALAINKSFDQR Unmodified 1662.8512 0.85117428 594 G5E9E2;Q5J9I4;P29372-2;P29372;A2IDA3 MPG DNA-3-methyladenine glycosylase yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 1 2 122.48 114.66 2;3 1.5145E-12 9 75820 20150910_Q1_SA_NiHu_Masterprac_group10_C 101.43 66.377 118840000 48112000 24289000 29923000 6328200 2137500 8053000 4263 594 4215 18935;18936;18937;18938;18939;18940;18941;18942;18943;18944 12588;12589;12590;12591;12592;12593;12594;12595;12596 12595 9 LCQDLPCFSR Unmodified 1294.5798 0.5798268 697 O14929-2;O14929 HAT1 Histone acetyltransferase type B catalytic subunit yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 127.16 124.37 2 5.6374E-15 2 84075 20150910_Q1_SA_NiHu_Masterprac_group15_B 119.27 68.47 5895000 0 561880 0 0 0 5333100 4264 697 4216 18945;18946 12597;12598 12597 2 LCSAHGVLVPGGFGVRGTEGK Unmodified 2097.0789 0.078942383 852 P17812;B4DR64 CTPS1 CTP synthase 1 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 130.88 117.7 3;4 7.1203E-135 6 85135 20150910_Q1_SA_NiHu_Masterprac_group15_B 142.72 129.47 204110000 43631000 0 49036000 0 18536000 92910000 4265 852 4217 18947;18948;18949;18950;18951;18952 12599;12600;12601;12602;12603;12604 12601 6 LCSDACFSK Unmodified 1086.4474 0.44741564 1213 Q5VZL5-2;Q5VZL5;H7C1I7;Q5VZL5-3;Q5VZL5-4 ZMYM4 Zinc finger MYM-type protein 4 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 68.731 60.685 2 0.016747 1 42805 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.607 33.853 1776800 0 0 469640 199140 356760 751290 4266 1213 4218 18953;18954;18955;18956 12605 12605 1 LCSLFYTNEEVAK Unmodified 1572.7494 0.74939455 52 P43243;A8MXP9;B3KM87;P43243-2;Q68E03 MATR3;DKFZp686L22104 Matrin-3 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 133.23 133.23 2 5.3455E-110 1 86288 20150910_Q1_SA_NiHu_Masterprac_group13_B 151.7 112.68 40491000 0 0 0 40491000 0 0 4267 52 4219 18957 12606 12606 1 LCSLFYTNEEVAKNTHCSSLPHYQK Unmodified 3025.4062 0.40622612 52 P43243;A8MXP9;B3KM87;P43243-2;Q68E03 MATR3;DKFZp686L22104 Matrin-3 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 130.89 130.89 5 0.014358 1 83868 20150910_Q1_SA_NiHu_Masterprac_group13_B 44.541 28.506 14450000 0 0 0 14450000 0 0 4268 52 4220 18958 12607 12607 1 LCSSAETLESHPDIGK Unmodified 1742.8145 0.814514 779 O96028-5;O96028-3;O96028;O96028-6 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 3 101.59 93.878 2;3 6.2427E-64 10 62806 20150910_Q1_SA_NiHu_Masterprac_group10_B 125.36 108.36 65899000 10432000 11840000 11220000 6778800 8124900 17503000 4269 779 4221 18959;18960;18961;18962;18963;18964;18965;18966;18967;18968;18969 12608;12609;12610;12611;12612;12613;12614;12615;12616;12617 12613 9 LCTVNSVEEK Unmodified 1177.5649 0.56488824 952;951 P51531-2;P51531;P51532-5;P51532-2;P51532-3;P51532-4;P51532;Q9HBD4;F5H0X5 SMARCA2;SMARCA4 Probable global transcription activator SNF2L2;Transcription activator BRG1 no no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 69.012 60.966 2 0.0096339 2 49261 20150910_Q1_SA_NiHu_Masterprac_group13_C 75.416 35.791 6330000 0 0 756520 355910 1516900 3700600 4270 951;952 4222 18970;18971;18972;18973 12618;12619 12618 2 LCVLHEKTPVSEK Unmodified 1538.8127 0.81266351 294 CON__P02769 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 2 83.96 78.423 3 1.5812E-24 6 54019 20150910_Q1_SA_NiHu_Masterprac_group15_B 117.93 89.549 36439000 4664700 5130400 4079200 6796200 3719600 12049000 + 4271 294 4223 18974;18975;18976;18977;18978;18979;18980;18981;18982 12620;12621;12622;12623;12624;12625 12622 6 LCYGLNMDFVDPAQITMK Unmodified 2114.9839 0.98390429 870 P23921;H0YFI0 RRM1 Ribonucleoside-diphosphate reductase large subunit yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 134.12 129.15 2 1.1193E-13 1 89305 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.143 72.612 33741000 0 0 0 0 0 33741000 4272 870 4224 18983 12626 12626 1 LCYIGAGDEEK Unmodified 1253.5598 0.55980286 1404 Q96L73-2;Q96L73-3;Q96L73 NSD1 Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 95.289 86.276 2 0.024289 1 65308 20150910_Q1_SA_NiHu_Masterprac_group13_C 53.211 38.532 7082000 387220 0 1362000 473540 1566300 3292900 4273 1404 4225 18984;18985;18986;18987;18988 12627 12627 1 LDAEDVIGSR Unmodified 1073.5353 0.53530267 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 120.83 111.26 2 8.4932E-09 7 75811 20150910_Q1_SA_NiHu_Masterprac_group15_B 113.44 65.354 85260000 8243400 11154000 16483000 3324600 1521200 44534000 4274 919;920 4226 18989;18990;18991;18992;18993;18994 12628;12629;12630;12631;12632;12633;12634 12630 7 LDAEDVIGSRR Unmodified 1229.6364 0.6364137 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 102.4 99.341 3 0.0041574 1 67692 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.704 43.98 698570 0 0 0 0 0 698570 4275 919;920 4227 18995 12635 12635 1 LDAEDVIGSRRQPR Unmodified 1610.8489 0.84886609 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 104.96 93.166 3 0.025397 1 63594 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.495 41.776 27981000 2808700 0 7025100 0 6060800 12086000 4276 919;920 4228 18996;18997;18998;18999 12636 12636 1 LDAEPRPPPTQEAA Unmodified 1490.7365 0.73652168 165 B4E363;Q9Y285 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 86.167 84.185 2 0.0047155 1 57366 20150910_Q1_SA_NiHu_Masterprac_group10_B 67.019 51.518 970010 0 615470 0 0 0 354540 4277 165 4229 19000;19001 12637 12637 1 LDAFIEALHQEK Unmodified 1412.73 0.72997974 336 O60313;E5KLK1;E5KLJ6;E5KLJ9;O60313-2;E5KLJ5 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 133.17 125.33 2 1.8417E-193 2 85822 20150910_Q1_SA_NiHu_Masterprac_group13_B 176.99 149.56 14844000 8856000 0 0 5988300 0 0 4278 336 4230 19002;19003 12638;12639 12638 1 LDASILEDR Unmodified 1030.5295 0.52948901 1359 Q92785 DPF2 Zinc finger protein ubi-d4 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 127.38 124.6 2 0.022182 1 84222 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.626 15.537 1815400 0 369690 0 0 0 1445700 4279 1359 4231 19004;19005 12640 12640 1 LDDANDAGGRNSTECTLILTEGDSAK Unmodified 2722.2352 0.23518085 655 P11388;H7BXX8;P11388-2;P11388-3;P11388-4;C9J5P2;H7BXH5 TOP2A DNA topoisomerase 2-alpha yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 128.42 120.16 3 4.7285E-117 5 84547 20150910_Q1_SA_NiHu_Masterprac_group15_B 130.16 122.97 123580000 0 11150000 75812000 5057200 5439600 26123000 4280 655 4232 19006;19007;19008;19009;19010 12641;12642;12643;12644;12645 12643 5 LDDIEEFENIRK Unmodified 1519.7518 0.75183739 1329 Q8NHZ8 CDC26 Anaphase-promoting complex subunit CDC26 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 132.91 117.22 3 1.0238E-50 1 78647 20150910_Q1_SA_NiHu_Masterprac_group10_C 134.13 86.418 5596800 5596800 0 0 0 0 0 4281 1329 4233 19011 12646 12646 1 LDDSSKLPGQAPEGLKVK Unmodified 1881.0207 0.020742027 701 O15014 ZNF609 Zinc finger protein 609 yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 110.49 100.89 3 0.004461 2 68992 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.977 55.076 6054900 0 0 715050 1123100 1341000 2875800 4282 701 4234 19012;19013;19014;19015 12647;12648 12647 2 LDDTPSGAGKFPAGHSVIQLAR Unmodified 2236.16 0.16002948 1519 Q9HC52;C9J6K3 CBX8 Chromobox protein homolog 8 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 131.44 126.47 4 0.011973 1 86304 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.991 27.564 18793000 0 0 0 0 0 18793000 4283 1519 4235 19016 12649 12649 1 LDEEFEK Unmodified 908.41273 0.41272792 238 C9JA69;Q8WY36-2;Q8WY36 BBX HMG box transcription factor BBX yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 71.888 64.56 2 2.7948E-31 4 45463 20150910_Q1_SA_NiHu_Masterprac_group10_B 130.04 65.282 25460000 2570500 3553000 7299400 2155500 4234600 5646400 4284 238 4236 19017;19018;19019;19020;19021;19022 12650;12651;12652;12653 12651 4 LDEFTNDFAK Unmodified 1198.5506 0.55061839 1255 Q7Z6E9;H3BSK8 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 123.91 122.05 2 0.03377 1 82613 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.806 32.794 4726900 0 1732300 0 1181600 0 1813000 4285 1255 4237 19023;19024;19025 12654 12654 1 LDEKNNAFPCQVNIKQK Unmodified 2045.0364 0.036408866 1533 Q9NQW6;Q9NQW6-2;H7C1K5 ANLN Actin-binding protein anillin yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 102.77 94.606 4 0.0030031 3 63354 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.568 48.637 9351600 0 3609600 2438500 0 1121200 2182400 4286 1533 4238 19026;19027;19028;19029;19030 12655;12656;12657 12657 3 LDEYIAIAK Unmodified 1034.5648 0.56481189 132 E9PR63;E9PQE5;B4DV59;Q9P2K3-2;Q9P2K3-4;Q9UKL0;Q9P2K3;Q9P2K3-3 RCOR3;RCOR1 REST corepressor 3;REST corepressor 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 122.78 120.15 2 4.005E-07 1 81347 20150910_Q1_SA_NiHu_Masterprac_group15_B 117.89 64.115 2873000 0 1006400 0 0 0 1866600 4287 132 4239 19031;19032 12658 12658 1 LDFHEAQQK Unmodified 1114.5407 0.5407224 1118 Q14966-3;Q14966;Q14966-4;Q14966-2;C9JBI6;F5H330;C9JWN0 ZNF638 Zinc finger protein 638 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 66.762 58.872 2 3.0893E-69 2 41635 20150910_Q1_SA_NiHu_Masterprac_group15_B 150.35 100.32 8605100 1287800 0 1820000 1030000 2087700 2379600 4288 1118 4240 19033;19034;19035;19036;19037 12659;12660 12659 2 LDFNTDEEK Unmodified 1109.4877 0.48768378 527 F5H7E2;P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 90.645 79.115 2 0.016022 1 54574 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.376 48.755 2705100 0 0 390860 0 565450 1748700 4289 527 4241 19038;19039;19040 12661 12661 1 LDHVQFAEFK Unmodified 1232.619 0.61897272 1228 Q6PCB5-2;Q6PCB5 RSBN1L Round spermatid basic protein 1-like protein yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 121.88 121.57 3 0.016665 1 78012 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.624 43.966 2369000 0 1576900 0 792170 0 0 4290 1228 4242 19041;19042 12662 12662 1 LDHVVTIIKGK Unmodified 1221.7445 0.74450759 454 E9PKG1;Q99873-3;Q99873-2;G5E9B6;Q99873;H7C2I1;E9PNR9;E9PQ98;E9PIX6;H0YDE4;B4DJ87 PRMT1 Protein arginine N-methyltransferase 1 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 90.494 83.014 3 5.6471E-55 4 56913 20150910_Q1_SA_NiHu_Masterprac_group15_B 138.25 129.35 14487000 0 1472900 2493900 1002800 3765200 5752400 4291 454 4243 19043;19044;19045;19046;19047 12663;12664;12665;12666 12663 4 LDIAFGTHHTK Unmodified 1238.6408 0.6407708 357 G3V2F4;E7EPD8;Q9NUW8;G3V2J6;G3V2U6;Q9BRS7;H0YJL7 TDP1 Tyrosyl-DNA phosphodiesterase 1 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 93.556 85.996 3 3.6319E-09 5 63687 20150910_Q1_SA_NiHu_Masterprac_group15_C 112.83 90.272 17962000 0 2020200 3510800 2704100 3532500 6194400 4292 357 4244 19048;19049;19050;19051;19052 12667;12668;12669;12670;12671 12670 5 LDIEQYR Unmodified 935.47125 0.47124585 918 P43304;F5GYK7;P43304-2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 104.95 97.617 2 0.040637 1 66411 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.116 17.154 3833100 0 535800 0 0 895180 2402100 4293 918 4245 19053;19054;19055 12672 12672 1 LDILGAAETGSGK Unmodified 1230.6456 0.6455814 588 G3V529;Q9GZR7;F5H4J5;Q4V9L5 DDX24 ATP-dependent RNA helicase DDX24 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 131.6 128.81 2 0.014755 2 83922 20150910_Q1_SA_NiHu_Masterprac_group10_B 51.771 26.07 18169000 0 9471700 0 0 0 8697700 4294 588 4246 19056;19057 12673;12674 12674 2 LDIQEALK Unmodified 928.52295 0.52294707 1388 Q96GM5-2;Q96GM5;F8VW95;F8VZ70;F8VUB0 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 59.117 53.928 2 0.034536 1 38717 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.825 1.4539 2894600 688630 2206000 0 0 0 0 4295 1388 4247 19058;19059 12675 12675 1 LDKLENSAAPKK Unmodified 1312.7351 0.73506511 1083 Q13435;E9PPJ0 SF3B2 Splicing factor 3B subunit 2 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 43.688 35.668 3 0.038301 1 25918 20150910_Q1_SA_NiHu_Masterprac_group10_C 61.48 31.144 1351500 228150 0 1123300 0 0 0 4296 1083 4248 19060;19061 12676 12676 0 LDKSQIHDIVLVGGSTR Unmodified 1837.0058 0.005760665 824 P11142;E9PKE3;P11142-2;E9PNE6;E9PN89;A8K7Q2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 129.2 128.6 3 0.0054689 1 82251 20150910_Q1_SA_NiHu_Masterprac_group10_B 46.925 25.671 1316500 0 1316500 0 0 0 0 4297 824 4249 19062 12677 12677 1 LDKSQIHDIVLVGGSTRIPK Unmodified 2175.2376 0.23755152 824 P11142;E9PKE3;P11142-2;E9PNE6;E9PN89;A8K7Q2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 2 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 131.92 124.08 4 8.0826E-27 2 84530 20150910_Q1_SA_NiHu_Masterprac_group13_B 102.79 93.735 28308000 14748000 0 0 13559000 0 0 4298 824 4250 19063;19064 12678;12679 12678 2 LDLAGTLPGSK Unmodified 1070.5972 0.59717465 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 131.59 120.9 2 2.2832E-128 7 78328 20150910_Q1_SA_NiHu_Masterprac_group10_C 166.29 112.32 819490000 184130000 234420000 146980000 32277000 24682000 196990000 4299 919;920 4251 19065;19066;19067;19068;19069;19070;19071 12680;12681;12682;12683;12684;12685;12686 12686 7 LDLCIGHRLGKDFSANFEEK Unmodified 2348.1583 0.15831492 1674 yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By matching 2 1 132.64 132.24 4 0.0050187 1 85358 20150910_Q1_SA_NiHu_Masterprac_group10_B 44.998 10.603 5051700000 0 3974000000 0 1077700000 0 0 + 4300 1674 4252 19072;19073;19074 12687 12687 1 LDLGAQGKGQGHQYELNSK Unmodified 2042.0181 0.018116265 687 O00257;O00257-3 CBX4 E3 SUMO-protein ligase CBX4 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 1 1 2 1 1 92.853 85.784 3;4 1.1062E-38 5 58696 20150910_Q1_SA_NiHu_Masterprac_group10_C 112.44 93.505 44307000 14188000 3548600 2986300 15014000 4206900 4362500 4301 687 4253 19075;19076;19077;19078;19079;19080;19081;19082 12688;12689;12690;12691;12692 12691 5 LDLLMQK Unmodified 859.48372 0.48372479 588 G3V529;Q9GZR7;F5H4J5;Q4V9L5;F5GYL3;F5H4V3 DDX24 ATP-dependent RNA helicase DDX24 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 127.72 118.24 2 1.8321E-31 5 77610 20150910_Q1_SA_NiHu_Masterprac_group10_C 139.92 25.894 71787000 29521000 4034000 15654000 5637100 8553900 8386700 4302 588 4254 19083;19084;19085;19086;19087;19088 12693;12694;12695;12696;12697 12697 5 LDLPGNLPGSK Unmodified 1109.6081 0.60807369 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1 133.28 121.96 2 1.7516E-86 7 81407 20150910_Q1_SA_NiHu_Masterprac_group15_C 151.13 107.36 821440000 148740000 149600000 168330000 55556000 101710000 197500000 4303 919;920 4255 19089;19090;19091;19092;19093;19094;19095;19096 12698;12699;12700;12701;12702;12703;12704 12701 7 LDLTENLTGSK Unmodified 1189.619 0.6190323 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 3 2 3 126.72 119.62 2 4.8124E-208 10 82357 20150910_Q1_SA_NiHu_Masterprac_group13_C 184.44 112.35 846090000 290100000 112400000 192680000 39843000 31347000 179720000 4304 919;920 4256 19097;19098;19099;19100;19101;19102;19103;19104;19105;19106;19107;19108 12705;12706;12707;12708;12709;12710;12711;12712;12713;12714 12707 10 LDLTENLTGSKRR Unmodified 1501.8213 0.82125436 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 102.18 92.421 3 0.0271 1 62256 20150910_Q1_SA_NiHu_Masterprac_group10_C 56.936 32.007 4124500 1243300 1107500 1773700 0 0 0 4305 919;920 4257 19109;19110;19111 12715 12715 1 LDNARQSAERNSNLVGAAHEELQQSR Unmodified 2892.4187 0.41865679 783 P02545;P02545-3;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q3BDU5;Q5TCJ4;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 108.13 99.313 4 0.020816 1 65794 20150910_Q1_SA_NiHu_Masterprac_group10_B 31.38 11.348 20684000 2434800 3120600 5525000 2152700 1829400 5621300 4306 783 4258 19112;19113;19114;19115;19116;19117 12716 12716 1 LDNEIKALDSRK Unmodified 1400.7623 0.7623425 1362 Q92878-2;Q92878;Q92878-3;E7EN38;E7ESD9 RAD50 DNA repair protein RAD50 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 85.218 76.797 3 0.019084 1 59816 20150910_Q1_SA_NiHu_Masterprac_group13_C 63.181 40.63 6097500 1520100 0 2277400 2300000 0 0 4307 1362 4259 19118;19119;19120 12717 12717 1 LDNGGYYITTR Unmodified 1271.6146 0.61461563 803 P07947;E5RFS5;P06241-3;Q5R3A8;B3KPS6;P06241-2;P06241 YES1;FYN Tyrosine-protein kinase Yes;Tyrosine-protein kinase Fyn yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 105.59 97.669 2 1.5479E-05 5 66337 20150910_Q1_SA_NiHu_Masterprac_group15_B 105.03 75.028 10192000 0 1822100 1980900 937230 1622500 3829000 4308 803 4260 19121;19122;19123;19124;19125 12718;12719;12720;12721;12722 12719 5 LDPAASVTGSK Unmodified 1044.5451 0.54513908 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 1 1 1 2 1 80.571 71.898 2 0.0037335 4 50379 20150910_Q1_SA_NiHu_Masterprac_group10_C 80.871 44.424 562700000 103250000 87768000 91894000 41738000 60235000 177820000 4309 919;920 4261 19126;19127;19128;19129;19130;19131;19132;19133 12723;12724;12725;12726 12725 4 LDPEIVPEEK Unmodified 1167.6023 0.60231961 709 O43148;O43148-2 RNMT mRNA cap guanine-N7 methyltransferase yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 114.83 105.7 2 2.3531E-06 4 69838 20150910_Q1_SA_NiHu_Masterprac_group10_B 112.85 62.812 28665000 3714000 6120600 3783200 2929600 3061200 9056700 4310 709 4262 19134;19135;19136;19137;19138;19139 12727;12728;12729;12730 12729 4 LDPEIVPEEKDCGDAEGNSK Unmodified 2200.9794 0.97940708 709 O43148;O43148-2 RNMT mRNA cap guanine-N7 methyltransferase yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 108.16 97.963 3 0.00011418 3 66178 20150910_Q1_SA_NiHu_Masterprac_group10_C 72.21 56.583 17353000 2989200 0 5087900 3085500 2747300 3443000 4311 709 4263 19140;19141;19142;19143;19144 12731;12732;12733 12733 3 LDQDLNEVKAR Unmodified 1299.6783 0.67827852 1625 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 70.089 68.006 3 9.5337E-13 3 47250 20150910_Q1_SA_NiHu_Masterprac_group15_B 115 34.765 3110600 0 850080 0 0 0 2260500 4312 1625 4264 19145;19146 12734;12735;12736 12734 3 LDQEMEQLNHHTTTR Unmodified 1851.8534 0.85335912 1362 Q92878-2;Q92878;Q92878-3;E7ESD9;H7C0P8 RAD50 DNA repair protein RAD50 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 74.083 69.37 3 0.0020693 1 48077 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.657 47.492 1353400 354070 0 0 0 0 999330 4313 1362 4265 19147;19148 12737 12737 1 LDQGNLHTSVSSAQGQDAAQSEEK Unmodified 2499.1474 0.14735212 1582 Q9UBG3 CRNN Cornulin yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 95.39 79.147 3 0.018068 1 59444 20150910_Q1_SA_NiHu_Masterprac_group15_C 33.594 33.594 2154100 0 0 0 0 2154100 0 4314 1582 4266 19149 12738 12738 1 LDQPGNLPGSNR Unmodified 1266.6317 0.63166267 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 1 1 1 82.629 75.632 2 4.11E-07 4 53318 20150910_Q1_SA_NiHu_Masterprac_group10_C 101.53 64.388 14467000 2790100 0 2935700 2373000 0 6368300 4315 919;920 4267 19150;19151;19152;19153;19154 12739;12740;12741;12742 12742 4 LDQPGNLPGSNRR Unmodified 1422.7328 0.7327737 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 72.313 64.851 3 0.00071833 7 47152 20150910_Q1_SA_NiHu_Masterprac_group10_C 75.788 37.115 307820000 47314000 47382000 44989000 20493000 55303000 92337000 4316 919;920 4268 19155;19156;19157;19158;19159;19160;19161 12743;12744;12745;12746;12747;12748;12749 12749 7 LDQTHLETVIPAPGK Unmodified 1617.8726 0.87262123 136 B4DX32;O60870;F5GXB3 KIN DNA/RNA-binding protein KIN17 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 130.76 125.44 3 4.5104E-43 4 85863 20150910_Q1_SA_NiHu_Masterprac_group15_B 123.76 82.278 35742000 5358100 9754600 0 4031400 0 16598000 4317 136 4269 19162;19163;19164;19165 12750;12751;12752;12753 12751 4 LDQWLCEK Unmodified 1090.5117 0.51173046 283 CON__P00711 yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 112.6 105.28 2 0.0066147 3 69774 20150910_Q1_SA_NiHu_Masterprac_group10_B 106.6 64.203 8143000 973010 1714400 0 858840 1971300 2625500 + 4318 283 4270 19166;19167;19168;19169;19170 12754;12755;12756 12756 3 LDRLAYIAHPK Unmodified 1295.735 0.73500553 930 P47914 RPL29 60S ribosomal protein L29 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 91.936 84.416 3 0.0039173 4 62578 20150910_Q1_SA_NiHu_Masterprac_group15_C 80.245 58.849 24118000 0 3148200 3036700 4188700 7518600 6225700 4319 930 4271 19171;19172;19173;19174;19175 12757;12758;12759;12760 12759 4 LDRLNTVASPK Unmodified 1212.6826 0.68263561 1422 Q96T58 SPEN Msx2-interacting protein yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 75.452 67.105 3 0.0048795 1 46778 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.229 44.617 3144900 0 0 581660 484090 932070 1147100 4320 1422 4272 19176;19177;19178;19179 12761 12761 1 LDRTVAEKAVK Unmodified 1228.7139 0.71393574 23 A6NHR9;A6NHR9-2 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 48.976 47.788 3 0.020655 1 33542 20150910_Q1_SA_NiHu_Masterprac_group13_B 69.815 3.6253 3548000 0 1687300 0 764930 0 1095700 4321 23 4273 19180;19181;19182 12762 12762 1 LDSPAGTALSPSGHTK Unmodified 1537.7736 0.77363546 890 P32322;B4DMU0 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial;Pyrroline-5-carboxylate reductase yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 87.757 78.909 3 0.004874 2 54333 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.391 30.763 2438700 0 0 0 0 1022500 1416300 4322 890 4274 19183;19184 12763;12764 12763 2 LDSSPSVSSTLAAK Unmodified 1361.7038 0.70382456 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 101.93 93.578 2 1.2552E-84 4 68122 20150910_Q1_SA_NiHu_Masterprac_group15_C 136.33 71.054 155970000 24262000 17088000 9061100 14186000 69117000 22255000 4323 383;1082 4275 19185;19186;19187;19188;19189;19190;19191;19192 12765;12766;12767;12768 12767 3 LDTVQTLKTAK Unmodified 1216.7027 0.70270235 1302 Q8N5C6 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS 3 2 2 2 2 2 77.506 69.936 2;3 1.2302E-07 4 48627 20150910_Q1_SA_NiHu_Masterprac_group15_B 110.64 71.458 43970000 10614000 6181100 4035400 5578600 8346900 9214400 4324 1302 4276 19193;19194;19195;19196;19197;19198;19199;19200;19201;19202;19203;19204;19205 12769;12770;12771;12772 12771 4 LDVEEPDSANSSFYSTR Unmodified 1915.8436 0.84356552 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;Q9BTE9 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 131.58 117.49 2 1.9784E-181 3 77861 20150910_Q1_SA_NiHu_Masterprac_group10_C 156.29 139.56 36861000 13703000 0 6833700 0 1807400 14516000 4325 1121 4277 19206;19207;19208;19209 12773;12774;12775 12775 3 LDVGEAMAPPSHRK Unmodified 1506.7613 0.76129664 242 E7EV54;Q8IZL8;I3L3A8;C9JFV4;Q8IZL8-2 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 85.812 79.976 3 0.00094143 2 55114 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.019 50.755 10712000 407370 1039500 0 487370 3907700 4870400 4326 242 4278 19210;19211;19212;19213;19214 12776;12777 12776 2 LEAAGPGEPGTKAK Unmodified 1324.6987 0.69867961 1518 Q9HBU1 BARX1 Homeobox protein BarH-like 1 yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 48.441 42.8 3 0.0011291 2 34843 20150910_Q1_SA_NiHu_Masterprac_group13_C 71.558 39.523 2718200 291670 449650 583830 298850 419160 675050 4327 1518 4279 19215;19216;19217;19218;19219;19220 12778;12779 12778 2 LEAAHFDEK Unmodified 1058.5033 0.50327426 1662 Q9Y6V7 DDX49 Probable ATP-dependent RNA helicase DDX49 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 1 65.258 57.158 2 1.1158E-29 4 42021 20150910_Q1_SA_NiHu_Masterprac_group10_C 135.43 95.782 12738000 1506800 1302100 3505000 1083000 2853100 2487700 4328 1662 4280 19221;19222;19223;19224;19225;19226;19227 12780;12781;12782;12783 12783 4 LEAALGEAK Unmodified 900.49165 0.49164694 783 P02545;P02545-3;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q3BDU5;Q5TCJ4;Q5TCI8;H0YAB0 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 70.808 65.21 2 0.0087494 2 45518 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.882 24.774 4761000 0 0 0 1053300 1329000 2378700 4329 783 4281 19228;19229;19230 12784;12785 12784 2 LEAAQNVLLCK Unmodified 1257.6751 0.67510739 379 E7ET21;Q9NVC6 MED17 Mediator of RNA polymerase II transcription subunit 17 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 2 1 128.87 116.83 2 0.0043556 2 80194 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.288 61.023 6134700 5340800 0 0 0 0 793880 4330 379 4282 19231;19232;19233 12786;12787 12786 2 LEAASSALGGPTLTHAVTR Unmodified 1850.985 0.98502522 180 B7WPF4;Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 24 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 129.37 124.41 3 0.00022412 1 84156 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.944 56.105 2301900 0 0 0 0 0 2301900 4331 180 4283 19234 12788 12788 1 LEAAVAQSEQQGEAALSDARCK Unmodified 2331.1125 0.11248694 282 O43790;CON__O43790;F8W6V8;A6NCN2;P78385;CON__Q6NT21;CON__P78385;Q14533;CON__Q14533 KRT86;KRT121P;KRT83;KRT81 Keratin, type II cuticular Hb6;Keratin-81-like protein KRT121P;Keratin, type II cuticular Hb3;Keratin, type II cuticular Hb1 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 127.12 127.12 3 0.0073752 1 81113 20150910_Q1_SA_NiHu_Masterprac_group13_B 41.689 30.924 455710 0 0 0 455710 0 0 + 4332 282 4284 19235 12789 12789 1 LEAELLQIEERHQEK Unmodified 1863.969 0.96904081 85 C0IMW5;B4DFR4;Q969G3-2;B4DGM3;Q969G3;H7C048;H7BXG8;H7C3F6 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 131.19 115.5 3 2.9627E-08 1 76783 20150910_Q1_SA_NiHu_Masterprac_group10_C 95.428 69.886 4926300 4926300 0 0 0 0 0 4333 85 4285 19236 12790 12790 1 LEAIVQK Unmodified 799.48035 0.48035398 39;1591 Q9UGU0-2;Q9UGU0;Q7Z5J4-3;E7EVZ3;Q7Z5J4;A8MTC3;Q7Z5J4-2;C9JWB0 TCF20;RAI1 Transcription factor 20;Retinoic acid-induced protein 1 no no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 69.429 60.229 2 0.0078714 1 48605 20150910_Q1_SA_NiHu_Masterprac_group13_C 97.473 10.961 1706100 0 588140 1117900 0 0 0 4334 1591;39 4286 19237;19238 12791 12791 1 LEALRAEVSK Unmodified 1114.6346 0.63462279 1121 Q14980-2;Q14980;F5H2L0 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 78.314 70.68 2 3.1638E-138 7 49356 20150910_Q1_SA_NiHu_Masterprac_group10_B 166.86 87.374 24698000 4172600 3729200 3980500 1681900 5025000 6109200 4335 1121 4287 19239;19240;19241;19242;19243;19244;19245 12792;12793;12794;12795;12796;12797;12798 12796 7 LEALSVKEETK Unmodified 1245.6816 0.68163256 272 H7C137;C9JXG8;P43487 RANBP1 Ran-specific GTPase-activating protein yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 81.882 73.956 2;3 2.4308E-05 11 51186 20150910_Q1_SA_NiHu_Masterprac_group15_B 103.91 75.201 14597000 1344200 1004200 2864700 2423500 2507300 4452700 4336 272 4288 19246;19247;19248;19249;19250;19251;19252;19253;19254;19255 12799;12800;12801;12802;12803;12804;12805;12806;12807;12808;12809 12805 10 LEAQEQAFLAR Unmodified 1274.6619 0.66190017 1191 Q5T3I0;Q5T3I0-3;E9PAV9;F8W895 GPATCH4 G patch domain-containing protein 4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 118.87 113.3 2 0.0030558 2 73762 20150910_Q1_SA_NiHu_Masterprac_group10_B 84.507 60.231 4753800 2592100 1194500 0 967100 0 0 4337 1191 4289 19256;19257;19258 12810;12811 12811 2 LEAQETLNEEDKAK Unmodified 1616.7893 0.78934511 540 H0YII3;Q9UIF9-2;Q9UIF9-3;F8VU39;Q9UIF9 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 74.684 67.404 3 0.0011274 2 54069 20150910_Q1_SA_NiHu_Masterprac_group13_C 76.326 50.796 6638800 0 1496200 875390 1014900 2167800 1084500 4338 540 4290 19259;19260;19261;19262;19263 12812;12813 12812 2 LEATAASSVK Unmodified 975.52368 0.52367535 1533 Q9NQW6;Q9NQW6-2;C9JJT6 ANLN Actin-binding protein anillin yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 55.35 47.88 2 0.0086058 2 34387 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.017 56.241 3573000 0 1149700 1225600 0 436660 761060 4339 1533 4291 19264;19265;19266;19267 12814;12815 12815 2 LEATAASSVKTR Unmodified 1232.6725 0.67246486 1533 Q9NQW6;Q9NQW6-2;C9JJT6 ANLN Actin-binding protein anillin yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 52.322 46.271 2;3 0.0019061 9 38907 20150910_Q1_SA_NiHu_Masterprac_group15_C 84.605 60.894 28504000 3163700 7476300 4028400 1565400 5946000 6324100 4340 1533 4292 19268;19269;19270;19271;19272;19273;19274;19275;19276;19277;19278;19279;19280 12816;12817;12818;12819;12820;12821;12822;12823;12824 12820 9 LEAVQYK Unmodified 849.45962 0.45961853 781 P01040;C9J0E4 CSTA Cystatin-A;Cystatin-A, N-terminally processed yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 75.739 60.15 2 0.040161 1 48868 20150910_Q1_SA_NiHu_Masterprac_group13_C 83.377 20.66 3118200 0 0 3118200 0 0 0 4341 781 4293 19281 12825 12825 1 LECDEECSALER Unmodified 1509.6076 0.60755769 1066 Q12986;Q12986-2;E9PG33 NFX1 Transcriptional repressor NF-X1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 81.336 79.881 2 0.0019013 2 54970 20150910_Q1_SA_NiHu_Masterprac_group15_B 85.672 55.467 796190 0 0 0 0 0 796190 4342 1066 4294 19282 12826;12827 12827 2 LECDLQQR Unmodified 1060.4971 0.49714303 506 F5H0W5;Q9BR77-2;Q9BR77 CCDC77 Coiled-coil domain-containing protein 77 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 54.442 53.388 2 0.021668 1 38143 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.516 43.364 422270 0 0 0 0 0 422270 4343 506 4295 19283 12828 12828 1 LECLLNECTSLCENRK Unmodified 2037.9282 0.92818032 936 P49454 CENPF Centromere protein F yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 126.6 124.74 3 0.00033333 2 84624 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.898 61.471 5875100 0 1659300 0 362750 0 3853000 4344 936 4296 19284;19285;19286 12829;12830 12829 2 LECQDIINK Unmodified 1131.5594 0.55940893 1175 Q562F6-2;Q562F6 SGOL2 Shugoshin-like 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 87.07 81.38 2 0.00074828 1 55486 20150910_Q1_SA_NiHu_Masterprac_group10_B 109.66 60.683 1396600 477420 919130 0 0 0 0 4345 1175 4297 19287;19288 12831 12831 1 LECVKTKHPQLHIESK Unmodified 1946.0408 0.040765963 932;939 P49674;B0QY35;B0QY34;B0QY36;B4DLF1;P48730-2;P48730 CSNK1E;CSNK1D Casein kinase I isoform epsilon;Casein kinase I isoform delta no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 65.9 64.746 4 0.0074618 1 45159 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.324 29.338 1796000 0 0 0 0 0 1796000 4346 939;932 4298 19289 12832 12832 1 LEDGPKFLK Unmodified 1045.5808 0.5807963 1006 Q5VTE0;P68104;Q6IQ15;F8W6I0 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 97.458 87.784 2 0.03517 1 59919 20150910_Q1_SA_NiHu_Masterprac_group10_C 79.489 2.1715 1566400 1566400 0 0 0 0 0 4347 1006 4299 19290 12833 12833 1 LEDLQQFQK Unmodified 1147.5873 0.58733824 1609 Q9ULM3 YEATS2 YEATS domain-containing protein 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 107.95 100.43 2 0.0087494 1 68428 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.882 54.467 1703300 0 610950 294620 0 0 797690 4348 1609 4300 19291;19292;19293 12834 12834 1 LEDSTRETQSQLETER Unmodified 1920.9025 0.90247738 840 P15924;P15924-2 DSP Desmoplakin yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 76.661 69.341 3 0.0033905 2 48080 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.491 38.697 5165800 0 610260 2273400 357160 569190 1355800 4349 840 4301 19294;19295;19296;19297;19298 12835;12836 12835 2 LEDTHFVQCPSVPSHK Unmodified 1879.8887 0.888682 1254 Q7Z5L9-2;Q7Z5L9;Q7Z5L9-3;Q9H1B7 IRF2BP2;IRF2BPL Interferon regulatory factor 2-binding protein 2;Interferon regulatory factor 2-binding protein-like yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 99.967 94.786 4 0.004983 1 64675 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.548 9.1719 2409300 322170 434750 0 0 0 1652300 4350 1254 4302 19299;19300;19301 12837 12837 1 LEEANGNTQMVEK Unmodified 1461.677 0.67695789 757 O94906-2;O94906 PRPF6 Pre-mRNA-processing factor 6 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 68.858 62.289 2 0.0013462 2 49036 20150910_Q1_SA_NiHu_Masterprac_group15_C 76.01 46.372 1489400 0 148960 0 0 361580 978830 4351 757 4303 19302;19303;19304 12838;12839 12839 2 LEEDINSSMTNSTAASRPPVTLR Unmodified 2488.2228 0.22276567 1135 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 131.12 128.33 3 1.0998E-08 2 83621 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.536 32.829 65134000 0 37072000 0 0 0 28061000 4352 1135 4304 19305;19306 12840;12841 12841 2 LEEDISSSMTNSTAASRPPVTLR Unmodified 2461.2119 0.21186663 548 F8VZX2;Q15366-4;Q15366-5;Q15366-3;Q15366;Q15366-2;H3BRU6;G3V0E8;B4DXP5;B4DRD7;F8W0G4;B4DLC0;F8VXH9;F8W1G6;H3BND9 PCBP2 Poly(rC)-binding protein 2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 131.67 128.89 3 1.9857E-10 2 84235 20150910_Q1_SA_NiHu_Masterprac_group10_B 81.157 65.141 21525000 0 10421000 0 0 0 11104000 4353 548 4305 19307;19308 12842;12843 12843 2 LEEEALHEYREDSNDK Unmodified 1975.8759 0.87592828 1236 Q6UB99 ANKRD11 Ankyrin repeat domain-containing protein 11 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 86.831 77.081 3 0.019967 1 53103 20150910_Q1_SA_NiHu_Masterprac_group10_B 40.941 33.167 1378300 0 704950 673340 0 0 0 4354 1236 4306 19309;19310 12844 12844 1 LEEELKAR Unmodified 986.53966 0.53965977 676 H9KV59;O43663;H0YL53;G3V3N7 PRC1 Protein regulator of cytokinesis 1 no no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 49.395 48.207 2 0.020895 2 34389 20150910_Q1_SA_NiHu_Masterprac_group10_B 103.83 18.621 4433300 0 2159900 0 529300 0 1744100 4355 676 4307 19311;19312;19313 12845;12846 12846 2 LEEFVNGLDKQVK Unmodified 1517.809 0.80895834 1202 Q5VT52-3;Q5VT52;B4E2Q6;Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 124.34 121.61 3 0.033233 1 77914 20150910_Q1_SA_NiHu_Masterprac_group10_B 43.761 19.507 2320000 0 865910 0 0 0 1454100 4356 1202 4308 19314;19315 12847 12847 1 LEELGLAGR Unmodified 956.5291 0.52909508 370 E7ERH6;Q9UBN7 HDAC6 Histone deacetylase 6 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 110.09 102.76 2 0.028575 1 69670 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.157 2.6941 8366800 1457300 1292300 720900 1028400 0 3868000 4357 370 4309 19316;19317;19318;19319;19320 12848 12848 1 LEELRQHAACK Unmodified 1353.6823 0.68231804 768 O95239;O95239-2 KIF4A Chromosome-associated kinesin KIF4A yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 38.317 37.296 3 0.011339 2 26025 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.028 19.078 7555300 0 3937700 0 804820 0 2812800 4358 768 4310 19321;19322;19323 12849;12850 12850 2 LEELTMDGAK Unmodified 1105.5325 0.53252548 692 O00567;H0YDU4;Q5JXT2 NOP56 Nucleolar protein 56 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1 103.94 94.204 2 3.0441E-15 8 68524 20150910_Q1_SA_NiHu_Masterprac_group15_C 121.9 55.207 32308000 4417600 2139100 1751100 4447600 12203000 7349400 4359 692 4311 19324;19325;19326;19327;19328;19329;19330;19331 12851;12852;12853;12854;12855;12856;12857;12858 12856 8 LEELTMDGAKAK Unmodified 1304.6646 0.66460229 692 O00567;H0YDU4;Q5JXT2 NOP56 Nucleolar protein 56 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 2 2 88.213 80.575 2;3 2.2939E-12 7 55793 20150910_Q1_SA_NiHu_Masterprac_group10_C 111.5 70.881 48202000 11605000 4346000 3423600 5262100 11893000 11673000 4360 692 4312 19332;19333;19334;19335;19336;19337;19338;19339;19340;19341;19342 12859;12860;12861;12862;12863;12864;12865 12865 7 LEENIDNIK Unmodified 1086.5557 0.55570376 1362 Q92878-2;Q92878;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 95.013 87.099 2 2.2966E-41 4 65807 20150910_Q1_SA_NiHu_Masterprac_group13_C 137.95 52.283 32557000 1620100 4744700 5196000 3991100 6522000 10483000 4361 1362 4313 19343;19344;19345;19346;19347;19348 12866;12867;12868;12869 12866 4 LEENIDNIKR Unmodified 1242.6568 0.65681479 1362 Q92878-2;Q92878;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 1 80.599 74.333 3 0.0069909 4 51554 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.275 39.271 4906800 1189000 1101700 762870 663240 0 1190000 4362 1362 4314 19349;19350;19351;19352;19353;19354 12870;12871;12872;12873 12872 4 LEERLRLLQAETASNSAR Unmodified 2056.1025 0.1025146 1121 Q14980-2;Q14980;F5H2L0;H0YFY6 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 130.15 113.3 4 0.0020525 2 80939 20150910_Q1_SA_NiHu_Masterprac_group13_C 52.52 42.829 7149300 1984100 0 5165200 0 0 0 4363 1121 4315 19355;19356 12874;12875 12874 2 LEESYTLNSDLAR Unmodified 1509.7311 0.73110195 166 B4E3A8;P30740;B4DNT0 SERPINB1 Leukocyte elastase inhibitor yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 126.06 124.2 2 0.0022319 2 79466 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.345 29.765 3317000 0 1404600 0 289400 0 1622900 4364 166 4316 19357;19358;19359 12876;12877 12877 2 LEETLTREQK Unmodified 1245.6565 0.65648044 515 F5H3H6;Q9BQ39 DDX50 ATP-dependent RNA helicase DDX50 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 56.876 50.639 3 0.03626 1 36240 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.064 12.821 3437800 0 678620 760370 283110 1062100 653580 4365 515 4317 19360;19361;19362;19363;19364 12878 12878 1 LEFNKAEKHVHNFMMDIQYTK 2 Oxidation (M) 2654.2621 0.26212806 708 O15554 KCNN4 Intermediate conductance calcium-activated potassium channel protein 4 yes yes 0 2 2 By matching By matching By matching By matching By matching By MS/MS 1 131.15 126.19 3 0.024325 1 85958 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.054 23.757 0 0 0 0 0 0 0 4366 708 4318 19365 12879 12879 71;72 1 LEGEPSVRKPK Unmodified 1238.6983 0.69828568 1231 Q6PJG2;F6RU81 ELMSAN1 ELM2 and SANT domain-containing protein 1 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 48.763 42.095 3 0.019431 1 30961 20150910_Q1_SA_NiHu_Masterprac_group10_C 70.399 42.717 6274300 858540 874040 721410 0 1324700 2495600 4367 1231 4319 19366;19367;19368;19369;19370 12880 12880 1 LEGSSGGIGERYK Unmodified 1351.6732 0.67319314 1652 Q9Y5B6-3;Q9Y5B6-4;Q9Y5B6-2;Q9Y5B6 PAXBP1 PAX3- and PAX7-binding protein 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 72.682 57.643 3 0.031258 1 46321 20150910_Q1_SA_NiHu_Masterprac_group15_C 44.426 18.414 218810 0 0 0 0 218810 0 4368 1652 4320 19371 12881 12881 1 LEGVLVNHNEPR Unmodified 1375.7208 0.72081203 481 Q86TC9-2;F5H7I9;Q86TC9;F5GWA6 MYPN Myopalladin yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 90.701 79.171 3 0.037808 1 61178 20150910_Q1_SA_NiHu_Masterprac_group13_C 42.843 22.736 3656300 0 0 942610 0 1076300 1637500 4369 481 4321 19372;19373;19374 12882 12882 1 LEINVLK Unmodified 827.51165 0.5116541 944 P49761-1;P49761;H3BUL5;H3BVF8;H3BQG1;P49761-3;G5E959 CLK3 Dual specificity protein kinase CLK3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.06 126.09 2 0.022234 1 85845 20150910_Q1_SA_NiHu_Masterprac_group15_B 107.43 10.358 8689900 0 0 0 0 0 8689900 4370 944 4322 19375 12883 12883 1 LEKECQSSEESMGSNSMR Unmodified 2087.8558 0.85580324 1161 Q2TAK8;Q2TAK8-2 MUM1 PWWP domain-containing protein MUM1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 67.579 57.252 3 0.019989 1 46759 20150910_Q1_SA_NiHu_Masterprac_group13_C 38.777 28.09 1632200 0 0 703460 0 231070 697650 4371 1161 4323 19376;19377;19378 12884 12884 1 LELDALR Unmodified 828.47052 0.47051757 1612;707 Q9ULX9-2;Q9ULX9;B0QY71;B0QY70;O15525;O60675 MAFF;MAFG;MAFK Transcription factor MafF;Transcription factor MafG;Transcription factor MafK no no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 124.54 119.77 2 0.040677 1 81288 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.784 7.3687 848320 0 0 0 0 0 848320 4372 1612;707 4324 19379 12885 12885 1 LELEVETVEKKK Unmodified 1443.8185 0.81846039 483 F5GYH8;F5GWE4;F5H4M2;P54198 C22orf39;HIRA Protein HIRA yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 103.39 91.258 3 0.040417 1 62373 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.551 35.155 1828800 0 0 884660 0 245240 698930 4373 483 4325 19380;19381;19382 12886 12886 1 LELTNETSENPTQSPWCSQYRR Unmodified 2695.2296 0.22964196 259 O60566-2;C9JLW5;O60566;O60566-3 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 131.82 126.86 3 0.0051716 1 86681 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.905 22.98 2887400 0 0 0 0 0 2887400 4374 259 4326 19383 12887 12887 1 LELVDNKITTKK Unmodified 1400.8239 0.82388012 514 F5H2U2;Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog yes no 0 0 2 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 94.409 81.801 3 0.012035 2 56095 20150910_Q1_SA_NiHu_Masterprac_group10_C 67.385 42.37 1798100 520100 0 0 0 1278000 0 4375 514 4327 19384;19385 12888;12889 12889 2 LEMCSEIKGPQK Unmodified 1418.6898 0.68977118 1545 Q9NUA8;F8WAI8;B1AKC8 ZBTB40 Zinc finger and BTB domain-containing protein 40 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 92.902 83.991 3 0.0020552 1 62356 20150910_Q1_SA_NiHu_Masterprac_group15_C 76.332 54.419 3533800 0 958960 580430 880080 1114300 0 4376 1545 4328 19386;19387;19388;19389 12890 12890 1 LEMLLKENELK Unmodified 1358.7479 0.74793799 1332 Q8NI77 KIF18A Kinesin-like protein KIF18A yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 130.99 130.99 3 0.0068574 1 83904 20150910_Q1_SA_NiHu_Masterprac_group13_B 69.65 17.672 1339100 0 0 0 1339100 0 0 4377 1332 4329 19390 12891 12891 1 LENEIQTYR Unmodified 1164.5775 0.57750184 298 P13645;CON__P13645;CON__P02535-1 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 90.106 80.715 2 0.030316 1 55406 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.374 33.485 2278800 248960 1794700 235080 0 0 0 + 4378 298 4330 19391;19392;19393 12892 12892 1 LENTFCCQQK Unmodified 1326.5697 0.56965604 54 Q9NSV4-6;A8MYX0;Q9NSV4-5;C9JL55;Q9NSV4-4;C9JDG1;Q9NSV4;C9JDG0;Q9NSV4-1;A6NG52;Q9NSV4-7;Q9NSV4-2;F8W838 DIAPH3 Protein diaphanous homolog 3 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 71.029 64.035 2 0.01037 5 46394 20150910_Q1_SA_NiHu_Masterprac_group10_C 73.499 36.815 4852900 642500 740970 0 0 1624600 1844900 4379 54 4331 19394;19395;19396;19397 12893;12894;12895;12896;12897 12897 5 LENVSQLSLDKSPTEK Unmodified 1786.9313 0.93125832 1268 Q86W56-3;Q86W56-2;Q86W56 PARG Poly(ADP-ribose) glycohydrolase yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 116.83 109.17 3 0.0046251 2 73148 20150910_Q1_SA_NiHu_Masterprac_group10_C 51.03 34.451 8748900 2205400 2064800 0 1382300 1449600 1646800 4380 1268 4332 19398;19399;19400;19401;19402 12898;12899 12899 2 LEPKPQPPVAEATPR Unmodified 1628.8886 0.88860564 1593 Q9UHD8-3;Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8 SEPT9 Septin-9 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 93.703 84.554 3 0.0026574 1 57882 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.885 31.556 3560500 0 0 0 0 1160100 2400300 4381 1593 4333 19403;19404 12900 12900 1 LEPLHFLQCHSK Unmodified 1507.7606 0.76056836 1587 Q9UFC0 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 130.53 127.74 3 0.012094 2 82829 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.261 30.909 13167000 0 2447600 0 0 0 10719000 4382 1587 4334 19405;19406 12901;12902 12902 2 LEPNLGEDDEDKDLEPGPSGTSK Unmodified 2441.1082 0.10817264 1360 Q92797;Q92797-3;Q92797-2 SYMPK Symplekin yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 126.54 110.85 3 0.038152 1 73621 20150910_Q1_SA_NiHu_Masterprac_group10_C 40.622 27.83 1141000 1141000 0 0 0 0 0 4383 1360 4335 19407 12903 12903 0 LEPSTSTDQPVTPEPTSQATR Unmodified 2241.0761 0.076084654 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 105.16 94.381 3 0.036053 1 63548 20150910_Q1_SA_NiHu_Masterprac_group10_C 31.488 13.924 1497000 1497000 0 0 0 0 0 4384 1109 4336 19408 12904 12904 1 LEPSTSTDQPVTPEPTSQATRGR Unmodified 2454.1987 0.19865941 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 93.309 85.729 3 0.0075969 1 58792 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.432 15.246 9474100 0 1768200 994490 1655800 2840200 2215300 4385 1109 4337 19409;19410;19411;19412;19413 12905 12905 1 LEPTNVQTVTCSPR Unmodified 1600.7879 0.78790532 1431 Q99741 CDC6 Cell division control protein 6 homolog yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 102.22 93.936 2 0.0002076 8 63875 20150910_Q1_SA_NiHu_Masterprac_group10_C 88.78 68.047 18919000 2510100 3853300 3012400 2232200 1334100 5976800 4386 1431 4338 19414;19415;19416;19417;19418;19419 12906;12907;12908;12909;12910;12911;12912;12913 12913 8 LEQCNTELK Unmodified 1133.5387 0.53867349 1625 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 61.555 48.295 2 0.032422 1 39925 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.426 17.828 579460 0 0 366600 0 212860 0 4387 1625 4339 19420;19421 12914 12914 1 LEQEAGARQPPPAPR Unmodified 1615.8431 0.84305243 1343 Q8WX93-3;Q8WX93 PALLD Palladin yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 63.693 55.797 3 0.01808 1 39267 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.594 27.796 3169700 0 0 0 0 403110 2766600 4388 1343 4340 19422;19423 12915 12915 1 LEQGTSALIR Unmodified 1086.6033 0.60332266 1280 Q8IWC1-2;Q8IWC1;H7BY77 MAP7D3 MAP7 domain-containing protein 3 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 95.977 86.871 2 0.0020268 6 59479 20150910_Q1_SA_NiHu_Masterprac_group15_B 102.52 51.331 13174000 2409000 0 2765000 1269900 1698800 5031400 4389 1280 4341 19424;19425;19426;19427;19428;19429 12916;12917;12918;12919;12920;12921 12917 6 LEQIQSKDSLDEK Unmodified 1531.773 0.77296676 488 Q6VMQ6-2;G3V1U0;Q6VMQ6;F5GX74;A8MV73 ATF7IP Activating transcription factor 7-interacting protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 62.336 60.947 2 0.00353 1 42798 20150910_Q1_SA_NiHu_Masterprac_group10_B 78.903 24.88 19173000 0 7111300 0 2370000 0 9691300 4390 488 4342 19430;19431;19432 12922 12922 1 LEQLERTAEEQR Unmodified 1500.7532 0.75323437 1179 Q5CZC0-2;Q5CZC0;Q8NAU3;H0Y515 FSIP2 Fibrous sheath-interacting protein 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 105.83 103.35 3 0.013198 1 70713 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.551 32.051 5559200 0 2050100 0 0 0 3509100 4391 1179 4343 19433;19434 12923 12923 1 LEQNLSGEEHLQELLK Unmodified 1878.9687 0.96870646 617 H0YE54;Q92805 GOLGA1 Golgin subfamily A member 1 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 2 1 64.324 56.482 3;4 0.00032581 4 41356 20150910_Q1_SA_NiHu_Masterprac_group10_C 71.031 48.663 37181000 5371300 4800300 6628400 4304600 9677400 6399300 4392 617 4344 19435;19436;19437;19438;19439;19440;19441;19442;19443 12924;12925;12926;12927 12927 4 LEQPDLSSEMSK Unmodified 1362.6337 0.63369609 1340 Q8WUA4;Q8WUA4-2;C9JNH7 GTF3C2 General transcription factor 3C polypeptide 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 108.4 102.68 2 1.9624E-37 1 70079 20150910_Q1_SA_NiHu_Masterprac_group15_B 119.39 82.715 12364000 0 3205900 2536400 965170 0 5656600 4393 1340 4345 19444;19445;19446;19447 12928 12928 1 LEQQCQKQQEQADSLER Unmodified 2116.9807 0.98074448 1121 Q14980-2;Q14980;F5H2L0 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 1 1 1 62.645 56.007 3 0.0010673 7 40644 20150910_Q1_SA_NiHu_Masterprac_group10_C 81.346 64.983 36576000 15009000 9249500 0 4622500 7695600 0 4394 1121 4346 19448;19449;19450;19451;19452 12929;12930;12931;12932;12933;12934;12935 12934 7 LEQYTSAIEGTK Unmodified 1338.6667 0.66671078 396 Q05682-5;E9PGZ1;Q05682-4;F5H1Z9;E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;C9J813;E7EUR9 CALD1 Caldesmon yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 102.52 94.186 2 0.0017862 3 64319 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.644 49.73 12490000 610870 1623300 1092500 3183100 2253100 3727300 4395 396 4347 19453;19454;19455;19456;19457;19458 12936;12937;12938 12937 3 LERPPETPTVDPTVK Unmodified 1677.8938 0.8937506 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 107.92 100.13 3 1.4079E-08 8 66027 20150910_Q1_SA_NiHu_Masterprac_group10_B 98.421 72.456 147900000 2720900 29659000 26234000 1005900 3793900 84491000 4396 486 4348 19459;19460;19461;19462;19463;19464;19465 12939;12940;12941;12942;12943;12944;12945;12946 12945 8 LERPPETPTVDPTVKYER Unmodified 2126.1008 0.10078326 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 2 123.81 105.81 4 0.01264 2 76813 20150910_Q1_SA_NiHu_Masterprac_group13_C 53.504 42.078 2208600 0 0 2208600 0 0 0 4397 486 4349 19466;19467 12947;12948 12947 0 LESESTSPSLEMK Unmodified 1436.6705 0.67047553 1202 Q5VT52-3;Q5VT52;B4E2Q6;Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 94.485 92.503 2 0.020632 1 62272 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.295 38.545 1613700 0 547890 0 0 0 1065800 4398 1202 4350 19468;19469 12949 12949 0 LESLDALEPEEK Unmodified 1371.6769 0.67694111 1115 Q14807;B7Z265;H3BRB3 KIF22 Kinesin-like protein KIF22 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 131.84 122.34 2 4.8311E-290 5 78611 20150910_Q1_SA_NiHu_Masterprac_group10_C 190.66 143.71 427420000 19248000 310650000 31041000 10901000 3674700 51897000 4399 1115 4351 19470;19471;19472;19473;19474;19475 12950;12951;12952;12953;12954 12954 5 LESLEETNPEYAK Unmodified 1521.7199 0.71986856 1205 Q5VUA4;Q5VUA4-2 ZNF318 Zinc finger protein 318 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 99.3 97.592 2 5.1177E-05 2 66263 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.231 41.519 1185200 0 1185200 0 0 0 0 4400 1205 4352 19476;19477 12955;12956 12955 2 LESNNYNTYR Unmodified 1272.5735 0.57347909 809 P09038-2;P09038-3;P09038-1;P09038 FGF2 Fibroblast growth factor 2 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 2 67.687 61.327 2 0.0012985 5 48270 20150910_Q1_SA_NiHu_Masterprac_group15_C 104.22 67.041 7725900 549370 497430 517940 378930 2381800 3400400 4401 809 4353 19478;19479;19480;19481;19482;19483;19484 12957;12958;12959;12960;12961 12958 5 LESSEGEIIQTVDR Unmodified 1574.7788 0.77878042 547 Q99590-2;F8VXG7;Q99590;F8W028 SCAF11 Protein SCAF11 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 130.19 129.59 2 1.4009E-12 1 82999 20150910_Q1_SA_NiHu_Masterprac_group10_B 101.75 70.756 5426500 0 5426500 0 0 0 0 4402 547 4354 19485 12962 12962 1 LESTESRSSFSQHAR Unmodified 1720.8129 0.81287452 783 P02545;P02545-3;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q3BDU5;Q5TCJ4;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 49.302 43.707 4 0.0087689 3 35918 20150910_Q1_SA_NiHu_Masterprac_group13_C 48.467 30.681 5486300 0 893010 1365800 1483800 820200 923410 4403 783 4355 19486;19487;19488;19489;19490 12963;12964;12965 12964 3 LESVFFHSLSGSK Unmodified 1436.73 0.72997974 1322 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.9 132.3 3 4.5258E-09 1 85866 20150910_Q1_SA_NiHu_Masterprac_group10_B 101.39 64.941 9598800 0 9598800 0 0 0 0 4404 1322 4356 19491 12966 12966 1 LETLGSASTSTPGRR Unmodified 1531.7954 0.79543354 169 Q96FF9;B5MBX0 CDCA5 Sororin yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 74.197 68.542 3 0.0019071 2 53287 20150910_Q1_SA_NiHu_Masterprac_group15_C 56.139 29.386 5791800 235070 1008900 0 515700 2133100 1899000 4405 169 4357 19492;19493;19494;19495;19496 12967;12968 12967 2 LETNPDIKPSNVEPMEK Unmodified 1939.9561 0.95609286 1455 Q9BVP2-2;Q9BVP2;C9JYH9;C9JZT7;B4DMU5 GNL3 Guanine nucleotide-binding protein-like 3 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 112.59 104.57 3 0.003885 2 74247 20150910_Q1_SA_NiHu_Masterprac_group15_C 64.588 45.291 25991000 0 1837800 3726200 8299400 8255300 3872400 4406 1455 4358 19497;19498;19499;19500;19501 12969;12970 12970 2 LETTKKPDNVPK Unmodified 1368.7613 0.76127986 1204 Q5VTR2 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 37.846 36.826 3 0.00013796 2 25850 20150910_Q1_SA_NiHu_Masterprac_group10_B 100.04 65.264 2049000 0 758710 0 176840 0 1113400 4407 1204 4359 19502;19503;19504 12971;12972 12972 2 LETVKVSNNAEDPK Unmodified 1542.789 0.78895118 426 E9PFZ0;P38398-4;P38398-2;P38398;E9PFC7;E7EP70;F8W8H7;E7EMP0 BRCA1 Breast cancer type 1 susceptibility protein yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 71.387 64.043 3 0.0011279 5 44673 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.987 32.144 11879000 1299800 2591400 2520500 1384600 2451000 1631700 4408 426 4360 19505;19506;19507;19508;19509;19510 12973;12974;12975;12976;12977 12975 5 LEVAESEFTH Unmodified 1160.535 0.53496832 32 Q99755-2;Q99755-3;A6PW57;Q99755;Q99755-4 PIP5K1A Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 123.78 106.21 2 0.037757 1 76981 20150910_Q1_SA_NiHu_Masterprac_group13_C 44.318 29.857 3535000 0 0 2938400 0 596560 0 4409 32 4361 19511;19512 12978 12978 1 LEVLESQLSEGSQK Unmodified 1545.7886 0.78861683 316 D6RCT6;D6R9E3;Q9BWT6 MND1 Meiotic nuclear division protein 1 homolog yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 124.88 117.18 2 0 6 76934 20150910_Q1_SA_NiHu_Masterprac_group10_C 198.81 147.35 74326000 30147000 4272400 14356000 4232100 3318500 18000000 4410 316 4362 19513;19514;19515;19516;19517;19518;19519;19520 12979;12980;12981;12982;12983;12984 12984 6 LEVQAEEER Unmodified 1101.5302 0.5302173 1486 Q9H307;Q9H307-2 PNN Pinin yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 70.703 59.098 2 0.012117 2 46873 20150910_Q1_SA_NiHu_Masterprac_group15_C 82.029 24.439 8357100 2501800 0 0 0 5855400 0 4411 1486 4363 19521;19522 12985;12986 12985 2 LEVQATDREENK Unmodified 1430.7001 0.70013617 825 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 2 1 1 2 1 53.236 45.33 2;3 5.2804E-18 2 37618 20150910_Q1_SA_NiHu_Masterprac_group15_C 113.69 42.602 7163900 1613000 843030 109850 0 3742100 855940 4412 825 4364 19523;19524;19525;19526;19527;19528;19529 12987;12988 12988 2 LEVQATDREENKQIALGTSK Unmodified 2229.1601 0.16008906 825 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 2 98.939 91.105 3;4 0.00018504 3 62132 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.08 77.08 30462000 4552200 0 0 0 16419000 9490900 4413 825 4365 19530;19531;19532;19533 12989;12990;12991 12989 3 LEVTEIVKPSPK Unmodified 1338.7759 0.7758673 1255 Q7Z6E9;Q7Z6E9-2 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 2 2 1 1 2 120.69 109.17 2;3 0.016357 2 72719 20150910_Q1_SA_NiHu_Masterprac_group10_C 54.005 21.146 11367000 3838400 0 1548200 851630 1298900 3830100 4414 1255 4366 19534;19535;19536;19537;19538;19539;19540;19541 12992;12993 12993 2 LEYNYNSHNVYIMADKQK Unmodified 2229.0525 0.052452861 310 CON__Q9U6Y5 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 121.9 114.05 3;4 6.1409E-45 2 80477 20150910_Q1_SA_NiHu_Masterprac_group13_C 114.01 95.079 8157000 0 4962500 1937800 0 0 1256700 + 4415 310 4367 19542;19543;19544 12994;12995 12994 2 LFAECHVINPSK Unmodified 1413.7075 0.70747015 603 H0Y2Q2;Q9Y4X5 ARIH1 E3 ubiquitin-protein ligase ARIH1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 107.56 98.807 3 0.00038854 3 67414 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.402 60.658 10170000 1533500 1712800 2053400 847160 1887900 2134800 4416 603 4368 19545;19546;19547;19548;19549;19550 12996;12997;12998 12997 3 LFCTSCNVVLNHVRK Unmodified 1845.9342 0.9341924 1588 Q9UFW8;C9JUJ0 CGGBP1 CGG triplet repeat-binding protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 2 1 124.89 114.06 3;4 5.3059E-56 8 80738 20150910_Q1_SA_NiHu_Masterprac_group13_C 126.5 88.301 94292000 24305000 5343500 43560000 8222800 3447500 9412600 4417 1588 4369 19551;19552;19553;19554;19555;19556;19557;19558;19559;19560 12999;13000;13001;13002;13003;13004;13005;13006 13001 8 LFDEEEDSSEK Unmodified 1326.5463 0.54632087 720 O43719;E9PFP2 HTATSF1 HIV Tat-specific factor 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 77.267 70.314 2 0.01798 2 48756 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.164 47.882 2263500 0 546110 589400 0 0 1128000 4418 720 4370 19561;19562;19563 13007;13008 13007 2 LFEAVEEGR Unmodified 1048.5189 0.51892433 389 E7EVD1;O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 105.89 97.64 2 0.021779 1 70436 20150910_Q1_SA_NiHu_Masterprac_group15_C 68.847 23.512 3905700 1329600 0 0 237100 1173200 1165800 4419 389 4371 19564;19565;19566;19567 13009 13009 1 LFECNECGK Unmodified 1155.4689 0.46887937 1131 Q15072 ZNF146 Zinc finger protein OZF yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 67.988 60.042 2 0.00098892 3 42407 20150910_Q1_SA_NiHu_Masterprac_group15_B 108.57 30.457 8022300 0 0 1487500 1159400 2565400 2810000 4420 1131 4372 19568;19569;19570;19571 13010;13011;13012 13012 3 LFEDDDSNEK Unmodified 1210.499 0.49897675 720 O43719;E9PFP2 HTATSF1 HIV Tat-specific factor 1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 63.675 57.391 2 0.0052855 3 40690 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.898 63.754 2225500 0 395990 696010 0 0 1133500 4421 720 4373 19572;19573;19574 13013;13014;13015 13014 3 LFEDLKEDDK Unmodified 1250.603 0.60304789 1107 Q14527;Q14527-2;E7ESN4;F5H3D6 HLTF Helicase-like transcription factor yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 1 2 2 100.44 91.705 2;3 4.1744E-61 6 61745 20150910_Q1_SA_NiHu_Masterprac_group10_B 142.98 98.001 16200000 649960 4902400 2722100 341420 1228000 6356400 4422 1107 4374 19575;19576;19577;19578;19579;19580;19581;19582;19583;19584 13016;13017;13018;13019;13020;13021 13021 6 LFEQEVAQREAQK Unmodified 1574.8053 0.80526994 479 Q9BYW2;F2Z317 SETD2 Histone-lysine N-methyltransferase SETD2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 91.634 86.482 3 0.0022763 2 59224 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.267 42.041 3635400 0 969650 0 221730 634500 1809500 4423 479 4375 19585;19586;19587;19588 13022;13023 13022 2 LFIGGLNTETNEK Unmodified 1434.7355 0.73545904 1379;649 Q96E39;H3BT71;P38159-2;P38159;H0Y6E7;H3BNC1;H3BR27;P38159-3 RBMXL1;RBMX RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 132.95 123.43 2 8.6295E-132 6 85216 20150910_Q1_SA_NiHu_Masterprac_group10_B 159.5 96.336 338110000 111760000 46235000 50125000 15420000 24576000 89994000 4424 1379;649 4376 19589;19590;19591;19592;19593;19594 13024;13025;13026;13027;13028;13029 13028 6 LFIIRGSPQQIDHAK Unmodified 1721.9577 0.95768826 1366 Q92945-2;Q92945 KHSRP Far upstream element-binding protein 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 2 5 12 3 124.44 113.26 2;3;4 1.1065E-20 27 80168 20150910_Q1_SA_NiHu_Masterprac_group13_C 108.97 66.545 3004300000 359990000 265160000 1143200000 331960000 156320000 747680000 4425 1366 4377 19595;19596;19597;19598;19599;19600;19601;19602;19603;19604;19605;19606;19607;19608;19609;19610;19611;19612;19613;19614;19615;19616;19617;19618;19619;19620;19621;19622;19623;19624;19625 13030;13031;13032;13033;13034;13035;13036;13037;13038;13039;13040;13041;13042;13043;13044;13045;13046;13047;13048;13049;13050;13051;13052;13053;13054;13055;13056 13032 27 LFIVESNSSSSTR Unmodified 1425.71 0.70997257 931 P48507 GCLM Glutamate--cysteine ligase regulatory subunit yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 116.36 106.3 2 0.0017341 2 72625 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.262 60.72 6900000 0 2346400 818020 0 1411200 2324400 4426 931 4378 19626;19627;19628;19629 13057;13058 13057 2 LFKQDTSSSTTHLAQQLK Unmodified 2032.0589 0.058918447 1533 Q9NQW6;Q9NQW6-2 ANLN Actin-binding protein anillin yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 2 2 2 1 1 2 107.08 98.335 3;4 0.001781 3 65178 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.975 28.449 13451000 2920300 2702400 3315500 406530 617330 3488500 4427 1533 4379 19630;19631;19632;19633;19634;19635;19636;19637;19638;19639 13059;13060;13061 13060 3 LFKQDTSSSTTHLAQQLKQER Unmodified 2445.2612 0.26120008 1533 Q9NQW6;Q9NQW6-2 ANLN Actin-binding protein anillin yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 110.79 100.2 4 0.025721 1 73484 20150910_Q1_SA_NiHu_Masterprac_group13_C 34.148 19.63 5688100 1231700 711800 1759000 0 634230 1351400 4428 1533 4380 19640;19641;19642;19643;19644 13062 13062 1 LFNEHIEALTK Unmodified 1313.698 0.69795133 696 O14776-2;O14776;G3V220 TCERG1 Transcription elongation regulator 1 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 129 122.12 3 0.00036342 5 77371 20150910_Q1_SA_NiHu_Masterprac_group10_C 96.604 56.82 17701000 4756400 0 0 1031400 0 11913000 4429 696 4381 19645;19646;19647;19648 13063;13064;13065;13066;13067 13067 5 LFNEVQEK Unmodified 1005.5131 0.51311067 1477 Q9H0A0;E7ESU4;E9PMN9 NAT10 N-acetyltransferase 10 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 83.975 76.806 2 0.021976 1 53034 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.264 31.27 4131300 439620 596860 0 0 1737900 1356900 4430 1477 4382 19649;19650;19651;19652 13068 13068 1 LFNHANQEVQR Unmodified 1354.6742 0.67419619 1650 Q9Y446 PKP3 Plakophilin-3 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 1 1 1 2 1 63.274 56.241 2;3 3.0489E-06 8 41482 20150910_Q1_SA_NiHu_Masterprac_group10_C 106.62 67.038 11940000 1473100 1564400 1054400 997310 2864400 3986500 4431 1650 4383 19653;19654;19655;19656;19657;19658;19659;19660 13069;13070;13071;13072;13073;13074;13075;13076 13076 8 LFNTPTENGSLGQSR Unmodified 1619.7903 0.79034816 737 O75132 ZBED4 Zinc finger BED domain-containing protein 4 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 118.11 107.98 2 0.0053654 1 73876 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.599 39.013 3062400 0 502210 240680 0 757090 1562400 4432 737 4384 19661;19662;19663;19664 13077 13077 1 LFPDTPLALDANKKK Unmodified 1669.9403 0.94030686 243 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;C9JFV5;Q12906;G5E9M5;B4DFG4 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 2 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 2 131.89 125.34 3;4 0.00048365 4 84042 20150910_Q1_SA_NiHu_Masterprac_group10_B 83.243 63.973 34770000 6520200 8837800 0 0 0 19411000 4433 243 4385 19665;19666;19667;19668 13078;13079;13080;13081 13080 4 LFQGYETEER Unmodified 1270.583 0.58298115 1218 Q68DK7;Q68DK7-3;Q68DK7-2 MSL1 Male-specific lethal 1 homolog yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 99.815 92.812 2 1.5501E-34 3 63413 20150910_Q1_SA_NiHu_Masterprac_group15_B 131.09 115.22 12205000 0 2685600 0 0 1464200 8055600 4434 1218 4386 19669;19670;19671 13082;13083;13084 13082 3 LFQPVQYGQKPEGR Unmodified 1645.8576 0.85763986 1405 Q96L91-4;Q96L91-3;Q96L91-5;Q96L91-2;Q96L91;A7E2D7 EP400 E1A-binding protein p400 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 111.02 100.74 3 0.039271 1 68842 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.629 29.508 5836300 969810 0 1009200 709310 1162600 1985300 4435 1405 4387 19672;19673;19674;19675;19676 13085 13085 1 LFREPSQADIALLK Unmodified 1599.8984 0.89844205 295 CON__P06868 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 133.15 132.54 3 2.7107E-171 1 86135 20150910_Q1_SA_NiHu_Masterprac_group10_B 162.72 120.41 66309000 0 66309000 0 0 0 0 + 4436 295 4388 19677 13086 13086 1 LFSGLSVSSEGPSQR Unmodified 1549.7736 0.77363546 42 A8MTM6;Q15398;Q15398-1 DLGAP5 Disks large-associated protein 5 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.86 126.9 2 0.027277 1 86781 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.493 15.529 20255000 0 0 0 0 0 20255000 4437 42 4389 19678 13087 13087 1 LFSGLSVSSEGPSQRLGTPK Unmodified 2046.0746 0.074568512 42 A8MTM6;Q15398;Q15398-1 DLGAP5 Disks large-associated protein 5 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 132.34 124.93 3 2.563E-38 3 83315 20150910_Q1_SA_NiHu_Masterprac_group13_C 108.47 83.798 85942000 0 38720000 23614000 21196000 2410800 0 4438 42 4390 19679;19680;19681;19682;19683 13088;13089;13090 13089 3 LFSQDECAK Unmodified 1096.4859 0.48590964 1227 Q6P6C2-2;Q6P6C2;F5H6G2 ALKBH5 RNA demethylase ALKBH5 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 65.03 58.003 2 0.012883 4 41233 20150910_Q1_SA_NiHu_Masterprac_group10_B 80.688 35.32 12534000 697090 1709800 2203100 674410 1544000 5705800 4439 1227 4391 19684;19685;19686;19687;19688;19689 13091;13092;13093;13094 13094 4 LFSSQYGK Unmodified 928.46543 0.46543219 945 P49792;E9PGT0 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase no no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 79.126 71.615 2 0.014947 4 56345 20150910_Q1_SA_NiHu_Masterprac_group13_C 86.833 54.878 34679000 3883500 5714100 6981600 4032200 5969700 8097900 4440 945 4392 19690;19691;19692;19693;19694;19695 13095;13096;13097;13098 13096 4 LFSSSASSNEVKYEK Unmodified 1674.8101 0.81008055 1466 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 90.288 82.828 3 0.00151 3 63314 20150910_Q1_SA_NiHu_Masterprac_group13_C 68.168 45.617 5634200 0 1243200 1064400 420540 467850 2438200 4441 1466 4393 19696;19697;19698;19699;19700 13099;13100;13101 13099 2 LFTSDSSTTKENSK Unmodified 1543.7366 0.73658126 95 B4DL80;G5EA36;P30260;G3V1C4 CDC27 Cell division cycle protein 27 homolog yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 50.23 44.389 3 9.7201E-05 6 32016 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.747 89.747 12249000 1739200 1327800 2722300 1095700 2282300 3081700 4442 95 4394 19701;19702;19703;19704;19705;19706 13102;13103;13104;13105;13106;13107 13104 6 LGAGEGGEASVSPEK Unmodified 1386.6627 0.66268803 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 70.587 63.139 2 4.6978E-06 4 43962 20150910_Q1_SA_NiHu_Masterprac_group13_B 93.909 78.921 25041000 7795500 2242400 2234500 3062100 5743400 3963000 4443 383;1082 4395 19707;19708;19709;19710;19711;19712;19713 13108;13109;13110;13111 13108 4 LGAKGDFPTGK Unmodified 1089.5819 0.58185894 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 69.677 61.626 2 2.5691E-12 4 44456 20150910_Q1_SA_NiHu_Masterprac_group10_C 114.76 74.04 15171000 1368400 0 3251100 2831600 5924400 1796000 4444 1639 4396 19714;19715;19716;19717;19718 13112;13113;13114;13115 13115 4 LGAPAAGGEEEWGQQQR Unmodified 1782.8285 0.82852458 760 O94992 HEXIM1 Protein HEXIM1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 108.39 100.41 2 0.0024445 2 68396 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.495 53.582 8937300 0 1713200 1132300 982820 196530 4912400 4445 760 4397 19719;19720;19721;19722;19723 13116;13117 13116 2 LGAQLADLHLDNK Unmodified 1406.7518 0.75177781 1511 Q9HA64;I3L1I7;I3L139;F5H4E4;I3L2G3 FN3KRP Ketosamine-3-kinase yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 131.74 126.03 2;3 4.4455E-74 5 84299 20150910_Q1_SA_NiHu_Masterprac_group13_B 138.24 101.28 113500000 0 44913000 25020000 9674500 0 33893000 4446 1511 4398 19724;19725;19726;19727;19728 13118;13119;13120;13121;13122 13118 5 LGAQLADLHLDNKK Unmodified 1534.8467 0.84674083 1511 Q9HA64;I3L1I7;I3L139;F5H4E4;I3L2G3 FN3KRP Ketosamine-3-kinase yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 2 121.61 112.94 2;3 5.4694E-104 7 80443 20150910_Q1_SA_NiHu_Masterprac_group13_C 143.55 101.23 136410000 23160000 28681000 45833000 13527000 1179100 24030000 4447 1511 4399 19729;19730;19731;19732;19733;19734;19735;19736;19737 13123;13124;13125;13126;13127;13128;13129 13124 7 LGASNSPGQPNSVK Unmodified 1354.6841 0.68409218 942 P49756 RBM25 RNA-binding protein 25 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 56.503 50.144 2 6.0855E-05 5 41028 20150910_Q1_SA_NiHu_Masterprac_group13_C 91.712 56.657 15443000 2767300 1582400 2228500 1481300 3202700 4180400 4448 942 4400 19738;19739;19740;19741;19742;19743 13130;13131;13132;13133;13134 13131 5 LGASNSPGQPNSVKRK Unmodified 1638.8802 0.88016622 942 P49756 RBM25 RNA-binding protein 25 yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 3 2 37.972 33.212 3;4 0.0017424 5 22430 20150910_Q1_SA_NiHu_Masterprac_group13_B 59.709 44.945 23180000 3064000 3294400 3365800 3913700 4765800 4776200 4449 942 4401 19744;19745;19746;19747;19748;19749;19750;19751;19752;19753;19754;19755 13135;13136;13137;13138;13139 13135 5 LGAVPATSGPTTFK Unmodified 1345.7242 0.72416608 123 B4DSM5;G3XAG1;Q96ME7 ZNF512 Zinc finger protein 512 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 120.6 109.95 2 0.027147 1 75281 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.659 20.175 3947700 0 0 0 0 560300 3387400 4450 123 4402 19756;19757 13140 13140 0 LGAVPATSGPTTFKQQR Unmodified 1757.9424 0.94243213 123 B4DSM5;G3XAG1;Q96ME7 ZNF512 Zinc finger protein 512 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 104.2 94.207 3 0.0074263 3 64295 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.438 25.76 12370000 1447900 1563100 1427200 0 2907000 5025200 4451 123 4403 19758;19759;19760;19761;19762 13141;13142;13143 13141 3 LGDEDEEIDGDTNKYK Unmodified 1839.801 0.80103201 30 P09884;A6NMQ1 POLA1 DNA polymerase alpha catalytic subunit;DNA polymerase yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 89.475 82.522 3 0.0099045 2 56318 20150910_Q1_SA_NiHu_Masterprac_group10_B 45.54 34.101 3709500 0 885300 1115200 0 0 1709000 4452 30 4404 19763;19764;19765 13144;13145 13144 2 LGDPQNRIATK Unmodified 1211.6622 0.66223452 1037 Q03701;F5H3Y6 CEBPZ CCAAT/enhancer-binding protein zeta yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 2 2 57.392 50.198 2;3 2.3943E-07 2 35888 20150910_Q1_SA_NiHu_Masterprac_group15_B 108.35 62.584 7049100 0 0 1080800 522190 1908900 3537300 4453 1037 4405 19766;19767;19768;19769;19770;19771 13146;13147 13147 2 LGEASDSELADADK Unmodified 1419.6365 0.63653286 604 Q5SW79-2;Q5SW79-3;H0Y2V6;Q5SW79;F8W8A3 CEP170 Centrosomal protein of 170 kDa yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 89.025 80.089 2 0.00026007 2 61625 20150910_Q1_SA_NiHu_Masterprac_group13_C 88.561 80.22 4471500 0 1028800 801820 852430 1788500 0 4454 604 4406 19772;19773;19774;19775 13148;13149 13148 2 LGEENKGHQMLVK Unmodified 1481.766 0.76604767 1281 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 63.097 55.301 3 0.0022755 3 44620 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.216 35.166 7367600 0 0 0 0 1009900 6357600 4455 1281 4407 19776;19777 13150;13151;13152 13152 3 LGEGTYATVYKGR Unmodified 1413.7252 0.72522871 525 F5H6Z0;Q00537-2;Q00537 CDK17 Cyclin-dependent kinase 17 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 95.765 87.803 3 0.0059126 1 60176 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.157 45.526 5600300 413400 859780 1049300 486380 875420 1916100 4456 525 4408 19778;19779;19780;19781;19782;19783 13153 13153 1 LGEHNIDVLEGNEQFINAAK Unmodified 2210.0968 0.096760517 284 CON__P00761 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 1 135.05 125.12 2;3 0 12 86613 20150910_Q1_SA_NiHu_Masterprac_group13_B 285.96 260.55 13434000000 32547000 5492300000 224960000 6886100000 793610000 4565000 + 4457 284 4409 19784;19785;19786;19787;19788;19789;19790;19791;19792;19793;19794 13154;13155;13156;13157;13158;13159;13160;13161;13162;13163;13164;13165 13156 12 LGEHNIEVLEGNEQFINAAK Unmodified 2224.1124 0.11241058 296 H0Y8D1;Q8NHM4;P07478;P07477;CON__P07477;E7EQ64 PRSS1;TRY6;PRSS2 Putative trypsin-6;Trypsin-2;Trypsin-1;Alpha-trypsin chain 1;Alpha-trypsin chain 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 133.44 132.83 3 0 1 86419 20150910_Q1_SA_NiHu_Masterprac_group10_B 214.34 162.58 112330000 0 112330000 0 0 0 0 + 4458 296 4410 19795 13166 13166 0 LGELPEINGK Unmodified 1068.5815 0.58152458 1060 Q12800-3;Q12800;F8VWL0;F8VX55;Q12800-2;Q12800-4 TFCP2 Alpha-globin transcription factor CP2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 118.15 116.33 2 2.2826E-09 1 79076 20150910_Q1_SA_NiHu_Masterprac_group15_B 117.52 61.714 4867400 0 773930 0 742240 0 3351200 4459 1060 4411 19796;19797;19798 13167 13167 1 LGELPEINGKLVK Unmodified 1408.829 0.8289655 1060 Q12800-3;Q12800;F8VWL0;F8VX55;Q12800-2;Q12800-4 TFCP2 Alpha-globin transcription factor CP2 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 132.34 120.23 3 2.5906E-91 3 84906 20150910_Q1_SA_NiHu_Masterprac_group10_B 147.58 110.62 61712000 0 36933000 17433000 0 7345800 0 4460 1060 4412 19799;19800;19801 13168;13169;13170 13170 3 LGEQYSCYGDGGK Unmodified 1432.5929 0.59289391 1192 Q5T5X7 BEND3 BEN domain-containing protein 3 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 82.698 75.962 2 0.031181 1 52286 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.246 39.903 2806400 0 757550 0 0 732380 1316500 4461 1192 4413 19802;19803;19804 13171 13171 1 LGESLQSAER Unmodified 1088.5462 0.54620171 767 O95235;B4DL79 KIF20A Kinesin-like protein KIF20A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 74.554 67.275 2 0.0086058 1 46858 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.017 51.243 10531000 0 1656300 1217000 867330 2914200 3876200 4462 767 4414 19805;19806;19807;19808;19809 13172 13172 1 LGESQTLQQFSR Unmodified 1392.6997 0.69974224 21 Q13813-3;F8W7K3;Q13813;Q13813-2;A6NG51 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 112.12 109.39 2 0.025608 1 71859 20150910_Q1_SA_NiHu_Masterprac_group10_B 49.483 20.525 749760 0 535800 0 0 0 213960 4463 21 4415 19810;19811 13173 13173 1 LGETYKDHENIVIAK Unmodified 1728.9046 0.90464964 356 I3L2P8;F5H8J2;H7BZ94;E7EPA8;P07237;H0Y3Z3;B4DUA5 P4HB Protein disulfide-isomerase yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 99.597 91.919 3;4 2.0304E-08 8 62893 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.223 69.285 50377000 7096300 7730100 7468300 7127500 5977500 14977000 4464 356 4416 19812;19813;19814;19815;19816;19817;19818;19819;19820;19821;19822;19823;19824 13174;13175;13176;13177;13178;13179;13180;13181 13178 8 LGEYGFQNALIVR Unmodified 1478.7882 0.78816332 294 CON__P02769 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 136.89 129.05 2 8.2578E-24 2 83136 20150910_Q1_SA_NiHu_Masterprac_group10_C 113.24 96.577 18061000 12556000 0 0 5504600 0 0 + 4465 294 4417 19825;19826 13182;13183 13183 2 LGFKSPTSKDDK Unmodified 1321.6878 0.68778057 1222 Q6KC79-2;Q6KC79;Q6KC79-3 NIPBL Nipped-B-like protein yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 61.476 51.875 3 0.0091873 1 38165 20150910_Q1_SA_NiHu_Masterprac_group10_C 72.531 25.802 3892800 837440 876000 1308300 0 871040 0 4466 1222 4418 19827;19828;19829;19830 13184 13184 1 LGGANKEMTHLQK Unmodified 1425.7398 0.73983292 1110 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 57.173 50.876 3 0.0022757 2 36360 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.515 36.526 3905000 0 713030 779880 648350 652960 1110800 4467 1110 4419 19831;19832;19833;19834;19835 13185;13186 13186 1 LGGLVIEK Unmodified 827.51165 0.5116541 1351 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 114.65 101.73 2 0.022624 1 69351 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.732 31.78 6619500 590780 0 997310 0 1134900 3896500 4468 1351 4420 19836;19837;19838;19839 13187 13187 1 LGGPQASLSTK Unmodified 1057.5768 0.57677356 1172 Q4VXZ8;Q9NUI1;Q9NUI1-3 DECR2 Peroxisomal 2,4-dienoyl-CoA reductase yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 75.412 67.967 2 4.2916E-05 7 54359 20150910_Q1_SA_NiHu_Masterprac_group13_C 101.35 60.232 45580000 2360300 6927900 6395500 2292700 8580400 19024000 4469 1172 4421 19840;19841;19842;19843;19844;19845;19846 13188;13189;13190;13191;13192;13193;13194 13189 6 LGGTCVNVGCVPK Unmodified 1359.6639 0.66389078 780 P00390-5;P00390-4;P00390-2;P00390-3;P00390;H0YC68;H0YBD4 GSR Glutathione reductase, mitochondrial yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 2 1 1 1 1 111.47 102.99 2 0.0037272 2 67963 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.181 40.295 6465100 1226100 2341200 1097300 1058200 0 742370 4470 780 4422 19847;19848;19849;19850;19851;19852 13195;13196 13195 2 LGGTCVNVGCVPKK Unmodified 1487.7589 0.7588538 780 P00390-5;P00390-4;P00390-2;P00390-3;P00390;H0YC68;H0YBD4 GSR Glutathione reductase, mitochondrial yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 89.547 83.08 3 0.0025082 1 56563 20150910_Q1_SA_NiHu_Masterprac_group10_B 56.956 39.17 4201600 0 2113000 1494300 594350 0 0 4471 780 4423 19853;19854;19855 13197 13197 1 LGGVSSTEELDIR Unmodified 1374.6991 0.69907354 1204 Q5VTR2;C9JMW8;C9JWJ4;C9J0A5;C9JXC9 RNF20 E3 ubiquitin-protein ligase BRE1A yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 125.16 124.55 2 0.025869 1 79768 20150910_Q1_SA_NiHu_Masterprac_group10_B 46.069 18.971 362480 0 362480 0 0 0 0 4472 1204 4424 19856 13198 13198 1 LGHELQQAGLKTK Unmodified 1421.7991 0.79906235 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;Q9BTE9;H0YH75 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 70.32 63.161 3 0.011524 2 44073 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.199 32.257 5823100 0 1468300 697500 494360 888500 2274400 4473 1121 4425 19857;19858;19859;19860;19861 13199;13200 13199 2 LGHPDTLNQGEFKELVRK Unmodified 2080.1065 0.10653734 800 P06702 S100A9 Protein S100-A9 yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 129.93 111.94 4 0.018257 1 80596 20150910_Q1_SA_NiHu_Masterprac_group13_C 38.546 28.172 7018800 0 0 7018800 0 0 0 4474 800 4426 19862 13201 13201 1 LGHSFSLVGNK Unmodified 1157.6193 0.61930707 18 A6NEM2;P51610-2;P51610;P51610-3 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 102.02 94.854 2 0.0016364 1 64737 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.913 63.432 7782300 0 893730 0 0 1200400 5688200 4475 18 4427 19863;19864;19865 13202 13202 1 LGIKPESVQPHRPTTNPNTSK Unmodified 2300.2237 0.22369236 1152 Q16527;F8VQR7 CSRP2 Cysteine and glycine-rich protein 2 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 82.821 75.259 4;5 1.5558E-05 6 59214 20150910_Q1_SA_NiHu_Masterprac_group13_C 62.589 62.589 216050000 22675000 35895000 62960000 9318600 20345000 64857000 4476 1152 4428 19866;19867;19868;19869;19870;19871;19872;19873;19874;19875;19876;19877 13203;13204;13205;13206;13207;13208 13205 6 LGLAEPDMLRK Unmodified 1241.6802 0.68019277 1655 Q9Y5N6;H3BTQ7 ORC6 Origin recognition complex subunit 6 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 123.66 123.36 3 0.0097826 2 79080 20150910_Q1_SA_NiHu_Masterprac_group10_B 56.548 34.876 950650 0 502610 0 448050 0 0 4477 1655 4429 19878;19879 13209;13210 13210 2 LGLGEGAEEK Unmodified 1001.5029 0.50293991 271 C9JW69;P18754;P18754-2 RCC1 Regulator of chromosome condensation yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 73.072 65.728 2 5.0572E-09 6 51089 20150910_Q1_SA_NiHu_Masterprac_group15_C 115.7 64.172 10584000 1277900 1235400 1686800 951330 2322500 3110100 4478 271 4430 19880;19881;19882;19883;19884;19885 13211;13212;13213;13214;13215;13216 13214 6 LGLGLDDESNNQQAAATQSPGDSRR Unmodified 2599.2222 0.22224839 1053 Q09472 EP300 Histone acetyltransferase p300 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 111.83 105.28 3 0.0037358 2 71949 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.683 28.662 4224600 1397700 1104500 0 0 0 1722400 4479 1053 4431 19886;19887;19888 13217;13218 13217 2 LGLHVTPSNVDQVSTPPAAK Unmodified 2030.0797 0.07965389 1536 Q9NRL2-2;Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 129.53 128.92 3 8.8609E-07 1 82403 20150910_Q1_SA_NiHu_Masterprac_group10_B 86.575 69.49 14574000 0 14574000 0 0 0 0 4480 1536 4432 19889 13219 13219 1 LGLKPLEVNAIK Unmodified 1293.802 0.80202247 713 O43290;E9PQI8 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 132.68 127.71 3 0.014802 1 87683 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.258 18.587 7945300 0 0 0 0 0 7945300 4481 713 4433 19890 13220 13220 1 LGLKPLEVNAIKK Unmodified 1421.897 0.89698548 713 O43290;E9PQI8 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 130.38 113.54 3 3.7998E-60 2 81172 20150910_Q1_SA_NiHu_Masterprac_group13_C 136.27 119.61 15053000 9542300 0 5510800 0 0 0 4482 713 4434 19891;19892 13221;13222 13221 2 LGLNLPAGR Unmodified 909.5396 0.53960019 1257 Q7Z6R9 TFAP2D Transcription factor AP-2-delta yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 128.15 117.92 2 0.00029178 3 76933 20150910_Q1_SA_NiHu_Masterprac_group10_C 111.74 65.282 14134000 11740000 0 0 0 0 2393200 4483 1257 4435 19893;19894 13223;13224;13225 13225 3 LGLPPLTPEQQEALQKAK Unmodified 1960.0993 0.099326699 458 E9PL19;E9PMU7;E9PN18;E9PQ56;H0YEM1;Q9UHX1-4;Q9UHX1-6;Q9UHX1-3;Q9UHX1-5;Q9UHX1-2;Q9UHX1 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 133 123.89 3 0.00022834 3 85818 20150910_Q1_SA_NiHu_Masterprac_group10_B 82.774 61.466 69276000 0 24096000 23572000 16788000 4820800 0 4484 458 4436 19895;19896;19897;19898 13226;13227;13228 13228 3 LGLSVFTHHRVESGGPGTSAASAR Unmodified 2393.22 0.22000397 1449 Q9BU76-4;Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 118.88 111.42 4 0.0029793 2 79845 20150910_Q1_SA_NiHu_Masterprac_group13_C 49.076 34.556 44778000 0 0 11250000 8170000 0 25358000 4485 1449 4437 19899;19900;19901 13229;13230 13229 2 LGLVIPSSGSGSGNQSIDRSGPLVK Unmodified 2424.2973 0.29725124 1607 Q9ULJ3-2;Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 133.05 132.44 3 0.0061967 1 86032 20150910_Q1_SA_NiHu_Masterprac_group10_B 38.592 19.299 14391000 0 14391000 0 0 0 0 4486 1607 4438 19902 13231 13231 1 LGMSADPDNEDATDK Unmodified 1577.6515 0.651531 97 B4DLG2;O75152;E9PQ61;E9PBY7 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 81.763 74.618 2 0.031937 1 56606 20150910_Q1_SA_NiHu_Masterprac_group15_C 39.531 21.118 3678700 418260 1235100 0 0 950780 1074600 4487 97 4439 19903;19904;19905;19906 13232 13232 1 LGMSADPDNEDATDKVNK Unmodified 1918.8578 0.85783538 97 B4DLG2;O75152;E9PQ61;E9PBY7 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 85.827 78.407 3 0.0007077 6 53972 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.719 70.167 29569000 0 4787400 4737200 2969500 8114800 8960000 4488 97 4440 19907;19908;19909;19910;19911 13233;13234;13235;13236;13237;13238 13235 5 LGNFFSPK Unmodified 908.4756 0.47560295 929 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 127.06 119.36 2 0.0064013 4 82869 20150910_Q1_SA_NiHu_Masterprac_group13_C 107.01 42.44 42999000 0 3555800 12983000 3420200 6336000 16704000 4489 929 4441 19912;19913;19914;19915;19916;19917 13239;13240;13241;13242 13240 4 LGNKSPNGISDYPK Unmodified 1488.7573 0.75725712 115 B4DQ42;Q9HC62;C9IYB7 SENP2 Sentrin-specific protease 2 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 78.679 69.505 3 0.022386 1 53754 20150910_Q1_SA_NiHu_Masterprac_group15_C 44.436 17.904 5187300 0 207400 1385900 0 691690 2902400 4490 115 4442 19918;19919;19920;19921 13243 13243 1 LGNNCVFAPADVTSEK Unmodified 1720.809 0.80903469 1181 Q5H928;Q99714-2;Q99714 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 131.47 121.97 2 9.8339E-12 7 86310 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.238 83.44 42893000 6349900 4131600 4842400 3400800 3717800 20451000 4491 1181 4443 19922;19923;19924;19925;19926;19927 13244;13245;13246;13247;13248;13249;13250 13247 6 LGNSCEFR Unmodified 981.43381 0.43381449 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 63.659 56.941 2 4.336E-05 4 45986 20150910_Q1_SA_NiHu_Masterprac_group13_C 116.37 83.479 82461000 0 17329000 19806000 4041000 15989000 25296000 4492 352;968 4444 19928;19929;19930;19931;19932 13251;13252;13253;13254 13251 4 LGNSCEFRLLSK Unmodified 1422.7289 0.72893388 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 128.29 118.79 2;3 0 12 77188 20150910_Q1_SA_NiHu_Masterprac_group10_C 234.87 169.92 477110000 156190000 37905000 158830000 30016000 33470000 60699000 4493 352;968 4445 19933;19934;19935;19936;19937;19938;19939;19940;19941;19942;19943;19944 13255;13256;13257;13258;13259;13260;13261;13262;13263;13264;13265;13266 13266 12 LGNTTVICGVK Unmodified 1160.6223 0.62234354 1184 Q5JXM0;Q96B26 DKFZp564C0482;EXOSC8 Exosome complex component RRP43 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 95.593 93.236 2 2.3842E-05 2 63681 20150910_Q1_SA_NiHu_Masterprac_group15_B 103.91 75.705 3131800 0 0 0 0 0 3131800 4494 1184 4446 19945 13267;13268 13267 2 LGPPPSHASADATR Unmodified 1375.6844 0.68442653 1161 Q2TAK8;Q2TAK8-2 MUM1 PWWP domain-containing protein MUM1 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 58.27 50.77 3 0.0015483 2 36197 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.784 51.351 7455700 986160 2678700 1447600 685700 1657400 0 4495 1161 4447 19946;19947;19948;19949;19950 13269;13270 13270 2 LGPSTGSTAETQCRNWLK Unmodified 2004.9687 0.96872323 1188 Q5T200-2;Q5T200;Q5T9K0 ZC3H13 Zinc finger CCCH domain-containing protein 13 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 122.08 112.06 3 0.021774 1 76238 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.261 30.531 3459000 717320 0 0 0 0 2741600 4496 1188 4448 19951;19952 13271 13271 1 LGQSIESSYSSIQK Unmodified 1525.7624 0.76240208 416 Q9UJX5-2;Q9UJX5;E9PCR4 ANAPC4 Anaphase-promoting complex subunit 4 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 115.83 105.43 2 0.027264 1 72246 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.004 24.893 2391700 0 0 0 0 1175100 1216600 4497 416 4449 19953;19954 13272 13272 0 LGRQGNLSSSGNQEGSQK Unmodified 1845.8929 0.89291575 306 Q5D862;CON__Q5D862 FLG2 Filaggrin-2 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 38.157 34.614 3 0.0036526 1 27911 20150910_Q1_SA_NiHu_Masterprac_group13_C 49.395 39.705 621290 0 0 297120 172560 0 151620 + 4498 306 4450 19955;19956;19957 13273 13273 1 LGRTPAEVVSTCDITFACVSDPKAAK Unmodified 2792.3837 0.38369976 1168;1169 Q49A26-2;Q49A26;Q49A26-3;Q49A26-4;Q49A26-5 GLYR1 Putative oxidoreductase GLYR1 no no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 132.76 114.92 4 1.021E-16 1 81795 20150910_Q1_SA_NiHu_Masterprac_group15_C 82.627 69.614 7255700 0 0 0 0 7255700 0 4499 1168;1169 4451 19958 13274 13274 1 LGRYPPWPGKIVNPPK Unmodified 1818.0305 0.030459273 1168;1169 Q49A26-2;Q49A26;Q49A26-3;Q49A26-5 GLYR1 Putative oxidoreductase GLYR1 no no 0 0 2 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 131.8 121.48 4 6.7661E-07 2 86363 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.759 73.873 18490000 4852900 0 0 0 0 13637000 4500 1168;1169 4452 19959;19960 13275;13276 13275 2 LGSASQAGPPGSSRK Unmodified 1398.7215 0.72154031 1572 Q9P0K8-2;Q9P0K8 FOXJ2 Forkhead box protein J2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 38.266 33.528 3 0.00025146 6 26994 20150910_Q1_SA_NiHu_Masterprac_group13_C 83.869 54.566 5471400 516100 1315200 1786800 429050 269370 1154800 4501 1572 4453 19961;19962;19963;19964;19965;19966 13277;13278;13279;13280;13281;13282 13277 6 LGSGSNGLLR Unmodified 972.53524 0.53524309 115 B4DQ42;Q9HC62;E7ENF4;H7C1A0 SENP2 Sentrin-specific protease 2 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 90.05 80.836 2 0.0012985 4 60526 20150910_Q1_SA_NiHu_Masterprac_group15_C 104.22 53.155 11793000 745470 1213600 1235500 0 3200700 5397700 4502 115 4454 19967;19968;19969;19970;19971 13283;13284;13285;13286 13284 4 LGTPQQIAIAR Unmodified 1166.6772 0.6771563 359 Q7L576;E7EQ04;E7EVJ5;Q96F07-2;E7EVF4;Q7L576-3;Q7L576-2;F5H583;Q96F07;E7EWA4;E7EW33;H7C229;H0YL50 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 2 1 119.52 107.45 2 0.0051126 3 70677 20150910_Q1_SA_NiHu_Masterprac_group10_B 73.666 52.832 7817900 649080 1296900 505050 0 1554600 3812300 4503 359 4455 19972;19973;19974;19975;19976;19977 13287;13288;13289 13289 3 LGVAESWTR Unmodified 1017.5243 0.52434406 1273 Q86Y79;C9J7Z1 PTRH1 Probable peptidyl-tRNA hydrolase yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 119.05 106.12 2 0.018678 1 72603 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.552 35.373 5573100 0 0 1165400 0 1178100 3229500 4504 1273 4456 19978;19979;19980 13290 13290 1 LGVDISATK Unmodified 902.5073 0.50729701 1543 Q9NSD9;F5H6Y1 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 99.553 91.435 2 0.014363 1 61594 20150910_Q1_SA_NiHu_Masterprac_group10_B 78.098 38.845 9332300 961000 2438100 1119700 501810 2002500 2309200 4505 1543 4457 19981;19982;19983;19984;19985;19986 13291 13291 1 LGVLHPDVITK Unmodified 1190.7023 0.70230842 1543 Q9NSD9;F5H6Y1 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 116.14 111.78 2 0.0083625 1 76215 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.214 38.638 2318700 0 0 0 0 0 2318700 4506 1543 4458 19987 13292 13292 1 LGVLSSSQNGPPK Unmodified 1282.6881 0.68811492 398 E7EX82;Q8NDX5-2;Q8NDX5;Q8NDX5-7;C9J6H0;C9JYH7;Q8NDX5-3 PHC3 Polyhomeotic-like protein 3 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 95.213 87.567 2 0.0018379 3 64690 20150910_Q1_SA_NiHu_Masterprac_group15_C 85.271 56.91 4667200 785840 944320 0 0 993790 1943200 4507 398 4459 19988;19989;19990;19991 13293;13294;13295 13294 3 LHDAFFK Unmodified 876.44939 0.4493882 1083 Q13435;E9PPJ0 SF3B2 Splicing factor 3B subunit 2 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 93.175 84.003 2 0.039183 1 57697 20150910_Q1_SA_NiHu_Masterprac_group10_C 83.614 59.642 1278500 1278500 0 0 0 0 0 4508 1083 4460 19992 13296 13296 1 LHDLYWQAMK Unmodified 1303.6383 0.63832796 682 I3L1L3;Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.18 126.22 3 0.010525 1 86038 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.056 70.056 4646900 0 0 0 0 0 4646900 4509 682 4461 19993 13297 13297 1 LHDSSGSQVGTGFK Unmodified 1418.679 0.6790068 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 62.857 55.95 2;3 2.2373E-05 9 41441 20150910_Q1_SA_NiHu_Masterprac_group10_C 93.649 77.708 33974000 5185800 4553000 2533800 1925400 7553100 12223000 4510 945 4462 19994;19995;19996;19997;19998;19999;20000;20001;20002;20003;20004;20005;20006 13298;13299;13300;13301;13302;13303;13304;13305;13306 13305 9 LHDSSGSQVGTGFKSNFSEK Unmodified 2110.992 0.99196109 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 1 93.59 85.209 3;4 0.00011156 6 58009 20150910_Q1_SA_NiHu_Masterprac_group13_B 69.975 51.885 20542000 4806100 4146400 3622200 2593300 3365000 2008900 4511 945 4463 20007;20008;20009;20010;20011;20012;20013;20014;20015;20016;20017 13307;13308;13309;13310;13311;13312 13308 6 LHGKPIRITLSK Unmodified 1361.8507 0.85070399 882 P26599;P26599-2;P26599-3;A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 77.409 70.805 3 5.6918E-05 5 48949 20150910_Q1_SA_NiHu_Masterprac_group15_B 100.69 69.09 88587000 3730000 5220400 16801000 7979700 12050000 42806000 4512 882 4464 20018;20019;20020;20021;20022;20023;20024 13313;13314;13315;13316;13317 13314 5 LHGVNINVEASK Unmodified 1279.6884 0.68844927 1457 Q9BWF3;E9PB51;Q9BQ04;E7EQS3;Q9BWF3-3;D6R9K7;Q9BWF3-2;E9PLB0;E9PM61 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 91.414 89.357 3 0.0028879 1 61240 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.864 39.3 1889500 0 0 0 0 0 1889500 4513 1457 4465 20025 13318 13318 1 LHGVNINVEASKNK Unmodified 1521.8263 0.82633974 1457 Q9BWF3;E9PB51;Q9BQ04;E7EQS3;Q9BWF3-3;D6R9K7;Q9BWF3-2;E9PLB0;E9PM61 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 80.493 74.727 3 9.7201E-05 2 56837 20150910_Q1_SA_NiHu_Masterprac_group15_C 89.747 61.039 10024000 0 0 0 803840 3046600 6174000 4514 1457 4466 20026;20027;20028 13319;13320 13320 2 LHGVNINVEASKNKSK Unmodified 1736.9533 0.95333116 1457 Q9BWF3;E9PB51;Q9BQ04;E7EQS3;Q9BWF3-3;D6R9K7;Q9BWF3-2;E9PLB0;E9PM61 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 68.821 62.03 3;4 2.9817E-18 10 43576 20150910_Q1_SA_NiHu_Masterprac_group13_B 104.09 92.992 42164000 7680200 8201100 10787000 4840400 2433600 8221500 4515 1457 4467 20029;20030;20031;20032;20033;20034;20035;20036;20037;20038;20039;20040;20041 13321;13322;13323;13324;13325;13326;13327;13328;13329;13330 13321 9 LHGVPRPLAMK Unmodified 1217.7067 0.70668229 1363 Q92908-2;Q92908 GATA6 Transcription factor GATA-6 no no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 94.013 86.151 3 0.012874 2 65767 20150910_Q1_SA_NiHu_Masterprac_group13_C 61.78 61.78 9729300 1013800 1100700 2097100 1016100 2006600 2495100 4516 1363 4468 20042;20043;20044;20045;20046;20047 13331;13332 13331 2 LHHQNQQQIQQQQQQLQR Unmodified 2310.169 0.16897145 1418 Q96RN5-3;Q96RN5-2;Q96RN5;B4DM43;H7C308;F5GZU5;G3V1P5 MED15 Mediator of RNA polymerase II transcription subunit 15 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 2 55.481 50.256 3;4 0.00022252 4 35732 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.529 65.384 4800800 520390 989610 0 0 361120 2929700 4517 1418 4469 20048;20049;20050;20051;20052 13333;13334;13335;13336 13334 4 LHHYSDF Unmodified 917.40317 0.40316629 1654 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 66.644 57.645 2 0.0096195 1 47004 20150910_Q1_SA_NiHu_Masterprac_group13_C 99.511 99.511 1416200 0 441580 974580 0 0 0 4518 1654 4470 20053;20054 13337 13337 1 LHIFNAK Unmodified 841.48102 0.48102268 152 B4E0G4;Q8IWS0;E9PC97;Q5JRC6;Q8IWS0-2 PHF6 PHD finger protein 6 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 87.826 76.396 2 0.0075268 1 52744 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.071 42.546 4219300 0 0 1700200 0 834030 1685100 4519 152 4471 20055;20056;20057 13338 13338 1 LHIFSGAHGPEK Unmodified 1291.6673 0.6673199 1109 Q14676;Q14676-2;E9PGY5;Q14676-3;F8VV34;E7EVA7;Q14676-4;A2AB06;A2AB07;A2AB05;F8WCC2;E7ER07;E7ENQ0;A1Z5I7 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 83.531 76.111 3 0.0028879 4 52413 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.864 29.805 7462700 0 1379500 1145500 469430 1700600 2767700 4520 1109 4472 20058;20059;20060;20061;20062 13339;13340;13341;13342 13341 4 LHISHDNIGGPEGK Unmodified 1472.7372 0.73719038 857 P20719 HOXA5 Homeobox protein Hox-A5 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 73.432 66.193 3 0.030705 1 46168 20150910_Q1_SA_NiHu_Masterprac_group10_B 39.961 16.145 9233300 0 1777300 2504100 704530 988550 3258800 4521 857 4473 20063;20064;20065;20066;20067 13343 13343 1 LHISPSNMTNQNTNEYLEK Unmodified 2232.0481 0.048095765 1086 Q13547;F5GXM1 HDAC1 Histone deacetylase 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 129.84 124.87 3 0.0009843 1 84681 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.182 42.952 7869800 0 0 0 0 0 7869800 4522 1086 4474 20068 13344 13344 1 LHLVDLAGSER Unmodified 1208.6513 0.65133548 768 O95239;O95239-2;Q2VIQ3;Q5JRK0;E9PG57;Q05CT3;E2QRG3;H0Y718;Q9Y496;F5H1C2;E9PES4;F6VGH2;Q6ZMV9-3;E7EUN7;Q6ZMV9 KIF4A;KIF4B;KIF6;KIF3A Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B;Kinesin-like protein KIF3A;Kinesin-like protein KIF6 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 119.59 116.85 2 0.0041726 2 79612 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.342 55.655 3474300 0 1292900 0 0 0 2181400 4523 768 4475 20069;20070 13345;13346 13345 2 LHLVDLAGSERQK Unmodified 1464.8049 0.80487601 768 O95239;O95239-2;Q2VIQ3 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 108.02 98.726 3 5.985E-25 10 67605 20150910_Q1_SA_NiHu_Masterprac_group15_B 118.61 89.057 25615000 7421900 3002300 6106100 1430200 2342200 5311900 4524 768 4476 20071;20072;20073;20074;20075;20076;20077 13347;13348;13349;13350;13351;13352;13353;13354;13355;13356 13351 10 LHNAIEGGTQLSR Unmodified 1394.7266 0.72662569 733 O60832;O60832-2;H7BZF2;H7C0M1;C9IYT0 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 78.5 70.011 3 0.0075253 2 54097 20150910_Q1_SA_NiHu_Masterprac_group15_C 56.569 38.496 2056800 676360 0 0 0 658540 721900 4525 733 4477 20078;20079;20080 13357;13358 13358 2 LHNELQSGSLR Unmodified 1252.6524 0.65239812 414 Q5JTH9-2;E9PCK7;Q5JTH9 RRP12 RRP12-like protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 75.617 64.655 3 0.014906 1 45184 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.225 44.217 2473500 0 0 258190 0 882640 1332700 4526 414 4478 20081;20082;20083 13359 13359 1 LHNELQSGSLRLGK Unmodified 1550.8529 0.85288884 414 Q5JTH9-2;E9PCK7;Q5JTH9 RRP12 RRP12-like protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 99.331 91.63 3 0.0011335 1 62700 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.372 67.593 12383000 0 2381200 802680 1319800 2412000 5467200 4527 414 4479 20084;20085;20086;20087;20088 13360 13360 1 LHNVNRPLTMK Unmodified 1321.7289 0.7288743 869 P23769;P23769-2 GATA2 Endothelial transcription factor GATA-2 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 63.612 56.833 3 0.0048197 3 46556 20150910_Q1_SA_NiHu_Masterprac_group13_C 75.509 51.233 7590200 0 818900 1056800 582100 1832200 3300200 4528 869 4480 20089;20090;20091;20092;20093 13361;13362;13363 13361 3 LHPDKNPNNPNAHGDFLK Unmodified 2026.9973 0.99732124 1287 Q8IXB1;Q8IXB1-2;F8W884;Q3B7W8;E7EP04;Q71S60 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 74.4 66.915 3;4 0.00011814 13 53949 20150910_Q1_SA_NiHu_Masterprac_group13_C 83.252 83.252 620940000 41342000 124780000 86693000 67823000 130520000 169790000 4529 1287 4481 20094;20095;20096;20097;20098;20099;20100;20101;20102;20103;20104;20105;20106 13364;13365;13366;13367;13368;13369;13370;13371;13372;13373;13374;13375;13376 13369 13 LHPDKNPNNPNAHGDFLKINR Unmodified 2410.2254 0.2254237 1287 Q8IXB1;Q8IXB1-2;F8W884;Q3B7W8;E7EP04;Q71S60 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 2 2 2 92.506 84.836 4;5 0.027804 3 58023 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.066 39.113 18669000 0 0 8057200 4322700 2899600 3389400 4530 1287 4482 20107;20108;20109;20110;20111;20112;20113 13377;13378;13379 13378 3 LHPEMSNLDLTK Unmodified 1396.7021 0.70205043 455 E9PKP7;P17480-2;P17480;E9PMM2 UBTF Nucleolar transcription factor 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 120.89 111.32 3 8.6541E-19 4 79997 20150910_Q1_SA_NiHu_Masterprac_group13_C 117.95 82.407 27071000 7217200 3308900 3877800 2510100 746850 9409900 4531 455 4483 20114;20115;20116;20117;20118;20119 13380;13381;13382;13383 13380 3 LHQLAMQQSHFPMTHGNTGFSGIESSSPEVK Unmodified 3381.587 0.58704403 548 F8VZX2;Q15366-4;Q15366-5;Q15366-3;Q15366;Q15366-2;H3BRU6;B4DRD7;F8VRG9;F8VWQ4;F8VRH0 PCBP2 Poly(rC)-binding protein 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 2 131.69 126.73 4;5 3.2184E-28 2 86595 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.731 59.973 133130000 0 0 0 0 0 133130000 4532 548 4484 20120;20121 13384;13385 13385 2 LHQTIYNQACK Unmodified 1374.6714 0.671419 1393 Q96HW7;Q96HW7-2;Q96HW7-3 INTS4 Integrator complex subunit 4 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 61.752 53.76 3 6.92E-05 1 38403 20150910_Q1_SA_NiHu_Masterprac_group15_B 100.69 66.926 7287600 430600 459410 446990 0 1779600 4171000 4533 1393 4485 20122;20123;20124;20125;20126 13386 13386 1 LHRGAPVNISSSDLTGRQDTSR Unmodified 2366.2051 0.20508219 932 P48730-2;B4DIJ9;P48730;Q59FJ7;H7BYT1 CSNK1D Casein kinase I isoform delta yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 95.977 88.27 4 0.0097644 1 60534 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.349 39.349 8699200 914930 1733700 1901000 0 0 4149500 4534 932 4486 20127;20128;20129;20130 13387 13387 1 LHTGEKPYECK Unmodified 1360.6445 0.64453555 102 B4DM57;Q9Y2G7;H7BYP6;H7BXW0;Q8TAF7-2;Q8N141;F5H4L8;Q9HCL3;H7BYI3;Q8TAF7;P17039;P17039-2 ZFP30;ZNF461;ZFP82;ZFP14;ZNF30 Zinc finger protein 30 homolog;Zinc finger protein 461;Zinc finger protein 82 homolog;Zinc finger protein 14 homolog;Zinc finger protein 30 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 34.99 31.163 3 0.013248 1 21281 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.344 10.058 1986500 0 673160 1040600 272670 0 0 4535 102 4487 20131;20132;20133 13388 13388 1 LHTGEKPYQCNECGK Unmodified 1819.7982 0.79815243 1396 Q96IR2 ZNF845 Zinc finger protein 845 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 2 2 1 1 2 1 41.93 36.424 3;4 0.0029678 2 25628 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.268 12.443 7545100 1624200 955500 579960 467990 2459000 1458400 4536 1396 4488 20134;20135;20136;20137;20138;20139;20140;20141;20142 13389;13390 13389 2 LHVGNISPTCTNK Unmodified 1439.7191 0.71909747 1457 Q9BWF3;E9PB51;E7EQS3;Q9BWF3-3;D6R9K7;Q9BWF3-2 RBM4 RNA-binding protein 4 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 2 2 86.094 78.346 2;3 0.0013247 11 54095 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.641 47.625 63581000 6341500 9346200 10958000 3977300 6605900 26352000 4537 1457 4489 20143;20144;20145;20146;20147;20148;20149;20150;20151;20152;20153;20154;20155;20156 13391;13392;13393;13394;13395;13396;13397;13398;13399;13400;13401 13395 11 LHVSAVPESLPCR Unmodified 1463.7555 0.75548298 1080 Q13415 ORC1 Origin recognition complex subunit 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 115.66 112.37 3 0.012713 3 73355 20150910_Q1_SA_NiHu_Masterprac_group10_B 51.463 29.142 2796000 0 1243900 0 0 0 1552200 4538 1080 4490 20157;20158 13402;13403;13404 13404 3 LIAEQTLQENLIEKGSNLHEK Unmodified 2406.2755 0.27545316 1201 Q5UIP0-2;Q5UIP0 RIF1 Telomere-associated protein RIF1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 132.44 120.32 3;4 3.5829E-05 2 85291 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.585 48.797 50443000 0 12457000 36103000 0 1882100 0 4539 1201 4491 20159;20160;20161 13405;13406 13406 2 LIAHAGSLLNLAK Unmodified 1319.7925 0.79252041 1640 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 132.73 123.62 3 8.5006E-61 3 81862 20150910_Q1_SA_NiHu_Masterprac_group15_C 136.38 91.529 17566000 0 5929000 3124500 2919900 5592500 0 4540 1640 4492 20162;20163;20164;20165 13407;13408;13409 13408 3 LIAMKTEK Oxidation (M) 948.5314 0.53140327 394 E7EWM1;Q15596 NCOA2 Nuclear receptor coactivator 2 yes no 0 1 1 By MS/MS By matching By matching By matching By matching By matching 1 62.741 55.072 2 0.03957 1 40705 20150910_Q1_SA_NiHu_Masterprac_group10_C 58.604 9.1629 396080 396080 0 0 0 0 0 4541 394 4493 20166 13410 13410 44 0 LIASVAGSVERVNK Unmodified 1441.8253 0.8252771 10 A3KFL1;A3KFL4;B4DKK6;A3KFL5;A3KFL2;Q13868 EXOSC2 Exosome complex component RRP4 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 1 2 2 111.46 101.45 2;3 0.0011271 5 74150 20150910_Q1_SA_NiHu_Masterprac_group13_C 77.204 41.547 23589000 4004500 2372700 4660100 0 0 12551000 4542 10 4494 20167;20168;20169;20170;20171;20172;20173 13411;13412;13413;13414;13415 13411 5 LIDIVSSQK Unmodified 1001.5757 0.57571092 358 O14757-2;F5H7S4;O14757;E7EPP6 CHEK1 Serine/threonine-protein kinase Chk1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 110.78 100.48 2 0.032422 1 68342 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.426 30.049 9492300 554900 0 1351400 667950 873510 6044500 4543 358 4495 20174;20175;20176;20177;20178 13416 13416 1 LIEDSTLSK Unmodified 1004.539 0.53899107 180 B7WPF4;Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 24 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 72.749 71.494 2 0.013144 1 49626 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.231 20.881 1647600 0 0 0 0 0 1647600 4544 180 4496 20179 13417 13417 1 LIEGLSHEVIVSAACGR Unmodified 1809.9407 0.94071757 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 2 132.62 132.01 2;3 3.6974E-155 2 85552 20150910_Q1_SA_NiHu_Masterprac_group10_B 149.97 119.01 93493000 0 93493000 0 0 0 0 4545 1575 4497 20180;20181 13418;13419 13419 2 LIEQYALR Unmodified 1004.5655 0.56548059 1546 Q9NUQ3;Q9NUQ3-2 TXLNG Gamma-taxilin yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 113.04 106.89 2 0.014193 1 73162 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.296 2.4628 3648800 887210 0 0 484670 0 2276900 4546 1546 4498 20182;20183;20184 13420 13420 1 LIEQYELR Unmodified 1062.571 0.5709599 907 P40222 TXLNA Alpha-taxilin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 2 116.65 107.17 2 0.0036054 5 77526 20150910_Q1_SA_NiHu_Masterprac_group13_C 109.71 31.982 18460000 1584700 1417100 1460000 996220 4921100 8080500 4547 907 4499 20185;20186;20187;20188;20189;20190;20191;20192 13421;13422;13423;13424;13425 13421 5 LIEVDDER Unmodified 987.48729 0.48728985 5 A2A3R7;P62753 RPS6 40S ribosomal protein S6 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 80.802 73.274 2 0.022624 3 50962 20150910_Q1_SA_NiHu_Masterprac_group10_C 77.732 31.603 21485000 2047400 2930200 2677200 2807600 5276100 5746700 4548 5 4500 20193;20194;20195;20196;20197;20198 13426;13427;13428 13428 3 LIGLMNNEAAQESTR Unmodified 1645.8094 0.80936904 1271 Q86Y07-4;Q86Y07-3;Q86Y07 VRK2 Serine/threonine-protein kinase VRK2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 126.66 124.18 2 0.0002532 2 84169 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.548 66.705 4308400 0 0 0 412940 0 3895400 4549 1271 4501 20199;20200 13429;13430 13430 2 LIHPDEDISLEER Unmodified 1564.7733 0.77330111 40 A8MTG3;O43670-2;O43670;E1P660;H0Y3M2;O43670-3 ZNF207 Zinc finger protein 207 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 124.67 115.19 2;3 7.636E-47 9 81153 20150910_Q1_SA_NiHu_Masterprac_group13_C 128.68 101.25 104520000 28952000 14132000 23637000 5434200 6472500 25887000 4550 40 4502 20201;20202;20203;20204;20205;20206;20207;20208;20209;20210;20211;20212 13431;13432;13433;13434;13435;13436;13437;13438;13439 13433 9 LIHPDEDISLEERR Unmodified 1720.8744 0.87441214 40 A8MTG3;O43670-2;O43670;E1P660;H0Y3M2;O43670-3 ZNF207 Zinc finger protein 207 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 112.92 103.82 3;4 0.00060359 9 69669 20150910_Q1_SA_NiHu_Masterprac_group10_C 74.611 61.51 115240000 9978000 13420000 12193000 10780000 20837000 48031000 4551 40 4503 20213;20214;20215;20216;20217;20218;20219;20220;20221;20222;20223;20224 13440;13441;13442;13443;13444;13445;13446;13447;13448 13448 9 LIIESPSNTSSTEPA Unmodified 1544.757 0.75698235 904 P38432 COIL Coilin yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 132.04 116.35 2 0.029852 1 77738 20150910_Q1_SA_NiHu_Masterprac_group10_C 39.961 19.855 5512900 5512900 0 0 0 0 0 4552 904 4504 20225 13449 13449 1 LIKGIHQSTIDLK Unmodified 1464.8664 0.86641364 1105 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 97.36 94.802 3 0.032297 1 64763 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.879 34.562 982120 0 0 0 0 0 982120 4553 1105 4505 20226 13450 13450 0 LIKNNASTDYDLSDK Unmodified 1695.8315 0.83154427 905 P39023;G5E9G0;B5MCW2 RPL3 60S ribosomal protein L3 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 89.356 80.585 3 0.0024826 2 55638 20150910_Q1_SA_NiHu_Masterprac_group10_C 60.968 38.417 692630 692630 0 0 0 0 0 4554 905 4506 20227 13451;13452 13451 2 LILCCNSTSK Unmodified 1194.5737 0.57367879 270 C9JU95;P40938 RFC3 Replication factor C subunit 3 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 83.07 75.492 2 0.01713 3 57114 20150910_Q1_SA_NiHu_Masterprac_group15_C 66.056 37.851 19901000 1237100 1712300 1364100 1282300 2666300 11639000 4555 270 4507 20228;20229;20230;20231;20232;20233 13453;13454;13455 13454 3 LINRNTTIPTK Unmodified 1269.7405 0.74048484 187 B7Z4V2;P38646;F5H3L8 HSPA9 Stress-70 protein, mitochondrial yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 75.26 66.367 3 0.018355 4 51962 20150910_Q1_SA_NiHu_Masterprac_group15_C 57.149 23.771 7809800 691060 1661200 966690 0 2181800 2309000 4556 187 4508 20234;20235;20236;20237;20238 13456;13457;13458;13459 13458 4 LIPAPRGTGIVSAPVPK Unmodified 1672.0036 0.0035758205 839 P15880;H0YEN5;E9PQD7;E9PMM9;I3L404;E9PM36 RPS2 40S ribosomal protein S2 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 133.14 116.38 3 0.024804 1 77711 20150910_Q1_SA_NiHu_Masterprac_group10_C 38.948 24.157 68728000 66453000 0 0 0 2275500 0 4557 839 4509 20239;20240 13460 13460 1 LIQDQQEQIQHLK Unmodified 1619.8631 0.86311917 1362 Q92878-2;Q92878;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 4 2 98.775 89.515 2;3 1.8813E-46 14 65724 20150910_Q1_SA_NiHu_Masterprac_group15_C 125.36 74.224 110150000 24623000 12586000 18880000 11923000 12734000 29408000 4558 1362 4510 20241;20242;20243;20244;20245;20246;20247;20248;20249;20250;20251;20252;20253;20254;20255 13461;13462;13463;13464;13465;13466;13467;13468;13469;13470;13471;13472;13473;13474 13468 14 LIQIQDNGTGIRK Unmodified 1454.8205 0.82052608 614 H0Y818;P40692;F5H745;E9PEB4 MLH1 DNA mismatch repair protein Mlh1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 99.368 91.547 3 0.0010284 2 62533 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.85 51.143 4475100 298440 611870 0 0 1134500 2430300 4559 614 4511 20256;20257;20258;20259 13475;13476 13475 2 LIQQLRQQSAQSQVSTTAENK Unmodified 2357.2299 0.22989995 1477 Q9H0A0;E7ESU4;E9PMN9 NAT10 N-acetyltransferase 10 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 93.559 88.879 3 1.502E-22 2 60957 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.234 78.67 5791400 1278700 1455300 0 0 0 3057500 4560 1477 4512 20260;20261;20262 13477;13478 13477 2 LIQQQLEK Unmodified 998.57605 0.57604528 672 H7C4H2;Q9Y5M8 SRPRB Signal recognition particle receptor subunit beta yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 71.37 65.775 2 1.0915E-09 4 46054 20150910_Q1_SA_NiHu_Masterprac_group10_B 123.98 30.555 5221200 613160 1186500 0 870530 1094200 1456800 4561 672 4513 20263;20264;20265;20266;20267 13479;13480;13481;13482 13481 3 LIQSHPESAEDLQEK Unmodified 1722.8424 0.84244331 21 Q13813-3;F8W7K3;Q13813;Q13813-2;A6NG51 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 75.447 73.365 3 0.016756 1 50881 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.52 16.408 1594600 0 493930 0 0 0 1100700 4562 21 4514 20268;20269 13483 13483 1 LIRHYVEAVYPVEK Unmodified 1714.9406 0.94064121 1192 Q5T5X7 BEND3 BEN domain-containing protein 3 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 121.7 108.7 3 2.6843E-08 1 74509 20150910_Q1_SA_NiHu_Masterprac_group15_B 100.11 82.647 3525600 0 0 598440 0 904450 2022700 4563 1192 4515 20270;20271;20272 13484 13484 1 LIRHYVQLLYPR Unmodified 1569.9144 0.91436688 1192 Q5T5X7 BEND3 BEN domain-containing protein 3 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 131.99 127.03 3 0.0031254 1 86882 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.489 56.257 0 0 0 0 0 0 0 4564 1192 4516 20273 13485 13485 1 LISEMHSFIQIKK Unmodified 1572.8698 0.86978446 1155 Q16666-3;Q16666-2;Q16666;H3BLV7;E7EPR3 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 131.2 130.9 3 1.232E-09 3 84210 20150910_Q1_SA_NiHu_Masterprac_group13_B 104.59 68.999 27497000 0 12521000 0 14976000 0 0 4565 1155 4517 20274;20275 13486;13487;13488 13486 3 LISEMHSFIQIKK Oxidation (M) 1588.8647 0.86469908 1155 Q16666-3;Q16666-2;Q16666;H3BLV7;E7EPR3 IFI16 Gamma-interferon-inducible protein 16 yes no 0 1 1 By MS/MS By matching By matching By matching By matching By matching 1 1 109.79 102.34 3 0.0096778 1 68391 20150910_Q1_SA_NiHu_Masterprac_group10_C 61.235 43.982 894870 575250 319630 0 0 0 0 4566 1155 4517 20276;20277 13489 13489 145 1 LISETAQRVHTIGQKQK Unmodified 1936.0854 0.08540797 1299 Q8N4T4-2;Q8N4T4-4;Q8N4T4 ARHGEF39 Rho guanine nucleotide exchange factor 39 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 86.534 69.943 4 0.00411 1 55622 20150910_Q1_SA_NiHu_Masterprac_group13_C 47.639 21.674 1699200 0 0 1699200 0 0 0 4567 1299 4518 20278 13490 13490 1 LISGEEHFSSK Unmodified 1232.6037 0.60371659 468 E9PQV9;Q9BTE7;H0YCN4 DCUN1D5 DCN1-like protein 5 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 71.699 64.355 2;3 3.6261E-08 7 44962 20150910_Q1_SA_NiHu_Masterprac_group15_B 110.84 83.867 23930000 2649900 5638600 3080900 2701200 3083700 6775900 4568 468 4519 20279;20280;20281;20282;20283;20284;20285;20286;20287;20288;20289;20290 13491;13492;13493;13494;13495;13496;13497 13494 7 LISPLASPADGVK Unmodified 1266.7184 0.71835242 1345 Q8WYP5;Q8WYP5-3;Q8WYP5-2 AHCTF1 Protein ELYS yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 130.98 130.68 2 0.0013027 1 83789 20150910_Q1_SA_NiHu_Masterprac_group10_B 76.24 32.932 3569800 0 2819600 0 750210 0 0 4569 1345 4520 20291;20292 13498 13498 1 LISPQNLSVR Unmodified 1125.6506 0.6506072 1250 Q7Z333-3;Q7Z333;Q7Z333-4 SETX Probable helicase senataxin yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 124.36 119.59 2 0.038739 1 81251 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.751 13.024 543010 0 0 0 0 0 543010 4570 1250 4521 20293 13499 13499 1 LISPQNLSVRNNK Unmodified 1481.8314 0.83142511 1250 Q7Z333-3;Q7Z333;Q7Z333-4 SETX Probable helicase senataxin yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 101.03 93.812 3 0.0021661 2 64175 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.888 51.534 7132800 0 2134900 2654400 0 0 2343500 4571 1250 4522 20294;20295;20296 13500;13501 13500 2 LISQIQPEVDRER Unmodified 1581.8475 0.84746911 1540 Q9NRZ9-6;Q9NRZ9-5;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9 HELLS Lymphoid-specific helicase yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 106.84 97.135 3 0.023493 1 64640 20150910_Q1_SA_NiHu_Masterprac_group10_B 47.039 22.624 3468100 0 2892800 575250 0 0 0 4572 1540 4523 20297;20298 13502 13502 1 LISSDGHEFIVK Unmodified 1343.7085 0.70851601 340 E5RHG8;E5RJ89;Q15369;E5RGD9 TCEB1 Transcription elongation factor B polypeptide 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 2 3 1 2 118.78 110.19 2;3 6.9836E-80 10 75398 20150910_Q1_SA_NiHu_Masterprac_group15_B 147.62 111.62 83869000 15130000 10328000 17125000 5781000 504260 34999000 4573 340 4524 20299;20300;20301;20302;20303;20304;20305;20306;20307;20308;20309;20310;20311 13503;13504;13505;13506;13507;13508;13509;13510;13511;13512 13507 10 LITAADTTAEQR Unmodified 1288.6623 0.6622941 1198 Q5TG40;Q9NPF5 DMAP1 DNA methyltransferase 1-associated protein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 77.153 69.658 2 0.004647 5 48555 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.827 30.957 5736600 659390 747510 563810 487910 755060 2523000 4574 1198 4525 20312;20313;20314;20315;20316;20317 13513;13514;13515;13516;13517 13516 4 LITAADTTAEQRR Unmodified 1444.7634 0.76340513 1198 Q5TG40;Q9NPF5 DMAP1 DNA methyltransferase 1-associated protein 1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 69.717 60.918 3 0.030285 2 42693 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.238 18.56 4402700 0 366350 622460 0 901370 2512500 4575 1198 4526 20318;20319;20320;20321 13518;13519 13519 2 LITEDVQGK Unmodified 1001.5393 0.53932542 321 D6RAT0;P61247;D6RG13;D6RB09;F5H4F9;E9PFI5;D6RED7;D6RAS7;H0Y8L7;D6RGE0 RPS3A 40S ribosomal protein S3a yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 73.261 65.866 2 0.0092976 6 46118 20150910_Q1_SA_NiHu_Masterprac_group13_B 86.136 37.341 28125000 1882200 1983600 1789200 4089700 14453000 3927400 4576 321 4527 20322;20323;20324;20325;20326;20327 13520;13521;13522;13523;13524;13525 13520 6 LITLSVQDAPTK Unmodified 1284.7289 0.7289171 1346 Q8WYQ5-3;Q8WYQ5 DGCR8 Microprocessor complex subunit DGCR8 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 130.81 130.51 2 9.7671E-27 1 83595 20150910_Q1_SA_NiHu_Masterprac_group10_B 122.39 59.926 29963000 0 28389000 0 1574300 0 0 4577 1346 4528 20328;20329 13526 13526 1 LITSDKVENFHEEHEK Unmodified 1953.9432 0.94321999 1253 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 WAPAL Wings apart-like protein homolog yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 80.234 72.706 4 0.013107 2 55774 20150910_Q1_SA_NiHu_Masterprac_group15_C 43.914 27.842 10799000 824070 1197600 2699800 1431800 1834900 2811200 4578 1253 4529 20330;20331;20332;20333;20334;20335 13527;13528 13528 2 LITSEEERSPAK Unmodified 1358.7042 0.70415892 1063 Q12888;Q12888-2;A6NNK5;F8VY86;H7BZY0 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 57.395 50.327 3 0.022061 1 41513 20150910_Q1_SA_NiHu_Masterprac_group13_C 51.252 24.247 3116400 0 0 598500 969680 934100 614120 4579 1063 4530 20336;20337;20338;20339 13529 13529 1 LIVDPALDPALRRPSQK Unmodified 1888.0894 0.089430715 703 O15047;C9J2Z9 SETD1A Histone-lysine N-methyltransferase SETD1A yes no 0 0 2 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 131.76 123.61 4 0.0021549 2 83961 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.409 46.529 45927000 8811600 37115000 0 0 0 0 4580 703 4531 20340;20341 13530;13531 13530 2 LIVNVNDLR Unmodified 1054.6135 0.61349341 873 P25205 MCM3 DNA replication licensing factor MCM3 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 133.13 130.34 2 0.00032084 2 85823 20150910_Q1_SA_NiHu_Masterprac_group10_B 111.61 44.915 56947000 0 14551000 0 0 0 42396000 4581 873 4532 20342;20343 13532;13533 13533 2 LIVTQTMK Unmodified 932.53649 0.53648865 292 CON__P02754 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1 91.579 83.658 2 6.107E-09 5 57114 20150910_Q1_SA_NiHu_Masterprac_group13_B 119.41 60.802 101740000 12741000 11756000 9080100 10753000 17229000 40182000 + 4582 292 4533 20344;20345;20346;20347;20348;20349;20350 13534;13535;13536;13537;13538 13534 5 LIVTQTMKGLDIQK Unmodified 1586.9066 0.90656389 292 CON__P02754 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 132.61 125.67 2;3 2.5785E-125 4 85417 20150910_Q1_SA_NiHu_Masterprac_group13_B 154.72 130.21 123680000 0 0 0 11677000 5474900 106530000 + 4583 292 4534 20351;20352;20353;20354 13539;13540;13541;13542 13539 4 LKALDESHNQNLK Unmodified 1508.7947 0.79470526 756 O94804;H0YB71 STK10 Serine/threonine-protein kinase 10 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 63.271 55.139 3 0.023966 1 39147 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.88 21.645 6747400 545230 845140 941020 0 1172400 3243700 4584 756 4535 20355;20356;20357;20358;20359 13543 13543 1 LKECCDKPLLEK Unmodified 1531.7738 0.77383516 294 CON__P02769 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 1 68.522 61.509 3 1.6815E-97 8 48210 20150910_Q1_SA_NiHu_Masterprac_group15_C 153.81 90.336 219420000 31196000 65628000 21661000 31163000 66996000 2770800 + 4585 294 4536 20360;20361;20362;20363;20364;20365;20366;20367;20368;20369 13544;13545;13546;13547;13548;13549;13550;13551 13546 8 LKEFCCDSALPQSR Unmodified 1709.7865 0.78652511 490 F5GXK1;P20585 MSH3 DNA mismatch repair protein Msh3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 106.46 96.461 3 0.011501 1 65848 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.04 38.08 9608900 0 0 0 0 2146100 7462800 4586 490 4537 20370;20371 13552 13552 1 LKESFLVTGSQDCTVK Unmodified 1810.9135 0.91349976 1058 Q12788 TBL3 Transducin beta-like protein 3 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 116.41 113.62 3 0.0024403 2 73818 20150910_Q1_SA_NiHu_Masterprac_group10_B 67.646 51.888 8258500 0 4719200 0 0 0 3539300 4587 1058 4538 20372;20373 13553;13554 13554 2 LKESGHGNSVCPVTSNYHSSQR Unmodified 2443.1299 0.12986833 115 B4DQ42;Q9HC62 SENP2 Sentrin-specific protease 2 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 2 1 59.294 51.638 4;5 7.802E-07 4 36997 20150910_Q1_SA_NiHu_Masterprac_group10_B 80.142 62.464 11432000 1120100 1368400 1403900 871720 2673700 3993900 4588 115 4539 20374;20375;20376;20377;20378;20379;20380 13555;13556;13557;13558 13558 4 LKESHWEENRNENSGNSWNK Unmodified 2457.1058 0.10576207 547 Q99590-2;F8VXG7;Q99590 SCAF11 Protein SCAF11 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 71.57 63.373 4 0.03103 1 49841 20150910_Q1_SA_NiHu_Masterprac_group15_C 33.769 26.074 12188000 0 0 2448900 1524900 2443300 5770600 4589 547 4540 20381;20382;20383;20384 13559 13559 1 LKETGYVVERPSTTK Unmodified 1706.9203 0.9202997 1563;452 Q9NYF8-2;Q9NYF8;E9PK09;E9PQN2;E9PKI6;Q9NYF8-3;E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 75.289 70.075 3 0.02238 1 48614 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.158 33.42 3115900 0 803760 530180 253230 0 1528700 4590 1563;452 4541 20385;20386;20387;20388 13560 13560 1 LKGDDLQAIK Unmodified 1099.6237 0.62372375 68 G3V576;G3V4W0;B4DY08;G3V4C1;P07910-2;B2R603;G3V2Q1;P07910;P07910-3;G3V5V7;G8JL89;G3V2D6;O60812 HNRNPC;HNRNPCL1 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 80.18 72.652 2 0.0082396 1 50431 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.913 17.028 20492000 3759500 4219700 2020800 1282400 4022600 5186600 4591 68 4542 20389;20390;20391;20392;20393;20394 13561 13561 1 LKGDDLQAIKK Unmodified 1227.7187 0.71868677 68 G3V576;G3V4W0;B4DY08;G3V4C1;P07910-2;B2R603;G3V2Q1;P07910;P07910-3;G3V5V7;G8JL89;G3V2D6 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 64.879 57.818 3 0.0016646 1 42259 20150910_Q1_SA_NiHu_Masterprac_group10_C 95.483 56.733 10904000 1317200 2779600 1280300 925540 1929700 2672000 4592 68 4543 20395;20396;20397;20398;20399;20400 13562 13562 1 LKGQDPGAPQLQSESKPPK Unmodified 2004.064 0.064003825 1191 Q5T3I0;Q5T3I0-3;E9PAV9;F8W895 GPATCH4 G patch domain-containing protein 4 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 77.033 66.669 4 0.022085 1 52010 20150910_Q1_SA_NiHu_Masterprac_group15_C 35.625 19.314 3045400 311440 0 353710 0 1260400 1119900 4593 1191 4544 20401;20402;20403;20404 13563 13563 1 LKHLVDEPQNLIK Unmodified 1545.8879 0.88787736 294 CON__P02769 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 111.15 107.39 3 0.017214 1 73457 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.467 32.131 1503100 0 0 0 0 0 1503100 + 4594 294 4545 20405 13564 13564 1 LKHLVDEPQNLIKQNCDQFEK Unmodified 2595.3115 0.31152109 294 CON__P02769 yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 2 130.1 123.12 3;4 3.4989E-185 4 84991 20150910_Q1_SA_NiHu_Masterprac_group15_B 152.13 135.06 72079000 0 0 9744200 8731100 0 53604000 + 4595 294 4546 20406;20407;20408;20409 13565;13566;13567;13568 13567 4 LKIPLVK Unmodified 809.57386 0.57386043 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 130.27 112.4 2 0.027673 1 81135 20150910_Q1_SA_NiHu_Masterprac_group13_C 100.74 9.7563 12100000 0 0 9642800 0 2457300 0 4596 919;920 4547 20410;20411 13569 13569 1 LKIPLVKVDMK Unmodified 1282.8047 0.804665 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 133.14 117.45 3 0.0023133 1 78889 20150910_Q1_SA_NiHu_Masterprac_group10_C 95.618 28.698 0 0 0 0 0 0 0 4597 919;920 4548 20412 13570 13570 1 LKKPPTDEELK Unmodified 1296.7289 0.7289171 901 P35659;P35659-2;B4DFG0;H0Y993 DEK Protein DEK yes no 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 55.08 49.039 3 0.011578 2 35037 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.017 58.688 3567100 767170 730190 0 0 1239400 830320 4598 901 4549 20413;20414;20415;20416 13571;13572 13571 2 LKLESSSLKVK Unmodified 1230.7547 0.75473792 1201 Q5UIP0-2;Q5UIP0 RIF1 Telomere-associated protein RIF1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 82.847 80.815 3 0.014821 1 55613 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.416 75.416 1479900 0 688810 0 0 0 791060 4599 1201 4550 20417;20418 13573 13573 1 LKPAPPPPPAASAGK Unmodified 1397.8031 0.8030851 666 H7C1H8;P00519;P00519-2 ABL1 Tyrosine-protein kinase ABL1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 76.315 67.402 3 0.0061267 2 47186 20150910_Q1_SA_NiHu_Masterprac_group10_B 51.727 29.399 7374800 581330 1533500 1407500 0 1840900 2011500 4600 666 4551 20419;20420;20421;20422;20423 13574;13575 13575 2 LKPDPNTLCDEFK Unmodified 1575.7603 0.76029359 294 CON__P02769 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 127.56 125.7 3 5.6924E-74 1 84994 20150910_Q1_SA_NiHu_Masterprac_group15_B 138.02 116.96 12045000 0 2023800 0 417140 0 9603700 + 4601 294 4552 20424;20425;20426 13576 13576 1 LKPDPNTLCDEFKADEK Unmodified 2018.9619 0.96190652 294 CON__P02769 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 2 2 129.98 119.06 3;4 2.2151E-13 9 81642 20150910_Q1_SA_NiHu_Masterprac_group13_C 97.291 80.934 91689000 12898000 6322300 14849000 0 10066000 47554000 + 4602 294 4553 20427;20428;20429;20430;20431;20432;20433;20434;20435 13577;13578;13579;13580;13581;13582;13583;13584;13585 13578 8 LKPESSQQPGQDALAVK Unmodified 1794.9476 0.94757708 778 O96006;C9JXP4 ZBED1 Zinc finger BED domain-containing protein 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 3 2 89.462 80.538 2;3 0.0016072 4 55213 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.462 33.134 52561000 2065400 11066000 5065300 1219000 6151000 26995000 4603 778 4554 20436;20437;20438;20439;20440;20441;20442;20443;20444 13586;13587;13588;13589 13587 3 LKPESSQQPGQDALAVKAGHGYDSK Unmodified 2610.3038 0.30379318 778 O96006;C9JXP4 ZBED1 Zinc finger BED domain-containing protein 1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 98.188 81.295 4 0.028017 1 62423 20150910_Q1_SA_NiHu_Masterprac_group13_C 30.936 19.978 2221000 0 0 2221000 0 0 0 4604 778 4555 20445 13590 13590 1 LKPPVHYNGPSK Unmodified 1335.7299 0.72992016 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 72.162 64.817 3 1.3075E-07 6 50794 20150910_Q1_SA_NiHu_Masterprac_group15_C 105.36 63.959 75371000 5771100 9586400 11233000 5373400 20613000 22795000 4605 352;968 4556 20446;20447;20448;20449;20450;20451 13591;13592;13593;13594;13595;13596 13594 6 LKQSLPPGLAVKELK Unmodified 1619.9974 0.99742781 1005 P63173 RPL38 60S ribosomal protein L38 yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 2 126.88 114.51 3;4 1.6911E-42 5 80998 20150910_Q1_SA_NiHu_Masterprac_group13_C 123.76 103.48 27907000 9422800 0 14190000 1373700 315740 2605300 4606 1005 4557 20452;20453;20454;20455;20456;20457;20458 13597;13598;13599;13600;13601 13599 5 LKQVYIPNYNKPNPNQISVNNVK Unmodified 2683.4446 0.44458418 1078 Q13330;Q13330-3;E7ESY4;E7EN71;H0Y4T7;Q13330-2 MTA1 Metastasis-associated protein MTA1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 130.98 119.5 4 1.8683E-08 2 81750 20150910_Q1_SA_NiHu_Masterprac_group13_C 73.383 61.383 59839000 0 0 19593000 0 0 40246000 4607 1078 4558 20459;20460 13602;13603 13602 2 LKREEPTDTLSK Unmodified 1415.762 0.76200815 1247 Q7RTV3-2;Q7RTV3 ZNF367 Zinc finger protein 367 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 52.059 44.722 3 0.034755 1 37440 20150910_Q1_SA_NiHu_Masterprac_group15_C 58.04 17.663 2512600 967920 409610 0 0 1135100 0 4608 1247 4559 20461;20462;20463 13604 13604 1 LKTEPEEVSIEDSAQSDLK Unmodified 2117.0376 0.037573883 1155 Q16666-3;Q16666-2;Q16666;H3BLV7;E7EPR3 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 120.66 120.05 3 0.0017517 1 77234 20150910_Q1_SA_NiHu_Masterprac_group10_B 52.866 34.666 692930 0 692930 0 0 0 0 4609 1155 4560 20464 13605 13605 1 LKVTSMDQTAKDK Unmodified 1463.7654 0.76537896 12 A4FUP2 TEAD1 yes yes 0 0 2 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 57.706 51.409 3 0.0069686 3 42135 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.314 53.728 5101200 0 889480 679870 744810 1098300 1688800 4610 12 4561 20465;20466;20467;20468;20469 13606;13607;13608 13608 3 LLAAFEER Unmodified 947.50763 0.50763136 1519 Q9HC52;C9J6K3;C9JM54 CBX8 Chromobox protein homolog 8 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 114.55 113.54 2 0.034579 1 73671 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.812 6.2466 1668100 0 1668100 0 0 0 0 4611 1519 4562 20470 13609 13609 1 LLAAGFDNSCIK Unmodified 1307.6544 0.65437195 744 O75529-2;O75529 TAF5L TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 130.69 128.83 2 0.0050704 2 86385 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.781 62.758 12022000 0 2000000 0 3031000 0 6991400 4612 744 4563 20471;20472;20473 13610;13611 13610 1 LLADQAEAR Unmodified 985.51926 0.51925868 1016 P84098 RPL19 60S ribosomal protein L19 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 65.617 55.524 2 0.021779 1 39471 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.847 23.479 1863500 0 0 340910 0 456960 1065700 4613 1016 4564 20474;20475;20476 13612 13612 1 LLAEEEEEEK Unmodified 1217.5663 0.56632803 1292 Q8IYW5 RNF168 E3 ubiquitin-protein ligase RNF168 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 70.721 61.847 2 0.016158 1 43508 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.92 66.92 3526000 0 797440 440820 0 622170 1665600 4614 1292 4565 20477;20478;20479;20480 13613 13613 1 LLAEGHPDPDAELQR Unmodified 1659.8216 0.82164829 942 P49756 RBM25 RNA-binding protein 25 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 106.94 98.179 3 0.023599 1 66239 20150910_Q1_SA_NiHu_Masterprac_group10_C 40.278 17.287 7918000 828450 1291500 784490 425130 1206800 3381600 4615 942 4566 20481;20482;20483;20484;20485;20486 13614 13614 1 LLAQLAQECQEQR Unmodified 1585.7882 0.78823967 591 G5E960;Q01970 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 114.77 109.12 2 0.003397 3 71657 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.662 52.158 2926800 0 636700 0 210970 795730 1283500 4616 591 4567 20487;20488;20489;20490 13615;13616;13617 13617 3 LLASANLEEVTMK Unmodified 1417.7487 0.74866627 901 P35659;P35659-2;B4DFG0;H0Y993 DEK Protein DEK yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 133.3 133 2 4.8286E-241 2 86192 20150910_Q1_SA_NiHu_Masterprac_group10_B 180.61 94.15 55961000 0 41944000 0 14017000 0 0 4617 901 4568 20491;20492 13618;13619 13619 2 LLASANLEEVTMK Oxidation (M) 1433.7436 0.74358089 901 P35659;P35659-2;B4DFG0;H0Y993 DEK Protein DEK yes no 0 1 0 By matching By MS/MS By matching By matching By matching By matching 1 131.16 130.56 2 2.8903E-59 1 83954 20150910_Q1_SA_NiHu_Masterprac_group10_B 132.97 83.518 25603000 0 25603000 0 0 0 0 4618 901 4568 20493 13620 13620 100 1 LLASQGSQGAPLLSTPK Unmodified 1666.9254 0.92538508 1115 Q14807;B7Z265;H3BRB3 KIF22 Kinesin-like protein KIF22 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 131.42 131.42 2 0.017398 1 84420 20150910_Q1_SA_NiHu_Masterprac_group13_B 44.539 26.673 2133200 0 0 0 2133200 0 0 4619 1115 4569 20494 13621 13621 0 LLASSPALPSSGAQAR Unmodified 1524.826 0.82600539 1564 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 2 117.07 108.52 2 0.0032019 4 71278 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.682 49.173 19394000 2931000 2864800 2425700 745080 2736400 7690800 4620 1564 4570 20495;20496;20497;20498;20499;20500;20501 13622;13623;13624;13625 13624 4 LLASTLVHSVKK Unmodified 1294.7973 0.79727144 1563;452 Q9NYF8-2;Q9NYF8;Q9NYF8-4;E9PK09;E9PQN2;E9PKI6;E9PJA7;Q9NYF8-3;E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 97.226 97.226 3 0.008291 1 64666 20150910_Q1_SA_NiHu_Masterprac_group13_B 54.023 16.696 922160 0 0 0 922160 0 0 4621 1563;452 4571 20502 13626 13626 1 LLATASFTK Unmodified 950.54368 0.54368251 1345 Q8WYP5;Q8WYP5-3;Q8WYP5-2;H7C4S1 AHCTF1 Protein ELYS yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 111.45 102.52 2 0.006833 2 67860 20150910_Q1_SA_NiHu_Masterprac_group10_B 90.15 43.725 10218000 1546600 2870800 1223200 1172500 290100 3115200 4622 1345 4572 20503;20504;20505;20506;20507;20508 13627;13628 13628 2 LLAVIHELRPTEK Unmodified 1517.893 0.89296274 1660 Q9Y620 RAD54B DNA repair and recombination protein RAD54B yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 129.32 124.36 3 0.0043885 2 84025 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.338 31.433 2586100 0 0 0 0 0 2586100 4623 1660 4573 20509 13629;13630 13629 2 LLCGLLAER Unmodified 1043.5798 0.57975045 836 P14174 MIF Macrophage migration inhibitory factor yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 2 136.02 120.33 2 0.010041 2 79646 20150910_Q1_SA_NiHu_Masterprac_group10_C 101.65 20.35 192560000 192560000 0 0 0 0 0 4624 836 4574 20510;20511 13631;13632 13631 2 LLCVIKDTK Unmodified 1088.6264 0.62636629 423 Q8N556;E9PDT7 AFAP1 Actin filament-associated protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 93.455 85.406 2 0.0042921 6 57751 20150910_Q1_SA_NiHu_Masterprac_group10_C 106.88 33.216 13222000 2991000 1251200 1817200 1433900 1911500 3817400 4625 423 4575 20512;20513;20514;20515;20516;20517;20518 13633;13634;13635;13636;13637;13638 13637 6 LLDAESEDRPK Unmodified 1271.6357 0.635745 768 O95239;O95239-2;F5H4Q9;Q2VIQ3 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 2 2 64.482 57.488 2;3 0.0051626 4 40637 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.9 45.618 4293800 0 452940 0 0 719090 3121700 4626 768 4576 20519;20520;20521;20522;20523 13639;13640;13641;13642 13639 4 LLDEEISR Unmodified 973.50803 0.50802529 1412 Q96PU8-3;Q96PU8;Q96PU8-5;Q96PU8-9;Q96PU8-8;Q96PU8-6 QKI Protein quaking yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 96.06 88.097 2 1.5726E-15 2 60248 20150910_Q1_SA_NiHu_Masterprac_group15_B 124.98 49.94 10514000 682620 1623300 961650 342860 2000700 4902500 4627 1412 4577 20524;20525;20526;20527;20528;20529 13643;13644 13643 2 LLDHTGGCMYISGVPGTGK Unmodified 1961.9339 0.93391763 1080 Q13415 ORC1 Origin recognition complex subunit 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.56 130.96 3 0.00052442 1 84402 20150910_Q1_SA_NiHu_Masterprac_group10_B 76.761 52.28 14895000 0 14895000 0 0 0 0 4628 1080 4578 20530 13645 13645 1 LLDLVQQSCNYK Unmodified 1479.7392 0.73916421 969 P55769;B1AHD1 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 132.62 127.65 2 0.010253 1 87596 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.709 40.326 5426900 0 0 0 0 0 5426900 4629 969 4579 20531 13646 13646 0 LLDTNPEINQSDSQDSR Unmodified 1930.8868 0.88682732 1122 Q14CA3;Q14669;Q14CF1 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 97.245 94.687 2 0.0041871 1 64623 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.677 35.112 2488200 0 0 0 0 0 2488200 4630 1122 4580 20532 13647 13647 1 LLDTNPEINQSDSQDSRVAPR Unmodified 2354.1462 0.1462299 1122 Q14CA3;Q14669;Q14CF1 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 104.6 102.26 3 0.023797 1 69840 20150910_Q1_SA_NiHu_Masterprac_group15_B 35.133 19.408 1638000 0 811940 0 0 0 826040 4631 1122 4581 20533;20534 13648 13648 1 LLDVIHTENK Unmodified 1180.6452 0.64518747 589 P24941-2;P24941;G3V5T9;E7ESI2 CDK2 Cyclin-dependent kinase 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 105.11 95.409 2 1.274E-95 1 65107 20150910_Q1_SA_NiHu_Masterprac_group15_B 159.34 44.104 9552400 0 899130 926000 0 917720 6809600 4632 589 4582 20535;20536;20537;20538 13649 13649 1 LLEAQACTGGIIHPTTGQK Unmodified 1994.0255 0.025509829 840 P15924;P15924-2 DSP Desmoplakin yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 116.01 113.23 3 0.010552 1 77370 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.186 17.859 3324900 0 1290100 0 0 0 2034700 4633 840 4583 20539;20540 13650 13650 1 LLEDKNGEVQNLAVK Unmodified 1668.9046 0.90464964 1266 Q86VP6-2;Q86VP6;F5H6I6;F8WBB8;O75155-2;O75155 CAND1;CAND2 Cullin-associated NEDD8-dissociated protein 1;Cullin-associated NEDD8-dissociated protein 2 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 116.7 102.72 3 0.018707 1 68899 20150910_Q1_SA_NiHu_Masterprac_group10_C 43.316 43.316 1262500 1262500 0 0 0 0 0 4634 1266 4584 20541 13651 13651 1 LLEDSALSK Unmodified 974.52843 0.52842638 1388 Q96GM5-2;Q96GM5 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 93.088 84.038 2 0.028575 1 57563 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.157 1.7384 4372900 0 0 0 0 1658100 2714800 4635 1388 4585 20542;20543 13652 13652 1 LLEEALSSNR Unmodified 1130.5932 0.5931519 197 O94762;B7Z8Y7 RECQL5 ATP-dependent DNA helicase Q5 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 98.729 95.971 2 0.011635 1 65599 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.942 35.763 2266000 0 0 0 0 0 2266000 4636 197 4586 20544 13653 13653 1 LLEEEIQAPTSSK Unmodified 1443.7457 0.74568938 564 F8W9Q2;Q8N7H5-2;Q8N7H5;B4DGJ5 PAF1 RNA polymerase II-associated factor 1 homolog yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 118.87 108.64 2 1.6E-05 4 74465 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.592 66.871 15351000 4729600 3069500 1258500 655630 2432200 3205100 4637 564 4587 20545;20546;20547;20548;20549;20550;20551 13654;13655;13656;13657 13656 4 LLEEIHAMK Unmodified 1082.5794 0.57941609 1322 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 103.51 100.35 2 0.015798 1 68408 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.92 54.93 794280 0 0 0 0 0 794280 4638 1322 4588 20552 13658 13658 1 LLEGEECR Unmodified 1004.4597 0.45969489 302;299;287;788;305 P35908;CON__P35908;CON__Q6NXH9;Q01546;CON__Q3TTY5;CON__P07744;O95678;CON__Q8BGZ7;CON__O95678;CON__Q01546;P12036-2;F8WC76;P12036;P13647;CON__P13647;E7EU87;CON__Q5XQN5;CON__Q922U2;H0YI76;P02538;CON__P02538;E7EUE8;CON__P50446;P04259;CON__P04259;F5H6G5;Q86Y46;CON__Q32MB2;H0YIC5;B4DQ49;Q8N1N4-2;Q8N1N4;CON__Q8N1N4-2;CON__Q7RTT2;Q7RTS7;CON__Q7RTS7;F8W1S1 KRT2;KRT76;KRT75;NEFH;KRT5;KRT6A;KRT6B;KRT73;KRT78;KRT74 Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 75;Neurofilament heavy polypeptide;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 78;Keratin, type II cytoskeletal 74 no no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 57.378 51.141 2 0.0012614 3 41714 20150910_Q1_SA_NiHu_Masterprac_group13_C 111.95 70.295 13148000 0 3264800 5918600 827620 644120 2493300 + 4639 302;299;287;788;305 4589 20553;20554;20555;20556;20557 13659;13660;13661 13659 3 LLEGEEER Unmodified 973.47164 0.47163978 783;406 P02545;P02545-3;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q3BDU5;Q5TCJ4;Q5TCI8;Q03252;E9PBF6;P20700 LMNA;LMNB2;LMNB1 Prelamin-A/C;Lamin-A/C;Lamin-B2;Lamin-B1 no no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 52.954 50.171 2 0.034579 1 35756 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.812 23.355 10585000 1731700 4020700 0 1058500 0 3774300 4640 783;406 4590 20558;20559;20560;20561 13662 13662 1 LLEHLPQEVPYNVQQK Unmodified 1934.0262 0.026161756 748 O75616 ERAL1 GTPase Era, mitochondrial yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.75 131.14 3 2.3218E-24 1 84579 20150910_Q1_SA_NiHu_Masterprac_group10_B 102.63 78.404 0 0 0 0 0 0 0 4641 748 4591 20562 13663 13663 1 LLEIQGK Unmodified 799.48035 0.48035398 1602 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 87.489 78.355 2 3.5603E-13 4 53972 20150910_Q1_SA_NiHu_Masterprac_group10_B 128.38 10.372 17318000 1326800 1656700 2586000 0 3872100 7876500 4642 1602 4592 20563;20564;20565;20566;20567 13664;13665;13666;13667 13666 4 LLENSTLNSK Unmodified 1117.5979 0.59790293 628 Q6JHV3;H0YMI4;Q9Y6I4;B3KMX7;H0YLB7;H0YKU8;F5H1A6;H0YL81;B4DV65;H0YLG0 USP3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 3 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 2 1 1 1 1 1 77.911 70.291 2 5.1129E-05 3 48832 20150910_Q1_SA_NiHu_Masterprac_group15_B 108.47 16.616 117580000 22788000 13555000 15816000 12428000 20690000 32307000 4643 628 4593 20568;20569;20570;20571;20572;20573;20574 13668;13669;13670 13668 3 LLEQALK Unmodified 813.496 0.49600404 1426 Q99543;Q99543-2 DNAJC2 DnaJ homolog subfamily C member 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 93.63 84.254 2 0.011177 1 57374 20150910_Q1_SA_NiHu_Masterprac_group10_B 101.21 3.7389 1485500 0 926140 0 0 559350 0 4644 1426 4594 20575;20576 13671 13671 1 LLEQYKEESK Unmodified 1265.6503 0.65033243 1022;1023 Q00839;B3KX72;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 66.072 58.911 2;3 1.0521E-115 10 41688 20150910_Q1_SA_NiHu_Masterprac_group15_B 163.88 120.11 149260000 20382000 19566000 28324000 13451000 33436000 34097000 4645 1022;1023 4595 20577;20578;20579;20580;20581;20582;20583;20584;20585;20586;20587;20588;20589 13672;13673;13674;13675;13676;13677;13678;13679;13680;13681 13676 10 LLEQYKEESKK Unmodified 1393.7453 0.74529545 1022;1023 Q00839;B3KX72;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 0 0 2 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 55.624 49.382 3 1.5409E-07 5 40606 20150910_Q1_SA_NiHu_Masterprac_group15_C 110.54 75.768 13240000 1364600 1868800 2315500 1462500 1913100 4315900 4646 1022;1023 4596 20590;20591;20592;20593;20594;20595 13682;13683;13684;13685;13686 13685 5 LLEYTPTAR Unmodified 1062.571 0.5709599 946 P49841;P49841-2;F5H615 GSK3B Glycogen synthase kinase-3 beta yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 106.25 96.967 2 0.0038339 6 64946 20150910_Q1_SA_NiHu_Masterprac_group15_B 105.52 18.198 17049000 2662500 2107300 1648500 687210 2261600 7682300 4647 946 4597 20596;20597;20598;20599;20600;20601;20602 13687;13688;13689;13690;13691;13692 13688 6 LLFSDGEK Unmodified 907.4651 0.46509784 667 H7C1J2;H7C1M5;Q9H147;F2Z2A4 DNTTIP1 Deoxynucleotidyltransferase terminal-interacting protein 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 106.42 96.924 2 0.015392 1 69941 20150910_Q1_SA_NiHu_Masterprac_group15_C 85.161 10.906 23524000 0 0 2053900 2315200 5958500 13197000 4648 667 4598 20603;20604;20605;20606 13693 13693 1 LLFSNTAAQK Unmodified 1091.5975 0.597509 1420 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 103.97 97.201 2 4.4732E-15 2 66097 20150910_Q1_SA_NiHu_Masterprac_group15_B 120.45 71.029 7502700 0 0 0 179520 1850500 5472700 4649 1420 4599 20607;20608;20609 13694;13695 13695 2 LLGEQYYK Unmodified 1012.5229 0.52294707 1359 Q92785;B4DT58;E9PN04 DPF2 Zinc finger protein ubi-d4 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 109.57 100.74 2 0.008442 1 68599 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.429 71.683 18148000 803020 2693000 2649000 1262400 1520400 9220300 4650 1359 4600 20610;20611;20612;20613;20614;20615 13696 13696 1 LLGGFQETCSK Unmodified 1238.5965 0.59652272 1455 Q9BVP2-2;Q9BVP2 GNL3 Guanine nucleotide-binding protein-like 3 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 107.94 99.121 2 0.0027813 4 67477 20150910_Q1_SA_NiHu_Masterprac_group15_B 85.813 71.578 34978000 3568400 3805000 3503500 4987400 9329800 9783600 4651 1455 4601 20616;20617;20618;20619;20620;20621 13697;13698;13699;13700 13699 4 LLGSGYGGLTGGSSRGPPVTPSSEK Unmodified 2360.1972 0.19720284 211 B7ZLX3;H0Y5T1;F5H2E2;F5GWM7;Q7Z460-2;E7EUA5;F5GWS0;Q7Z460-3;F8WA11;Q7Z460;H0YHV8 CLASP1 CLIP-associating protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 129.84 120.34 3 2.1164E-13 5 85127 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.21 54.94 26563000 4137800 2216600 11316000 984220 1481200 6427200 4652 211 4602 20622;20623;20624;20625;20626;20627 13701;13702;13703;13704;13705 13702 5 LLHIYYQNSIDDK Unmodified 1620.8148 0.814772 1159 Q29RF7;Q29RF7-3;H0Y9L9 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 129.34 126.56 3 0.00049477 2 85331 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.781 57.861 13868000 0 556380 0 0 0 13312000 4653 1159 4603 20628;20629 13706;13707 13706 2 LLIYETEAK Unmodified 1078.591 0.59102664 942 P49756 RBM25 RNA-binding protein 25 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 116.72 108.64 2 0.040243 1 74240 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.908 26.53 4376700 0 1054300 715070 675190 793240 1138900 4654 942 4604 20630;20631;20632;20633;20634 13708 13708 1 LLLGPAGGGVPK Unmodified 1077.6546 0.65462995 1419 Q96SL8 FIZ1 Flt3-interacting zinc finger protein 1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 131.64 118.08 2 4.6736E-05 2 85480 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.973 75.943 19034000 0 0 6214000 0 2569200 10251000 4655 1419 4605 20635;20636;20637 13709;13710 13709 2 LLLIATGK Unmodified 827.54804 0.54803961 1533 Q9NQW6;Q9NQW6-2;H7C1K5 ANLN Actin-binding protein anillin yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 127 124.21 2 0.023129 3 79462 20150910_Q1_SA_NiHu_Masterprac_group10_B 77.318 29.402 6294400 0 1336100 0 0 0 4958300 4656 1533 4606 20638;20639 13711;13712;13713 13713 3 LLLLGAGESGK Unmodified 1056.6179 0.61791009 1000;1001;1002 P63092-2;A2A2R6;P38405;Q5JWF2-2;P11488;P63096;P19087;P09471-2;P09471;P08754;A8MTJ3;P04899;F5H4U5;P04899-4;P38405-2;P63092;Q5JWD1;A6NI00;Q5JWF2;H0Y7E8;Q5JWE9;P63092-3;H0Y7F4 GNAS;GNAL;GNAT1;GNAI1;GNAT2;GNAO1;GNAI3;GNAT3;GNAI2 Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(olf) subunit alpha;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(t) subunit alpha-1;Guanine nucleotide-binding protein G(i) subunit alpha-1;Guanine nucleotide-binding protein G(t) subunit alpha-2;Guanine nucleotide-binding protein G(o) subunit alpha;Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(t) subunit alpha-3;Guanine nucleotide-binding protein G(i) subunit alpha-2 no no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 132.11 123.82 2 1.2421E-12 5 83985 20150910_Q1_SA_NiHu_Masterprac_group10_B 113.69 58.964 79099000 0 19388000 25233000 4152900 6613300 23712000 4657 1001;1000;1002 4607 20640;20641;20642;20643;20644 13714;13715;13716;13717;13718 13718 4 LLLPGELAK Unmodified 952.59572 0.59571809 119 Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;O60814;Q5QNW6-2;B4DR52;Q99880;P57053;Q96A08 HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST1H2BL;H2BFS;HIST1H2BA Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B;Histone H2B type 1-L;Histone H2B type F-S;Histone H2B type 1-A no no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 133.47 133.17 2 9.3957E-07 2 86395 20150910_Q1_SA_NiHu_Masterprac_group10_B 116.37 35.181 79763000 0 72398000 0 7364700 0 0 4658 119 4608 20645;20646 13719;13720 13720 2 LLLQVQHASK Unmodified 1135.6713 0.67134264 795;826 P12236;P12235;P05141 SLC25A6;SLC25A4;SLC25A5 ADP/ATP translocase 3;ADP/ATP translocase 1;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 89.617 81.783 2 8.6523E-116 7 56060 20150910_Q1_SA_NiHu_Masterprac_group10_C 164.33 52.88 74237000 15351000 4446800 5916700 7262000 19932000 21329000 4659 826;795 4609 20647;20648;20649;20650;20651;20652;20653 13721;13722;13723;13724;13725;13726;13727 13727 7 LLLSATSGEK Unmodified 1017.5706 0.57062555 422 E9PDD9;Q9NW13 RBM28 RNA-binding protein 28 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 94.888 86.992 2 0.02 2 59098 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.624 15.967 11793000 2067900 2149300 1883200 1452400 3897600 342960 4660 422 4610 20654;20655;20656;20657;20658;20659 13728;13729 13728 2 LLMHGKEVGSIIGK Unmodified 1480.8436 0.84356971 1135;548 F8VZX2;Q15366-4;Q15366-5;Q15366-3;Q15366;Q15366-2;G3V0E8;B4DXP5;F8W0G4;B4DLC0;F8VRG9;F8W1G6;P57721-2;P57721-3;P57721-5;E9PFP8;P57721-4;P57721;F8VTZ0;H3BSP4;Q15365 PCBP2;PCBP3;PCBP1 Poly(rC)-binding protein 2;Poly(rC)-binding protein 3;Poly(rC)-binding protein 1 no no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 116.46 104.58 3 2.9869E-30 2 76525 20150910_Q1_SA_NiHu_Masterprac_group13_C 117.93 100.36 4576300 1591000 0 2047200 0 0 938070 4661 548;1135 4611 20660;20661;20662 13730;13731 13730 2 LLNDEDPVVVTK Unmodified 1340.7187 0.71874635 485 F5GWP8;C9JTX4;C9J826;C9JK18;C9JKY1;P14923 JUP Junction plakoglobin yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 115.33 115.33 2 0.034746 1 74758 20150910_Q1_SA_NiHu_Masterprac_group13_B 46.069 22.241 975870 0 0 0 975870 0 0 4662 485 4612 20663 13732 13732 1 LLNLHENQIQIIK Unmodified 1574.9144 0.91442646 1521 Q9HCJ2 LRRC4C Leucine-rich repeat-containing protein 4C yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 1 1 1 1 1 90.39 82.526 3 0.0017287 3 56132 20150910_Q1_SA_NiHu_Masterprac_group10_B 72.152 27.641 404120000 46258000 48198000 84515000 45109000 76111000 103930000 4663 1521 4613 20664;20665;20666;20667;20668;20669;20670 13733;13734;13735 13734 3 LLNLKDSSMADASK Unmodified 1491.7603 0.76029359 1420 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 110.42 101.48 3 0.0011285 1 69210 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.415 53.721 6179000 964740 790990 1264700 0 0 3158700 4664 1420 4614 20671;20672;20673;20674 13736 13736 1 LLNPSLQK Unmodified 911.54402 0.54401687 227 C9J4N8;Q9HAV4;E7EQN7 XPO5 Exportin-5 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 89.408 81.729 2 6.107E-09 4 55937 20150910_Q1_SA_NiHu_Masterprac_group15_B 119.41 60.81 15904000 1004700 2522800 1453300 990140 2362500 7570200 4665 227 4615 20675;20676;20677;20678;20679;20680 13737;13738;13739;13740 13737 4 LLNTWTNRYPDAK Unmodified 1590.8154 0.8154407 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 121.62 111.19 3 0.0014183 3 72699 20150910_Q1_SA_NiHu_Masterprac_group10_B 89.356 65.475 18248000 0 3481200 4337200 0 928290 9501300 4666 1012 4616 20681;20682;20683;20684 13741;13742;13743 13742 3 LLPAELPAK Unmodified 950.58007 0.58006802 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 114.5 111.42 2 0.011764 1 76136 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.645 46.25 3559100 0 763140 0 0 0 2796000 4667 1012 4617 20685;20686 13744 13744 1 LLPERQTDVTGEEELTKGK Unmodified 2142.1168 0.11682726 1109 Q14676;Q14676-3;F8VV34;E7EVA7 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 105.81 97.86 3;4 0.0034049 6 64966 20150910_Q1_SA_NiHu_Masterprac_group13_B 47.732 34.578 76831000 0 14877000 11621000 21535000 13464000 15334000 4668 1109 4618 20687;20688;20689;20690;20691;20692;20693;20694;20695;20696 13745;13746;13747;13748;13749;13750 13745 6 LLPQVEAAR Unmodified 995.57638 0.57637963 1263 Q86UT8;E9PJ16;E9PPT8 CCDC84 Coiled-coil domain-containing protein 84 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 97.924 95.641 2 0.018028 1 65256 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.908 21.372 3508400 0 1269000 0 0 0 2239300 4669 1263 4619 20697;20698 13751 13751 1 LLQAETASNSAR Unmodified 1259.647 0.64697839 1121 Q14980-2;Q14980;F5H2L0;H0YFY6 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 63.944 56.868 2 0.00065502 5 40253 20150910_Q1_SA_NiHu_Masterprac_group13_B 93.766 43.282 33622000 5079800 6588600 4137300 3280800 172400 14363000 4670 1121 4620 20699;20700;20701;20702;20703;20704;20705 13752;13753;13754;13755;13756 13752 5 LLQAETASNSARAAER Unmodified 1686.8649 0.86491009 1121 Q14980-2;Q14980;F5H2L0;H0YFY6 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 78.53 69.38 3 0.016273 2 55301 20150910_Q1_SA_NiHu_Masterprac_group13_C 41.996 25.731 5642000 0 1220500 2210600 0 1249700 961270 4671 1121 4621 20706;20707;20708;20709 13757;13758 13757 2 LLQALAQYQNHLQEQPRK Unmodified 2177.1705 0.17053458 682 I3L1L3;Q9BQG0;Q9BQG0-2;E7EN09 MYBBP1A Myb-binding protein 1A yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 2 131.2 126.23 3;4 0.00044047 2 86048 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.141 42.731 34718000 0 0 0 0 0 34718000 4672 682 4622 20710;20711 13759;13760 13760 2 LLQAQGVEVPSKDSLPK Unmodified 1808.0044 0.0043636815 734 O60841 EIF5B Eukaryotic translation initiation factor 5B yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 130.41 123.32 3 1.0133E-90 3 77131 20150910_Q1_SA_NiHu_Masterprac_group10_C 133.96 111.42 68244000 15329000 10912000 0 0 0 42003000 4673 734 4623 20712;20713;20714 13761;13762;13763 13763 3 LLQLGQQPR Unmodified 1051.6138 0.61382777 1650 Q9Y446 PKP3 Plakophilin-3 yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 103.48 96.207 2 0.0096355 4 69692 20150910_Q1_SA_NiHu_Masterprac_group15_C 85.676 30.145 18471000 0 4153200 0 0 2661400 11657000 4674 1650 4624 20715;20716;20717 13764;13765;13766;13767 13765 4 LLQLVEDR Unmodified 984.5604 0.56039521 853 P17844;E7ETL9 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 120.42 118.63 2 0.014776 2 76486 20150910_Q1_SA_NiHu_Masterprac_group10_B 87.476 13.175 30051000 0 7696900 0 2908800 0 19445000 4675 853 4625 20718;20719;20720 13768;13769 13769 2 LLQLVEDRGSGR Unmodified 1341.7365 0.7364621 853 P17844;E7ETL9 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 107.99 100.01 3 0.0041085 3 66053 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.267 29.596 154390000 0 21976000 27471000 3388800 10248000 91305000 4676 853 4626 20721;20722;20723;20724;20725 13770;13771;13772 13772 3 LLQQGTAPAQAK Unmodified 1224.6826 0.68263561 170 Q86YP4;B5MC40;Q86YP4-2;B4DKZ7;F5H7D9;H7C3H1 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 62.866 56.006 2 3.9776E-07 6 45397 20150910_Q1_SA_NiHu_Masterprac_group13_C 101.71 41.456 59031000 927400 12095000 13230000 747370 1512200 30518000 4677 170 4627 20726;20727;20728;20729;20730;20731 13773;13774;13775;13776;13777;13778 13774 6 LLQQNTQLK Unmodified 1084.6241 0.6240581 1029 Q01664;I3L254 TFAP4 Transcription factor AP-4 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 72.338 66.723 2 0.0023881 3 46599 20150910_Q1_SA_NiHu_Masterprac_group10_B 106.42 27.275 8493400 490600 1469300 0 359950 1425300 4748300 4678 1029 4628 20732;20733;20734;20735;20736 13779;13780;13781 13781 3 LLQQQNDITGLSR Unmodified 1484.7947 0.79470526 348 E7EN20;H0Y612;Q9UPN9-2;Q9UPN9 TRIM33 E3 ubiquitin-protein ligase TRIM33 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 118.42 110.53 2 0.003651 1 75513 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.292 40.741 3174300 0 381350 389210 0 0 2403800 4679 348 4629 20737;20738;20739 13782 13782 1 LLQSKCPAESVDSSGK Unmodified 1704.8352 0.83524944 347 E9PED3;Q9P0K7-3;E7EMX7;Q9P0K7;Q9P0K7-2;D6REL2;D6R9G6;D6RF74;D6RE17 RAI14 Ankycorbin yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 72.015 64.553 3 0.0014337 6 50578 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.331 53.091 8923600 2734100 851000 1125300 1407700 1335100 1470400 4680 347 4630 20740;20741;20742;20743;20744;20745;20746 13783;13784;13785;13786;13787;13788 13785 5 LLQSQLQVK Unmodified 1055.6339 0.63389451 1395 Q96I25;Q5W011;Q5W010 RBM17 Splicing factor 45 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 102.59 94.294 2 1.2572E-54 6 70176 20150910_Q1_SA_NiHu_Masterprac_group13_C 145.16 65.682 22257000 2230200 3047600 4439700 3014100 3188800 6336500 4681 1395 4631 20747;20748;20749;20750;20751;20752 13789;13790;13791;13792;13793;13794 13790 6 LLQVSVDDR Unmodified 1043.5611 0.56112349 928 P46939;Q5T097 UTRN Utrophin yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 54.542 45.97 2 0.015798 1 37637 20150910_Q1_SA_NiHu_Masterprac_group13_C 74.92 4.1118 6187800 0 0 2421200 1506700 2260000 0 4682 928 4632 20753;20754;20755 13795 13795 1 LLRHHYEQQQEDLAR Unmodified 1934.9711 0.97110649 486;430 F5H2G1;F5GWX5;Q14839;Q14839-2;Q12873;E9PG89;Q12873-2 CHD4;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 no no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 2 1 3 65.473 57.393 3;4 0.00022791 6 47572 20150910_Q1_SA_NiHu_Masterprac_group13_C 86.944 62.464 44470000 0 0 7031800 0 839480 36599000 4683 486;430 4633 20756;20757;20758;20759;20760;20761 13796;13797;13798;13799;13800;13801 13797 6 LLRHHYEQQQEDLARNLGK Unmodified 2347.2145 0.21452466 486;430 F5H2G1;F5GWX5;Q14839;Q14839-2;Q12873;E9PG89;Q12873-2 CHD4;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 87.85 85.994 4 0.0019406 1 58872 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.76 37.398 2330900 0 0 0 0 0 2330900 4684 486;430 4634 20762 13802 13802 1 LLRTNLDESDVQPVK Unmodified 1725.9261 0.92611336 1647 Q9Y3I0;E7EQS9 C22orf28;RTCB tRNA-splicing ligase RtcB homolog yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 108.22 106.82 3 0.0046446 1 70352 20150910_Q1_SA_NiHu_Masterprac_group10_B 53.924 53.924 1149800 0 1149800 0 0 0 0 4685 1647 4635 20763 13803 13803 1 LLRYDHQQRLTAK Unmodified 1640.9111 0.91107242 647 H3BV19;H3BSA1;P19784 CSNK2A2 Casein kinase II subunit alpha' yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 68.695 60.397 4 0.025223 1 47983 20150910_Q1_SA_NiHu_Masterprac_group15_C 45.28 29.894 2682800 0 0 0 0 2024200 658560 4686 647 4636 20764;20765 13804 13804 1 LLSAAYITSHLK Unmodified 1315.75 0.7499869 1094 Q14119 VEZF1 Vascular endothelial zinc finger 1 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 2 133.51 133.3 2;3 1.0477E-117 3 86672 20150910_Q1_SA_NiHu_Masterprac_group13_B 157.03 71.063 224970000 0 73257000 0 151710000 0 0 4687 1094 4637 20766;20767;20768 13805;13806;13807 13806 3 LLSAAYITSHLKTHGQSQSINCNTCK Unmodified 2931.4331 0.43310957 1094 Q14119 VEZF1 Vascular endothelial zinc finger 1 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 130.84 130.84 4 0.0012417 1 83819 20150910_Q1_SA_NiHu_Masterprac_group13_B 50.536 44.938 51369000 0 0 0 51369000 0 0 4688 1094 4638 20769 13808 13808 1 LLSAVSSTK Unmodified 904.52295 0.52294707 1351 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 65.792 61.714 2 0.036116 1 43367 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.765 20.986 2091300 473250 595990 0 0 0 1022000 4689 1351 4639 20770;20771;20772 13809 13809 1 LLSISGK Unmodified 716.44324 0.44324019 801 P06748-2;P06748;P06748-3;E5RI98 NPM1 Nucleophosmin yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 92.091 78.223 1 0.023852 1 58797 20150910_Q1_SA_NiHu_Masterprac_group15_C 57.281 19.723 45492000 9525000 0 12821000 0 23145000 0 4690 801 4640 20773;20774;20775 13810 13810 1 LLSITVR Unmodified 800.51199 0.51198846 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 122.38 117.62 2 0.040677 1 80020 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.784 16.981 2047900 0 0 0 0 0 2047900 4691 1012 4641 20776 13811 13811 1 LLSPEDMNK Unmodified 1045.5114 0.51139611 1195 Q5T7W0-2;Q5T7W0 ZNF618 Zinc finger protein 618 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 94.927 89.699 2 0.011126 1 61399 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.647 65.385 6770400 0 209800 0 482310 2048200 4030100 4692 1195 4642 20777;20778;20779;20780 13812 13812 1 LLSPQQPALQR Unmodified 1249.7143 0.71427009 1116 Q14814-6;Q14814-3;Q5T9U4;Q14814-5;Q14814-4;Q14814-2;Q14814 MEF2D Myocyte-specific enhancer factor 2D yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 102.44 99.377 2 0.02569 1 67723 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.633 47.533 582340 0 0 0 0 0 582340 4693 1116 4643 20781 13813 13813 0 LLSPYSPQTQETDSAVQK Unmodified 1990.9848 0.98475045 437 E9PHD6;Q9P265 DIP2B Disco-interacting protein 2 homolog B yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 117.3 111.83 2 0.0017373 3 76234 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.121 39.125 6634700 2459800 1259900 0 667170 0 2247700 4694 437 4644 20782;20783;20784;20785 13814;13815;13816 13814 3 LLSTGPTEPWSIREK Unmodified 1712.9097 0.90973501 171 H7C128;H7C179;Q9H0E9-4;B5MCW3;H7C127;Q9H0E9-2;Q9H0E9;F8WBH2;F8WDX5;D6RID0;F8WCS7;C9JV05 BRD8 Bromodomain-containing protein 8 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 131.78 129.92 3 9.9292E-43 4 84364 20150910_Q1_SA_NiHu_Masterprac_group10_B 122.78 95.657 42903000 0 11461000 0 18307000 0 13135000 4695 171 4645 20786;20787;20788;20789 13817;13818;13819;13820 13820 4 LLTEIHGGAGGPSGRAEAGRALASGTEASSTDPGAPGGPGGAEGPMAK Unmodified 4327.0887 0.088738386 1156 Q16763 UBE2S Ubiquitin-conjugating enzyme E2 S yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 129.78 120.78 5 5.4342E-08 2 80816 20150910_Q1_SA_NiHu_Masterprac_group13_C 24.31 13.025 10283000 0 0 5295700 4986800 0 0 4696 1156 4646 20790;20791 13821;13822 13822 2 LLTMSCSDK Unmodified 1053.4835 0.4834668 593 P78563-2;P78563-3;P78563-4;G5E9B4;P78563;F5H398 ADARB1 Double-stranded RNA-specific editase 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 81.953 73.305 2 0.0062431 1 55984 20150910_Q1_SA_NiHu_Masterprac_group15_C 92.838 70.499 2203100 0 0 0 0 619500 1583600 4697 593 4647 20792;20793 13823 13823 1 LLTSPSLKPSAVSSVTSSTSLSK Unmodified 2276.2475 0.24750708 1528 Q9NPG3-2;Q9NPG3 UBN1 Ubinuclein-1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.91 131.3 3 6.9903E-33 1 84794 20150910_Q1_SA_NiHu_Masterprac_group10_B 92.551 77.501 15278000 0 15278000 0 0 0 0 4698 1528 4648 20794 13824 13824 0 LLYNRPGTVSSLK Unmodified 1446.8195 0.81946344 901 P35659;P35659-2;B4DFG0;D6R9L5;D6RDA2 DEK Protein DEK yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 106.93 98.554 2;3 6.9664E-05 11 65293 20150910_Q1_SA_NiHu_Masterprac_group10_B 96.866 59.073 91190000 11031000 11862000 11268000 7122700 20540000 29366000 4699 901 4649 20795;20796;20797;20798;20799;20800;20801;20802;20803;20804;20805 13825;13826;13827;13828;13829;13830;13831;13832;13833;13834;13835 13833 10 LLYQIAQAEAK Unmodified 1246.6921 0.69213767 195 B7Z8L0;Q92833 JARID2 Protein Jumonji yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 130.93 125.97 2 0.0258 1 85728 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.691 1.5378 2948600 0 0 0 0 0 2948600 4700 195 4650 20806 13836 13836 0 LLYTDRYPEEK Unmodified 1425.714 0.71399532 570 F8WDV8;Q15361 TTF1 Transcription termination factor 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 92.574 91.219 3 0.0030771 1 62395 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.687 50.186 1917700 0 604840 0 244440 0 1068500 4701 570 4651 20807;20808;20809 13837 13837 1 LLYVTPEK Unmodified 961.54843 0.54843354 965 P54132;F5H7R6;H0YNU5 BLM Bloom syndrome protein yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 2 1 1 1 1 1 103.6 94.877 2 8.703E-05 2 64006 20150910_Q1_SA_NiHu_Masterprac_group10_C 113.71 95.798 33664000 3559700 3677100 3525000 2143800 6929000 13830000 4702 965 4652 20810;20811;20812;20813;20814;20815;20816 13838;13839 13839 2 LMAEDEEGYRK Unmodified 1339.6078 0.60781569 952;951 P51531-2;P51531;F6VDE0;P51532-5;P51532-2;P51532-3;P51532-4;P51532;Q9HBD4 SMARCA2;SMARCA4 Probable global transcription activator SNF2L2;Transcription activator BRG1 no no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 2 62.017 55.987 2;3 0.00018129 2 39507 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.597 77.955 11989000 809420 1479100 599550 1030200 1190200 6880500 4703 951;952 4653 20817;20818;20819;20820;20821;20822;20823 13840;13841 13840 2 LMAQEQVR Unmodified 973.5015 0.50150012 1353 Q92576-2;Q92576;E9PE34;B3KP41;D6R9X2;D6RBF0 PHF3 PHD finger protein 3 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 1 1 1 55.913 52.253 2 0.0079237 3 38390 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.458 23.245 24772000 3245200 4027900 0 2270200 0 15229000 4704 1353 4654 20824;20825;20826;20827;20828 13842;13843;13844 13842 3 LMDGTSQALAK Unmodified 1133.5751 0.575059 1253 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 WAPAL Wings apart-like protein homolog yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 2 1 86.009 77.248 2 0.0018545 7 58237 20150910_Q1_SA_NiHu_Masterprac_group15_C 90.05 58.764 33294000 5229900 5829700 4188100 3189400 5697500 9159800 4705 1253 4655 20829;20830;20831;20832;20833;20834;20835;20836 13845;13846;13847;13848;13849;13850;13851 13848 7 LMEEIMSEK Unmodified 1108.5144 0.51443258 853 P17844;E7ETL9 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 122.37 109.31 2 4.6772E-56 1 74762 20150910_Q1_SA_NiHu_Masterprac_group15_B 148.69 81.728 9448300 0 0 1075700 0 1964300 6408300 4706 853 4656 20837;20838;20839 13852 13852 1 LMEEIMSEKENK Oxidation (M) 1495.6898 0.68983076 853 P17844;E7ETL9 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 1 1 By matching By matching By matching By matching By matching By MS/MS 1 67.202 66.047 3 0.036702 1 46063 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.566 47.513 634050 0 0 0 0 0 634050 4707 853 4657 20840 13853 13853 91 1 LMEEIMSEKENK Unmodified 1479.6949 0.69491614 853 P17844;E7ETL9 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 3 2 2 100.68 93.49 2;3 6.6189E-97 3 63766 20150910_Q1_SA_NiHu_Masterprac_group15_B 150.14 119.41 24973000 0 4827700 2107100 0 0 18038000 4708 853 4657 20841;20842;20843;20844;20845;20846;20847 13854;13855;13856 13855 3 LMEEISTSAAPAARPAAAK Unmodified 1883.9775 0.977497 1405 Q96L91-4;Q96L91-3;Q96L91-5;Q96L91-2;Q96L91;A7E2D7 EP400 E1A-binding protein p400 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 108.71 101.19 3 1.9978E-10 1 69116 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.616 66.251 3250400 0 604230 755610 0 0 1890600 4709 1405 4658 20848;20849;20850 13857 13857 1 LMELHGEGSSSGK Unmodified 1330.6187 0.61871473 321 D6RAT0;P61247;D6RG13;D6R9B6;H0Y9Y4 RPS3A 40S ribosomal protein S3a yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 2 1 63.97 55.985 2;3 1.7752E-34 2 45031 20150910_Q1_SA_NiHu_Masterprac_group15_C 120.84 100.52 41576000 10210000 722580 2480000 1922700 25186000 1054700 4710 321 4659 20851;20852;20853;20854;20855;20856;20857 13858;13859 13859 2 LMELHGEGSSSGKATGDETGAK Unmodified 2160.9957 0.99572584 321 D6RAT0;P61247;D6R9B6;H0Y9Y4 RPS3A 40S ribosomal protein S3a yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 3 2 1 3 1 68.115 61.939 3;4 8.3053E-07 4 44703 20150910_Q1_SA_NiHu_Masterprac_group10_C 65.598 52.82 19353000 6944600 1577200 1231300 7874500 1724900 0 4711 321 4660 20858;20859;20860;20861;20862;20863;20864;20865;20866;20867 13860;13861;13862;13863 13863 4 LMIWDTR Unmodified 933.47422 0.47422274 1153;1051 Q16576;E9PC52;Q16576-2;Q5JP01;Q5JP02;Q09028-3;Q09028;Q09028-2;Q09028-4;H0YCT5;H0YF10;H0YDK2 RBBP7;RBBP4 Histone-binding protein RBBP7;Histone-binding protein RBBP4 no no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 133.15 132.54 2 0.0086822 1 86123 20150910_Q1_SA_NiHu_Masterprac_group10_B 98.418 59.626 45256000 0 45256000 0 0 0 0 4712 1153;1051 4661 20868 13864 13864 1 LMLSTSEYSQSPK Unmodified 1469.7072 0.70719538 1063 Q12888;Q12888-2;A6NNK5;F8VY86;C9JXV0 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 117.02 107.8 2 0.00046178 5 72254 20150910_Q1_SA_NiHu_Masterprac_group10_C 93.348 70.857 21992000 2626300 3576300 5117700 1887900 1992000 6792300 4713 1063 4662 20869;20870;20871;20872;20873;20874 13865;13866;13867;13868;13869 13869 5 LMQLTNVSR Unmodified 1060.5699 0.56991404 347 E9PED3;Q9P0K7-3;E7EMX7;Q9P0K7;Q9P0K7-2 RAI14 Ankycorbin yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 109.73 100.13 2 0.0098714 2 71935 20150910_Q1_SA_NiHu_Masterprac_group15_C 85.355 33.909 3444100 0 0 364710 693070 921820 1464500 4714 347 4663 20875;20876;20877;20878 13870;13871 13871 2 LMQLVDHRGGGGGGGGR Oxidation (M) 1638.8009 0.80087004 1361 Q92841-1;Q92841;Q92841-2;C9JMU5 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 1 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 46.535 41.16 4 0.025203 1 29129 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.527 37.539 8416200 0 1018800 880020 1032300 2300700 3184500 4715 1361 4664 20879;20880;20881;20882;20883 13872 13872 153 1 LMQLVDHRGGGGGGGGR Unmodified 1622.806 0.80595542 1361 Q92841-1;Q92841;Q92841-2;C9JMU5 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 70.704 63.545 3 0.037194 1 44228 20150910_Q1_SA_NiHu_Masterprac_group10_B 36.345 17.768 67132000 0 7240700 6942400 8798200 13895000 30256000 4716 1361 4664 20884;20885;20886;20887;20888 13873 13873 1 LMQLVDHRGGGGGGGGRSR Unmodified 1865.9391 0.93909486 1361 Q92841-1;Q92841;Q92841-2;C9JMU5 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 2 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 60.626 54.109 4 0.0028629 3 38343 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.223 24.258 75016000 0 5341400 17897000 13978000 13685000 24114000 4717 1361 4665 20889;20890;20891;20892;20893 13874;13875;13876 13876 3 LMQLVDHRGGGGGGGK Unmodified 1537.7783 0.77834369 629 Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 3 1 68.553 60.036 3 7.7039E-07 6 42516 20150910_Q1_SA_NiHu_Masterprac_group10_B 90.759 53.159 131010000 6086400 19505000 15002000 13482000 39927000 37004000 4718 629 4666 20894;20895;20896;20897;20898;20899;20900;20901;20902 13877;13878;13879;13880;13881;13882 13881 5 LMTPKPVSIATNR Unmodified 1426.7966 0.79661951 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 113.53 104.45 3 3.8675E-09 1 71582 20150910_Q1_SA_NiHu_Masterprac_group15_B 103.11 78.094 11782000 2012800 1077500 885420 956050 1317700 5532200 4719 531 4667 20903;20904;20905;20906;20907;20908 13883 13883 1 LNCQVIGASVDSHFCHLAWVNTPKK Unmodified 2880.4163 0.41633729 1044 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 133.15 133.15 4 2.2872E-09 1 86212 20150910_Q1_SA_NiHu_Masterprac_group13_B 64.349 51.599 24154000 0 0 0 24154000 0 0 4720 1044 4668 20909 13884 13884 1 LNEIVGNEDTVSR Unmodified 1444.7158 0.71578623 895 P35250-2;P35250;H7C5S7;H7C5P1;H7C5Q7;F8WC37;H7C5A0;H7C5G4 RFC2 Replication factor C subunit 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 92.79 90.757 2 3.6049E-60 2 61972 20150910_Q1_SA_NiHu_Masterprac_group15_B 135.04 100.14 5977100 0 1297500 0 0 0 4679500 4721 895 4669 20910;20911;20912 13885;13886 13885 2 LNEQHQLILSK Unmodified 1321.7354 0.73539946 382 E7ETU6;Q8IYB5-3;Q8IYB5-2;Q8IYB5 SMAP1 Stromal membrane-associated protein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 90.157 82.386 2;3 3.3524E-238 13 61489 20150910_Q1_SA_NiHu_Masterprac_group15_C 188.48 125.01 169640000 26998000 30380000 20405000 18480000 21696000 51685000 4722 382 4670 20913;20914;20915;20916;20917;20918;20919;20920;20921;20922;20923;20924;20925 13887;13888;13889;13890;13891;13892;13893;13894;13895;13896;13897;13898;13899 13894 13 LNEQQSVLQR Unmodified 1213.6415 0.64149908 1110 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 80.41 71.487 2 3.5758E-15 1 49698 20150910_Q1_SA_NiHu_Masterprac_group15_B 121.36 68.871 4782400 0 0 200460 0 0 4581900 4723 1110 4671 20926;20927 13900 13900 1 LNESLDENFK Unmodified 1207.5721 0.57208211 1595 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 2 1 109.18 100.8 2 0.0097058 2 66778 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.229 6.8582 5325000 1500100 1785300 0 0 2039600 0 4724 1595 4672 20928;20929;20930;20931 13901;13902 13901 2 LNESTFDTQITK Unmodified 1395.6882 0.6881745 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 117.93 108.6 2 2.3726E-98 6 76598 20150910_Q1_SA_NiHu_Masterprac_group15_C 154.36 126.68 77745000 6283800 6988200 5502600 2959700 15536000 40475000 4725 1012 4673 20932;20933;20934;20935;20936;20937 13903;13904;13905;13906;13907;13908 13906 6 LNESTFDTQITKK Unmodified 1523.7831 0.78313752 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 105.32 93.99 3 3.1928E-11 3 64141 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.669 70.879 14392000 540050 0 1852100 1542100 10458000 0 4726 1012 4674 20938;20939;20940;20941;20942 13909;13910;13911 13910 3 LNFNSPDCLDYK Unmodified 1484.6606 0.66057954 889 P32242 OTX1 Homeobox protein OTX1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.93 131.32 2 0.00023449 1 84809 20150910_Q1_SA_NiHu_Masterprac_group10_B 95.273 81.947 8242600 0 8242600 0 0 0 0 4727 889 4675 20943 13912 13912 1 LNFSHGTHEYHAETIK Unmodified 1882.8962 0.89621022 837 P14618;H3BQ34;H3BTN5;P14618-2;H3BT25;H3BUW1;H3BTJ2 PKM Pyruvate kinase PKM;Pyruvate kinase yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 86.063 77.314 3 0.033889 1 53326 20150910_Q1_SA_NiHu_Masterprac_group15_B 36.592 17.305 2692600 0 0 0 0 1563400 1129200 4728 837 4676 20944;20945 13913 13913 1 LNGISKGADSELSTVPSVTK Unmodified 2002.0582 0.058249745 923 P46087;Q3KQS4;P46087-2 NOP2 Putative ribosomal RNA methyltransferase NOP2 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 131.06 115.37 3 1.03E-65 2 76650 20150910_Q1_SA_NiHu_Masterprac_group10_C 121.44 85.964 29000000 29000000 0 0 0 0 0 4729 923 4677 20946 13914;13915 13915 2 LNHVAAGLVSPSLK Unmodified 1404.8089 0.80889876 1039 Q5T760;Q5T757;Q05519-2;Q05519 SRSF11 Serine/arginine-rich splicing factor 11 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 122.84 112.71 3 0.0023526 1 77072 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.035 38.359 4722900 1256800 0 0 0 0 3466000 4730 1039 4678 20947;20948 13916 13916 1 LNISFPATGCQK Unmodified 1334.6653 0.66527099 5 A2A3R7;P62753 RPS6 40S ribosomal protein S6 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 133.04 122.71 2 0.014704 2 79169 20150910_Q1_SA_NiHu_Masterprac_group10_C 55.105 19.105 13483000 6675400 0 0 0 0 6807600 4731 5 4679 20949;20950 13917;13918 13918 1 LNKQQTDIAVNWAGGLHHAK Unmodified 2200.1501 0.15013349 1086 Q13547;Q5TEE2 HDAC1 Histone deacetylase 1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 3 2 1 1 3 120.38 113.35 3;4;5 1.06E-100 6 80370 20150910_Q1_SA_NiHu_Masterprac_group13_C 133.32 117.69 79803000 0 4629000 46807000 1299900 1098000 25969000 4732 1086 4680 20951;20952;20953;20954;20955;20956;20957;20958;20959;20960 13919;13920;13921;13922;13923;13924 13919 6 LNKQQTDIAVNWAGGLHHAKK Unmodified 2328.2451 0.24509651 1086 Q13547;Q5TEE2 HDAC1 Histone deacetylase 1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 120.56 102.66 4 0.004815 1 74921 20150910_Q1_SA_NiHu_Masterprac_group13_C 44.831 30.384 1449700 0 0 1449700 0 0 0 4733 1086 4681 20961 13925 13925 1 LNLESDVR Unmodified 944.49271 0.49270958 1512 Q9HAT3 CACNA1B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 84.988 77.41 2 0.0064467 6 53236 20150910_Q1_SA_NiHu_Masterprac_group10_B 95.909 9.0765 228210000 19544000 57628000 27956000 12957000 28460000 81661000 4734 1512 4682 20962;20963;20964;20965;20966;20967 13926;13927;13928;13929;13930;13931 13930 6 LNLLAHSRPPVPEWDISQDPPKHK Unmodified 2773.4664 0.46638225 1497 Q9H6R4-4;Q9H6R4;Q9H6R4-2;G8JLK7;Q9H6R4-3;F5H6M7 NOL6 Nucleolar protein 6 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 132.44 127.48 4 0.00081424 1 87415 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.522 38.274 18759000 0 0 0 0 0 18759000 4735 1497 4683 20968 13932 13932 1 LNLSSNELK Unmodified 1016.5502 0.55022446 1505 Q9H9A6 LRRC40 Leucine-rich repeat-containing protein 40 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 102.6 94.342 2 0.025209 1 63305 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.962 13.873 6887700 548220 1729200 845190 0 0 3765100 4736 1505 4684 20969;20970;20971;20972 13933 13933 1 LNNCGMGIGGGK Unmodified 1176.538 0.53796198 921 P46060;F8W7I9;H0Y4Q3 RANGAP1 Ran GTPase-activating protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 66.923 65.769 2 0.025274 1 45781 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.632 25.377 1016300 0 0 0 0 0 1016300 4737 921 4685 20973 13934 13934 1 LNPADAPNPVVFVATK Unmodified 1651.8934 0.89335667 754 O94776;Q68DB1 MTA2;DKFZp686F2281 Metastasis-associated protein MTA2 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 134.89 116.89 2 0.001419 1 86031 20150910_Q1_SA_NiHu_Masterprac_group13_C 75.91 56.624 22016000 0 0 22016000 0 0 0 4738 754 4686 20974 13935 13935 1 LNQIMVGTGNGLAK Unmodified 1414.7602 0.76023401 1553 Q9NW82 WDR70 WD repeat-containing protein 70 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 119.73 117.91 2 0.013114 2 75894 20150910_Q1_SA_NiHu_Masterprac_group13_B 48.608 30.943 2662900 0 461700 0 526470 0 1674800 4739 1553 4687 20975;20976;20977 13936;13937 13936 2 LNQLKPGLQYK Unmodified 1300.7503 0.75032125 243 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;C9JFV5;Q12906;G5E9M5;B4DFG4 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 96.976 88.361 2;3 1.4628E-19 10 59645 20150910_Q1_SA_NiHu_Masterprac_group10_B 120.45 73.497 76333000 5480600 10866000 8927700 3529400 18716000 28814000 4740 243 4688 20978;20979;20980;20981;20982;20983;20984;20985;20986;20987;20988;20989;20990 13938;13939;13940;13941;13942;13943;13944;13945;13946;13947 13946 10 LNQPPEDGISSVK Unmodified 1382.7042 0.70415892 719 O43684-2;O43684 BUB3 Mitotic checkpoint protein BUB3 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 94.987 87.367 2 0.0012865 6 59114 20150910_Q1_SA_NiHu_Masterprac_group13_B 76.326 63.695 31885000 0 4120500 2667200 1696800 7664500 15736000 4741 719 4689 20991;20992;20993;20994;20995 13948;13949;13950;13951;13952;13953 13948 6 LNQSGTSVGTDEESDVTQEEER Unmodified 2409.0415 0.041549641 945;1251 P49792;E9PGT0;P0DJD0;P0DJD1;F8VYC4;E7ES93;B4DTM4;Q7Z3J3 RANBP2;RGPD1;RGPD2;RGPD4 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 4 no no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 2 99.907 89.349 2;3 0.0099404 2 67236 20150910_Q1_SA_NiHu_Masterprac_group13_C 38.724 22.409 12651000 0 4033400 1429500 2309200 4878400 0 4742 945;1251 4690 20996;20997;20998;20999;21000 13954;13955 13954 2 LNQVARQQSHFAMMHGGTGFAGIDSSSPEVK Unmodified 3286.5612 0.56116363 1135 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 2 131.14 126.18 4;5 1.3986E-07 2 85979 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.967 43.398 68643000 0 0 0 0 0 68643000 4743 1135 4691 21001;21002 13956;13957 13957 2 LNRQQTDMAVNWAGGLHHAK Unmodified 2246.1127 0.11270213 1358 Q92769;H3BM24;B3KRS5 HDAC2 Histone deacetylase 2;Histone deacetylase yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 2 120.66 109.85 3;4 6.2794E-27 4 75326 20150910_Q1_SA_NiHu_Masterprac_group15_B 104.16 77.19 86187000 0 0 19065000 0 3429400 63693000 4744 1358 4692 21003;21004;21005;21006 13958;13959;13960;13961 13961 4 LNRQQTDMAVNWAGGLHHAKK Unmodified 2374.2077 0.20766515 1358 Q92769;H3BM24;B3KRS5 HDAC2 Histone deacetylase 2;Histone deacetylase yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 2 2 110.11 99.589 4;5 3.4742E-16 2 67817 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.973 76.037 12734000 0 0 2857200 0 0 9877200 4745 1358 4693 21007;21008;21009;21010 13962;13963 13962 1 LNSGGGLSEELGSAR Unmodified 1445.711 0.71103521 7 Q96KQ7-2;B0UZY3;Q96KQ7;B0UZY0;A2ABF8;B0UZY1;A2ABF9;H0YIM0;H0YHA9 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 112.83 103.81 2 0.00058651 4 68637 20150910_Q1_SA_NiHu_Masterprac_group10_B 82.349 41.469 6882000 707000 1422400 1061500 278110 569420 2843500 4746 7 4694 21011;21012;21013;21014;21015;21016 13964;13965;13966;13967 13967 4 LNSGGGLSEELGSARR Unmodified 1601.8121 0.81214624 7 Q96KQ7-2;B0UZY3;Q96KQ7;B0UZY0;A2ABF8;B0UZY1;A2ABF9;H0YIM0;H0YHA9 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 100.12 92.458 3 0.0008143 2 63222 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.045 69.045 13012000 0 3314000 2455700 922130 1921000 4399600 4747 7 4695 21017;21018;21019;21020;21021 13968;13969 13968 2 LNTIIIK Unmodified 813.53239 0.53238955 1600 Q9UK61-2;Q9UK61-3;Q9UK61-4;Q9UK61 FAM208A Protein FAM208A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 115.99 105.59 2 0.0087167 1 72174 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.458 8.7059 1356200 0 0 0 0 383360 972850 4748 1600 4696 21022;21023 13970 13970 1 LNTLLQR Unmodified 856.51305 0.51305109 1022;1023 Q00839;B3KX72;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 93.531 85.652 2 0.033822 1 58710 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.916 24.128 8106500 699120 777830 533700 547160 1617700 3931000 4749 1022;1023 4697 21024;21025;21026;21027;21028;21029 13971 13971 1 LNTLLQRAPQCLGK Unmodified 1610.8926 0.89264516 1022;1023 Q00839;B3KX72;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 125.25 117.48 3 9.6861E-199 5 76559 20150910_Q1_SA_NiHu_Masterprac_group10_C 168.83 128.95 121290000 63024000 7443400 0 10573000 6806300 33446000 4750 1022;1023 4698 21030;21031;21032;21033;21034 13972;13973;13974;13975;13976 13976 5 LNTSVDTHKIK Unmodified 1254.6932 0.6932003 1144 Q15652-2;Q15652-3;Q15652 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 56.963 50.538 3 0.003958 1 36123 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.014 44.24 3945100 401980 522650 574640 608790 848390 988620 4751 1144 4699 21035;21036;21037;21038;21039;21040 13977 13977 1 LNVCVSKQPAIMPGQSYGLEDGSCSYK Oxidation (M) 3003.3776 0.3776281 838 P14866;A6NIT8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 1 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 131.69 122.61 3 6.6937E-117 3 84309 20150910_Q1_SA_NiHu_Masterprac_group10_B 130.72 118.48 64591000 0 20024000 19627000 19648000 5293100 0 4752 838 4700 21041;21042;21043;21044 13978;13979;13980 13980 86 3 LNVCVSKQPAIMPGQSYGLEDGSCSYK Unmodified 2987.3827 0.38271348 838 P14866;A6NIT8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 132.76 124.48 3 7.2686E-220 5 85713 20150910_Q1_SA_NiHu_Masterprac_group13_B 154.17 140.52 925700000 0 173570000 119300000 135190000 256750000 240890000 4753 838 4700 21045;21046;21047;21048;21049 13981;13982;13983;13984;13985 13981 5 LPAELQELPGLSHQYWSAPSDKEGYSGVGLLSR Unmodified 3583.7947 0.79471184 584 G3V3C7;G3V5Q1;G3V3M6;P27695;G3V5M0;G3V359;H7C4A8 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 132.57 132.57 6 0.033585 1 85591 20150910_Q1_SA_NiHu_Masterprac_group13_B 14.578 7.2153 60156000 0 0 0 60156000 0 0 4754 584 4701 21050 13986 13986 0 LPIKVLK Unmodified 809.57386 0.57386043 1385 Q96F45-3;Q96F45-2;Q96F45 ZNF503 Zinc finger protein 503 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 107.73 98.208 2 6.4428E-07 1 66649 20150910_Q1_SA_NiHu_Masterprac_group15_B 122.15 32.251 6804600 0 0 636570 838210 2264800 3065000 4755 1385 4702 21051;21052;21053;21054 13987 13987 1 LPLATIVK Unmodified 853.56369 0.56368968 754 O94776;Q68DB1 MTA2;DKFZp686F2281 Metastasis-associated protein MTA2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 132.3 127.33 2 0.008061 2 87242 20150910_Q1_SA_NiHu_Masterprac_group15_B 103.83 61.437 12885000 0 0 0 0 0 12885000 4756 754 4703 21055 13988;13989 13989 2 LPSRPGAQGVEPQNLR Unmodified 1717.9224 0.92236539 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 99.545 91.612 3 0.0025534 2 61375 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.467 47.6 19547000 297270 4965600 6096100 0 0 8188200 4757 1344 4704 21056;21057;21058;21059 13990;13991 13991 2 LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR Unmodified 3125.432 0.43198317 1022;1023 Q00839;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.06 131.45 3 0.0024358 1 84885 20150910_Q1_SA_NiHu_Masterprac_group10_B 31.923 25.179 13689000 0 13689000 0 0 0 0 4758 1022;1023 4705 21060 13992 13992 1 LQAAMASVIVRPSSSTK Unmodified 1744.9506 0.95055397 1144 Q15652-2;Q15652-3;Q15652 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 123.95 117.13 3 0.0025585 2 80368 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.846 48.177 89188000 85990000 0 0 1447200 0 1750500 4759 1144 4706 21061;21062;21063 13993;13994 13993 2 LQADPKPISPQQK Unmodified 1448.7987 0.798728 668 O75128-6;H7C1N2;O75128-3;O75128;O75128-7;O75128-2 COBL Protein cordon-bleu yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 68.844 60.472 3 0.0019916 1 42423 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.169 58.157 2494000 0 0 870030 0 0 1624000 4760 668 4707 21064;21065 13995 13995 1 LQAEISQAARK Unmodified 1213.6779 0.67788459 389 E7EVD1;O43395;B4DSY9 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 60.201 54.967 3 0.010174 5 39137 20150910_Q1_SA_NiHu_Masterprac_group10_B 56.043 23.825 6645600 1107000 1381200 0 330250 2419600 1407600 4761 389 4708 21066;21067;21068;21069;21070 13996;13997;13998;13999;14000 13999 5 LQAETEELEEEK Unmodified 1446.6726 0.67258402 240 C9JCN8;P15408-3;P15408 FOSL2 Fos-related antigen 2 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 93.326 84.373 2 0.00092463 5 57367 20150910_Q1_SA_NiHu_Masterprac_group13_B 92.856 60.603 11815000 2780200 0 1830800 4282800 266730 2654400 4762 240 4709 21071;21072;21073;21074;21075 14001;14002;14003;14004;14005 14002 5 LQAFGLNPK Unmodified 986.55492 0.5549159 1312 Q8N9T8;D3YTE0;Q8N9T8-2 KRI1 Protein KRI1 homolog yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 122.02 114.94 2 0.0061761 2 78345 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.143 41.951 3469200 1003300 272960 0 0 0 2192900 4763 1312 4710 21076;21077;21078 14006;14007 14006 2 LQAQSLSTVGPR Unmodified 1255.6884 0.68844927 713 O43290;G3V1T2 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 95.612 94.005 2 0.0024533 1 62897 20150910_Q1_SA_NiHu_Masterprac_group10_B 74.537 44.611 692230 0 692230 0 0 0 0 4764 713 4711 21079 14008 14008 1 LQCPQCVFGTNCPK Unmodified 1707.7531 0.75311649 1492 Q9H582-2;Q9H582;F5GWV4 ZNF644 Zinc finger protein 644 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 119.14 113.57 2 1.5142E-07 4 75359 20150910_Q1_SA_NiHu_Masterprac_group10_C 95.264 83.063 6963700 4393000 1399100 0 1171500 0 0 4765 1492 4712 21080;21081;21082 14009;14010;14011;14012 14011 4 LQDLSSCITQGK Unmodified 1348.6657 0.66566492 408 H3BT29;H3BUJ5;P29590-14;P29590-10;E9PBR7;P29590-4;H3BT57;P29590-12;P29590-2;P29590-5;P29590-9;P29590-13;P29590-3;P29590-8;P29590-11;H2N333;P29590;H3BVD2 PML Protein PML yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 107.69 100.17 2 0.0040708 1 66516 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.004 23.161 5467400 0 1124600 1167000 0 0 3175700 4766 408 4713 21083;21084;21085 14013 14013 1 LQDSVPENKGISLR Unmodified 1554.8366 0.83657007 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 107.05 98.271 3 0.0026268 1 66968 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.16 42.93 33216000 2223200 4887200 3618500 766750 5415100 16306000 4767 919;920 4714 21086;21087;21088;21089;21090;21091 14014 14014 1 LQEEKPSEDQIHK Unmodified 1579.7842 0.78420015 1318 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 53.021 46.862 3 1.5577E-24 8 34211 20150910_Q1_SA_NiHu_Masterprac_group10_B 117.95 86.067 18988000 4225500 2720600 2253800 2155100 3180900 4452400 4768 1318 4715 21092;21093;21094;21095;21096;21097;21098 14015;14016;14017;14018;14019;14020;14021;14022 14020 8 LQEELSENDK Unmodified 1203.5619 0.56191135 770 O95347-2;O95347;Q5T821;F5GZR0 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 63.054 56.819 2 1.339E-05 3 40120 20150910_Q1_SA_NiHu_Masterprac_group15_B 111.86 89.828 5543500 0 1211800 0 0 1566100 2765600 4769 770 4716 21099;21100;21101;21102 14023;14024;14025 14024 3 LQEKEDLQELNDR Unmodified 1628.8006 0.8005785 783 P02545;P02545-3;Q6UYC3;P02545-2;Q3BDU5;Q5TCJ4 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 97.11 85.755 3 0.0085254 2 58813 20150910_Q1_SA_NiHu_Masterprac_group10_C 57.267 36.022 4399900 995800 1246900 842010 0 1315200 0 4770 783 4717 21103;21104;21105;21106 14026;14027 14027 2 LQEQVTDLRSQNTK Unmodified 1658.8588 0.85876208 827 P12270 TPR Nucleoprotein TPR yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 78.766 71.237 3 0.0016899 3 49389 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.997 25.571 9606900 804860 2359300 1233600 1590300 1624200 1994600 4771 827 4718 21107;21108;21109;21110;21111;21112 14028;14029;14030 14028 3 LQESIEYEDLGKNNSVK Unmodified 1964.9691 0.96910039 77 B3KXE0;P32780;E9PM51 GTF2H1 General transcription factor IIH subunit 1 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 119.15 109.73 3 0.0015833 3 79013 20150910_Q1_SA_NiHu_Masterprac_group13_C 59.15 45.111 14143000 1538900 4374400 2159200 1066500 1525900 3477900 4772 77 4719 21113;21114;21115;21116;21117;21118 14031;14032;14033 14031 3 LQESQPGNAVIDK Unmodified 1397.7151 0.71505795 249 Q6IQ49-2;C9JIQ2;Q6IQ49;Q6IQ49-3 SDE2 Protein SDE2 homolog yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 76.401 74.368 2 0.020944 1 51389 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.75 28.876 1164500 0 450210 0 0 0 714290 4773 249 4720 21119;21120 14034 14034 0 LQETLSAADR Unmodified 1102.5619 0.56185177 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 75.298 70.083 2 0.0026343 1 48531 20150910_Q1_SA_NiHu_Masterprac_group15_B 100.88 30.85 6150800 0 1519300 269280 737930 0 3624300 4774 1012 4721 21121;21122;21123;21124 14035 14035 1 LQETQMSTTSK Unmodified 1252.5969 0.59691665 906 P39880-2;P39880;P39880-3;P39880-4;P39880-5;P39880-6;H0YL76;G3V1Z6;Q13948-2;Q13948;H0YMA9 CUX1 Homeobox protein cut-like 1;Protein CASP yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 50.694 45.066 2 0.021563 1 36600 20150910_Q1_SA_NiHu_Masterprac_group13_C 54.772 30.7 1214100 126680 321700 354110 0 0 411610 4775 906 4722 21125;21126;21127;21128 14036 14036 1 LQGIDLDRTVQQVNQEK Unmodified 1983.0385 0.038517356 1362 Q92878-2;Q92878;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 2 1 1 131.86 130.32 3 1.4028E-44 4 86999 20150910_Q1_SA_NiHu_Masterprac_group15_B 115.04 89.72 364650000 0 51206000 0 291330000 0 22111000 4776 1362 4723 21129;21130;21131;21132 14037;14038;14039;14040 14039 4 LQGIDLDRTVQQVNQEKQEK Unmodified 2368.2347 0.23465098 1362 Q92878-2;Q92878;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 130.97 113.1 3 0.0012123 1 81850 20150910_Q1_SA_NiHu_Masterprac_group13_C 52.814 38.96 10086000 0 0 6770600 0 3315500 0 4777 1362 4724 21133;21134 14041 14041 0 LQGMVTETTMK Unmodified 1237.6046 0.60464457 660 Q02241-2;H7BYN4;Q02241;B4E1K0 KIF23 Kinesin-like protein KIF23 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 100.17 92.056 2 0.017889 3 62786 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.225 42.78 15825000 2304200 2462200 209200 1304400 375100 9170100 4778 660 4725 21135;21136;21137;21138;21139;21140 14042;14043;14044 14043 3 LQGQAPGALEAGAAPAGRR Unmodified 1789.9547 0.95472815 1301 Q8N5A5-3;Q8N5A5-2;Q8N5A5 ZGPAT Zinc finger CCCH-type with G patch domain-containing protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 91.463 83.718 3 0.0026407 1 57314 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.121 12.816 17480000 1545300 2330900 2539100 1338600 3986200 5739900 4779 1301 4726 21141;21142;21143;21144;21145;21146 14045 14045 1 LQGQFKGLVK Unmodified 1116.6655 0.66552898 414 Q5JTH9-2;E9PCK7;Q5JTH9;F5H456 RRP12 RRP12-like protein yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 97.044 89.065 2 3.8705E-47 5 65723 20150910_Q1_SA_NiHu_Masterprac_group15_C 137.05 38.522 19995000 4526600 1586300 3134500 3887000 4005300 2855500 4780 414 4727 21147;21148;21149;21150;21151;21152 14046;14047;14048;14049;14050 14048 5 LQGQLEQGDDTAAER Unmodified 1629.7594 0.75944196 1321 Q8NE71;Q8NE71-2;H0YGW7 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 74.119 66.6 2 6.6622E-21 7 48421 20150910_Q1_SA_NiHu_Masterprac_group10_C 110.55 91.277 9367400 1647800 1127200 618410 568280 2738700 2666900 4781 1321 4728 21153;21154;21155;21156;21157;21158;21159 14051;14052;14053;14054;14055;14056;14057 14057 7 LQGQLEQGDDTAAERLEK Unmodified 1999.9811 0.98106206 1321 Q8NE71;Q8NE71-2;H0YGW7 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 102.68 94.316 3 6.2919E-273 4 64406 20150910_Q1_SA_NiHu_Masterprac_group15_B 178.47 157.62 61561000 5890400 5862200 4207600 10462000 24622000 10517000 4782 1321 4729 21160;21161;21162;21163;21164;21165 14058;14059;14060;14061 14059 3 LQIFSVEGQK Unmodified 1147.6237 0.62372375 23 A6NHR9;A6NHR9-2 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 132.56 127.59 2 0.009282 1 87594 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.332 0.94449 11242000 0 0 0 0 0 11242000 4783 23 4730 21166 14062 14062 1 LQIQCVVEDDK Unmodified 1345.6548 0.65476588 451 E9PK01;P29692;E9PQZ1;P29692-3;E9PBQ9;P29692-2;E9PRY8 EEF1D Elongation factor 1-delta no no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 121.88 119.2 2 0.00053364 1 76867 20150910_Q1_SA_NiHu_Masterprac_group10_B 95.477 60.976 1999000 0 1578400 0 0 0 420580 4784 451 4731 21167;21168 14063 14063 1 LQISTNLQRR Unmodified 1227.7048 0.70476804 1362 Q92878-2;Q92878;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 90.964 84.918 3 0.0095929 1 57612 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.841 27.241 12349000 814840 3944600 2917500 1276900 0 3395400 4785 1362 4732 21169;21170;21171;21172;21173 14064 14064 1 LQLEETMPSPYGR Unmodified 1519.7341 0.73407884 1035 Q02880-2;Q02880;B4DLV2 TOP2B DNA topoisomerase 2-beta yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.55 131.94 2 0.0099538 1 85415 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.879 29.848 8646900 0 8646900 0 0 0 0 4786 1035 4733 21174 14065 14065 0 LQLEETMPSPYGRR Unmodified 1675.8352 0.83518986 1035 Q02880-2;Q02880;B4DLV2 TOP2B DNA topoisomerase 2-beta yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 129.68 127.83 3 0.00068547 2 85582 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.318 56.83 35069000 0 14312000 0 1557400 0 19200000 4787 1035 4734 21175;21176;21177 14066;14067 14066 2 LQLQAEER Unmodified 985.51926 0.51925868 809 P09038-2;P09038-3;P09038-1;P09038 FGF2 Fibroblast growth factor 2 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 70.087 67.003 2 0.02567 1 46599 20150910_Q1_SA_NiHu_Masterprac_group13_B 74.92 21.426 10298000 1398700 3115600 0 1124700 0 4658900 4788 809 4735 21178;21179;21180;21181 14068 14068 1 LQLQNPPAIHGSGSGSCQ Unmodified 1849.8741 0.87409456 1488 Q9H410;B4DWT2;Q5JW54;Q9H410-2;Q9H410-3 DSN1 Kinetochore-associated protein DSN1 homolog yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 111.35 103.29 2 0.004769 1 70478 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.082 31.92 7482400 0 1083900 1340100 1662200 1734400 1661700 4789 1488 4736 21182;21183;21184;21185;21186 14069 14069 1 LQLVRGGQAEK Unmodified 1197.683 0.68296996 165 B4E363;Q9Y285 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 64.541 56.309 3 0.037612 1 46036 20150910_Q1_SA_NiHu_Masterprac_group13_C 49.3 0 4064700 514560 811320 866820 0 715660 1156400 4790 165 4737 21187;21188;21189;21190;21191 14070 14070 1 LQNATPTNFKTK Unmodified 1361.7303 0.73031409 369 E7ERG2;Q9NXF1-2;Q9NXF1 TEX10 Testis-expressed sequence 10 protein yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 67.729 60.518 3 4.2667E-18 4 47938 20150910_Q1_SA_NiHu_Masterprac_group15_C 114.71 89.009 12794000 1755500 1369900 1375700 1333400 3865800 3093400 4791 369 4738 21192;21193;21194;21195;21196;21197 14071;14072;14073;14074 14073 4 LQNELDMVK Unmodified 1088.5536 0.55359527 947 P49916-2;P49916 LIG3 DNA ligase 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 106.66 104.17 2 0.0058015 1 71093 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.85 31.034 2427100 0 462210 0 0 0 1964900 4792 947 4739 21198;21199 14075 14075 1 LQNIRDNVEKESK Unmodified 1571.8267 0.82673367 1476 Q9H081 MIS12 Protein MIS12 homolog yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 56.381 49.214 3 0.029289 1 36619 20150910_Q1_SA_NiHu_Masterprac_group10_C 56.205 27.772 619230 619230 0 0 0 0 0 4793 1476 4740 21200 14076 14076 1 LQNKEHVIEALRR Unmodified 1604.9111 0.91107242 557 H7C123;H7C2C5;F8W7C6;P27635 RPL10 60S ribosomal protein L10 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 72.027 71.399 4 0.0012376 1 49370 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.819 57.182 4788500 0 0 0 967310 0 3821200 4794 557 4741 21201;21202 14077 14077 1 LQNSASATALVSR Unmodified 1316.7048 0.70482762 170 Q86YP4;B5MC40;Q86YP4-2;B4DKZ7;F5H7D9;H7C3H1 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 94.553 88.347 2 4.3539E-09 5 59846 20150910_Q1_SA_NiHu_Masterprac_group10_B 102.52 79.97 58234000 1068700 14111000 9520100 1088800 0 32445000 4795 170 4742 21203;21204;21205;21206;21207 14078;14079;14080;14081;14082 14082 5 LQNTGVADGYPVRLECR Unmodified 1946.9632 0.96324392 1343 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-5;Q8WX93-4;Q8WX93-2;Q8WX93-9;Q8WX93-7;H0YA05 PALLD Palladin yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 122.79 120.11 3 0.021561 1 77137 20150910_Q1_SA_NiHu_Masterprac_group10_B 39.629 29.494 4997900 0 1450800 0 0 0 3547100 4796 1343 4743 21208;21209 14083 14083 1 LQNVNRDIQR Unmodified 1254.6793 0.67928157 1362 Q92878-2;Q92878;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 50.645 49.691 3 0.020931 1 35389 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.184 30.176 3372700 0 0 0 0 0 3372700 4797 1362 4744 21210 14084 14084 1 LQPEEADVPAYPK Unmodified 1455.7246 0.72456001 1447 Q9BTC0 DIDO1 Death-inducer obliterator 1 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 117.4 108.05 2 0.0012701 4 76266 20150910_Q1_SA_NiHu_Masterprac_group15_C 78.324 65.528 11837000 2640300 1173400 1486600 972840 2244700 3319100 4798 1447 4745 21211;21212;21213;21214;21215;21216 14085;14086;14087;14088 14086 4 LQQAAQQHIQQQLLAK Unmodified 1845.0221 0.022079431 1601 Q9UKJ3;Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 108.23 101.06 3 0.012292 3 68959 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.682 23.76 6840900 1629900 1058300 1254300 586900 0 2311500 4799 1601 4746 21217;21218;21219;21220;21221 14089;14090;14091 14089 3 LQQAQEMLK Unmodified 1087.5696 0.56957969 907 P40222 TXLNA Alpha-taxilin yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 85.875 78.455 2 0.0060612 2 53934 20150910_Q1_SA_NiHu_Masterprac_group10_B 93.667 37.235 10070000 0 961370 952930 545320 3556000 4054600 4800 907 4747 21222;21223;21224;21225;21226 14092;14093 14093 2 LQQESTFLFHGNKTEDTPDK Unmodified 2334.1128 0.11280451 1603 Q9UKX7-2;Q9UKX7 NUP50 Nuclear pore complex protein Nup50 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 111.36 105.6 4 0.0050115 1 69553 20150910_Q1_SA_NiHu_Masterprac_group10_B 45.82 45.82 4985600 0 1963400 1200000 348550 0 1473700 4801 1603 4748 21227;21228;21229;21230 14094 14094 1 LQQLGEAHQAETEVLRR Unmodified 1977.0392 0.039186058 1121 Q14980-2;Q14980;F5H4J1 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 2 1 2 2 114.34 105.4 3;4 0.0053647 2 74706 20150910_Q1_SA_NiHu_Masterprac_group15_C 43.05 26.125 13717000 0 4957100 1359300 0 3311400 4089200 4802 1121 4749 21231;21232;21233;21234;21235;21236;21237 14095;14096 14096 2 LQQLLQR Unmodified 897.5396 0.53960019 1384 Q96EU6-2;Q96EU6 RRP36 Ribosomal RNA processing protein 36 homolog no no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 82.741 80.709 2 0.017928 1 55409 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.163 6.1344 2279500 0 838420 0 0 0 1441100 4803 1384 4750 21238;21239 14097 14097 0 LQQLQNQIR Unmodified 1139.6411 0.64110515 1343 Q8WX93-3;Q8WX93 PALLD Palladin yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 80.047 78.065 2 0.0086689 2 53742 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.582 49.282 2916200 0 895350 0 0 0 2020800 4804 1343 4751 21240;21241 14098;14099 14098 2 LQQLWLK Unmodified 927.55419 0.55418762 1525;1139 Q9NPC8;Q15475 SIX2;SIX1 Homeobox protein SIX2;Homeobox protein SIX1 no no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 132.67 122.47 2 8.8268E-73 4 87592 20150910_Q1_SA_NiHu_Masterprac_group15_B 158.38 35.4 112350000 0 0 14989000 12358000 10674000 74325000 4805 1525;1139 4752 21242;21243;21244;21245;21246 14100;14101;14102;14103 14101 4 LQQMQAESGFVQHVGFK Unmodified 1932.9516 0.9516166 1290 Q8IYH5-2;Q8IYH5;Q8IYH5-3 ZZZ3 ZZ-type zinc finger-containing protein 3 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 132.22 132.22 3 0.037329 1 85209 20150910_Q1_SA_NiHu_Masterprac_group13_B 48.391 26.589 2547100 0 0 0 2547100 0 0 4806 1290 4753 21247 14104 14104 0 LQQQAALSPTTAPAVSSVSK Unmodified 1983.0637 0.063669474 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 2 2 124.87 114.57 2;3 4.0456E-82 4 80859 20150910_Q1_SA_NiHu_Masterprac_group13_C 127.37 99.334 44361000 2149500 7062600 30592000 0 0 4556700 4807 1344 4754 21248;21249;21250;21251;21252;21253 14105;14106;14107;14108 14105 2 LQQQQRPEDAEDGAEGGGK Unmodified 2011.9195 0.91952443 1050 Q08J23-2;Q08J23;D6RAS3 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 47.54 41.95 3 0.00060744 3 34089 20150910_Q1_SA_NiHu_Masterprac_group13_C 64.327 50.327 6811600 132470 796570 1291800 801930 976660 2812100 4808 1050 4755 21254;21255;21256;21257;21258;21259 14109;14110;14111 14109 3 LQQTTQLIK Unmodified 1071.6288 0.62880913 1546 Q9NUQ3;Q9NUQ3-2 TXLNG Gamma-taxilin yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 88.843 81.148 2 0.040191 1 55638 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.931 11.971 9373400 987350 1183300 624940 618270 3090000 2869500 4809 1546 4756 21260;21261;21262;21263;21264;21265 14112 14112 1 LQQTTQLIKEADEK Unmodified 1643.873 0.87301516 1546 Q9NUQ3;Q9NUQ3-2 TXLNG Gamma-taxilin yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 1 104.33 94.658 3 0.0055299 2 63330 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.98 26.617 11975000 2229600 1496600 2756000 1268900 1406200 2817400 4810 1546 4757 21266;21267;21268;21269;21270;21271;21272 14113;14114 14114 2 LQQTYAALNSK Unmodified 1235.651 0.65100113 929 P46940;H0YLE8 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 85.463 77.885 2 6.5427E-08 6 53698 20150910_Q1_SA_NiHu_Masterprac_group15_B 109.72 52.547 64393000 5684400 5645200 9516200 10172000 12882000 20493000 4811 929 4758 21273;21274;21275;21276;21277;21278 14115;14116;14117;14118;14119;14120 14117 6 LQRAALKNPVK Unmodified 1236.7666 0.76664001 1481 Q9H0S4;G5E955;F5H1N9 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 60.219 53.742 3 0.0099651 4 44218 20150910_Q1_SA_NiHu_Masterprac_group13_C 83.862 62.49 32698000 0 5756000 9953700 4127500 6201000 6659700 4812 1481 4759 21279;21280;21281;21282;21283 14121;14122;14123;14124 14122 4 LQRAPLKSVGPDFGK Unmodified 1611.9097 0.90967544 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 104.25 94.928 4 0.0023339 1 70638 20150910_Q1_SA_NiHu_Masterprac_group13_C 58.885 25.953 5594800 0 0 1517700 1420400 269440 2387300 4813 1012 4760 21284;21285;21286;21287 14125 14125 1 LQRNENRDISEVIALGVPNPR Unmodified 2389.2826 0.28260423 583 Q13573;G3V3A4;G3V4X8 SNW1 SNW domain-containing protein 1 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 133.27 132.66 4 0.00010928 1 86284 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.682 65.733 12271000 0 12271000 0 0 0 0 4814 583 4761 21288 14126 14126 0 LQSFDSPERK Unmodified 1205.6041 0.60405094 431 Q86SS3;E9PGM9;P78332;B4DNY1 RBM6 RNA-binding protein 6 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 60.078 55.465 3 0.00441 2 39338 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.029 52.478 3513900 0 926940 748630 819360 0 1018900 4815 431 4762 21289;21290;21291;21292 14127;14128 14128 2 LQSGVNTLQGFKEDK Unmodified 1662.8577 0.85769944 1529 Q9NPI1;Q9NPI1-2 BRD7 Bromodomain-containing protein 7 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 109.11 101.59 3 0.00077584 1 69314 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.985 49.771 2736500 0 844200 586010 0 0 1306300 4816 1529 4763 21293;21294;21295 14129 14129 1 LQSVQALTEIQEFISFISK Unmodified 2180.1729 0.17288557 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 134.6 129.64 2 0 1 89900 20150910_Q1_SA_NiHu_Masterprac_group15_B 229.75 215.77 34684000 0 0 0 0 0 34684000 4817 1012 4764 21296 14130 14130 1 LQTFLSK Unmodified 835.48035 0.48035398 1059 Q12789-3;Q12789;H7BYG6;H3BU55 GTF3C1 General transcription factor 3C polypeptide 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 100.24 97.281 2 0.023905 1 66216 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.323 16.41 5030600 0 0 0 0 0 5030600 4818 1059 4765 21297 14131 14131 1 LQTLSPALKAPEK Unmodified 1394.8133 0.81331543 1080 Q13415 ORC1 Origin recognition complex subunit 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 102.4 100.06 3 0.0014536 2 66281 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.589 41.621 3558600 0 1590500 0 0 0 1968100 4819 1080 4766 21298;21299 14132;14133 14133 2 LQTPNTFPK Unmodified 1044.5604 0.56039521 1120 Q14978;Q14978-3;Q14978-2 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 105.39 93.126 2 1.9031E-06 4 63612 20150910_Q1_SA_NiHu_Masterprac_group15_B 113.66 71.31 29708000 0 0 1462200 0 2424800 25821000 4820 1120 4767 21300;21301;21302 14134;14135;14136;14137 14135 4 LQVSQTEPAK Unmodified 1099.5873 0.58733824 1422 Q96T58 SPEN Msx2-interacting protein yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 59.207 52.809 2 0.01037 4 37701 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.499 27.498 5359300 0 775200 846890 714690 1155100 1867400 4821 1422 4768 21303;21304;21305;21306;21307 14138;14139;14140;14141 14139 4 LQVVLNESNADTYAGRPLPSK Unmodified 2271.1859 0.18590988 23 A6NHR9;A6NHR9-2 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 131.53 128.75 3 0.020373 2 84129 20150910_Q1_SA_NiHu_Masterprac_group10_B 36.053 17.352 28942000 0 14223000 0 0 0 14718000 4822 23 4769 21308;21309 14142;14143 14143 1 LRAILQNQGN Unmodified 1125.6255 0.62545508 56 B0QYD2;Q9UH17;P31941-2;P31941 APOBEC3B;APOBEC3A DNA dC->dU-editing enzyme APOBEC-3B;DNA dC->dU-editing enzyme APOBEC-3A yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 79.592 77.61 2 1.3495E-23 1 53287 20150910_Q1_SA_NiHu_Masterprac_group10_B 128.86 109.9 7504700 0 4209400 0 0 0 3295300 4823 56 4770 21310;21311 14144 14144 1 LRDAFSAQMVK Unmodified 1264.6598 0.65979168 1404 Q96L73-2;Q96L73-3;Q96L73 NSD1 Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 108.81 98.387 3 0.0057495 2 67077 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.268 39.982 2133400 0 0 371720 0 0 1761700 4824 1404 4771 21312;21313 14145;14146 14146 2 LRDCMSEMHR Oxidation (M) 1349.5639 0.56385916 35 F8WBL8;A8K0A6;C9J3Q2;B7Z8Q9;G5E9X4;Q9UI32 GLS2 Glutaminase liver isoform, mitochondrial yes no 0 1 1 By matching By matching By MS/MS By matching By matching By matching 1 94.753 77.961 2 0.0214 1 60486 20150910_Q1_SA_NiHu_Masterprac_group13_C 61.161 34.629 0 0 0 0 0 0 0 4825 35 4772 21314 14147 14147 6 1 LREDENAEPVGTTYQK Unmodified 1848.8854 0.88537076 47 Q16643;Q16643-2;A8MV58;D6R9W4 DBN1 Drebrin yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 75.776 68.314 3 0.0014337 2 54588 20150910_Q1_SA_NiHu_Masterprac_group13_C 69.331 69.331 13452000 1547500 2055700 2974700 1366500 1588800 3918700 4826 47 4773 21315;21316;21317;21318;21319;21320 14148;14149 14148 2 LREEGKVIEPLK Unmodified 1409.8242 0.82421447 129 F8W720;B4DUT7;P49915 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 2 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 84.524 77.124 3 0.00013984 4 58283 20150910_Q1_SA_NiHu_Masterprac_group15_C 100.02 35.195 16224000 0 2904900 3128300 1353900 2697400 6139500 4827 129 4774 21321;21322;21323;21324;21325 14150;14151;14152;14153 14152 4 LRELDPSLVSANDSPSGMQTR Unmodified 2272.1118 0.11175865 1201 Q5UIP0-2;Q5UIP0;H7C2B5 RIF1 Telomere-associated protein RIF1 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 131.26 125.37 3 9.6155E-160 4 83655 20150910_Q1_SA_NiHu_Masterprac_group10_B 148.75 107.05 30135000 0 9666300 6486200 4701200 0 9281600 4828 1201 4775 21326;21327;21328;21329 14154;14155;14156;14157 14157 3 LRENVFQEHQTLKEK Unmodified 1898.001 0.0010096381 1104 Q14247;Q14247-3;Q14247-2;H7C314 CTTN Src substrate cortactin yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 84.374 75.149 4 0.014814 1 58904 20150910_Q1_SA_NiHu_Masterprac_group13_C 44.132 29.568 7599700 0 2307000 1825800 0 1343000 2123900 4829 1104 4776 21330;21331;21332;21333 14158 14158 1 LRESTPGDSPSTVNK Unmodified 1586.79 0.79001381 4 A2A306;E7EWG4;A6NCA8;F5H2U4;F5H2C8;Q5T6F2 UBAP2 Ubiquitin-associated protein 2 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 54.584 48.392 3 0.0017107 4 33791 20150910_Q1_SA_NiHu_Masterprac_group13_B 68.168 43.753 6184900 823470 1467000 1137500 532440 877390 1347200 4830 4 4777 21334;21335;21336;21337;21338;21339 14159;14160;14161;14162 14160 4 LRGISTKPVYIPEVELNHK Unmodified 2192.2317 0.23173786 1105 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 131.61 129.13 4 0.00031177 2 86705 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.676 62.43 26831000 0 0 0 4410100 0 22420000 4831 1105 4778 21340;21341 14163;14164 14164 2 LRIEHQTITTPSKK Unmodified 1650.9417 0.94170385 270 C9JU95;P40938 RFC3 Replication factor C subunit 3 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 64.137 62.983 4 0.012038 1 44113 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.351 31.211 2072400 0 0 0 0 0 2072400 4832 270 4779 21342 14165 14165 1 LRITESEEVVSR Unmodified 1416.7573 0.75725712 783 P02545;P02545-3;Q6UYC3;P02545-2;Q3BDU5;Q5TCJ4 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 94.512 92.705 3 0.0038319 1 62381 20150910_Q1_SA_NiHu_Masterprac_group10_B 67.997 31.997 1089500 0 1089500 0 0 0 0 4833 783 4780 21343 14166 14166 1 LRLGSGSNGLLR Unmodified 1241.7204 0.7204181 115 B4DQ42;Q9HC62;E7ENF4;H7C1A0 SENP2 Sentrin-specific protease 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 110.28 106.51 3 0.0021825 1 72889 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.819 49.108 1604300 0 0 0 0 0 1604300 4834 115 4781 21344 14167 14167 1 LRLLQAETASNSAR Unmodified 1528.8322 0.8321534 1121 Q14980-2;Q14980;F5H2L0;H0YFY6 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 101.24 93.096 3 0.0011271 6 69646 20150910_Q1_SA_NiHu_Masterprac_group13_C 77.24 63.2 25448000 2700300 4251100 3205300 1292200 3324400 10675000 4835 1121 4782 21345;21346;21347;21348;21349;21350 14168;14169;14170;14171;14172;14173 14169 6 LRLQAQSLSTVGPR Unmodified 1524.8736 0.87362428 713 O43290;G3V1T2 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 120.9 113.81 3 0.0011289 2 75249 20150910_Q1_SA_NiHu_Masterprac_group10_C 72.209 60.288 4311300 1363400 1294200 0 0 0 1653600 4836 713 4783 21351;21352;21353 14174;14175 14175 2 LRNTPYQAPVRR Unmodified 1469.8215 0.82152913 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 59.858 54.624 3 0.017186 1 38858 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.864 44.764 6889700 788020 459500 0 661950 2515700 2464500 4837 531 4784 21354;21355;21356;21357;21358 14176 14176 1 LRPFVDGTAGASDPPCVR Unmodified 1913.9418 0.9417802 1115 Q14807;H3BQB9 KIF22 Kinesin-like protein KIF22 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 124.73 116.51 3 6.9885E-14 3 79473 20150910_Q1_SA_NiHu_Masterprac_group15_C 98.077 71.868 50929000 0 5936300 12223000 1337300 16160000 15273000 4838 1115 4785 21359;21360;21361;21362;21363 14177;14178;14179 14179 3 LRPGALGGAADVEDTK Unmodified 1568.8158 0.81583463 591 G5E960;Q01970 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 97.477 89.804 3 0.0020729 5 61553 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.658 36.583 4633700 1188900 855610 0 0 816460 1772700 4839 591 4786 21364;21365;21366;21367 14180;14181;14182;14183;14184 14181 5 LRPTVTNDRSAPIIR Unmodified 1707.9744 0.97440096 1595 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 94.161 86.601 4 0.006465 1 59311 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.088 41.538 8713100 0 898790 1323200 747030 1941700 3802500 4840 1595 4787 21368;21369;21370;21371;21372 14185 14185 1 LRPVPPYQHEEIIGK Unmodified 1774.973 0.97300397 1195 Q5T7W0-2;Q5T7W0 ZNF618 Zinc finger protein 618 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 109.68 102.52 3 1.7316E-30 1 70153 20150910_Q1_SA_NiHu_Masterprac_group15_B 115.83 93.477 6374900 514070 1427300 0 771800 439710 3222000 4841 1195 4788 21373;21374;21375;21376;21377 14186 14186 1 LRQEEPQSLQAAVR Unmodified 1623.8693 0.86926718 408 H3BT29;H3BUJ5;P29590-14;P29590-10;E9PBR7;P29590-4;H3BT57;P29590-12;P29590-2;P29590-5;P29590-9;P29590-13;P29590-3;P29590-8;P29590-11;H2N333;P29590;H3BVD2 PML Protein PML yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 97.26 87.685 3 0.039271 1 60155 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.629 15.812 1516400 0 0 254010 0 0 1262400 4842 408 4789 21378;21379 14187 14187 1 LRQENMELAER Unmodified 1387.6878 0.68779734 907 P40222 TXLNA Alpha-taxilin yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 86.115 70.173 2 0.026071 1 54125 20150910_Q1_SA_NiHu_Masterprac_group15_C 64.827 31.285 1293600 0 0 0 0 1293600 0 4843 907 4790 21380 14188 14188 1 LRQQDLDGELR Unmodified 1341.7001 0.70007659 1423 Q99459 CDC5L Cell division cycle 5-like protein yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 90.001 82.706 3 0.019478 1 56689 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.414 28.983 4299400 712920 1225000 0 0 966820 1394700 4844 1423 4791 21381;21382;21383;21384 14189 14189 1 LRSDAGLESDTAMK Unmodified 1492.7192 0.71915705 1534 Q9NR30;Q3SWU7 DDX21 Nucleolar RNA helicase 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 80.214 72.628 2;3 0.0010162 8 51396 20150910_Q1_SA_NiHu_Masterprac_group10_C 85.493 63.438 71040000 17236000 9024200 3776400 5105000 24523000 11376000 4845 1534 4792 21385;21386;21387;21388;21389;21390;21391;21392;21393;21394;21395;21396;21397 14190;14191;14192;14193;14194;14195;14196;14197 14197 8 LRSDAGLESDTAMK Oxidation (M) 1508.7141 0.71407167 1534 Q9NR30;Q3SWU7 DDX21 Nucleolar RNA helicase 2 yes no 0 1 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 59.071 52.679 3 0.018435 2 37636 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.853 52.276 7207600 973790 1537800 0 0 2872300 1823700 4846 1534 4792 21398;21399;21400;21401 14198;14199 14198 174 2 LRSDCESQECVTK Unmodified 1610.7029 0.70285506 1541 Q9NS86 LANCL2 LanC-like protein 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 42.625 37.486 3 0.0016255 5 27574 20150910_Q1_SA_NiHu_Masterprac_group10_C 80.371 55.441 10311000 763570 873170 1524500 708320 1760200 4681300 4847 1541 4793 21402;21403;21404;21405;21406;21407 14200;14201;14202;14203;14204 14204 5 LRSQDSMSSDTAR Unmodified 1452.6627 0.66270481 873 P25205;Q7Z6P5;E9PF11 MCM3 DNA replication licensing factor MCM3 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 39.04 33.274 3 0.015255 1 26762 20150910_Q1_SA_NiHu_Masterprac_group13_C 51.643 35.779 3018400 0 1017600 1644200 0 163970 192570 4848 873 4794 21408;21409;21410;21411 14205 14205 1 LRSQDSMSSDTARTSPVTAR Unmodified 2165.0495 0.049492748 873 P25205;Q7Z6P5;E9PF11 MCM3 DNA replication licensing factor MCM3 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 72.879 63.904 4 0.0001291 2 51718 20150910_Q1_SA_NiHu_Masterprac_group13_C 65.924 46.48 8953400 0 2224500 1788200 0 2099900 2840900 4849 873 4795 21412;21413;21414;21415 14206;14207 14206 2 LRSRPQGLTEAEQR Unmodified 1639.8754 0.87541519 1021 Q00653-3;Q00653-4;Q00653 NFKB2 Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 57.738 51.44 4 0.004041 1 42101 20150910_Q1_SA_NiHu_Masterprac_group15_C 57.52 22.56 4094400 0 732740 659460 430770 1101600 1169800 4850 1021 4796 21416;21417;21418;21419;21420 14208 14208 1 LRSTNLDASENTGNKQDDK Unmodified 2104.9985 0.99850304 1345 Q8WYP5;Q8WYP5-3;Q8WYP5-2 AHCTF1 Protein ELYS yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 2 2 2 2 47.556 42.116 3;4 0.0021708 2 29924 20150910_Q1_SA_NiHu_Masterprac_group10_B 51.127 34.77 7482300 1283500 1902400 0 0 1947800 2348600 4851 1345 4797 21421;21422;21423;21424;21425;21426;21427;21428 14209;14210 14210 2 LRSVVTPARVQFK Unmodified 1499.8936 0.89363144 435 Q5QPQ0;E9PH41;O95372 LYPLA2 Acyl-protein thioesterase 2 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 105.71 97.753 3 0.0025272 2 72096 20150910_Q1_SA_NiHu_Masterprac_group13_C 83.137 36.258 14348000 0 4255500 1371100 647410 3013100 5061100 4852 435 4798 21429;21430;21431;21432;21433 14211;14212 14211 1 LRTAGTICLETFK Unmodified 1508.8021 0.80209882 642 H3BR35;P15170;P15170-2;F5GWG9;Q8IYD1 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 131.25 131.25 3 1.7953E-07 2 83923 20150910_Q1_SA_NiHu_Masterprac_group10_B 92.295 37.034 6946000 0 0 0 6946000 0 0 4853 642 4799 21434;21435 14213;14214 14214 2 LRTAPGMGDQSGCYR Unmodified 1667.7508 0.75080831 1457 Q9BWF3;E9PB51;Q9BQ04;B0LM41 RBM4;RBM4B;RBM14 RNA-binding protein 4;RNA-binding protein 4B;RNA-binding protein 14 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 1 1 78.491 70.478 3 0.0026244 3 49123 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.104 52.257 8685500 350770 1859100 1824000 0 1079500 3572100 4854 1457 4800 21436;21437;21438;21439;21440;21441 14215;14216;14217 14217 3 LRTAPGMGDQSGCYRCGK Unmodified 2012.8979 0.89788325 1457 Q9BWF3;Q9BQ04;B0LM41 RBM4;RBM4B;RBM14 RNA-binding protein 4;RNA-binding protein 4B;RNA-binding protein 14 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 2 1 2 2 71.329 62.813 3;4 0.0016883 4 50933 20150910_Q1_SA_NiHu_Masterprac_group13_C 53.861 43.655 12737000 479930 1692300 4633500 1394000 1382100 3155600 4855 1457 4801 21442;21443;21444;21445;21446;21447;21448;21449;21450 14218;14219;14220;14221 14218 4 LRVAGVVAPTLPREDLEK Unmodified 1962.1262 0.12621015 922 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 2 132.43 127.47 3;4 0.00052953 2 87398 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.167 55.509 107620000 0 0 0 0 0 107620000 4856 922 4802 21451;21452 14222;14223 14223 2 LRVAYEGSDSEK Unmodified 1352.6572 0.65720872 636 H3BPD5;P78549;H3BRL9;H3BUV2 NTHL1 Endonuclease III-like protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 67.732 60.522 3 0.00017608 3 42672 20150910_Q1_SA_NiHu_Masterprac_group10_B 96.82 58.07 10437000 1318900 1834400 1351800 655000 1481300 3795400 4857 636 4803 21453;21454;21455;21456;21457;21458 14224;14225;14226 14226 3 LRVCEVCSAYLGLHDNDRR Unmodified 2332.1165 0.11646688 186 B7Z500;Q9Y383-2;Q9Y383;B7Z4Q3 LUC7L2;C7orf55 Putative RNA-binding protein Luc7-like 2;UPF0562 protein C7orf55 no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 127.22 124.74 4 0.00052021 1 84471 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.454 55.074 6184900 0 0 0 454690 0 5730200 4858 186 4804 21459;21460 14227 14227 1 LRVLLQEEGTRK Unmodified 1440.8413 0.84126152 840 P15924;P15924-2 DSP Desmoplakin yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 80.358 80.358 3 0.033867 1 54889 20150910_Q1_SA_NiHu_Masterprac_group13_B 58.274 44.031 658530 0 0 0 658530 0 0 4859 840 4805 21461 14228 14228 1 LSAEENPDDSEVPSSSGINSTK Unmodified 2262.0135 0.013543977 1656 Q9Y5Q9-2;Q9Y5Q9 GTF3C3 General transcription factor 3C polypeptide 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 105.41 95.559 2 9.4282E-06 1 65386 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.276 51.03 7505300 0 2532100 1347200 0 1157200 2468700 4860 1656 4806 21462;21463;21464;21465 14229 14229 1 LSALAEAK Unmodified 801.45962 0.45961853 1193 Q5T670;Q7L590-2;Q7L590 MCM10 Protein MCM10 homolog yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 69.954 58.376 2 0.034579 1 47400 20150910_Q1_SA_NiHu_Masterprac_group13_C 69.812 22.237 1002700 223010 0 779640 0 0 0 4861 1193 4807 21466;21467 14230 14230 1 LSASGEDSTIPQASR Unmodified 1517.7322 0.73216458 911 P41182-2;P41182 BCL6 B-cell lymphoma 6 protein yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 86.936 78.187 2 0.0043674 1 58904 20150910_Q1_SA_NiHu_Masterprac_group15_C 54.402 34.725 1028700 0 0 0 0 529020 499630 4862 911 4808 21468;21469 14231 14231 1 LSASGEDSTIPQASRLNNIVNR Unmodified 2341.1986 0.19859983 911 P41182-2;P41182 BCL6 B-cell lymphoma 6 protein yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 131.43 131.43 3 5.4763E-05 2 84448 20150910_Q1_SA_NiHu_Masterprac_group13_B 75.743 57.728 7384600 0 0 0 7384600 0 0 4863 911 4809 21470;21471 14232;14233 14232 1 LSASTASELSPKSK Unmodified 1404.746 0.74602373 1165 Q3KQU3-2;Q3KQU3-4;Q3KQU3;H0YF21 MAP7D1 MAP7 domain-containing protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 76.705 71.942 3 0.019197 1 49745 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.722 23.171 1068200 262080 0 0 0 0 806070 4864 1165 4810 21472;21473 14234 14234 1 LSCMANSVIK Unmodified 1121.5573 0.55730044 1201 Q5UIP0-2;Q5UIP0;H7C2B5 RIF1 Telomere-associated protein RIF1 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 101.89 95.334 2 6.2851E-09 5 65046 20150910_Q1_SA_NiHu_Masterprac_group15_B 114.89 81.703 15498000 1793800 4193000 0 1937200 609110 6965400 4865 1201 4811 21474;21475;21476;21477;21478;21479 14235;14236;14237;14238;14239 14236 5 LSCSCISWNPSSSR Unmodified 1639.7083 0.70827479 1380 Q96EE3;Q96EE3-1 SEH1L Nucleoporin SEH1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 124.46 119.7 2 0.01738 1 81168 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.318 34.947 534080 0 0 0 0 0 534080 4866 1380 4812 21480 14240 14240 1 LSCSTWNYQK Unmodified 1285.5761 0.57612163 1331 Q8NI36;D6R922 WDR36 WD repeat-containing protein 36 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 95.982 88.053 2 0.0018419 5 60168 20150910_Q1_SA_NiHu_Masterprac_group15_B 102.95 59.658 34118000 2062200 4943600 9561100 2695500 5723800 9132100 4867 1331 4813 21481;21482;21483;21484;21485;21486 14241;14242;14243;14244;14245 14243 5 LSDLQKEAEK Unmodified 1159.6085 0.60846762 1025 Q01082-3;Q01082-2;Q01082 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 107.79 90.947 2 0.010951 1 66587 20150910_Q1_SA_NiHu_Masterprac_group15_C 88.134 9.0637 17271000 0 0 0 0 17271000 0 4868 1025 4814 21487 14246 14246 1 LSDLSTEDDDSGHCK Unmodified 1677.6788 0.67880838 137 Q5BJF6-8;Q5BJF6-5;Q5BJF6-6;B4DX73;Q5BJF6-7;Q5BJF6-2;Q5BJF6-3;Q5BJF6-4;Q5BJF6;Q5T4C2;Q5T4C8;Q5T4C7 ODF2 Outer dense fiber protein 2 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 56.189 49.881 3 4.5367E-06 3 35033 20150910_Q1_SA_NiHu_Masterprac_group13_B 83.877 81.854 4007700 253530 630110 702570 460210 610840 1350500 4869 137 4815 21488;21489;21490;21491;21492;21493 14247;14248;14249 14247 2 LSDNFQDSEQLVEK Unmodified 1650.7737 0.77369504 230 C9J5X9;Q8NB91 FANCB Fanconi anemia group B protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 129.79 124.83 2 3.123E-29 1 84558 20150910_Q1_SA_NiHu_Masterprac_group15_B 108.66 78.082 0 0 0 0 0 0 0 4870 230 4816 21494 14250 14250 1 LSDNPAWEGDKGNTK Unmodified 1630.7587 0.75871368 38 Q9BY42;A8MSH5;A2A2L5;A2A2L6 RTFDC1 Protein RTF2 homolog yes no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 1 2 73.151 65.948 2;3 2.0497E-05 5 45920 20150910_Q1_SA_NiHu_Masterprac_group13_B 89.747 67.398 23038000 1410100 3437800 3812700 1079900 3573900 9723700 4871 38 4817 21495;21496;21497;21498;21499;21500;21501;21502;21503 14251;14252;14253;14254;14255 14251 5 LSDSNKENALHSYSTQK Unmodified 1920.9177 0.91773352 477 H0Y5J9;F2Z2W0;Q9H2D6-5;F8W6V6;Q9H2D6-3;Q9H2D6-2;Q9H2D6;F6WYE2;F6TR96 TRIOBP TRIO and F-actin-binding protein yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 62.629 56.394 4 0.033931 1 45499 20150910_Q1_SA_NiHu_Masterprac_group15_C 37.182 20.66 2424700 0 449760 0 0 1073900 901080 4872 477 4818 21504;21505;21506 14256 14256 1 LSDVDANTAIK Unmodified 1145.5928 0.59281755 1063 Q12888;Q12888-2;A6NNK5;F8VY86;C9JXV0 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 84.601 77.221 2 0.0022504 1 53213 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.338 35.612 6003300 0 1189200 642380 337840 1099600 2734300 4873 1063 4819 21507;21508;21509;21510;21511 14257 14257 1 LSDVDANTAIKHEEQSNEDIPIAEQSSK Unmodified 3067.4582 0.45818115 1063 Q12888;Q12888-2;A6NNK5;F8VY86;C9JXV0 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 2 1 129.35 128.95 3;4 0.0034771 3 82366 20150910_Q1_SA_NiHu_Masterprac_group10_B 35.23 26.986 6031900 0 4380500 0 1651400 0 0 4874 1063 4820 21512;21513;21514 14258;14259;14260 14259 3 LSEEAECPNPSTPSK Unmodified 1644.7301 0.73011567 756 O94804 STK10 Serine/threonine-protein kinase 10 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 65.094 63.94 2 0.016146 1 44720 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.312 37.691 540030 0 0 0 0 0 540030 4875 756 4821 21515 14261 14261 1 LSEIVREFK Unmodified 1119.6288 0.62880913 500 F5GZI1;O60264;F6TQG2;P28370-2;P28370 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 104.56 101.3 2 0.03517 2 69128 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.489 12.921 907690 0 0 0 0 0 907690 4876 500 4822 21516 14262;14263 14263 2 LSEVEEAQEASMETDPKP Unmodified 1988.8885 0.8884668 1221 Q6I9Y2 THOC7 THO complex subunit 7 homolog yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 128.45 118.17 2 0 3 76750 20150910_Q1_SA_NiHu_Masterprac_group10_C 195.25 175.97 5099200 4056200 0 0 0 0 1042900 4877 1221 4823 21517;21518 14264;14265;14266 14265 2 LSEVQASEAEMR Unmodified 1348.6293 0.62927941 1288 Q8IY37 DHX37 Probable ATP-dependent RNA helicase DHX37 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 93.889 86.368 2 0.012922 1 59041 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.569 35.02 2307700 176790 568100 0 0 320140 1242700 4878 1288 4824 21519;21520;21521;21522 14267 14267 1 LSFNPTQLEEQCHI Unmodified 1714.7985 0.79847001 292 CON__P02754 yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 135.89 119.13 2 0 2 82593 20150910_Q1_SA_NiHu_Masterprac_group15_C 217.68 185.25 1365100000 24454000 0 0 0 1340700000 0 + 4879 292 4825 21523;21524 14268;14269 14268 2 LSFQCCECGK Unmodified 1287.5046 0.50461295 1397 Q96IT1;Q96IT1-2 ZNF496 Zinc finger protein 496 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 81.105 79.649 2 0.010835 1 54812 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.289 57.595 632860 0 0 0 0 0 632860 4880 1397 4826 21525 14270 14270 1 LSFYETGEIPRK Unmodified 1438.7456 0.7456298 692 O00567;H0YDU4;H0Y653;E9PDI8 NOP56 Nucleolar protein 56 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 122.58 119.89 3 0.0012603 2 81512 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.611 56.034 4847000 0 1230900 0 0 0 3616000 4881 692 4827 21526;21527 14271;14272 14271 2 LSGDQPAARTPR Unmodified 1267.6633 0.66329715 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 44.065 38.759 3 0.013201 1 27421 20150910_Q1_SA_NiHu_Masterprac_group10_B 56.548 36.164 23029000 4664500 1967700 2253100 2307800 7958300 3877300 4882 383;1082 4828 21528;21529;21530;21531;21532;21533 14273 14273 1 LSGGPLANGENSNLSR Unmodified 1584.7856 0.78559713 1205 Q5VUA4 ZNF318 Zinc finger protein 318 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 95.603 93.246 2 0.037654 1 63709 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.797 56.978 0 0 0 0 0 0 0 4883 1205 4829 21534 14274 14274 1 LSGKPQNAPEGYQNRLK Unmodified 1898.9963 0.99625861 157 B4E1H5;Q12834 CDC20 Cell division cycle protein 20 homolog yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 72.059 66.314 4 0.0020881 4 53432 20150910_Q1_SA_NiHu_Masterprac_group13_C 53.491 20.186 6330600 713720 1039100 1145200 906690 0 2525900 4884 157 4830 21535;21536;21537;21538;21539 14275;14276;14277;14278 14275 4 LSGLEQPQGALQTR Unmodified 1496.7947 0.79470526 470 H0YFP2;E9PS41;Q6RFH5-2;Q6RFH5 WDR74 WD repeat-containing protein 74 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 116.67 107.45 2 6.8747E-42 4 73445 20150910_Q1_SA_NiHu_Masterprac_group15_B 121.92 79.126 9451300 1823600 672660 682050 1563500 1856400 2853100 4885 470 4831 21540;21541;21542;21543;21544;21545 14279;14280;14281;14282 14279 3 LSHEDDHILEDAGSSDISSDAACTNPNK Unmodified 2997.2894 0.28940126 1353 Q92576-2;Q92576;E7EVH3;E9PE34;B3KP41;D6R9X2 PHF3 PHD finger protein 3 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 120.62 113.53 4 2.3726E-19 3 75393 20150910_Q1_SA_NiHu_Masterprac_group10_C 73.649 69.185 9635700 2755500 2093500 0 0 0 4786700 4886 1353 4832 21546;21547;21548 14283;14284;14285 14285 3 LSHSDEKPFECPICNQR Unmodified 2115.9466 0.94660758 1094 Q14119 VEZF1 Vascular endothelial zinc finger 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 94.177 86.298 3;4 1.6432E-07 11 65494 20150910_Q1_SA_NiHu_Masterprac_group13_C 89.911 59.974 205960000 35755000 23806000 9885500 30967000 58234000 47312000 4887 1094 4833 21549;21550;21551;21552;21553;21554;21555;21556;21557;21558;21559;21560 14286;14287;14288;14289;14290;14291;14292;14293;14294;14295;14296 14287 11 LSHSDEKPFECPICNQRFK Unmodified 2391.11 0.10998452 1094 Q14119 VEZF1 Vascular endothelial zinc finger 1 yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 107.3 98.879 4;5 5.822E-06 7 67478 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.195 75.534 56156000 4352300 6752000 8789800 11455000 12560000 12247000 4888 1094 4834 21561;21562;21563;21564;21565;21566;21567;21568;21569;21570;21571 14297;14298;14299;14300;14301;14302;14303 14299 7 LSHSDEKPYQCPVCQQR Unmodified 2130.9575 0.95750662 219 C6G496;P56270;G5E927;I3L2Z5;F5H7A6 MAZ Myc-associated zinc finger protein yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 3 64.675 58.166 3;4 1.6081E-07 9 46598 20150910_Q1_SA_NiHu_Masterprac_group15_C 89.911 82.871 206410000 10235000 19136000 27810000 21274000 72455000 55500000 4889 219 4835 21572;21573;21574;21575;21576;21577;21578;21579;21580;21581;21582;21583 14304;14305;14306;14307;14308;14309;14310;14311;14312 14311 9 LSHSDEKPYQCPVCQQRFK Unmodified 2406.1209 0.12088355 219 C6G496;P56270;G5E927;I3L2Z5;F5H7A6 MAZ Myc-associated zinc finger protein yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 3 2 81.649 74.273 3;4;5 0.00029198 8 51861 20150910_Q1_SA_NiHu_Masterprac_group10_C 80.361 67.426 78888000 19885000 7660100 8343500 16148000 16539000 10311000 4890 219 4836 21584;21585;21586;21587;21588;21589;21590;21591;21592;21593;21594;21595;21596;21597;21598;21599 14313;14314;14315;14316;14317;14318;14319;14320 14320 8 LSHSGEKPYSCPVCGLR Unmodified 1945.9139 0.91385089 1517 Q9HBE1-3;Q9HBE1;Q9HBE1-2;Q9HBE1-4 PATZ1 POZ-, AT hook-, and zinc finger-containing protein 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 89.774 80.56 4 0.030744 2 55428 20150910_Q1_SA_NiHu_Masterprac_group15_B 27.983 11.62 10642000 903570 615380 1093900 0 2736200 5293100 4891 1517 4837 21600;21601;21602;21603;21604 14321;14322 14321 0 LSIGQQNGGLRSEK Unmodified 1485.79 0.78995423 618 H0YET3;Q14207 NPAT Protein NPAT yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 79.362 71.834 3 0.0078671 2 55222 20150910_Q1_SA_NiHu_Masterprac_group15_C 52.821 31.041 7524800 933240 1066000 2295500 914610 924610 1390900 4892 618 4838 21605;21606;21607;21608;21609;21610 14323;14324 14324 2 LSIVPVRR Unmodified 938.60253 0.6025348 839 P15880;H0YEN5;E9PMM9;I3L404;E9PM36;E9PPT0 RPS2 40S ribosomal protein S2 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 98.322 88.448 2 0.0002149 1 60547 20150910_Q1_SA_NiHu_Masterprac_group10_C 116.37 39.089 2268800 2268800 0 0 0 0 0 4893 839 4839 21611 14325 14325 1 LSLALSPR Unmodified 855.5178 0.51780212 622 H0YIQ6;H0YHU6 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 1 2 2 102.11 93.199 1;2 0.0024577 14 62936 20150910_Q1_SA_NiHu_Masterprac_group13_B 110.81 37.191 7929600000 1663500000 1113400000 1029500000 1455700000 641950000 2025600000 4894 622 4840 21612;21613;21614;21615;21616;21617;21618;21619;21620;21621 14326;14327;14328;14329;14330;14331;14332;14333;14334;14335;14336;14337;14338;14339 14327 14 LSLDDVQK Unmodified 916.48656 0.48656157 1222 Q6KC79-2;Q6KC79;Q6KC79-3 NIPBL Nipped-B-like protein yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 2 1 1 1 1 1 98.429 90.107 2 0.019657 2 61610 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.165 6.5008 24392000 6114700 6214800 2392100 1937400 3364600 4368800 4895 1222 4841 21622;21623;21624;21625;21626;21627;21628 14340;14341 14340 2 LSLEGDHSTPPSAYGSVK Unmodified 1843.8952 0.89520716 626 H0YKS4;H0YMD0;H0YMU9;H0YN42;P07355;H0YKV8;H0YKL9;H0YKZ7;H0YLV6;H0YMT9;H0YKX9;H0YMM1;A6NMY6;P07355-2;H0YNB8;H0YMD9;H0YKN4;H0YMW4 ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 115.43 105.2 3 0.00057178 7 70890 20150910_Q1_SA_NiHu_Masterprac_group10_C 69.805 50.535 25095000 3580000 9541500 6556300 2904800 2512400 0 4896 626 4842 21629;21630;21631;21632;21633;21634 14342;14343;14344;14345;14346;14347;14348 14348 7 LSLGTYASLHGR Unmodified 1273.6779 0.67788459 107 F8VQE1;Q9UHB6-2;B4DN52;Q9UHB6;Q9UHB6-4;F8VS07;Q9UHB6-3 LIMA1 LIM domain and actin-binding protein 1 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 125.17 115 3 0.001509 2 75757 20150910_Q1_SA_NiHu_Masterprac_group10_C 80.871 59.838 5892500 4542300 0 0 0 0 1350200 4897 107 4843 21635;21636 14349;14350 14350 2 LSLITAPR Unmodified 869.53345 0.53345218 1278 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 117.73 115.4 2 0.014111 1 78495 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.355 45.547 1332800 0 0 0 161240 0 1171600 4898 1278 4844 21637;21638 14351 14351 1 LSLMYAR Unmodified 852.45276 0.45275902 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 120.69 111.12 2 5.9082E-44 6 75952 20150910_Q1_SA_NiHu_Masterprac_group15_B 143.37 26.825 75936000 7336300 6314800 14777000 13000000 2077400 32431000 4899 1012 4845 21639;21640;21641;21642;21643;21644 14352;14353;14354;14355;14356;14357 14354 6 LSLQESESK Unmodified 1019.5135 0.5135046 1536 Q9NRL2-2;Q9NRL2;F5H239 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 66.698 58.246 2 0.0071717 3 47038 20150910_Q1_SA_NiHu_Masterprac_group13_C 89.029 56.278 4744300 492740 618010 1602600 0 770160 1260800 4900 1536 4846 21645;21646;21647;21648;21649 14358;14359;14360 14358 3 LSLQQPR Unmodified 840.48175 0.48175096 1357 Q92766-3;Q92766;Q92766-2;C9JU34 RREB1 Ras-responsive element-binding protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 71.328 70.073 2 0.020995 1 48585 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.029 32.525 1327700 0 0 0 0 0 1327700 4901 1357 4847 21650 14361 14361 1 LSLSEGKVKK Unmodified 1087.6601 0.66010926 1168 Q49A26-2;Q49A26;Q49A26-3;Q49A26-4 GLYR1 Putative oxidoreductase GLYR1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 53.35 45.997 2 2.0552E-34 1 38131 20150910_Q1_SA_NiHu_Masterprac_group13_C 136.49 60.836 2464300 353950 639830 1470500 0 0 0 4902 1168 4848 21651;21652;21653 14362 14362 1 LSLVIRSPSLLQSGAKK Unmodified 1796.0884 0.088368082 682 I3L1L3;Q9BQG0;Q9BQG0-2;I3L2H8 MYBBP1A Myb-binding protein 1A yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 1 1 1 132.73 127.42 3;4 1.477E-158 5 78886 20150910_Q1_SA_NiHu_Masterprac_group10_C 145.79 122.91 138910000 91632000 27493000 0 9252500 0 10535000 4903 682 4849 21654;21655;21656;21657;21658 14363;14364;14365;14366;14367 14367 5 LSNITPNIK Unmodified 998.57605 0.57604528 1170 Q49AG3 ZBED5 Zinc finger BED domain-containing protein 5 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 94.614 92.357 2 0.03657 1 63121 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.56 27.354 1087000 0 0 0 0 0 1087000 4904 1170 4850 21659 14368 14368 1 LSNNPQLSCSSSLIK Unmodified 1646.8298 0.82977013 1241 Q6ZU65 UBN2 Ubinuclein-2 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 122.43 114.59 2 1.686E-08 1 75984 20150910_Q1_SA_NiHu_Masterprac_group10_C 97.823 75.285 2164400 1951300 0 0 213100 0 0 4905 1241 4851 21660;21661 14369 14369 1 LSNVEASKENVSQPK Unmodified 1628.837 0.836964 232 Q96Q89-5;Q96Q89-3;Q96Q89;C9J6W2;Q96Q89-2 KIF20B Kinesin-like protein KIF20B yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 61.289 53.92 3 0.00080122 4 38331 20150910_Q1_SA_NiHu_Masterprac_group13_B 78.505 49.52 3301300 932410 0 0 1205300 1163600 0 4906 232 4852 21662;21663;21664 14370;14371;14372;14373 14371 4 LSPGTDSSSNLGGVKLEGK Unmodified 1844.948 0.94797101 247 I3L4J3;Q7Z3B3;C9JHY2 KANSL1 KAT8 regulatory NSL complex subunit 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 108.89 101.37 3 0.008343 1 67106 20150910_Q1_SA_NiHu_Masterprac_group10_B 42.633 25.887 3169700 0 928860 1019100 0 0 1221700 4907 247 4853 21665;21666;21667 14374 14374 1 LSPSPTTEDPRVR Unmodified 1453.7525 0.75250609 331 E7EQY4;Q9BTC8-2;D6W5A2;F8W8M8;E7EV10;Q9BTC8 MTA3 Metastasis-associated protein MTA3 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 2 2 2 1 2 75.933 69.371 2;3 0.0051594 3 48015 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.235 39.882 58924000 618980 12766000 19535000 1778800 1619700 22605000 4908 331 4854 21668;21669;21670;21671;21672;21673;21674;21675;21676;21677 14375;14376;14377 14376 3 LSQKELLGPPEAK Unmodified 1408.7926 0.79257999 1115 Q14807;B7Z265;H3BRB3 KIF22 Kinesin-like protein KIF22 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 112.51 94.921 3 0.020966 1 70548 20150910_Q1_SA_NiHu_Masterprac_group13_C 48.214 21.116 2568900 0 0 2568900 0 0 0 4909 1115 4855 21678 14378 14378 1 LSQKFPK Unmodified 846.49634 0.49633839 294 CON__P02769 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 51.877 43.504 2 1.2367E-06 2 31290 20150910_Q1_SA_NiHu_Masterprac_group10_B 119.56 51.072 41051000 4478100 10500000 23342000 0 2731500 0 + 4910 294 4856 21679;21680;21681;21682 14379;14380 14380 2 LSQLEEHLSQLQDNPPQEK Unmodified 2232.1022 0.10223983 1121 Q14980-2;Q14980;Q9BTE9;F5H4J1;F5H6Y5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 130.96 130.65 3 2.5551E-17 1 83727 20150910_Q1_SA_NiHu_Masterprac_group10_B 97.713 83.195 34077000 0 31366000 0 2711100 0 0 4911 1121 4857 21683;21684 14381 14381 1 LSQLQVEAAR Unmodified 1113.6142 0.6142217 1579 Q9P2N5 RBM27 RNA-binding protein 27 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 94.674 85.45 2 3.3316E-15 2 58475 20150910_Q1_SA_NiHu_Masterprac_group15_B 121.61 53.237 5636600 557590 0 0 0 1133900 3945100 4912 1579 4858 21685;21686;21687 14382;14383 14382 2 LSQPPLEQTQLQVK Unmodified 1607.8883 0.88827129 208 Q7Z589-2;E9PMC9;Q7Z589;Q17RM7;B7ZKU2;B7ZKU0;B7ZKT8;F5H2F0;H0YET8 EMSY;C11orf30 Protein EMSY yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 131.39 121.06 2 0.0025764 2 85433 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.16 47.869 6774600 3579400 0 0 0 0 3195200 4913 208 4859 21688;21689 14384;14385 14384 2 LSQTPHSQPPRPGTCK Unmodified 1789.8894 0.8893507 503 F5H082;Q9UER7 DAXX Death domain-associated protein 6 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 2 2 2 1 2 46.983 42.135 3;4 0.0054703 3 29908 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.595 49.595 6862300 517790 1138200 1409600 591780 400020 2804900 4914 503 4860 21690;21691;21692;21693;21694;21695;21696;21697;21698;21699 14386;14387;14388 14387 3 LSQTPTHMPTILDDPGK Unmodified 1849.9244 0.9243988 1576 Q9P275;Q9P275-2;E9PEW0;F5H3B9 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 131.69 122.19 3 4.1332E-110 7 78142 20150910_Q1_SA_NiHu_Masterprac_group10_C 140.3 118.19 154550000 31119000 16785000 25224000 18294000 7851400 55273000 4915 1576 4861 21700;21701;21702;21703;21704;21705 14389;14390;14391;14392;14393;14394;14395 14395 7 LSRAELYKEPTNEELNR Unmodified 2061.0491 0.049082043 1497 Q9H6R4-4;Q9H6R4;Q9H6R4-2;G8JLK7;Q9H6R4-3 NOL6 Nucleolar protein 6 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 99.588 92.469 4 0.0014755 1 62053 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.461 44.837 4610500 0 1849300 1270500 0 0 1490700 4916 1497 4862 21706;21707;21708 14396 14396 1 LSRGLSEAAGQTAQMLER Unmodified 1916.9738 0.97380861 768 O95239;O95239-2 KIF4A Chromosome-associated kinesin KIF4A yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.75 131.14 3 0.00078629 1 84608 20150910_Q1_SA_NiHu_Masterprac_group10_B 80.382 43.785 6252400 0 6252400 0 0 0 0 4917 768 4863 21709 14397 14397 1 LSRGSVINQNDLAK Unmodified 1513.8213 0.82125436 1594 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RJ97 TRPS1 Zinc finger transcription factor Trps1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 83.565 81.055 3 0.015282 1 55447 20150910_Q1_SA_NiHu_Masterprac_group10_B 47.301 10.348 1764400 0 1764400 0 0 0 0 4918 1594 4864 21710 14398 14398 1 LSRLATNTSAPDLKNVR Unmodified 1855.0276 0.02755874 388 E7EVA0;P27816-6;P27816;P27816-2;P27816-4;E9PGM5;P27816-5;B9ZVR1;H0Y2V1;B4DSQ1;F8W9U4;H7C4C5;B5MEG9 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 104.34 94.131 4 0.019118 1 63436 20150910_Q1_SA_NiHu_Masterprac_group10_C 39.585 17.22 3611900 1823600 0 775690 0 0 1012600 4919 388 4865 21711;21712;21713 14399 14399 1 LSSAVVFGGGEAR Unmodified 1248.6463 0.64625011 736 O60934;F5H3R2 NBN Nibrin yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 121.39 111.88 2 0.01747 1 72842 20150910_Q1_SA_NiHu_Masterprac_group13_B 50.108 15.413 11332000 308430 0 6174900 3378600 0 1470100 4920 736 4866 21714;21715;21716;21717 14400 14400 1 LSSEHYSSQSHGNSMTELKPSSK Unmodified 2520.1551 0.15508003 1592 Q9UHB7;Q9UHB7-2;Q9UHB7-3 AFF4 AF4/FMR2 family member 4 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 73.935 65.664 4 0.0026043 2 45692 20150910_Q1_SA_NiHu_Masterprac_group13_B 49.528 43.196 7540000 1167800 0 911400 1350800 1671500 2438500 4921 1592 4867 21718;21719;21720;21721;21722 14401;14402 14401 2 LSSEMNTSTVNSAR Unmodified 1495.6937 0.69367058 406 E9PBF6;P20700 LMNB1 Lamin-B1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 72.221 70.799 2 0.0025478 1 49051 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.29 30.358 1760600 0 572810 0 171170 0 1016600 4922 406 4868 21723;21724;21725 14403 14403 1 LSSMDPAMLER Unmodified 1248.5842 0.58424348 1115 Q14807;B7Z265;H3BRB3 KIF22 Kinesin-like protein KIF22 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 130.25 128.39 2 2.3236E-70 2 86063 20150910_Q1_SA_NiHu_Masterprac_group15_B 148.28 104.38 39436000 0 1243300 0 4331300 0 33861000 4923 1115 4869 21726;21727;21728 14404;14405 14405 2 LSSPATLNSR Unmodified 1044.5564 0.55637247 284 CON__P00761 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 76.379 68.802 2 0.0026794 7 48070 20150910_Q1_SA_NiHu_Masterprac_group10_B 99.788 43.156 2308900000 468400000 500190000 320520000 315030000 280800000 424010000 + 4924 284 4870 21729;21730;21731;21732;21733;21734;21735 14406;14407;14408;14409;14410;14411;14412 14410 7 LSSSMYSSQGSSGSSQSK Unmodified 1793.7738 0.7737714 1143 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 59.346 54.733 2 0.0035825 2 44767 20150910_Q1_SA_NiHu_Masterprac_group13_C 49.395 37.19 4519300 0 615680 2036400 558790 0 1308500 4925 1143 4871 21736;21737;21738;21739 14413;14414 14413 2 LSSVDRHHSVEIK Unmodified 1505.795 0.79503961 1097 Q14151 SAFB2 Scaffold attachment factor B2 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 53.848 47.872 3 0.00047149 4 33919 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.345 55.377 23191000 0 2291600 6004700 3739000 4869800 6286300 4926 1097 4872 21740;21741;21742;21743;21744 14415;14416;14417;14418 14416 4 LSSVDRHHSVEIKIEK Unmodified 1876.0167 0.016659702 1097 Q14151 SAFB2 Scaffold attachment factor B2 yes yes 0 0 2 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 81.713 73.215 4 0.0018202 2 57788 20150910_Q1_SA_NiHu_Masterprac_group13_C 68.262 41.671 8031500 0 0 1557200 2490600 2109300 1874500 4927 1097 4873 21745;21746;21747;21748 14419;14420 14419 2 LSSVRGNHIISGTCASWRGK Unmodified 2185.1175 0.11745315 532 F6RIS4;Q9H3M7 TXNIP Thioredoxin-interacting protein yes no 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching 2 2 98.559 90.137 4;5 0.0060151 3 66233 20150910_Q1_SA_NiHu_Masterprac_group15_C 43.848 18.483 6124600 0 0 0 3507200 2617400 0 4928 532 4874 21749;21750;21751;21752 14421;14422;14423 14422 3 LSTLLNHNNDTEEEER Unmodified 1912.8763 0.87626263 1222 Q6KC79-2;Q6KC79 NIPBL Nipped-B-like protein yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 90.193 82.736 3 0.013013 2 56311 20150910_Q1_SA_NiHu_Masterprac_group10_B 42.191 19.756 6789000 625600 1421600 598790 0 0 4143100 4929 1222 4875 21753;21754;21755;21756 14424;14425 14425 1 LSTQEGLVQELQK Unmodified 1471.7882 0.7882229 1456 Q9BW19 KIFC1 Kinesin-like protein KIFC1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.16 130.56 2 3.7971E-91 1 83925 20150910_Q1_SA_NiHu_Masterprac_group10_B 146.96 93.468 54012000 0 54012000 0 0 0 0 4930 1456 4876 21757 14426 14426 1 LSTQSNSNNIEPAR Unmodified 1529.7434 0.74339797 1122 Q14CA3;Q14669;Q14CF1 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 65.482 59.047 2 0.035597 1 41533 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.211 13.563 1872700 0 296030 0 0 573750 1002900 4931 1122 4877 21758;21759;21760 14427 14427 1 LSTQSNSNNIEPARTAGGSGLAR Unmodified 2300.1469 0.14689861 1122 Q14CA3;Q14669;Q14CF1 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 91.286 83.54 3 0.00064861 2 62203 20150910_Q1_SA_NiHu_Masterprac_group15_C 53.453 53.453 25652000 380950 3069900 3261500 1633400 6615500 10691000 4932 1122 4878 21761;21762;21763;21764;21765;21766 14428;14429 14429 2 LSTSGNRPPANAETFSCNK Unmodified 2049.9538 0.95380145 23 A6NHR9;A6NHR9-2;A6NHR9-3 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 87.32 78.409 3 0.016908 1 53775 20150910_Q1_SA_NiHu_Masterprac_group10_B 38.696 30.205 4403400 0 1286900 2035800 672990 407710 0 4933 23 4879 21767;21768;21769;21770 14430 14430 1 LSTVGWASQKK Unmodified 1203.6612 0.66117189 499 F5GZ90;Q9NZJ0;E7ERQ0 DTL Denticleless protein homolog yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 75.757 74.502 3 0.015837 1 51545 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.252 30.937 1390400 0 0 0 0 0 1390400 4934 499 4880 21771 14431 14431 1 LSVASTPISQRR Unmodified 1313.7415 0.74154747 1463;1464 Q9BXS6-2;Q9BXS6-3;Q9BXS6;E7ERR5;Q9BXS6-5;E9PB35;H0YMD2;Q9BXS6-4 NUSAP1 Nucleolar and spindle-associated protein 1 no no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 85.331 80.168 3 0.0014005 3 55148 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.499 45.116 9169100 755780 0 0 0 0 8413300 4935 1463;1464 4881 21772;21773 14432;14433;14434 14432 3 LSVIHRDVKPSNVLINK Unmodified 1931.1316 0.13162988 925 P46734;P46734-2;F8W9D9;P46734-3 MAP2K3 Dual specificity mitogen-activated protein kinase kinase 3 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 112.38 103.44 4 0.0031834 2 70791 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.305 46.666 17244000 1361200 2011900 3160400 1595300 1116900 7998200 4936 925 4882 21774;21775;21776;21777;21778;21779 14435;14436 14435 2 LSVQSNPSPQLR Unmodified 1324.7099 0.709913 97 B4DLG2;O75152;E9PQ61;E9PBY7 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 98.963 91.262 2 0.0014474 4 68338 20150910_Q1_SA_NiHu_Masterprac_group13_C 91.093 40.61 36985000 0 5793300 4218800 3506500 12994000 10473000 4937 97 4883 21780;21781;21782;21783;21784 14437;14438;14439;14440 14438 4 LSVQSNPSPQLRSVMK Unmodified 1769.9458 0.94580295 97 B4DLG2;O75152;E9PQ61;E9PBY7 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 130.35 113.51 3 7.7941E-07 2 76085 20150910_Q1_SA_NiHu_Masterprac_group10_C 90.707 56.275 18361000 9557200 0 8804200 0 0 0 4938 97 4884 21785;21786 14441;14442 14442 2 LSVSGADTSVSSVDGPVSQK Unmodified 1918.9484 0.94836495 142 B4DY82;Q96HI0 SENP5 Sentrin-specific protease 5 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 118.62 115.88 2 0.0052672 1 78867 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.347 36.782 2371900 0 833800 0 0 0 1538100 4939 142 4885 21787;21788 14443 14443 1 LTADPDSEIATTSLR Unmodified 1588.7944 0.79443049 89 B4DGW0;O75928-2;O75928;F8W7X5;H7BYT3;O75928-3;O75925;B3KSY9 PIAS2;PIAS1 E3 SUMO-protein ligase PIAS2;E3 SUMO-protein ligase PIAS1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 127.9 125.12 2 1.3264E-20 3 84657 20150910_Q1_SA_NiHu_Masterprac_group15_B 108.06 89.99 7895200 0 1303000 0 0 0 6592200 4940 89 4886 21789;21790 14444;14445;14446 14445 3 LTAERVEELKK Unmodified 1314.7507 0.75071518 171 H7C128;H7C179;Q9H0E9-4;B5MCW3;H7C127;Q9H0E9-2;Q9H0E9;F8W820 BRD8 Bromodomain-containing protein 8 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 69.771 62.477 3 0.030218 2 44061 20150910_Q1_SA_NiHu_Masterprac_group10_C 65.278 15.83 23010000 3285900 2291900 3477600 3371100 4913700 5669400 4941 171 4887 21791;21792;21793;21794;21795;21796 14447;14448 14448 2 LTAQVEELSK Unmodified 1116.6027 0.60265396 1121 Q14980-2;F5H2L0;H0YFY6;H0YH75 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 98.903 90.553 2 8.0232E-35 8 61216 20150910_Q1_SA_NiHu_Masterprac_group10_B 133.89 84.592 74004000 11546000 6833100 11677000 10289000 19085000 14574000 4942 1121 4888 21797;21798;21799;21800;21801;21802;21803 14449;14450;14451;14452;14453;14454;14455;14456 14454 8 LTATIWK Unmodified 831.48544 0.48543935 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 124.72 109.14 2 0.040677 1 72877 20150910_Q1_SA_NiHu_Masterprac_group10_C 81.784 52.446 2063400 2063400 0 0 0 0 0 4943 578 4889 21804 14457 14457 1 LTAVCMECFR Unmodified 1285.5617 0.56173389 787 P04183 TK1 Thymidine kinase, cytosolic yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 132.48 114.73 2 0.02 1 81556 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.624 51.986 3814600 0 0 0 0 3814600 0 4944 787 4890 21805 14458 14458 1 LTAVCMECFREAAYTK Unmodified 1948.8845 0.8845246 787 P04183 TK1 Thymidine kinase, cytosolic yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 132.68 127.71 3 0.002543 1 87671 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.444 16.637 24287000 0 0 0 0 0 24287000 4945 787 4891 21806 14459 14459 1 LTCFELAPK Unmodified 1077.5529 0.55286699 1155 Q16666-3;Q16666-2;Q16666;H3BLV7;E7EPR3 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 127.26 121.43 2 9.0183E-30 3 80753 20150910_Q1_SA_NiHu_Masterprac_group15_C 135.71 78.99 12469000 0 1195100 0 1075000 5707300 4491900 4946 1155 4892 21807;21808;21809;21810 14460;14461;14462 14461 3 LTCFSVYCK Unmodified 1176.5308 0.53075134 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 119.31 110.97 2 4.3283E-12 5 75842 20150910_Q1_SA_NiHu_Masterprac_group15_B 123.21 103.55 48216000 0 8300500 10145000 4657600 1346500 23766000 4947 487 4893 21811;21812;21813;21814;21815 14463;14464;14465;14466;14467 14466 5 LTCLELIQNTHSQSCLK Unmodified 2044.0081 0.0081452054 479 Q9BYW2;F2Z317;H7C3H4 SETD2 Histone-lysine N-methyltransferase SETD2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.8 131.19 3 0.0041551 1 84631 20150910_Q1_SA_NiHu_Masterprac_group10_B 47.217 21.9 1088500 0 1088500 0 0 0 0 4948 479 4894 21816 14468 14468 1 LTDCVVMRDPASK Unmodified 1490.7221 0.72213394 863 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 2 2 2 1 1 96.596 88.871 2;3 0.0022752 4 60002 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.54 49.801 24282000 4836900 7473400 2417900 3177300 1007800 5368500 4949 863 4895 21817;21818;21819;21820;21821;21822;21823;21824;21825;21826 14469;14470;14471;14472 14470 4 LTDLPTVVTK Unmodified 1085.6332 0.6332258 737 O75132 ZBED4 Zinc finger BED domain-containing protein 4 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 121.6 118.92 2 0.030463 1 76638 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.174 35.146 2983000 0 1020400 0 0 0 1962600 4950 737 4896 21827;21828 14473 14473 1 LTEEEKNRLNFLK Unmodified 1632.8835 0.88352026 289 CON__P02663 yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 3 3 115.3 105.78 2;3;4 6.7597E-15 8 72384 20150910_Q1_SA_NiHu_Masterprac_group15_B 109.16 84.227 174170000 25363000 5545800 27558000 27040000 30959000 57703000 + 4951 289 4897 21829;21830;21831;21832;21833;21834;21835;21836;21837;21838;21839;21840 14474;14475;14476;14477;14478;14479;14480;14481 14477 8 LTEEFQNVR Unmodified 1134.5669 0.56693715 432 E9PGN6;Q9UI43 FTSJ2 Putative ribosomal RNA methyltransferase 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 91.34 89.358 2 0.0060166 1 61135 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.502 63.744 1475900 0 403910 0 0 0 1072000 4952 432 4898 21841;21842 14482 14482 1 LTEHFDEKPFSCEECGAK Unmodified 2182.93 0.92995446 1545 Q9NUA8;F8WAI8 ZBTB40 Zinc finger and BTB domain-containing protein 40 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 2 2 2 2 109.84 100.69 3;4 0.0011336 5 66542 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.445 69.329 32564000 3088500 1673800 5839600 4908300 8273200 8780900 4953 1545 4899 21843;21844;21845;21846;21847;21848;21849;21850;21851;21852 14483;14484;14485;14486;14487 14487 4 LTELGTVDPK Unmodified 1071.5812 0.58119023 929 P46940;H0YLE8 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 99.479 89.928 2 0.01091 1 61518 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.096 47.864 5369100 0 749350 592760 0 1638600 2388300 4954 929 4900 21853;21854;21855;21856 14488 14488 1 LTELGTVDPKNK Unmodified 1313.7191 0.7190807 929 P46940;H0YLE8 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 1 2 2 78.752 73.895 2;3 0.0041205 4 51085 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.614 36.354 7313300 1189200 370260 467890 952780 0 4333200 4955 929 4901 21857;21858;21859;21860;21861;21862;21863;21864 14489;14490;14491;14492 14490 4 LTEPHQVYVQILQK Unmodified 1694.9356 0.93555583 1080 Q13415 ORC1 Origin recognition complex subunit 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.84 131.23 3 0.00092247 1 84687 20150910_Q1_SA_NiHu_Masterprac_group10_B 72.681 52.024 32657000 0 32657000 0 0 0 0 4956 1080 4902 21865 14493 14493 1 LTEQLQATEK Unmodified 1159.6085 0.60846762 729 O60293-2;O60293 ZFC3H1 Zinc finger C3H1 domain-containing protein yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 69.604 64.013 2 0.01867 1 44652 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.73 28.822 2446700 1175200 1271500 0 0 0 0 4957 729 4903 21866;21867 14494 14494 1 LTESNSAMVK Unmodified 1078.5329 0.53285983 224 C9J7T7;C9JE98;C9J239;Q9Y618-5;C9J0Q5;Q9Y618-4;C9JJF6;C9JFD3;Q9Y618-3;Q9Y618;Q9Y618-2;H7C184;H7C2D4;H0Y5V2 NCOR2 Nuclear receptor corepressor 2 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 56.809 51.059 2 0.022444 1 41632 20150910_Q1_SA_NiHu_Masterprac_group13_C 61.593 10.148 1995400 0 529510 650330 0 0 815590 4958 224 4904 21868;21869;21870 14495 14495 1 LTEVPVEPVLTVHPESK Unmodified 1873.0197 0.019679395 1486 Q9H307;Q9H307-2 PNN Pinin yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 133.04 115.2 3 0.0034889 1 82127 20150910_Q1_SA_NiHu_Masterprac_group15_C 48.677 36.313 7732100 0 0 0 0 7732100 0 4959 1486 4905 21871 14496 14496 1 LTFNNPTTEFRYK Unmodified 1629.8151 0.81510635 1036 Q03111 MLLT1 Protein ENL yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 132.17 129.38 3 1.9355E-34 2 84770 20150910_Q1_SA_NiHu_Masterprac_group10_B 120.55 87.234 30862000 0 17361000 0 0 0 13500000 4960 1036 4906 21872;21873 14497;14498 14498 2 LTGEVVALK Unmodified 928.55933 0.55933258 589 P24941-2;P24941;G3V5T9;E7ESI2;G3V317 CDK2 Cyclin-dependent kinase 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 107.18 98.45 2 0.017155 2 65448 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.614 25.641 35862000 2270200 5449300 4533800 1558700 4515900 17534000 4961 589 4907 21874;21875;21876;21877;21878;21879 14499;14500 14500 2 LTGRDPNDVRPIQAR Unmodified 1706.9176 0.91761436 1486 Q9H307;G3V5F0;G3V579 PNN Pinin yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 72.454 65.076 4 0.012685 2 45642 20150910_Q1_SA_NiHu_Masterprac_group10_B 45.207 22.629 16865000 2624900 1700400 1170900 1271800 4474000 5622800 4962 1486 4908 21880;21881;21882;21883;21884;21885 14501;14502 14502 2 LTGSQACPSPRPRPR Unmodified 1678.8686 0.86855568 663 H7C0J3;H7C3H7 CHD3 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 46.969 40.928 4 0.0039318 1 28934 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.343 34.847 4630500 0 0 779970 231110 824840 2794600 4963 663 4909 21886;21887;21888;21889 14503 14503 1 LTGVFAPRPSTGPHK Unmodified 1563.8522 0.85216056 993 P62701;Q8TD47;A6NH36;C9JEH7;P22090 RPS4X;RPS4Y2;RPS4Y1 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 99.186 82.844 3 0.020961 1 61645 20150910_Q1_SA_NiHu_Masterprac_group15_C 42.317 10.595 1949700 0 0 0 0 1949700 0 4964 993 4910 21890 14504 14504 1 LTGVIVENENITK Unmodified 1428.7824 0.78240924 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 125.39 115.91 2 3.1722E-09 4 81608 20150910_Q1_SA_NiHu_Masterprac_group13_C 103.76 66.808 26387000 13024000 3029500 4304900 920020 1302800 3805600 4965 1325 4911 21891;21892;21893;21894;21895;21896 14505;14506;14507;14508 14505 4 LTHDLQGPGAPPAQAWAAGPGAGPETAGEGTAAEAGDAPLASDRR Unmodified 4262.0377 0.037689094 1419 Q96SL8 FIZ1 Flt3-interacting zinc finger protein 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 132.05 122.87 4 0.00011944 2 84876 20150910_Q1_SA_NiHu_Masterprac_group10_B 17.789 14.504 12271000 0 8507900 0 0 3763000 0 4966 1419 4912 21897;21898 14509;14510 14510 2 LTHELPGIK Unmodified 1006.5811 0.58113065 667 H7C1J2;H7C1M5;Q9H147;F2Z2A4 DNTTIP1 Deoxynucleotidyltransferase terminal-interacting protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 86.16 84.404 2 0.013016 1 57881 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.455 9.9298 1706000 0 0 0 0 0 1706000 4967 667 4913 21899 14511 14511 1 LTIAEER Unmodified 830.44978 0.44978213 993 P62701;Q8TD47 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 73.363 62.735 2 0.011419 1 44240 20150910_Q1_SA_NiHu_Masterprac_group10_B 101.33 18.656 1969300 397110 557800 506410 0 507960 0 4968 993 4914 21900;21901;21902;21903 14512 14512 1 LTIHGDLYYEGK Unmodified 1407.7034 0.70343063 1083 Q13435;E9PPJ0;H0YEX5 SF3B2 Splicing factor 3B subunit 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 113.27 110.29 3 0.0031471 1 75720 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.879 37.544 1436400 0 402040 0 0 0 1034300 4969 1083 4915 21904;21905 14513 14513 1 LTIMLEK Unmodified 846.48848 0.48847582 1276 Q8IV48 ERI1 3'-5' exoribonuclease 1 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 131.97 116.29 2 0.033983 1 77702 20150910_Q1_SA_NiHu_Masterprac_group10_C 89.752 22.72 2513300 2513300 0 0 0 0 0 4970 1276 4916 21906 14514 14514 0 LTLKGGAAVDPDSGLEHSAHVLEK Unmodified 2443.2707 0.27070214 815 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 2 130.05 130.05 4;5 2.1123E-06 2 83039 20150910_Q1_SA_NiHu_Masterprac_group13_B 59.918 41.565 6734500 0 0 0 6734500 0 0 4971 815 4917 21907;21908 14515;14516 14515 2 LTLLQVASR Unmodified 999.60768 0.60767976 768 O95239;O95239-2;F5H4Q9 KIF4A Chromosome-associated kinesin KIF4A yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 133.15 132.54 2 1.6958E-19 1 86130 20150910_Q1_SA_NiHu_Masterprac_group10_B 128.27 34.672 33022000 0 33022000 0 0 0 0 4972 768 4918 21909 14517 14517 1 LTLPGDKNRLK Unmodified 1253.7456 0.74557022 729 O60293-2;O60293;O60293-4;G3V1X1 ZFC3H1 Zinc finger C3H1 domain-containing protein yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 83.276 75.856 3 0.015196 1 57618 20150910_Q1_SA_NiHu_Masterprac_group15_C 74.841 38.256 3643200 0 477080 526890 400200 692750 1546200 4973 729 4919 21910;21911;21912;21913;21914 14518 14518 1 LTLVAPPGGPNGDSSGGTQGVAK Unmodified 2079.0596 0.059646729 1528 Q9NPG3-2;Q9NPG3 UBN1 Ubinuclein-1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 130.33 125.36 2 9.052E-09 1 85119 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.137 51.349 4687300 0 0 0 0 0 4687300 4974 1528 4920 21915 14519 14519 1 LTMLNTVSK Unmodified 1005.5529 0.55286699 1435 Q99961 SH3GL1 Endophilin-A2 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 108.43 98.227 2 0.018028 1 66943 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.908 40.34 2500500 0 0 0 0 390270 2110200 4975 1435 4921 21916;21917 14520 14520 1 LTMQVSSLQREPFTIAQGKGQK Oxidation (M) 2462.2951 0.29514275 901 P35659;D6R9L5 DEK Protein DEK yes no 0 1 2 By MS/MS By matching By matching By matching By matching By matching 1 131.14 115.45 4 0.012487 1 76730 20150910_Q1_SA_NiHu_Masterprac_group10_C 47.089 23.453 6528500 6528500 0 0 0 0 0 4976 901 4922 21918 14521 14521 101 1 LTMQVSSLQREPFTIAQGKGQK Unmodified 2446.3002 0.30022813 901 P35659;D6R9L5 DEK Protein DEK yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 133.03 117.34 4 0.0058481 1 78793 20150910_Q1_SA_NiHu_Masterprac_group10_C 42.705 25.119 7160700 7160700 0 0 0 0 0 4977 901 4922 21919 14522 14522 1 LTNAEGVEFK Unmodified 1106.5608 0.56078914 600 G5E9Z8;H0YH39;O76094 SRP72 Signal recognition particle subunit SRP72 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 93.758 86.765 2 0.0031326 2 64037 20150910_Q1_SA_NiHu_Masterprac_group15_C 91.549 51.764 4992900 730620 0 0 338700 2436700 1486900 4978 600 4923 21920;21921;21922;21923 14523;14524 14523 2 LTNTNRALALNCFAPINDQEGAEAK Unmodified 2730.3395 0.33952676 175 B5ME40;F5GXG0;Q96T88 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 133.07 132.47 3 1.1534E-38 1 86050 20150910_Q1_SA_NiHu_Masterprac_group10_B 97.94 79.959 37973000 0 37973000 0 0 0 0 4979 175 4924 21924 14525 14525 1 LTPEEEEILNK Unmodified 1313.6715 0.6714618 985 Q5JR95;P62241 RPS8 40S ribosomal protein S8 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 128.68 112.99 2 0.011908 1 74689 20150910_Q1_SA_NiHu_Masterprac_group10_C 62.633 43.177 853970 853970 0 0 0 0 0 4980 985 4925 21925 14526 14526 1 LTPEEEEILNKK Unmodified 1441.7664 0.76642482 985 Q5JR95;P62241 RPS8 40S ribosomal protein S8 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 107.52 98.734 3 2.0891E-18 3 71177 20150910_Q1_SA_NiHu_Masterprac_group15_C 114.86 102.55 20919000 4065500 3601400 1734800 1248200 4785000 5484400 4981 985 4926 21926;21927;21928;21929;21930;21931 14527;14528;14529 14528 3 LTPEEEEILNKKR Unmodified 1597.8675 0.86753585 985 Q5JR95;P62241 RPS8 40S ribosomal protein S8 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 93.925 86.046 4 0.023181 2 58774 20150910_Q1_SA_NiHu_Masterprac_group10_C 46.063 15.065 7632500 1530100 809470 1201400 836140 2467000 788450 4982 985 4927 21932;21933;21934;21935;21936;21937 14530;14531 14530 2 LTPLPEDNSMNVDQDGDPSDR Unmodified 2314.0019 0.0019334331 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 130.91 125.95 2 1.5021E-45 1 85709 20150910_Q1_SA_NiHu_Masterprac_group15_B 109.5 100.23 8596500 0 0 0 0 0 8596500 4983 1012 4928 21938 14532 14532 1 LTPLSHEVISR Unmodified 1250.6983 0.69828568 910 Q2VIR3;P41091;H7BZU1;Q2VIR3-2;F8W810 EIF2S3L;EIF2S3 Putative eukaryotic translation initiation factor 2 subunit 3-like protein;Eukaryotic translation initiation factor 2 subunit 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 96.246 93.889 3 0.011492 1 64092 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.494 66.402 1482500 0 0 0 0 0 1482500 4984 910 4929 21939 14533 14533 1 LTPVRPAAASPIVSGAR Unmodified 1661.9577 0.95768826 314 E7EMR1;D4QA03;E9PIL6;Q9Y2K7-3;Q9Y2K7-2;Q9Y2K7 KDM2A Lysine-specific demethylase 2A yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 117.55 104.65 3 0.0020085 1 71511 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.121 41.949 10848000 0 0 1761600 0 3295500 5790700 4985 314 4930 21940;21941;21942 14534 14534 1 LTPYEVDELR Unmodified 1233.6241 0.62411768 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 131.43 121.93 2 0.0027611 5 81031 20150910_Q1_SA_NiHu_Masterprac_group15_C 97.813 50.858 182250000 29134000 42168000 19049000 9260000 8383100 74256000 4986 1361;629 4931 21943;21944;21945;21946;21947;21948 14535;14536;14537;14538;14539 14538 5 LTPYEVDELRR Unmodified 1389.7252 0.72522871 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 118.49 109.13 3 0.0063658 5 77039 20150910_Q1_SA_NiHu_Masterprac_group15_C 62.166 16.402 63221000 11303000 10050000 8345500 6018300 10597000 16907000 4987 1361;629 4932 21949;21950;21951;21952;21953;21954 14540;14541;14542;14543;14544 14542 5 LTPYEVDELRRK Unmodified 1517.8202 0.82019173 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 103.56 95.363 3 0.00037255 1 69224 20150910_Q1_SA_NiHu_Masterprac_group15_C 98.156 64.567 60807000 257590 642750 0 0 59333000 572980 4988 1361;629 4933 21955;21956;21957;21958 14545 14545 1 LTQDQDVDVK Unmodified 1159.5721 0.57208211 81 F5H3X9;B4DDF7;P30153;E9PH38;B4E1Q0 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 59.231 52.834 2 2.2826E-09 4 37783 20150910_Q1_SA_NiHu_Masterprac_group15_B 117.52 88.943 6223000 0 1319700 1523900 434090 913590 2031800 4989 81 4934 21959;21960;21961;21962;21963 14546;14547;14548;14549 14547 4 LTQEETNFK Unmodified 1108.5401 0.5400537 419 E9PD53;Q9NTJ3;Q9NTJ3-2;F5H0U7 SMC4 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 4 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 69.782 59.187 2 0.012845 2 41877 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.755 43.206 3758000 0 0 722170 0 688940 2346900 4990 419 4935 21964;21965;21966 14550;14551 14551 2 LTQTSGETTHTDKEPVGEGK Unmodified 2114.0128 0.012756116 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 48.389 42.699 3;4 3.4646E-07 13 34892 20150910_Q1_SA_NiHu_Masterprac_group13_C 88.385 88.385 160920000 17580000 31110000 27765000 14309000 25450000 44710000 4991 919;920 4936 21967;21968;21969;21970;21971;21972;21973;21974;21975;21976;21977;21978 14552;14553;14554;14555;14556;14557;14558;14559;14560;14561;14562;14563;14564 14557 13 LTQTSGETTHTDKEPVGEGKGTK Unmodified 2400.1769 0.17686133 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 1 43.43 37.526 3;4 2.445E-10 8 30512 20150910_Q1_SA_NiHu_Masterprac_group13_C 82.406 82.406 197480000 32927000 5838500 81246000 4046000 61329000 12098000 4992 919;920 4937 21979;21980;21981;21982;21983;21984;21985;21986;21987 14565;14566;14567;14568;14569;14570;14571;14572 14569 8 LTQTSGETTHTDKVPGGEDK Unmodified 2099.9971 0.99710605 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 2 3 53.023 47.184 3;4 8.4441E-11 16 33758 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.442 74.508 559870000 81841000 112910000 118640000 58734000 62665000 125070000 4993 919;920 4938 21988;21989;21990;21991;21992;21993;21994;21995;21996;21997;21998;21999;22000;22001;22002 14573;14574;14575;14576;14577;14578;14579;14580;14581;14582;14583;14584;14585;14586;14587;14588 14579 16 LTQTSGETTHTHTEPTGDGK Unmodified 2096.9611 0.9610549 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 38.986 33.22 4 0.028045 1 27980 20150910_Q1_SA_NiHu_Masterprac_group15_C 33.666 26.227 407510000 0 57774000 60271000 0 1403800 288060000 4994 919;920 4939 22003;22004;22005;22006 14589 14589 1 LTQTSGETTHTHTEPTGDGKSMK Unmodified 2443.1285 0.12853093 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 44.127 38.821 4 0.03531 1 31828 20150910_Q1_SA_NiHu_Masterprac_group13_C 31.767 31.767 5374100 693920 459890 1784400 1000600 1245600 189690 4995 919;920 4940 22007;22008;22009;22010;22011;22012 14590 14590 1 LTQTSGQSTHTHKEPASGDEGIK Unmodified 2408.1568 0.15679459 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 2 2 2 43.536 38.313 3;4 0.00073919 2 32361 20150910_Q1_SA_NiHu_Masterprac_group15_C 53.254 41.598 44656000 3286400 9187000 5184900 2775700 8419200 15803000 4996 919;920 4941 22013;22014;22015;22016;22017;22018;22019;22020;22021;22022;22023;22024 14591;14592 14592 2 LTQVLRDSFIGENSR Unmodified 1733.906 0.90604662 193;403;686 B7Z6Q6;Q99661;Q99661-2;B7Z7M6;H0Y5Z9;O00139-1;E9PB70;O00139;O00139-4;O00139-2 KIF2C;KIF2A Kinesin-like protein KIF2C;Kinesin-like protein KIF2A no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 2 132.1 122.05 2;3 2.6995E-70 8 86615 20150910_Q1_SA_NiHu_Masterprac_group15_B 133.23 99.641 551110000 62932000 69110000 80067000 0 24770000 314230000 4997 193;403;686 4942 22025;22026;22027;22028;22029;22030;22031;22032;22033 14593;14594;14595;14596;14597;14598;14599;14600 14596 8 LTRDAQSPDESKTNEK Unmodified 1817.8755 0.87553435 1159 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 1 1 1 28.755 24.768 3;4 1.1863E-06 4 20346 20150910_Q1_SA_NiHu_Masterprac_group13_C 92.952 92.952 12002000 744000 3347600 4747600 1670600 357980 1133900 4998 1159 4943 22034;22035;22036;22037;22038;22039;22040;22041 14601;14602;14603;14604 14602 4 LTRDDVIQICGPADGIR Unmodified 1897.968 0.96799495 1060 Q12800-3;Q12800;F8VWL0;Q12800-2;Q12800-4 TFCP2 Alpha-globin transcription factor CP2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.95 131.34 3 0.00063348 1 84812 20150910_Q1_SA_NiHu_Masterprac_group10_B 82.449 41.435 4567800 0 4567800 0 0 0 0 4999 1060 4944 22042 14605 14605 1 LTRPAASPAVGEK Unmodified 1295.7197 0.7197494 505 Q8N2M8-3;F8WAG9;F5H0Q6;Q8N2M8 CLASRP CLK4-associating serine/arginine rich protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 60.165 56.254 3 0.0038001 1 39755 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.181 37.638 1438600 424280 250320 0 0 0 763970 5000 505 4945 22043;22044;22045 14606 14606 1 LTRRLVNSQCEFER Unmodified 1806.9159 0.9158998 1529 Q9NPI1;Q9NPI1-2 BRD7 Bromodomain-containing protein 7 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 83.355 78.166 4 0.019497 1 53784 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.511 26.495 4966100 0 2169800 965650 785450 0 1045200 5001 1529 4946 22046;22047;22048;22049 14607 14607 1 LTRTSGETTQTHTEPTGDSK Unmodified 2146.0138 0.013818748 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 37.014 32.376 3;4 2.9192E-11 9 27509 20150910_Q1_SA_NiHu_Masterprac_group15_C 93.5 74.919 510040000 53346000 71584000 121130000 68275000 79175000 116520000 5002 919;920 4947 22050;22051;22052;22053;22054;22055;22056;22057;22058;22059;22060;22061 14608;14609;14610;14611;14612;14613;14614;14615;14616 14613 9 LTRTSGETTQTHTEPTGDSKSIK Unmodified 2474.2249 0.22487416 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By matching By matching By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 1 2 47.818 42.74 4;5 3.1131E-54 5 35957 20150910_Q1_SA_NiHu_Masterprac_group15_C 107.25 87.991 48582000 6504500 4558900 17851000 7483300 3781500 8402900 5003 919;920 4948 22062;22063;22064;22065;22066;22067;22068;22069;22070;22071;22072 14617;14618;14619;14620;14621 14621 5 LTSDDVKEQIYK Unmodified 1437.7351 0.73512469 471 E9PS50;P62277 RPS13 40S ribosomal protein S13 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 98.368 91.314 2;3 5.9897E-12 7 66888 20150910_Q1_SA_NiHu_Masterprac_group15_C 108.98 67.875 13142000 0 2276400 0 0 5167300 5698000 5004 471 4949 22073;22074;22075;22076;22077;22078 14622;14623;14624;14625;14626;14627;14628 14625 7 LTSLNEEYTK Unmodified 1196.5925 0.5924832 162 B4E2Z2;P43246;E9PHA6;B4DL39;B4DSB9 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 89.951 81.028 2 9.5245E-48 2 55484 20150910_Q1_SA_NiHu_Masterprac_group15_B 139.15 96.805 10484000 818100 0 0 0 2484500 7181000 5005 162 4950 22079;22080;22081 14629;14630 14629 2 LTSLNEEYTKNK Unmodified 1438.7304 0.73037367 162 B4E2Z2;P43246;E9PHA6;B4DL39;B4DSB9 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 2 2 1 2 2 76.514 68.388 2;3 4.295E-07 5 47489 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.39 84.864 25709000 2004700 4690000 3090000 2007300 3401000 10516000 5006 162 4951 22082;22083;22084;22085;22086;22087;22088;22089;22090;22091 14631;14632;14633;14634;14635 14632 5 LTSLNVKYNNDK Unmodified 1407.7358 0.73579339 882;774 P26599;P26599-2;P26599-3;O95758-1;O95758-6;O95758-2;O95758;O95758-5;O95758-4;B1ALY6 PTBP1;PTBP3 Polypyrimidine tract-binding protein 1;Polypyrimidine tract-binding protein 3 no no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 2 1 81.643 77.857 2;3 6.0507E-13 3 53372 20150910_Q1_SA_NiHu_Masterprac_group10_B 112.64 77.122 7056700 331970 4865400 0 0 0 1859400 5007 882;774 4952 22092;22093;22094;22095 14636;14637;14638 14637 3 LTSLNVKYNNDKSR Unmodified 1650.8689 0.86893283 882;774 P26599;P26599-2;P26599-3;O95758-1;O95758-6;O95758-2;O95758;O95758-5;O95758-4;B1ALY6 PTBP1;PTBP3 Polypyrimidine tract-binding protein 1;Polypyrimidine tract-binding protein 3 no no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 73.751 66.899 4 0.037169 1 46661 20150910_Q1_SA_NiHu_Masterprac_group10_B 39.033 18.909 6541800 0 4934800 603280 0 0 1003700 5008 882;774 4953 22096;22097;22098 14639 14639 1 LTSMHFYGWK Unmodified 1268.6012 0.60121417 870 P23921;H0YFI0;E9PD78;E9PL69;F5H861 RRM1 Ribonucleoside-diphosphate reductase large subunit;Ribonucleoside-diphosphate reductase yes no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 132.63 122.43 3 0.001852 4 87730 20150910_Q1_SA_NiHu_Masterprac_group15_B 102.07 78.695 32649000 0 0 3143600 4403500 3155300 21947000 5009 870 4954 22099;22100;22101;22102 14640;14641;14642;14643 14642 4 LTSSTSNSSLTADVNSGFAK Unmodified 1985.9542 0.9541786 1332 Q8NI77 KIF18A Kinesin-like protein KIF18A yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 128.69 121.61 2 7.3269E-11 2 77377 20150910_Q1_SA_NiHu_Masterprac_group10_C 90.896 69.537 17562000 11814000 1656400 0 0 0 4092500 5010 1332 4955 22103;22104;22105 14644;14645 14645 2 LTTAQEVLAR Unmodified 1100.619 0.61897272 1485 Q9H211 CDT1 DNA replication factor Cdt1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 108.32 97.887 2 0.0030827 2 66589 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.239 27.585 12931000 940110 2453700 3152300 0 1358300 5026200 5011 1485 4956 22106;22107;22108;22109;22110 14646;14647 14646 2 LTTEATQTPVSNKKPVFDLK Unmodified 2216.2052 0.20524833 1463;1464 Q9BXS6-2;Q9BXS6-3;Q9BXS6;Q9BXS6-5;Q9BXS6-4 NUSAP1 Nucleolar and spindle-associated protein 1 no no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 124.04 114.55 3 0.0025919 4 80731 20150910_Q1_SA_NiHu_Masterprac_group13_C 55.453 32.627 24874000 6096500 2287900 8254100 246680 892800 7096400 5012 1463;1464 4957 22111;22112;22113;22114;22115;22116 14648;14649;14650;14651 14648 4 LTTINCEEGDKLK Unmodified 1519.7552 0.75520821 1155 Q16666-3;Q16666-2;Q16666;H3BLV7;E7EPR3 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 88.495 79.646 2 0.029736 1 59804 20150910_Q1_SA_NiHu_Masterprac_group15_C 54.023 26.056 1973200 0 0 0 0 1337600 635650 5013 1155 4958 22117;22118 14652 14652 1 LTTTGQVTSPVK Unmodified 1230.682 0.68196691 947 P49916-2;P49916 LIG3 DNA ligase 3 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 85.06 79.284 2 0.0079543 2 59474 20150910_Q1_SA_NiHu_Masterprac_group15_C 61.11 35.637 5723800 765380 454590 0 787750 1797400 1918700 5014 947 4959 22119;22120;22121;22122;22123 14653;14654 14654 2 LTTTGQVTSPVKGASFVTSTNPRK Unmodified 2476.3286 0.32855137 947 P49916-2;P49916 LIG3 DNA ligase 3 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 114.66 112.8 4 0.022517 1 73064 20150910_Q1_SA_NiHu_Masterprac_group13_B 32.896 27.264 2962700 0 564680 0 1425000 0 973050 5015 947 4960 22124;22125;22126 14655 14655 1 LTTVCPTVKPQTQGLAK Unmodified 1841.0081 0.0080688509 803 P07947 YES1 Tyrosine-protein kinase Yes yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 108.62 98.692 3 0.0022728 3 67306 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.237 30.84 20652000 0 3720200 5613600 0 1260300 10058000 5016 803 4961 22127;22128;22129;22130 14656;14657;14658 14657 3 LTVENSPKQEAGISEGQGTAGEEEEK Unmodified 2716.2675 0.26752683 544 F8VVL1;O43583 DENR Density-regulated protein yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 94.409 86.514 3 1.2735E-28 6 65546 20150910_Q1_SA_NiHu_Masterprac_group13_C 90.778 78.617 105250000 27807000 12385000 14070000 13161000 24209000 13620000 5017 544 4962 22131;22132;22133;22134;22135;22136 14659;14660;14661;14662;14663;14664 14659 6 LTVENSPKQEAGISEGQGTAGEEEEKK Unmodified 2844.3625 0.36248985 544 F8VVL1;O43583 DENR Density-regulated protein yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 86.85 79.205 4 1.6888E-16 8 54471 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.935 72.213 29409000 6632400 3813900 5378400 4543000 5259400 3782300 5018 544 4963 22137;22138;22139;22140;22141;22142 14665;14666;14667;14668;14669;14670;14671;14672 14670 8 LTVMYSQINGASR Unmodified 1438.7238 0.7238485 1105 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 124.46 119.2 2 0.0021953 2 81604 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.513 49.458 11535000 4980000 970920 0 341600 0 5242400 5019 1105 4964 22143;22144;22145;22146 14673;14674 14673 2 LTWHAYPEDAENKEK Unmodified 1829.8584 0.85842773 579 G3V1X9;P45973 CBX5 Chromobox protein homolog 5 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 97.282 90.129 4 0.02095 2 60914 20150910_Q1_SA_NiHu_Masterprac_group10_B 42.52 10.042 8495700 0 1359000 2846600 0 0 4290100 5020 579 4965 22147;22148;22149 14675;14676 14676 2 LTWHSCPEDEAQ Unmodified 1471.6038 0.60379294 1075 Q13185 CBX3 Chromobox protein homolog 3 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 100.78 91.104 2 7.4324E-05 4 61393 20150910_Q1_SA_NiHu_Masterprac_group10_B 99.283 93.812 7234000 732320 1975900 1242500 0 1302300 1981000 5021 1075 4966 22150;22151;22152;22153;22154 14677;14678;14679;14680 14679 3 LTYLLQNSLGGSAK Unmodified 1463.7984 0.79839365 1456 Q9BW19 KIFC1 Kinesin-like protein KIFC1 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 133.35 124.13 2 7.7131E-06 3 86394 20150910_Q1_SA_NiHu_Masterprac_group10_B 83.869 53.663 35050000 0 25828000 0 0 9222100 0 5022 1456 4967 22155;22156;22157 14681;14682;14683 14683 2 LVCSGENDNHGQIANLPSAVTSDQK Unmodified 2653.2402 0.24020664 1345 Q8WYP5;Q8WYP5-3;Q8WYP5-2 AHCTF1 Protein ELYS yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 127.94 114.93 3 0 6 76472 20150910_Q1_SA_NiHu_Masterprac_group10_C 180.03 152.3 74647000 37610000 8160100 25872000 0 3005300 0 5023 1345 4968 22158;22159;22160;22161 14684;14685;14686;14687;14688;14689 14689 6 LVCSVTGMALPR Unmodified 1302.6788 0.67881256 1042 Q06330;D6R927;Q06330-5;Q06330-4;Q06330-6;Q06330-7;Q06330-3;Q06330-2 RBPJ Recombining binding protein suppressor of hairless yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 133.03 115.11 2 0.0017858 1 81978 20150910_Q1_SA_NiHu_Masterprac_group15_C 77.597 21.554 11417000 0 0 4153600 0 7263700 0 5024 1042 4969 22162;22163 14690 14690 1 LVCTDIADVSVK Unmodified 1318.6803 0.68025235 709 O43148;O43148-2;B7Z8S9 RNMT mRNA cap guanine-N7 methyltransferase yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.41 126.45 2 0.014704 1 86303 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.105 21.229 12546000 0 0 0 0 0 12546000 5025 709 4970 22164 14691 14691 1 LVCTDIADVSVKQCQQR Unmodified 2018.9877 0.98774411 709 O43148;O43148-2;B7Z8S9 RNMT mRNA cap guanine-N7 methyltransferase yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 2 1 1 120.3 110.7 3 1.2518E-07 5 75640 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.076 69.025 18961000 1671600 3009300 5276100 494360 0 8509900 5026 709 4971 22165;22166;22167;22168;22169;22170 14692;14693;14694;14695;14696 14693 5 LVDQSGPPHEPK Unmodified 1302.6568 0.65681479 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 1 1 2 1 2 54.738 49.862 2;3 0.0015632 6 35679 20150910_Q1_SA_NiHu_Masterprac_group10_B 84.821 51.06 42952000 1440200 6260800 1016200 1522000 8839100 23874000 5027 352;968 4972 22171;22172;22173;22174;22175;22176;22177;22178;22179 14697;14698;14699;14700;14701;14702 14700 6 LVDQSGPPHEPKFVYQAK Unmodified 2039.0476 0.04762548 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 111.12 102.2 3;4 4.8535E-14 11 68585 20150910_Q1_SA_NiHu_Masterprac_group10_C 99.055 84.262 109150000 17286000 14912000 14946000 9442700 14215000 38345000 5028 352;968 4973 22180;22181;22182;22183;22184;22185;22186;22187;22188;22189;22190;22191 14703;14704;14705;14706;14707;14708;14709;14710;14711;14712;14713 14712 11 LVDSPDIQPVGTCEK Unmodified 1656.8029 0.80288668 149 B4DZR9;Q9UQR0 SCML2 Sex comb on midleg-like protein 2 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 115 109.19 2 1.8553E-08 3 73349 20150910_Q1_SA_NiHu_Masterprac_group10_C 90.853 65.618 4089400 0 1831500 589230 476760 0 1191900 5029 149 4974 22192;22193;22194;22195;22196 14714;14715;14716 14716 3 LVEAEMDGAAAAK Unmodified 1274.6177 0.61765209 137 Q5BJF6-8;Q5BJF6-5;Q5BJF6-6;B4DX73;Q5BJF6-7;Q5BJF6-2;Q5BJF6-3;Q5BJF6-4;Q5BJF6;Q5T4C3;Q5T4C6;Q5T4C2;Q5BJF6-9 ODF2 Outer dense fiber protein 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 89.007 82.271 2 0.018698 1 56203 20150910_Q1_SA_NiHu_Masterprac_group10_B 49.356 25.632 1847000 0 323700 0 0 394370 1129000 5030 137 4975 22197;22198;22199 14717 14717 1 LVEALAAATEK Unmodified 1114.6234 0.6233894 1440 Q9BRJ7 NUDT16L1 Protein syndesmos yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 113.25 105.72 2 1.1741E-29 4 76686 20150910_Q1_SA_NiHu_Masterprac_group13_C 126.71 68.276 35157000 2238100 8022000 5303800 1659700 0 17933000 5031 1440 4976 22200;22201;22202;22203;22204 14718;14719;14720;14721 14718 4 LVEALAAATEKQK Unmodified 1370.7769 0.77692993 1440 Q9BRJ7 NUDT16L1 Protein syndesmos yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 4 2 102.25 93.402 2;3 3.2294E-110 11 62784 20150910_Q1_SA_NiHu_Masterprac_group13_B 152.96 95.073 664560000 50529000 139140000 116980000 41784000 72627000 243510000 5032 1440 4977 22205;22206;22207;22208;22209;22210;22211;22212;22213;22214;22215;22216;22217;22218;22219 14722;14723;14724;14725;14726;14727;14728;14729;14730;14731;14732 14723 9 LVEALAAATEKQKK Unmodified 1498.8719 0.87189295 1440 Q9BRJ7 NUDT16L1 Protein syndesmos yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 88.752 81.057 3 2.227E-07 6 55652 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.368 69.579 18360000 869700 3509200 3364300 1721600 1637200 7258100 5033 1440 4978 22220;22221;22222;22223;22224;22225 14733;14734;14735;14736;14737;14738 14734 6 LVEALCAEHQINLIK Unmodified 1749.9447 0.94474031 875 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 133.11 115.26 3 0.0084031 1 82155 20150910_Q1_SA_NiHu_Masterprac_group15_C 68.262 37.173 0 0 0 0 0 0 0 5034 875 4979 22226 14739 14739 1 LVEIDNGKQR Unmodified 1170.6357 0.63568542 783 P02545;P02545-3;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q3BDU5;Q5TCJ4;Q5TCI8;H0YAB0 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 49.234 47.452 2 0.0069424 1 33967 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.815 49.462 1457600 0 574730 0 0 0 882900 5035 783 4980 22227;22228 14740 14740 1 LVEIDNGKQREFESR Unmodified 1818.9224 0.92242497 783 P02545;P02545-3;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q3BDU5;Q5TCJ4;Q5TCI8;H0YAB0 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 2 1 2 88.842 83.227 3;4 0.0021901 4 57016 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.294 39.625 43425000 2462600 12111000 4420900 2426600 4663800 17341000 5036 783 4981 22229;22230;22231;22232;22233;22234;22235;22236;22237 14741;14742;14743;14744 14742 4 LVENCVCLLR Unmodified 1274.6475 0.64751243 275 O60716-32;O60716-31;O60716-29;O60716-27;O60716-30;O60716-28;O60716-26;O60716-25;O60716-24;O60716-23;O60716-21;O60716-19;O60716-22;O60716-20;O60716-16;O60716-18;O60716-15;O60716-17;O60716-13;O60716-11;O60716-14;O60716-12;O60716-10;O60716-8;O60716-9;E9PIE5;O60716-7;O60716-5;C9JZR2;O60716-3;O60716-6;F8WA43;O60716-4;O60716-2;O60716 CTNND1 Catenin delta-1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.32 130.72 2 0.0078923 1 84139 20150910_Q1_SA_NiHu_Masterprac_group10_B 83.862 42.868 5937000 0 5937000 0 0 0 0 5037 275 4982 22238 14745 14745 1 LVETLEDQELK Unmodified 1315.6871 0.68711187 768 O95239;O95239-2;Q2VIQ3 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 113.37 111.56 2 0.022875 1 73117 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.685 30.954 0 0 0 0 0 0 0 5038 768 4983 22239 14746 14746 1 LVEVEWEEHLARNPPTD Unmodified 2032.9854 0.98541915 1509 Q9H9L3 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 132.92 131.07 3 2.5618E-73 3 85712 20150910_Q1_SA_NiHu_Masterprac_group10_B 127.57 97.238 69145000 0 21870000 0 28350000 0 18925000 5039 1509 4984 22240;22241;22242 14747;14748;14749 14749 3 LVFLEDGTSQVRKEPK Unmodified 1844.9996 0.99961265 1280 Q8IWC1-2;Q8IWC1;H7BY77;Q8IWC1-3 MAP7D3 MAP7 domain-containing protein 3 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 119.19 109.03 3 0.01946 1 76994 20150910_Q1_SA_NiHu_Masterprac_group15_C 47.621 15.092 5218400 0 693420 1320200 0 1204800 2000000 5040 1280 4985 22243;22244;22245;22246 14750 14750 1 LVGMSEACLHRK Unmodified 1399.7064 0.7064243 822 P10828;C9JJM3;C9JZS5;C9JHC2;C9JTN1 THRB Thyroid hormone receptor beta yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 83.771 75.123 3 0.016741 2 51909 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.796 18.412 1349500 0 0 0 0 571510 778000 5041 822 4986 22247;22248;22249 14751;14752 14751 2 LVHPGVAEVVFVK Unmodified 1392.8129 0.8129215 1465 Q9BY77;Q9BY77-2;B4DMM2 POLDIP3 Polymerase delta-interacting protein 3 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 132.93 121.53 3 4.266E-74 2 81891 20150910_Q1_SA_NiHu_Masterprac_group15_C 138.42 113.55 25353000 0 0 0 0 13525000 11828000 5042 1465 4987 22250;22251 14753;14754 14754 2 LVHPGVAEVVFVKK Unmodified 1520.9079 0.90788452 1465 Q9BY77;Q9BY77-2;B4DMM2 POLDIP3 Polymerase delta-interacting protein 3 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 130.02 117.14 3 5.7552E-43 3 76667 20150910_Q1_SA_NiHu_Masterprac_group10_C 124.48 118.35 21291000 6882900 0 6216300 0 0 8191900 5043 1465 4988 22252;22253;22254 14755;14756;14757 14757 3 LVIDEPAKEK Unmodified 1140.639 0.63903946 954 P51858;A8K8G0;Q5SZ08;Q5SZ07;B7Z525 HDGF Hepatoma-derived growth factor yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 74.604 67.176 2 0.0075304 2 52278 20150910_Q1_SA_NiHu_Masterprac_group15_C 94.692 54.844 10964000 905720 1623700 1170500 677530 3420800 3165800 5044 954 4989 22255;22256;22257;22258;22259;22260 14758;14759 14758 2 LVIDEPAKEKNEK Unmodified 1511.8195 0.81952302 954 P51858;A8K8G0;Q5SZ08;Q5SZ07;B7Z525 HDGF Hepatoma-derived growth factor yes no 0 0 2 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 63.247 55.597 3 0.0051362 4 44816 20150910_Q1_SA_NiHu_Masterprac_group15_C 80.69 45.033 17280000 2088900 0 2813300 1921400 3110100 7346200 5045 954 4990 22261;22262;22263;22264;22265 14760;14761;14762;14763 14762 4 LVILANNCPALR Unmodified 1352.7598 0.75984008 342 E5RI99;P62888;E5RJH3 RPL30 60S ribosomal protein L30 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 133.06 132.76 2 4.0479E-167 2 86185 20150910_Q1_SA_NiHu_Masterprac_group13_B 172.56 147.22 82023000 0 11355000 0 70668000 0 0 5046 342 4991 22266;22267 14764;14765 14764 2 LVILANNCPALRK Unmodified 1480.8548 0.85480309 342 E5RI99;P62888 RPL30 60S ribosomal protein L30 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 8 6 19 6 130.28 118.44 2;3 0 41 81676 20150910_Q1_SA_NiHu_Masterprac_group13_C 205.52 185.09 18754000000 12381000000 196330000 271000000 2937100000 2561000000 407450000 5047 342 4992 22268;22269;22270;22271;22272;22273;22274;22275;22276;22277;22278;22279;22280;22281;22282;22283;22284;22285;22286;22287;22288;22289;22290;22291;22292;22293;22294;22295;22296;22297;22298;22299;22300;22301;22302;22303;22304;22305;22306;22307;22308;22309;22310;22311;22312;22313;22314;22315;22316 14766;14767;14768;14769;14770;14771;14772;14773;14774;14775;14776;14777;14778;14779;14780;14781;14782;14783;14784;14785;14786;14787;14788;14789;14790;14791;14792;14793;14794;14795;14796;14797;14798;14799;14800;14801;14802;14803;14804;14805;14806 14772 40 LVLLTASK Unmodified 843.54295 0.54295423 683 Q96CP2;I3L1Y9;I3L4I0 FLYWCH2 FLYWCH family member 2 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1 115.42 106.26 1;2 2.3809E-16 6 70012 20150910_Q1_SA_NiHu_Masterprac_group13_B 118.74 69.987 167000000 15793000 29167000 31940000 19113000 19163000 51826000 5048 683 4993 22317;22318;22319;22320;22321;22322;22323;22324 14807;14808;14809;14810;14811;14812 14807 6 LVLLTASKDSTK Unmodified 1274.7446 0.74456717 683 Q96CP2;I3L1Y9;I3L4I0 FLYWCH2 FLYWCH family member 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 1 2 2 98.769 89.839 2;3 4.5427E-79 13 61133 20150910_Q1_SA_NiHu_Masterprac_group10_C 145.81 145.81 154280000 42147000 14501000 35071000 18318000 18762000 25480000 5049 683 4994 22325;22326;22327;22328;22329;22330;22331;22332;22333;22334;22335;22336;22337 14813;14814;14815;14816;14817;14818;14819;14820;14821;14822;14823;14824;14825 14825 13 LVLNTAVPDRLPARER Unmodified 1819.0428 0.042814873 1431 Q99741 CDC6 Cell division control protein 6 homolog yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 131.12 115.43 4 0.017537 1 76711 20150910_Q1_SA_NiHu_Masterprac_group10_C 40.941 28.736 8635700 8635700 0 0 0 0 0 5050 1431 4995 22338 14826 14826 1 LVLNYDPGDPK Unmodified 1229.6292 0.62920306 1520 Q9HCI7 MSL2 E3 ubiquitin-protein ligase MSL2 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 123.17 118.41 2 0.029444 1 80564 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.786 21.831 0 0 0 0 0 0 0 5051 1520 4996 22339 14827 14827 1 LVLVGDGGTGK Unmodified 1014.571 0.5709599 173 P62826;B5MDF5;F5H018;H0YFC6 RAN GTP-binding nuclear protein Ran yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 98.516 89.209 2 2.2646E-05 5 61140 20150910_Q1_SA_NiHu_Masterprac_group15_B 104.07 28.504 80415000 19379000 0 9259300 8124700 18141000 25511000 5052 173 4997 22340;22341;22342;22343;22344;22345 14828;14829;14830;14831;14832 14830 5 LVMAGETTNSR Unmodified 1177.5761 0.57612163 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 67.19 60.654 2 0.015842 1 47939 20150910_Q1_SA_NiHu_Masterprac_group15_C 58.592 31.806 3021900 0 394570 0 0 534900 2092400 5053 487 4998 22346;22347;22348 14833 14833 1 LVMDQISEAR Unmodified 1160.586 0.58595803 652 Q9H0E3;H7BXF5;Q9H0E3-3;Q9H0E3-2 SAP130 Histone deacetylase complex subunit SAP130 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 109.27 105.61 2 0.01406 1 72362 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.786 39.235 1728500 0 0 0 0 0 1728500 5054 652 4999 22349 14834 14834 1 LVMESVTLPLETLVSPHEESISLCPEEQLVIER Unmodified 3775.9264 0.92637922 1324 Q8NEZ4;Q8NEZ4-3;H0YMU7 KMT2C Histone-lysine N-methyltransferase 2C yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.13 126.17 6 0.03482 1 85950 20150910_Q1_SA_NiHu_Masterprac_group15_B 15.598 9.0806 4818500 0 0 0 0 0 4818500 5055 1324 5000 22350 14835 14835 1 LVNELTEFAK Unmodified 1162.6234 0.6233894 294 CON__P02769 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 3 135.54 130.02 2 6.2302E-35 7 83192 20150910_Q1_SA_NiHu_Masterprac_group10_C 134.57 102.53 5023900000 76626000 2133100000 0 1259000000 1800700 1553400000 + 5056 294 5001 22351;22352;22353;22354;22355;22356;22357;22358;22359 14836;14837;14838;14839;14840;14841;14842 14842 7 LVNEVTEFAK Unmodified 1148.6077 0.60773933 293 P02768;CON__P02768-1;E7ESU5;Q8IUK7;H7C013 ALB Serum albumin yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 117.93 117.93 2 0.022902 2 76149 20150910_Q1_SA_NiHu_Masterprac_group13_B 61.213 42.234 759890 0 0 0 759890 0 0 + 5057 293 5002 22360;22361 14843;14844 14843 2 LVNSQCEFER Unmodified 1280.5819 0.58193529 1529 Q9NPI1;Q9NPI1-2 BRD7 Bromodomain-containing protein 7 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 82.733 75.171 2 0.015635 3 51869 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.385 44.823 5783000 611910 823850 816340 492020 1252700 1786200 5058 1529 5003 22362;22363;22364;22365;22366;22367 14845;14846;14847 14845 3 LVNTTITPEPEPKPQPNSR Unmodified 2117.1117 0.1116823 1265 Q86V48-2;Q86V48-3;Q86V48 LUZP1 Leucine zipper protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 103.36 93.684 3 0.008391 1 62773 20150910_Q1_SA_NiHu_Masterprac_group10_B 42.58 26.978 6936600 0 1124500 1047900 0 354650 4409500 5059 1265 5004 22368;22369;22370;22371 14848 14848 1 LVPDPPNDLRK Unmodified 1262.6983 0.69828568 769 O95243-2 MBD4 Methyl-CpG-binding domain protein 4 no no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 94.428 85.606 3 0.014986 1 58130 20150910_Q1_SA_NiHu_Masterprac_group13_B 51.762 32.952 3610000 1738000 0 598330 1273700 0 0 5060 769 5005 22372;22373;22374 14849 14849 1 LVPEAVGDQK Unmodified 1054.5659 0.56587452 938 P49589;P49589-3;P49589-2;B4DKY1;A8MVQ3 CARS Cysteine--tRNA ligase, cytoplasmic yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 2 2 2 74.587 67.167 2 4.0327E-05 4 47153 20150910_Q1_SA_NiHu_Masterprac_group15_B 109.44 69.381 76257000 16071000 6310100 6904500 10435000 24398000 12139000 5061 938 5006 22375;22376;22377;22378;22379;22380;22381;22382;22383;22384;22385;22386 14850;14851;14852;14853 14851 4 LVPGLQDSEEK Unmodified 1213.619 0.6190323 1445 Q9BSM1-3;Q9BSM1 PCGF1 Polycomb group RING finger protein 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 96.527 89.591 2 0.028261 1 65836 20150910_Q1_SA_NiHu_Masterprac_group15_C 51.979 37.299 9481300 0 1424500 0 0 1755300 6301500 5062 1445 5007 22387;22388;22389 14854 14854 1 LVPLDYGEDDK Unmodified 1262.603 0.60304789 942 P49756 RBM25 RNA-binding protein 25 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 122.53 114.19 2 0.026933 1 74211 20150910_Q1_SA_NiHu_Masterprac_group10_B 52.391 30.062 1695400 969990 725390 0 0 0 0 5063 942 5008 22390;22391 14855 14855 1 LVPLDYGEDDKNATKGTVNTEEK Unmodified 2535.234 0.23404186 942 P49756 RBM25 RNA-binding protein 25 yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 111.24 102.26 4 0.000503 2 69781 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.15 42.925 19264000 4847400 2917100 2825800 2652400 1538400 4482700 5064 942 5009 22392;22393;22394;22395;22396;22397 14856;14857 14856 2 LVQAFQFTDK Unmodified 1195.6237 0.62372375 1044 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 132.85 122.65 2 1.8897E-62 3 85338 20150910_Q1_SA_NiHu_Masterprac_group13_B 148.56 113.38 1735600000 0 0 33972000 32557000 25086000 1644000000 5065 1044 5010 22398;22399;22400;22401 14858;14859;14860 14858 3 LVQAPLDADGDNVLQEK Unmodified 1823.9265 0.92650729 660 Q02241-2;H7BYN4;Q02241;B4E1K0;H0YKQ5 KIF23 Kinesin-like protein KIF23 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.48 131.87 2 2.7821E-21 1 85435 20150910_Q1_SA_NiHu_Masterprac_group10_B 101.78 61.836 15046000 0 15046000 0 0 0 0 5066 660 5011 22402 14861 14861 1 LVQDVANNTNEEAGDGTTTATVLAR Unmodified 2559.2413 0.2412525 820 P10809;B7Z712;C9JL25;E7EXB4;E7ESH4 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 2 129.49 123.08 2;3 1.3E-96 5 85008 20150910_Q1_SA_NiHu_Masterprac_group15_B 120.42 109.52 22785000 9530100 0 0 932990 0 12321000 5067 820 5012 22403;22404;22405;22406;22407 14862;14863;14864;14865;14866 14863 5 LVQHVVSQNCDGLHLR Unmodified 1873.9581 0.95809897 681 I3L480;I3L1C9;Q9NRC8 SIRT7 NAD-dependent protein deacetylase sirtuin-7 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 2 2 107.19 97.188 3;4 1.0349E-64 3 66224 20150910_Q1_SA_NiHu_Masterprac_group15_B 130.02 107.65 21417000 0 2205900 1027700 0 2570900 15613000 5068 681 5013 22408;22409;22410;22411;22412;22413 14867;14868;14869 14869 3 LVRLKPEELVSK Unmodified 1409.8606 0.86059998 1447 Q9BTC0;Q9BTC0-1 DIDO1 Death-inducer obliterator 1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 110.75 103.1 3 4.696E-10 2 70489 20150910_Q1_SA_NiHu_Masterprac_group15_B 107.09 71.427 6107200 0 2134700 2438200 0 0 1534300 5069 1447 5014 22414;22415;22416 14870;14871 14871 2 LVRVIDQEMQAIGGQK Unmodified 1783.9615 0.96145301 1245 Q7L3T8 PARS2 Probable proline--tRNA ligase, mitochondrial yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.43 131.82 3 2.0988E-50 1 85321 20150910_Q1_SA_NiHu_Masterprac_group10_B 120.54 86.926 16177000 0 16177000 0 0 0 0 5070 1245 5015 22417 14872 14872 1 LVSDSLSEHEK Unmodified 1242.6092 0.6091959 1403 Q96KR1;B5MEH6;H0Y8W1 ZFR Zinc finger RNA-binding protein yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 63.622 57.392 2;3 0.0004345 7 40485 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.618 95.618 21974000 2249200 5934900 1491900 1154300 4253600 6889900 5071 1403 5016 22418;22419;22420;22421;22422;22423;22424;22425;22426;22427;22428 14873;14874;14875;14876;14877;14878;14879 14875 7 LVSDSLSEHEKNKNK Unmodified 1726.885 0.88497683 1403 Q96KR1;B5MEH6;H0Y8W1 ZFR Zinc finger RNA-binding protein yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 43.185 37.988 3;4 1.8953E-05 9 26883 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.46 89.46 16681000 2354100 3739100 2930800 1286000 2192700 4178700 5072 1403 5017 22429;22430;22431;22432;22433;22434;22435;22436;22437;22438;22439;22440 14880;14881;14882;14883;14884;14885;14886;14887;14888 14883 9 LVSEKVDDYEHAAK Unmodified 1602.789 0.78895118 709 O43148;O43148-2;F5H2D9 RNMT mRNA cap guanine-N7 methyltransferase yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 2 2 2 2 81.597 73.981 3;4 8.682E-21 11 52269 20150910_Q1_SA_NiHu_Masterprac_group10_C 112.44 94.234 50750000 8331600 5473400 8316200 13322000 9429800 5877600 5073 709 5018 22441;22442;22443;22444;22445;22446;22447;22448;22449;22450;22451;22452;22453 14889;14890;14891;14892;14893;14894;14895;14896;14897;14898;14899 14899 11 LVSLIGSK Unmodified 815.51165 0.5116541 876 P25786;P25786-2;F5GX11 PSMA1 Proteasome subunit alpha type-1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 104.6 101.34 2 0.034579 1 69014 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.812 1.4291 2066100 0 0 0 0 0 2066100 5074 876 5019 22454 14900 14900 1 LVSLIGSKTQIPTQR Unmodified 1639.9621 0.96210494 876 P25786;P25786-2;F5GX11 PSMA1 Proteasome subunit alpha type-1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 129.65 129.34 3 0.00074005 1 82541 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.483 65.255 2454500 0 1980400 0 474110 0 0 5075 876 5020 22455;22456 14901 14901 1 LVSQIEDAMRK Unmodified 1288.6809 0.68092105 1418 Q96RN5-3;Q96RN5-2;Q96RN5;F8WDM6;F2Z2B7 MED15 Mediator of RNA polymerase II transcription subunit 15 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 119.31 109.16 3 0.0092973 1 74912 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.174 29.53 3999300 0 702280 601410 0 824510 1871100 5076 1418 5021 22457;22458;22459;22460 14902 14902 1 LVSSHKPVQNQKQK Unmodified 1619.9107 0.91073807 698 O14965;A3KFJ0;Q5QPD4;A3KFJ1;Q5QPD2;Q5QPD1;A3KFJ2 AURKA Aurora kinase A yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 13.022 12.846 4 0.031147 1 7538 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.373 31.728 1111800 0 0 0 327250 0 784540 5077 698 5022 22461;22462 14903 14903 1 LVTDLTK Unmodified 788.46437 0.46436956 294;293 CON__P02769;P02768;CON__P02768-1;E7ESU5;H0YA55;D6RHD5;B7WNR0;P02768-2;C9JKR2 ALB Serum albumin no no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 74.276 71.142 1 0.023471 1 49427 20150910_Q1_SA_NiHu_Masterprac_group13_B 58.604 8.5799 54539000 8064100 10083000 0 3862800 0 32528000 + 5078 294;293 5023 22463;22464;22465;22466 14904 14904 1 LVTLRNVSTK Unmodified 1129.6819 0.68190733 1284 Q8IX01-4;Q8IX01-3;Q8IX01 SUGP2 SURP and G-patch domain-containing protein 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 83.153 75.558 2 0.024972 1 52269 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.416 41.671 6772300 529040 653360 1222800 599520 670910 3096700 5079 1284 5024 22467;22468;22469;22470;22471;22472 14905 14905 1 LVTSGAESGNLNTSPSSNQTRNSEK Unmodified 2577.2267 0.22666507 585 Q8NHV4-2;Q8NHV4;G3V3F1 NEDD1 Protein NEDD1 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 76.287 69.507 3 9.073E-05 4 53710 20150910_Q1_SA_NiHu_Masterprac_group15_C 56.29 35.993 5567000 1266700 1579000 0 1233700 1487600 0 5080 585 5025 22473;22474;22475;22476 14906;14907;14908;14909 14907 4 LVVPASQCGSLIGK Unmodified 1427.7806 0.7806351 548 F8VZX2;Q15366-4;Q15366-5;Q15366-3;Q15366;Q15366-2;H3BRU6;G3V0E8;B4DXP5;B4DRD7;F8W0G4;B4DLC0;F8VRG9;F8VXH9;F8W1G6;F8VWQ4;P57721-2;P57721-3;P57721-5;E9PFP8;P57721-4;P57721;H9KV40;H3BND9 PCBP2;PCBP3 Poly(rC)-binding protein 2;Poly(rC)-binding protein 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 131.24 128.45 2 0.0011065 2 83593 20150910_Q1_SA_NiHu_Masterprac_group10_B 74.475 52.154 109520000 0 73173000 0 0 0 36347000 5081 548 5026 22477;22478 14910;14911 14911 2 LVVPASQCGSLIGKGGCK Unmodified 1829.9492 0.94917376 548 F8VZX2;Q15366-4;Q15366-5;Q15366-3;Q15366;Q15366-2;H3BRU6;G3V0E8;B4DXP5;B4DRD7;F8W0G4;B4DLC0;F8VRG9;F8VXH9;F8W1G6;F8VWQ4;H3BND9 PCBP2 Poly(rC)-binding protein 2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 116.54 110.01 3 0.0014969 1 72014 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.826 49.262 10905000 0 7447800 2481000 976330 0 0 5082 548 5027 22479;22480;22481 14912 14912 1 LVVPATQCGSLIGKGGCK Unmodified 1843.9648 0.96482383 1135 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 121.16 115.87 3 0.00165 3 79254 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.936 43.988 45897000 11354000 12030000 0 386920 0 22126000 5083 1135 5028 22482;22483;22484;22485 14913;14914;14915 14913 2 LVVPATQCGSLIGKGGCKIK Unmodified 2085.1439 0.14385083 1135 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 129.91 112.04 4 0.0022413 1 80762 20150910_Q1_SA_NiHu_Masterprac_group13_C 49.425 40.764 7529200 0 0 6908000 0 621110 0 5084 1135 5029 22486;22487 14916 14916 1 LVVQIDNAK Unmodified 998.57605 0.57604528 281 Q15323;CON__Q9UE12;CON__Q15323;CON__A2A5Y0;Q14525;CON__Q14525;CON__Q497I4;CON__REFSEQ:XP_986630;CON__Q9D646;O76009;CON__Q6NTB9;CON__O76009 KRT31;KRT33B;KRT33A Keratin, type I cuticular Ha1;Keratin, type I cuticular Ha3-II;Keratin, type I cuticular Ha3-I yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 91.929 91.929 2 0.012883 2 62150 20150910_Q1_SA_NiHu_Masterprac_group13_B 80.688 42.385 673180 0 0 0 673180 0 0 + 5085 281 5030 22488 14917;14918 14918 2 LVVSTQTALA Unmodified 1001.5757 0.57571092 294 CON__P02769 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 131.54 120.14 1;2 0.011776 4 85638 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.816 40.498 50953000 4346100 5210500 12150000 0 20269000 8977400 + 5086 294 5031 22489;22490;22491;22492;22493 14919;14920;14921;14922 14920 4 LWDPRTPCNAGTFSQPEK Unmodified 2102.9844 0.9843733 719 O43684-2;O43684;B4DDM6 BUB3 Mitotic checkpoint protein BUB3 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 130.76 121.26 3 1.4538E-110 7 85603 20150910_Q1_SA_NiHu_Masterprac_group15_B 140.75 122.82 180220000 27018000 17554000 25495000 8249700 24502000 77400000 5087 719 5032 22494;22495;22496;22497;22498;22499 14923;14924;14925;14926;14927;14928;14929 14924 7 LWFTPTPHNDK Unmodified 1354.667 0.66698555 1222 Q6KC79-2;Q6KC79 NIPBL Nipped-B-like protein yes no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 127.59 120.02 3 0.005001 3 83384 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.728 48.701 5609400 0 0 0 802640 912640 3894100 5088 1222 5033 22500;22501;22502 14930;14931;14932 14931 3 LWSWGRNEK Unmodified 1174.5883 0.5883413 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 2 108.52 101.33 2 0.015432 3 67178 20150910_Q1_SA_NiHu_Masterprac_group13_B 104.2 74.531 18786000 0 1831700 2582400 3628500 346710 10397000 5089 1575 5034 22503;22504;22505;22506;22507;22508 14933;14934;14935 14933 3 LWSWGRNEKGQLGHGDTK Unmodified 2068.0239 0.023870345 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 2 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 103.52 94.007 4 0.00096156 3 64310 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.329 42.384 83928000 16554000 0 13008000 11043000 7828800 35495000 5090 1575 5035 22509;22510;22511;22512;22513 14936;14937;14938 14937 3 LWTLVSEQTRVNAAKNK Unmodified 1957.0745 0.074508932 447 E9PJD9;P46776;E9PLL6 RPL27A 60S ribosomal protein L27a yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 130.29 114.6 3 0.006329 1 75897 20150910_Q1_SA_NiHu_Masterprac_group10_C 60.55 42.985 4508300 4508300 0 0 0 0 0 5091 447 5036 22514 14939 14939 1 LWVSSLEK Unmodified 960.52803 0.52803245 850 P17544-4;P17544-2;P17544-3;P17544-6;P17544 ATF7 Cyclic AMP-dependent transcription factor ATF-7 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 130.28 129.98 2 0.014732 1 83075 20150910_Q1_SA_NiHu_Masterprac_group10_B 87.639 36.835 5086100 0 3609500 0 1476600 0 0 5092 850 5037 22515;22516 14940 14940 1 LYCICKTPYDESK Unmodified 1675.7586 0.75857903 1061 Q12830-4;Q12830-2;Q12830;E9PE19 BPTF Nucleosome-remodeling factor subunit BPTF yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 2 106.36 97.418 3 0.0022755 6 66381 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.229 54.882 11218000 1832300 0 1108600 928560 1533600 5815400 5093 1061 5038 22517;22518;22519;22520;22521;22522;22523 14941;14942;14943;14944;14945;14946 14942 6 LYDEGDPSEK Unmodified 1151.4982 0.49824846 1417 Q96RE7 NACC1 Nucleus accumbens-associated protein 1 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 52.325 48.188 2 0.0086818 2 34431 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.102 45.715 6596200 0 1191400 3580300 203600 0 1620900 5094 1417 5039 22524;22525;22526;22527 14947;14948 14948 2 LYDVPANSMR Unmodified 1164.5597 0.55974328 719 O43684-2;O43684 BUB3 Mitotic checkpoint protein BUB3 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 105.39 98.321 2 0.0095763 2 66882 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.566 52.986 9945600 832630 1292800 913840 903220 0 6003200 5095 719 5040 22528;22529;22530;22531;22532 14949;14950 14950 2 LYEMVSYCQNISK Unmodified 1633.748 0.74801434 922 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 131.43 129.57 2 0.0011454 3 86818 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.412 67.32 26891000 0 8190600 0 5247600 0 13453000 5096 922 5041 22533;22534;22535 14951;14952;14953 14952 3 LYGAQFHPEVGLTENGK Unmodified 1858.9214 0.92136233 129 F8W720;B4DUT7;P49915 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.86 126.9 3 1.9102E-21 1 86741 20150910_Q1_SA_NiHu_Masterprac_group15_B 102.72 74.664 34149000 0 0 0 0 0 34149000 5097 129 5042 22536 14954 14954 1 LYGDADYLEER Unmodified 1342.6041 0.60411052 852 P17812;B4DR64 CTPS1 CTP synthase 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 119.9 118.08 2 0.010653 2 80304 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.121 45.985 4677100 0 1580600 0 607320 0 2489200 5098 852 5043 22537;22538;22539 14955;14956 14955 2 LYGNDFSQTTISR Unmodified 1500.7209 0.72087161 627 H0YLB5;P14859-4;P14859-5;P14859-3;P14859;P14859-2;H0YLC5;E9PQI0;H0YNL2;E9PIN6;P09086-4;H0YNW1;Q9UKI9-3;Q9UKI9;Q9UKI9-2;P09086-3;P09086-2;P09086;H0YLL6;E9PNC9;P09086-5;B5ME60;H0YKT2 POU2F1;POU2F3;POU2F2 POU domain, class 2, transcription factor 1;POU domain, class 2, transcription factor 2;POU domain, class 2, transcription factor 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 115.71 112.92 2 0.018793 1 76963 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.298 20.395 1943400 0 308640 0 0 0 1634800 5099 627 5044 22540;22541 14957 14957 1 LYGSAGPPPTGEEDTAEKDEL Unmodified 2174.9855 0.98553831 823 P11021 HSPA5 78 kDa glucose-regulated protein yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 131.52 115.83 2 0.0090866 1 77041 20150910_Q1_SA_NiHu_Masterprac_group10_C 46.925 37.662 1801300 1801300 0 0 0 0 0 5100 823 5045 22542 14958 14958 1 LYGYFHDATR Unmodified 1241.5829 0.58292157 698 O14965;A3KFJ0;Q5QPD4 AURKA Aurora kinase A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 98.059 95.501 3 0.0041466 1 65291 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.258 54.843 2051700 0 0 0 0 0 2051700 5101 698 5046 22543 14959 14959 1 LYHNEVEIEK Unmodified 1272.635 0.63501672 1110 Q14683;H0Y7K8 SMC1A Structural maintenance of chromosomes protein 1A yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 73.096 71.707 3 0.0065611 1 49872 20150910_Q1_SA_NiHu_Masterprac_group10_B 83.883 50.795 5115700 0 1539500 0 985690 0 2590500 5102 1110 5047 22544;22545;22546 14960 14960 1 LYHNEVEIEKLNK Unmodified 1627.857 0.85697116 1110 Q14683;H0Y7K8 SMC1A Structural maintenance of chromosomes protein 1A yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 91.406 89.423 3 0.027833 1 61322 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.196 49.54 2727200 0 1156600 0 0 0 1570500 5103 1110 5048 22547;22548 14961 14961 0 LYKDNQGNLKGDGLCCYLK Unmodified 2258.0824 0.082372781 720 O43719;E9PFP2;Q5H919;Q5H918 HTATSF1 HIV Tat-specific factor 1 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 124.53 121.75 4 0.033573 1 78044 20150910_Q1_SA_NiHu_Masterprac_group10_B 33.872 17.888 1562500 0 1300800 0 0 0 261730 5104 720 5049 22549;22550 14962 14962 1 LYKNKDMIQTLTNK Oxidation (M) 1724.9131 0.91310583 1615 Q9UNG2 TNFSF18 Tumor necrosis factor ligand superfamily member 18 yes yes 0 1 2 By matching By MS/MS By matching By matching By matching By matching 1 132.68 132.08 3 0.032203 1 85645 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.03 29.366 13091000 0 13091000 0 0 0 0 5105 1615 5050 22551 14963 14963 179 1 LYLADPMK Unmodified 949.49429 0.49428948 937 P49458;E9PE20;P49458-2 SRP9 Signal recognition particle 9 kDa protein yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 2 128.93 116.71 2 0.017081 2 85328 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.279 48.106 41495000 3754000 0 10318000 0 3486900 23936000 5106 937 5051 22552;22553;22554;22555;22556 14964;14965 14965 2 LYLADPMKAR Unmodified 1176.6325 0.6325143 937 P49458;E9PE20;P49458-2 SRP9 Signal recognition particle 9 kDa protein yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 123.07 111.91 2 0.010146 3 76557 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.495 54.62 25741000 3622600 0 7256600 2854100 305470 11702000 5107 937 5052 22557;22558;22559;22560;22561 14966;14967;14968 14967 3 LYLIDLAGSEDNRRTGNK Unmodified 2034.0494 0.049416394 1115 Q14807;B7Z265;H3BRB3 KIF22 Kinesin-like protein KIF22 yes no 0 0 2 By matching By matching By MS/MS By MS/MS By matching By matching 1 2 132.68 126.68 3;4 0.0058401 3 85527 20150910_Q1_SA_NiHu_Masterprac_group13_B 54.09 26.375 67074000 0 0 54664000 12409000 0 0 5108 1115 5053 22562;22563;22564 14969;14970;14971 14969 3 LYNFCNSSCVAK Unmodified 1461.6381 0.63806996 1585 Q9UBW7 ZMYM2 Zinc finger MYM-type protein 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 109.13 104.29 2 0.0018566 1 71267 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.169 71.161 4295200 798760 1069600 0 561400 0 1865400 5109 1585 5054 22565;22566;22567;22568 14972 14972 1 LYQDTHQEYAR Unmodified 1422.6528 0.65279205 1632 Q9Y2F5 KIAA0947 Uncharacterized protein KIAA0947 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 57.447 52.333 3 0.015748 1 37405 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.551 37.584 2565800 446400 340090 0 363790 644550 770920 5110 1632 5055 22569;22570;22571;22572;22573 14973 14973 1 LYQKPEGNHIIK Unmodified 1438.7932 0.79324869 572 Q149N8-5;F8WEL0;Q149N8-2;Q149N8-4;Q149N8;H7C2W2 SHPRH E3 ubiquitin-protein ligase SHPRH yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 59.761 58.606 3 0.020399 1 41370 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.979 26.505 900520 0 0 0 0 0 900520 5111 572 5056 22574 14974 14974 1 LYRETNEPVKTK Unmodified 1476.7936 0.79364262 60 B1AHC9;B1AHC8;P12956;F5H1I8;B1AHC7 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 47.22 41.103 3 0.01252 2 29242 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.393 39.45 4507700 0 0 836250 618440 1340700 1712300 5112 60 5057 22575;22576;22577;22578 14975;14976 14975 2 LYRPGSVAYVSR Unmodified 1366.7357 0.73573382 168 B4E3P0;P53396-2;P53396;E7ENH9 ACLY ATP-citrate synthase yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 100.96 91.268 3 0.0034218 2 68471 20150910_Q1_SA_NiHu_Masterprac_group13_C 70.563 48.235 12556000 1051800 2238400 827260 0 3961700 4476800 5113 168 5058 22579;22580;22581;22582;22583 14977;14978 14977 2 LYSENEGMASNQGK Unmodified 1526.6671 0.66712148 324 D6RHZ1;D6RIH3;D6RCE9;D6RD44;Q96EI5;Q96EI5-2 TCEAL4 Transcription elongation factor A protein-like 4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 60.624 59.236 2 0.0027679 2 42079 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.287 31.804 2668100 0 652840 0 270450 0 1744900 5114 324 5059 22584;22585;22586 14979;14980 14980 2 LYSTIRPYLESK Unmodified 1468.7926 0.79257999 414 Q5JTH9-2;E9PCK7;Q5JTH9;F5H456 RRP12 RRP12-like protein yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 2 1 1 1 1 126.96 117.48 2;3 9.0694E-141 4 76803 20150910_Q1_SA_NiHu_Masterprac_group10_C 164.48 131.4 48554000 14577000 2721400 11993000 2579100 7392800 9290700 5115 414 5060 22587;22588;22589;22590;22591;22592;22593 14981;14982;14983;14984 14984 4 LYTEDEFEK Unmodified 1172.5237 0.52373493 1496 Q9H6R0;Q9H6R0-2;I3L1L6;Q05BE5 DHX33 Putative ATP-dependent RNA helicase DHX33 yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 2 100.79 92.546 2 0.00032084 3 63401 20150910_Q1_SA_NiHu_Masterprac_group15_B 111.61 63.647 14779000 0 1872200 1727400 560050 3181800 7437700 5116 1496 5061 22594;22595;22596;22597;22598;22599;22600 14985;14986;14987 14986 3 LYTGPGLAIHCMQVHK Unmodified 1823.9175 0.9174797 40 A8MTG3;O43670-2;O43670;E1P660;H0Y3M2 ZNF207 Zinc finger protein 207 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 2 2 1 129.68 128.44 3;4 8.3703E-98 4 85478 20150910_Q1_SA_NiHu_Masterprac_group15_B 139.78 113.79 35760000 0 18907000 0 6268400 0 10585000 5117 40 5062 22601;22602;22603;22604;22605 14988;14989;14990;14991 14989 4 MAAAGGGGGGGRYYGGGSEGGRAPK Unmodified 2197.0083 0.0082966355 838 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 2 3 3 3 3 60.55 53.571 3;4 1.2181E-12 13 37862 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.538 54.759 1146800000 170590000 86805000 262270000 234500000 205570000 187100000 5118 838 5063 22606;22607;22608;22609;22610;22611;22612;22613;22614;22615;22616;22617;22618;22619;22620;22621;22622;22623;22624 14992;14993;14994;14995;14996;14997;14998;14999;15000;15001;15002;15003;15004 14997 13 MAAAGGGGGGGRYYGGGSEGGRAPK Oxidation (M) 2213.0032 0.0032112576 838 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 0 1 2 By MS/MS By MS/MS By matching By matching By matching By matching 3 2 1 1 2 1 51.2 44.768 3 2.2073E-07 3 33434 20150910_Q1_SA_NiHu_Masterprac_group10_C 60.325 46.471 62663000 18595000 7402100 9409500 8949500 8815300 9492500 5119 838 5063 22625;22626;22627;22628;22629;22630;22631;22632;22633;22634 15005;15006;15007 15007 87 3 MAAHTMGNATVGR Unmodified 1315.6125 0.61252391 913 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 2 1 57.923 50.089 3 0.004334 2 41193 20150910_Q1_SA_NiHu_Masterprac_group15_C 61.03 45.886 2095300 0 462810 0 0 663380 969100 5120 913 5064 22635;22636;22637;22638 15008;15009 15009 2 MAAHTMGNATVGRR Unmodified 1471.7136 0.71363494 913 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 47.627 42.192 3 0.0021762 2 30019 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.04 42.1 36090000 0 5329200 6782100 2735100 8159800 13084000 5121 913 5065 22639;22640;22641;22642;22643 15010;15011 15010 2 MAAMKEKPAENTLFK Unmodified 1707.8688 0.86879818 1118 Q14966-3;Q14966;Q14966-5;F5H6M8;E7EUZ3 ZNF638 Zinc finger protein 638 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 95.005 93.197 3 0.02654 1 62670 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.181 34.402 0 0 0 0 0 0 0 5122 1118 5066 22644 15012 15012 1 MAAPIDRVGQTIER Unmodified 1555.8141 0.81406049 956 P52272-2;P52272;Q59ES8;F5H7Z1 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 114.9 112.62 3 0.018115 1 76931 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.159 19.51 9190000 0 0 0 1337000 0 7853000 5123 956 5067 22645;22646 15013 15013 1 MAAQSAPKVVLK Unmodified 1241.7166 0.71657828 1649 Q9Y3Y2-4;Q9Y3Y2;Q9Y3Y2-3 CHTOP Chromatin target of PRMT1 protein yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 2 1 1 1 1 90.087 81.332 3 0.0073405 2 55880 20150910_Q1_SA_NiHu_Masterprac_group10_C 61.958 32.425 6496100 2255000 0 909840 2324500 635690 371090 5124 1649 5068 22647;22648;22649;22650;22651;22652 15014;15015 15015 2 MAECEAENEDLLKK Unmodified 1678.7542 0.75422193 506 F5H0W5;Q9BR77-2;Q9BR77;F5H5Q8 CCDC77 Coiled-coil domain-containing protein 77 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 96.579 86.928 3 0.030249 1 58999 20150910_Q1_SA_NiHu_Masterprac_group10_B 35.657 20.866 1056800 0 609760 446990 0 0 0 5125 506 5069 22653;22654 15016 15016 1 MAECYTMLKQDK Unmodified 1516.6724 0.67240656 1599 Q9UJX3-2;Q9UJX3;F8VYX8 ANAPC7 Anaphase-promoting complex subunit 7 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 94.55 87.436 3 0.039592 1 59256 20150910_Q1_SA_NiHu_Masterprac_group10_B 44.829 30.038 3046600 728770 1070300 0 374290 873180 0 5126 1599 5070 22655;22656;22657;22658 15017 15017 1 MAEESSSSSSSSSPTAATSQQQQLKNK Unmodified 2785.2672 0.26720926 1090 Q13620-1;Q13620 CUL4B Cullin-4B yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 65.726 59.208 3 0.003552 2 41581 20150910_Q1_SA_NiHu_Masterprac_group15_B 36.935 25.129 3133400 0 625960 1422400 0 0 1085000 5127 1090 5071 22659;22660;22661 15018;15019 15018 2 MAEPFTK Unmodified 822.39458 0.39457544 227 C9J4N8;Q9HAV4;E7EQN7;E7EQK9 XPO5 Exportin-5 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 82.206 73.152 2 0.0067682 2 57272 20150910_Q1_SA_NiHu_Masterprac_group13_C 94.662 51.748 8720900 1183100 1635900 1733100 0 1456600 2712100 5128 227 5072 22662;22663;22664;22665;22666 15020;15021 15020 2 MAFTCSFCK Unmodified 1150.461 0.46095722 1177 Q5BKZ1;Q5BKZ1-3 ZNF326 DBIRD complex subunit ZNF326 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 123.28 116.23 2 0.0078535 2 79317 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.635 57.787 5366500 2299500 519390 0 0 0 2547600 5129 1177 5073 22667;22668;22669 15022;15023 15022 2 MALNHPYFNDLDNQIK Unmodified 1931.92 0.91998213 799 P06493;P06493-2 CDK1 Cyclin-dependent kinase 1 yes no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 132.96 124.04 3 3.656E-18 3 82007 20150910_Q1_SA_NiHu_Masterprac_group15_C 103.14 77.594 18026000 0 0 0 15922000 2103800 0 5130 799 5074 22670;22671 15024;15025;15026 15025 3 MALNHPYFNDLDNQIK Oxidation (M) 1947.9149 0.91489675 799 P06493;P06493-2 CDK1 Cyclin-dependent kinase 1 yes no 0 1 0 By matching By matching By matching By matching By MS/MS By matching 1 1 132.11 114.24 3 0.010672 1 81059 20150910_Q1_SA_NiHu_Masterprac_group15_C 62.104 25.176 7741600 0 0 6305400 0 1436200 0 5131 799 5074 22672;22673 15027 15027 79 1 MAMEMRLPVARK Acetyl (Protein N-term);Oxidation (M) 1489.7567 0.75674531 10 A3KFL1;A3KFL4;B4DKK6;A3KFL5;A3KFL2;Q13868 EXOSC2 Exosome complex component RRP4 yes no 1 1 2 By matching By matching By matching By matching By MS/MS By matching 1 133.37 115.52 3 0.012556 1 82446 20150910_Q1_SA_NiHu_Masterprac_group15_C 43.958 15.597 8887100 0 0 0 0 8887100 0 5132 10 5075 22674 15028 15028 0 1 MANKANTSGDFEK Unmodified 1411.6402 0.64017845 945;1251 P49792;E9PGT0;P0DJD0;P0DJD1;F8VYC4;Q99666;O14715;Q7Z3J3;B4DZH4 RANBP2;RGPD1;RGPD2;RGPD5;RGPD8;RGPD4 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8;RanBP2-like and GRIP domain-containing protein 4 no no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 2 44.221 39.481 2;3 1.109E-09 5 28003 20150910_Q1_SA_NiHu_Masterprac_group10_B 105.95 76.995 14118000 1870200 2113900 6975000 1296200 681990 1180900 5133 945;1251 5076 22675;22676;22677;22678;22679;22680;22681;22682;22683;22684;22685 15029;15030;15031;15032;15033 15033 5 MAPALSGANLTSPRVPLSAYER Oxidation (M) 2316.1896 0.18961504 1623 Q9UQ35;F5GWZ7 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 1 1 By matching By MS/MS By matching By matching By matching By matching 1 132.97 132.36 3 0.001687 1 85950 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.712 46.332 20909000 0 20909000 0 0 0 0 5134 1623 5077 22686 15034 15034 181 1 MAPTPIPTRSPSDSSTASTPVAEQIER Unmodified 2825.3865 0.38653653 47 Q16643;Q16643-2;A8MV58;F8W9Z3;D6R9Q9 DBN1 Drebrin yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 131.19 126.23 3 6.6746E-10 1 86002 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.238 43.95 0 0 0 0 0 0 0 5135 47 5078 22687 15035 15035 1 MAPVPLDDSNRPASLTK Unmodified 1810.9247 0.92473315 1563;452 Q9NYF8-2;Q9NYF8;Q9NYF8-4;E9PK09;E9PQN2;E9PKI6;E9PJA7;Q9NYF8-3;E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 120.13 111.75 3 7.4464E-05 6 80094 20150910_Q1_SA_NiHu_Masterprac_group13_C 87.824 69.155 88347000 0 8468500 41353000 18137000 3254200 17135000 5136 1563;452 5079 22688;22689;22690;22691;22692 15036;15037;15038;15039;15040;15041 15038 6 MAPVPLDDSNRPASLTKDR Unmodified 2082.0528 0.052787212 1563;452 Q9NYF8-2;Q9NYF8;Q9NYF8-4;E9PK09;E9PQN2;E9PKI6;E9PJA7;Q9NYF8-3;E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 112.88 103.78 4 0.006745 1 71054 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.37 32.051 12244000 3392200 1085000 2188000 873080 427500 4278300 5137 1563;452 5080 22693;22694;22695;22696;22697;22698 15042 15042 1 MAQRQLLNK Unmodified 1100.6124 0.61244756 535 Q96RL1;F8VQY2;Q96RL1-3;F2Z2T8 UIMC1 BRCA1-A complex subunit RAP80 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 54.808 47.112 2 0.030819 1 38800 20150910_Q1_SA_NiHu_Masterprac_group13_C 82.426 41.199 1976300 0 1010900 965390 0 0 0 5138 535 5081 22699;22700 15043 15043 1 MASATSSSQRDWGK Unmodified 1510.6834 0.68344025 175 B5ME40;F5GXG0;Q96T88 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 57.012 50.672 2;3 1.3223E-41 10 36274 20150910_Q1_SA_NiHu_Masterprac_group10_B 119.21 119.21 36156000 2318800 4508400 6913600 2967400 4181700 15266000 5139 175 5082 22701;22702;22703;22704;22705;22706;22707;22708;22709;22710;22711 15044;15045;15046;15047;15048;15049;15050;15051;15052;15053 15050 9 MATSVVPK Unmodified 831.45242 0.45242467 1180 Q5FWF5;Q5FWF5-2 ESCO1 N-acetyltransferase ESCO1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 62.242 61.665 2 0.027426 1 43153 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.26 20.577 1136800 0 0 0 320830 0 815990 5140 1180 5083 22712;22713 15054 15054 1 MCDSHYLESR Unmodified 1296.5227 0.52270585 434 E9PH13;P49759;P49759-3;F8WBF5;P49759-2 CLK1 Dual specificity protein kinase CLK1 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 2 2 1 1 1 66.497 60.939 2;3 0.0031326 2 44090 20150910_Q1_SA_NiHu_Masterprac_group10_C 91.549 87.033 18003000 4213800 1439600 2053000 6983900 0 3312900 5141 434 5084 22714;22715;22716;22717;22718;22719;22720 15055;15056 15056 2 MCICHLPCRPVKPNIIGEQITSK Unmodified 2750.3852 0.38523686 1248 Q7Z2T5;Q7Z2T5-2 TRMT1L TRMT1-like protein yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 131.35 126.39 4 0.0056251 1 86198 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.296 28.848 12723000 0 0 0 0 0 12723000 5142 1248 5085 22721 15057 15057 1 MCLFAGFQRK Unmodified 1256.6158 0.61581838 1022;1023 Q00839;B3KX72;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 132.75 132.45 3 0.0014124 2 85871 20150910_Q1_SA_NiHu_Masterprac_group13_B 98.582 56.244 11912000 0 6612400 0 5299500 0 0 5143 1022;1023 5086 22722;22723 15058;15059 15058 2 MCSLTFYSK Unmodified 1135.5042 0.50420224 555 Q8TF68-3;F8W6Q3;Q8TF68-2;Q8TF68;E9PHB3;F5H8L7 ZNF384 Zinc finger protein 384 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 124.94 116.72 2 0.014866 3 82145 20150910_Q1_SA_NiHu_Masterprac_group13_C 77.192 50.749 31078000 0 3266200 10644000 6561900 4194400 6411600 5144 555 5087 22724;22725;22726;22727;22728 15060;15061;15062 15060 3 MDADDSRAPK Acetyl (Protein N-term) 1146.4975 0.49753696 1031 Q01813 PFKP 6-phosphofructokinase type C yes yes 1 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 57.771 51.474 2 0.013654 4 36824 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.2 63.801 4250300 0 400970 575830 410670 1133000 1729800 5145 1031 5088 22729;22730;22731;22732;22733 15063;15064;15065;15066 15065 4 MDAGEVTLVNHNSVFK Unmodified 1759.8563 0.85631924 1573 Q9P0U3;Q9P0U3-2;F8VRZ8;F8W0I8;Q6N001 SENP1;DKFZp686L1432 Sentrin-specific protease 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.8 131.19 3 0.0056326 1 84620 20150910_Q1_SA_NiHu_Masterprac_group10_B 47.217 21.675 1504200 0 1504200 0 0 0 0 5146 1573 5089 22734 15067 15067 1 MDANSKDKPPETK Acetyl (Protein N-term) 1501.7083 0.70825802 1219 Q69YH5;Q69YH5-2 CDCA2 Cell division cycle-associated protein 2 yes no 1 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 53.831 47.672 3 0.019798 1 33872 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.149 49.149 10128000 525850 2019000 2561100 672320 915480 3434800 5147 1219 5090 22735;22736;22737;22738;22739;22740 15068 15068 1 MDDKGDPSNEEAPK Acetyl (Protein N-term) 1573.6566 0.65661638 1447 Q9BTC0;Q9BTC0-1;Q9BTC0-2;Q9BTC0-3 DIDO1 Death-inducer obliterator 1 yes no 1 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 1 1 1 1 1 67.861 60.525 2 0.0034769 4 44619 20150910_Q1_SA_NiHu_Masterprac_group10_C 62.287 43.001 11102000 1304900 1457400 2038900 728270 1825400 3747000 5148 1447 5091 22741;22742;22743;22744;22745;22746;22747 15069;15070;15071;15072 15072 4 MDDPTVNWSNER Unmodified 1462.6147 0.61469198 642 H3BR35;P15170;P15170-2 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 2 1 1 113.98 108 2 0.0035965 3 73816 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.03 54.584 4401900 0 1417400 0 0 922450 2062000 5149 642 5092 22748;22749;22750;22751 15073;15074;15075 15073 3 MDEGVVK Acetyl (Protein N-term) 818.3844 0.38440468 1353 Q92576-2;Q92576;E9PE34;B3KP41;D6R9X2;D6RBF0 PHF3 PHD finger protein 3 yes no 1 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 95.958 87.01 1 0.018533 2 59795 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.981 29.832 2437900 0 0 685230 144350 603710 1004600 5150 1353 5093 22752;22753;22754;22755 15076;15077 15077 2 MDENEWGYHGEGNK Unmodified 1664.6525 0.65253405 1503 Q9H8X2 IPPK Inositol-pentakisphosphate 2-kinase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 89.635 80.699 3 0.00092131 1 60443 20150910_Q1_SA_NiHu_Masterprac_group15_C 76.728 68.998 3102700 0 518730 1214600 498450 870910 0 5151 1503 5094 22756;22757;22758;22759 15078 15078 1 MDENQFVAVTSTNAAK Unmodified 1724.8039 0.80394931 118 B4DR31;Q16555;Q8NAN9;F5GWI3;H0YBT4;Q14195;E9PD68;Q14194;Q14195-2;Q14194-2 DPYSL2;DPYSL3;CRMP1 Dihydropyrimidinase-related protein 2;Dihydropyrimidinase-related protein 3;Dihydropyrimidinase-related protein 1 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 123.74 121.89 2 0.0062233 3 78367 20150910_Q1_SA_NiHu_Masterprac_group10_B 47.64 37.188 4293900 0 1259200 0 598030 0 2436700 5152 118 5095 22760;22761;22762 15079;15080;15081 15081 3 MDETDASSAVK Unmodified 1152.4969 0.49686826 1073 Q13148;Q13148-2;B1AKP7;G3V162 TARDBP TAR DNA-binding protein 43 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 57.027 50.79 2 5.8453E-08 3 41547 20150910_Q1_SA_NiHu_Masterprac_group15_C 110.08 78.791 13837000 0 1469500 2404400 1206300 3078600 5677900 5153 1073 5096 22763;22764;22765;22766;22767 15082;15083;15084 15083 3 MDETDASSAVKVK Unmodified 1379.6602 0.66024519 1073 Q13148;Q13148-2;B1AKP7;G3V162 TARDBP TAR DNA-binding protein 43 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 2 2 74.581 67.047 2;3 0 15 46994 20150910_Q1_SA_NiHu_Masterprac_group10_B 208.51 170.52 155230000 20347000 27326000 26382000 14074000 21165000 45936000 5154 1073 5097 22768;22769;22770;22771;22772;22773;22774;22775;22776;22777;22778;22779;22780;22781 15085;15086;15087;15088;15089;15090;15091;15092;15093;15094;15095;15096;15097;15098;15099 15093 15 MDETDASSAVKVK Oxidation (M) 1395.6552 0.65515981 1073 Q13148;Q13148-2;B1AKP7;G3V162 TARDBP TAR DNA-binding protein 43 yes no 0 1 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 56.917 50.508 3 0.01844 2 36066 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.279 77.279 5583500 148180 706610 1208200 432620 1370900 1717000 5155 1073 5097 22782;22783;22784;22785;22786;22787 15100;15101 15100 130 1 MDETDASSAVKVKR Unmodified 1535.7614 0.76135622 1073 Q13148;Q13148-2;B1AKP7;G3V162 TARDBP TAR DNA-binding protein 43 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 67.638 59.692 3 0.032957 1 48632 20150910_Q1_SA_NiHu_Masterprac_group13_C 61.11 61.11 2445100 0 0 670630 475660 268000 1030800 5156 1073 5098 22788;22789;22790;22791 15102 15102 0 MDGGDDGNLIIKK Acetyl (Protein N-term) 1416.6919 0.69187967 493 H3BPH9;H3BPF9;H3BN22;Q6P4H7;F5GY57;H3BSF0;H3BQQ6;H3BTI2;H3BTP8;H3BSY6;H3BP64;H3BUL4;H3BMX9;Q9GZU8 FAM192A;NIP30 Protein FAM192A yes no 1 0 1 By matching By matching By matching By matching By matching By MS/MS 1 124.91 120.15 2 0.0045188 1 81547 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.708 42.293 0 0 0 0 0 0 0 5157 493 5099 22792 15103 15103 1 MDGIVPDIAVGTK Acetyl (Protein N-term) 1356.6959 0.69590241 882 P26599;P26599-2;P26599-3;A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 yes no 1 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 134.65 132.16 2 0.0042875 2 89435 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.414 37.099 36903000 0 0 0 5561100 0 31341000 5158 882 5100 22793;22794 15104;15105 15105 2 MDHTEGSPAEEPPAHAPSPGK Acetyl (Protein N-term) 2182.9589 0.95894641 1042 Q06330;D6R946 RBPJ Recombining binding protein suppressor of hairless yes no 1 0 0 By MS/MS By matching By matching By matching By matching By matching 1 96.007 86.534 3 0.002152 1 59198 20150910_Q1_SA_NiHu_Masterprac_group10_C 40.689 33.418 824100 824100 0 0 0 0 0 5159 1042 5101 22795 15106 15106 1 MDIETNDTFSDEAVPESSK Unmodified 2113.8998 0.89975977 736 O60934 NBN Nibrin yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 131.94 123.79 2 0.0079405 3 84083 20150910_Q1_SA_NiHu_Masterprac_group10_B 42.908 33.624 18403000 10180000 8223700 0 0 0 0 5160 736 5102 22796;22797;22798 15107;15108;15109 15108 3 MDLAPSKDMGPPKENK Unmodified 1756.8488 0.84879102 388 E7EVA0;P27816-6;P27816;P27816-2 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching 1 2 2 2 94.722 83.858 3;4 0.0016335 4 62378 20150910_Q1_SA_NiHu_Masterprac_group15_C 72.428 72.428 14437000 1458000 0 917110 3850300 8211700 0 5161 388 5103 22799;22800;22801;22802;22803;22804;22805 15110;15111;15112;15113 15113 4 MDLNSEQAEQLER Unmodified 1561.7042 0.70423527 46 Q52LJ0;A8MUW5 FAM98B Protein FAM98B yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 115.42 106.27 2 0.0017786 2 72756 20150910_Q1_SA_NiHu_Masterprac_group15_B 85.837 69.268 11772000 2403000 1500100 1264400 557790 2800900 3246200 5162 46 5104 22806;22807;22808;22809;22810;22811 15114;15115 15114 2 MDLSGVKK Acetyl (Protein N-term) 918.48445 0.48445308 631 H3BV80;H3BMM9;H3BTC0;Q15287;H3BRK4;H3BTV0;H3BNI3;H3BP82;H3BTR6;H3BUG0;H3BTY0;H3BNU7;H3BUL0 RNPS1 RNA-binding protein with serine-rich domain 1 yes no 1 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 97.349 89.099 2 0.016864 6 61116 20150910_Q1_SA_NiHu_Masterprac_group10_C 89.698 20.522 22214000 5515200 3117100 2404700 2051700 4659700 4465400 5163 631 5105 22812;22813;22814;22815;22816;22817;22818 15116;15117;15118;15119;15120;15121 15121 6 MDPAASSCMR Acetyl (Protein N-term) 1166.4518 0.45184909 948 P50221;P50221-2 MEOX1 Homeobox protein MOX-1 yes no 1 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 107.3 96.977 2 0.0016367 1 66079 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.469 81.365 9418400 0 0 2426000 0 0 6992500 5164 948 5106 22819;22820 15122 15122 1 MDQAIIFCR Unmodified 1152.542 0.54198473 1348 Q92499;B4DME8;B4DPN6 DDX1 ATP-dependent RNA helicase DDX1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 132.22 127.26 2 2.5478E-30 1 87179 20150910_Q1_SA_NiHu_Masterprac_group15_B 136.57 80.553 9063800 0 0 0 0 0 9063800 5165 1348 5107 22821 15123 15123 1 MDRSKENCISGPVK Acetyl (Protein N-term) 1661.7865 0.78652511 698 O14965;A3KFJ0;Q5QPD4;A3KFJ1;Q5QPD2;Q5QPD1;A3KFJ2 AURKA Aurora kinase A yes no 1 0 2 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 83.323 78.133 3 0.0011501 3 60574 20150910_Q1_SA_NiHu_Masterprac_group13_C 76.311 48.577 16808000 0 4889300 4924900 1223500 0 5769700 5166 698 5108 22822;22823;22824;22825 15124;15125;15126 15125 3 MDSCIEAFGTTK Unmodified 1358.5846 0.58463741 1475 Q9GZS1-2;Q9GZS1;E7EX70 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 122.95 111.89 2 0.0038962 1 76578 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.118 30.59 2788100 0 0 0 0 445570 2342600 5167 1475 5109 22826;22827 15127 15127 1 MDSCIEAFGTTKQK Unmodified 1614.7382 0.73817793 1475 Q9GZS1-2;Q9GZS1;E7EX70 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 2 2 1 103.55 94.815 2;3 1.9049E-69 7 64841 20150910_Q1_SA_NiHu_Masterprac_group15_B 131.79 119.88 30146000 5877900 3258000 3761000 4076000 6670600 6502400 5168 1475 5110 22828;22829;22830;22831;22832;22833;22834;22835;22836 15128;15129;15130;15131;15132;15133;15134 15131 7 MDSFDEDLARPSGLLAQERK Unmodified 2277.1059 0.10594499 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 132.76 123.84 3;4 0.00038337 2 81810 20150910_Q1_SA_NiHu_Masterprac_group15_C 68.261 51.882 20029000 0 0 0 16421000 3607500 0 5169 1639 5111 22837;22838 15135;15136 15136 2 MDSTANEVEAVK Unmodified 1292.5918 0.59183127 356 I3L2P8;F5H8J2;H7BZ94;E7EPA8;P07237;H0Y3Z3;B4DUA5;I3L0S0 P4HB Protein disulfide-isomerase yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 80.53 73.151 2 0.00092463 3 50716 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.856 71.076 3090000 0 633760 553440 347010 562110 993720 5170 356 5112 22839;22840;22841;22842;22843 15137;15138;15139 15137 3 MDSTANEVEAVKVHSFPTLK Oxidation (M) 2218.094 0.093983325 356 I3L2P8;F5H8J2;H7BZ94;E7EPA8;P07237;H0Y3Z3;B4DUA5;I3L0S0 P4HB Protein disulfide-isomerase yes no 0 1 1 By matching By MS/MS By matching By matching By matching By matching 1 131.48 130.88 4 0.00094753 1 84342 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.615 42.9 7960800 0 7960800 0 0 0 0 5171 356 5113 22844 15140 15140 39 1 MDSTANEVEAVKVHSFPTLK Unmodified 2202.0991 0.099068703 356 I3L2P8;F5H8J2;H7BZ94;E7EPA8;P07237;H0Y3Z3;B4DUA5;I3L0S0 P4HB Protein disulfide-isomerase yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 132.84 117.15 3 1.0079E-66 2 78563 20150910_Q1_SA_NiHu_Masterprac_group10_C 124.63 89.704 16333000 16333000 0 0 0 0 0 5172 356 5113 22845 15141;15142 15141 2 MDSTEPPYSQK Unmodified 1281.5547 0.55471749 1006 Q5VTE0;P68104;F8W6I0 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 64.708 57.698 2 0.0027179 4 40574 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.114 72.606 64586000 8157900 3957300 6154300 10825000 24523000 10968000 5173 1006 5114 22846;22847;22848;22849;22850;22851 15143;15144;15145;15146 15145 4 MDSTEPPYSQK Oxidation (M) 1297.5496 0.54963211 1006 Q5VTE0;P68104;F8W6I0 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 1 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 51.307 46.118 2 0.024063 1 32416 20150910_Q1_SA_NiHu_Masterprac_group13_B 62.088 47.271 2123300 422770 0 0 323360 939130 438090 5174 1006 5114 22852;22853;22854;22855 15147 15147 120 0 MDVANLAK Unmodified 860.44259 0.44258826 1479 Q9H0H5;H0YIK5;F8VZ41 RACGAP1 Rac GTPase-activating protein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 95.422 89.216 2 0.014947 4 67127 20150910_Q1_SA_NiHu_Masterprac_group13_C 86.833 22.03 21064000 2362600 3810200 4362600 2635900 0 7893100 5175 1479 5115 22856;22857;22858;22859;22860 15148;15149;15150;15151 15148 4 MEADPDGQQPEK Unmodified 1343.5663 0.5663448 1365 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 48.833 43.126 2 0.0018023 5 34901 20150910_Q1_SA_NiHu_Masterprac_group13_C 79.744 40.962 3342200 434730 381150 764790 266740 493720 1001100 5176 1365 5116 22861;22862;22863;22864;22865;22866 15152;15153;15154;15155;15156 15153 5 MEADPDGQQPEKAENK Unmodified 1785.7839 0.78394215 1365 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 47.816 42.321 3 0.0031603 1 30208 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.393 40.808 6635000 0 1493700 1296500 746170 972720 2125800 5177 1365 5117 22867;22868;22869;22870;22871 15157 15157 1 MEAFQELRKPSAR Acetyl (Protein N-term) 1603.8141 0.81406049 1399 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 1 0 2 By matching By MS/MS By matching By matching By matching By matching 1 132.78 132.18 3 0.022782 1 85728 20150910_Q1_SA_NiHu_Masterprac_group10_B 47.429 13.888 14918000 0 14918000 0 0 0 0 5178 1399 5118 22872 15158 15158 1 MEATSREAAPAK Acetyl (Protein N-term) 1302.6238 0.6238001 424 E9PE58;Q15345-3;Q15345 LRRC41 Leucine-rich repeat-containing protein 41 yes yes 1 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 67.228 62.24 2 0.0017386 1 50161 20150910_Q1_SA_NiHu_Masterprac_group13_C 91.307 59.71 2930100 0 625040 1232600 553920 0 518570 5179 424 5119 22873;22874;22875;22876 15159 15159 1 MEAYVPSEEEK Unmodified 1310.57 0.5700332 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 1 1 1 1 1 90.579 82.867 2 0.0049151 4 56605 20150910_Q1_SA_NiHu_Masterprac_group10_B 74.611 64.422 8633400 161420 1716800 1636500 964620 1355000 2799000 5180 1325 5120 22877;22878;22879;22880;22881;22882;22883 15160;15161;15162;15163 15162 4 MEDCLHTSSENLSK Acetyl (Protein N-term) 1691.7131 0.7130854 209 Q8N8K9;Q8N8K9-2;B7ZKW6 KIAA1958 Uncharacterized protein KIAA1958 yes no 1 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 117.74 107.99 2 0.0031886 4 77992 20150910_Q1_SA_NiHu_Masterprac_group13_C 54.812 44.459 4323800 0 0 1515700 475900 658330 1673900 5181 209 5121 22884;22885;22886;22887;22888 15164;15165;15166;15167 15164 4 MEDSASASLSSAAATGTSTSTPAAPTARKQLDK Acetyl (Protein N-term) 3250.5623 0.56232864 753 O76021;I3L3U9;I3L2F2;I3L4T8;I3L1Y4 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 1 0 2 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 130.98 122.83 3 1.1845E-40 2 77224 20150910_Q1_SA_NiHu_Masterprac_group10_C 85.185 70.703 10346000 6453600 3892100 0 0 0 0 5182 753 5122 22889;22890 15168;15169 15169 2 MEDSQDLNEQSVK Acetyl (Protein N-term) 1563.6723 0.67226644 373 O95677-3;E7ESD5;O95677-5;O95677-2;E9PLN6;O95677-4;O95677;F2Z2Y1 EYA4 Eyes absent homolog 4 yes no 1 0 0 By matching By matching By MS/MS By matching By matching By matching 1 118.73 100.84 2 0.013167 1 73846 20150910_Q1_SA_NiHu_Masterprac_group13_C 46.282 28.267 909510 0 0 909510 0 0 0 5183 373 5123 22891 15170 15170 1 MEDSQDLNEQSVKK Acetyl (Protein N-term) 1691.7672 0.76722946 373 O95677-3;E7ESD5;O95677-5;O95677-2;E9PLN6;O95677-4;O95677;F2Z2Y1 EYA4 Eyes absent homolog 4 yes no 1 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 93.537 85.997 2 0.0028595 3 63622 20150910_Q1_SA_NiHu_Masterprac_group15_C 68.168 31.23 8471300 0 1243100 2856100 896260 813530 2662300 5184 373 5124 22892;22893;22894;22895;22896;22897 15171;15172;15173 15173 3 MEEDPDDVPHGHITSLAVK Unmodified 2088.9786 0.97861922 29 A6NM98;P41227;F8W808;A8MWP7;Q6P4J0 NAA10;ARD1A N-alpha-acetyltransferase 10 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 121.2 111.29 4 0.02747 2 73040 20150910_Q1_SA_NiHu_Masterprac_group10_B 34.262 21.463 11664000 0 1016400 10648000 0 0 0 5185 29 5125 22898;22899 15174;15175 15175 2 MEEDQELER Acetyl (Protein N-term) 1219.5027 0.50268192 1637 Q9Y2S0-2;Q9Y2S0 POLR1D DNA-directed RNA polymerases I and III subunit RPAC2 yes no 1 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 106.23 98.984 2 0.0063956 1 65686 20150910_Q1_SA_NiHu_Masterprac_group10_B 81.771 72.703 3787500 1203000 2584500 0 0 0 0 5186 1637 5126 22900;22901 15176 15176 1 MEEDQELERK Acetyl (Protein N-term) 1347.5976 0.59764493 1637 Q9Y2S0-2;Q9Y2S0 POLR1D DNA-directed RNA polymerases I and III subunit RPAC2 yes no 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 92.057 83.112 2 3.8305E-77 6 56787 20150910_Q1_SA_NiHu_Masterprac_group10_B 151.79 102.51 107130000 5632100 18552000 16351000 4420300 16601000 45569000 5187 1637 5127 22902;22903;22904;22905;22906;22907;22908 15177;15178;15179;15180;15181;15182 15181 6 MEEDQELERK Acetyl (Protein N-term);Oxidation (M) 1363.5926 0.59255956 1637 Q9Y2S0-2;Q9Y2S0 POLR1D DNA-directed RNA polymerases I and III subunit RPAC2 yes no 1 1 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 67.538 58.89 2 0.0032458 2 41255 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.081 70.318 4176300 0 1302600 691070 0 313100 1869600 5188 1637 5127 22909;22910;22911;22912 15183;15184 15183 183 2 MEEEGTEDNGLEDDSR Unmodified 1824.6956 0.69558066 1097 Q14151;A8MXT5;B4DU53 SAFB2 Scaffold attachment factor B2 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 74.93 66.207 2 0.0036704 1 53110 20150910_Q1_SA_NiHu_Masterprac_group13_C 65.467 56.431 1355700 0 0 346780 0 0 1008900 5189 1097 5128 22913;22914 15185 15185 1 MEEEQHHWDDRR Unmodified 1666.6907 0.69065089 1403 Q96KR1;B5MEH6 ZFR Zinc finger RNA-binding protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 44.839 38.948 3 0.0019946 1 27592 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.385 55.802 6407200 0 0 812720 612830 1439800 3541800 5190 1403 5129 22915;22916;22917;22918 15186 15186 1 MEEESQSQGRDLTLEENQVK Unmodified 2349.0754 0.075432727 1110 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 101 93.848 3 0.00065355 3 64200 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.173 45.04 4156700 0 1042800 1189000 0 0 1924800 5191 1110 5130 22919;22920;22921 15187;15188;15189 15188 3 MEEESQSQGRDLTLEENQVKK Unmodified 2477.1704 0.17039574 1110 Q14683 SMC1A Structural maintenance of chromosomes protein 1A yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 92.483 83.209 4 0.0070908 2 63457 20150910_Q1_SA_NiHu_Masterprac_group13_C 41.988 31.64 4790000 1579700 0 893690 0 0 2316600 5192 1110 5131 22922;22923;22924 15190;15191 15190 2 MEELGLASQPPEGRPCQPQTR Unmodified 2380.1264 0.12636286 39 Q7Z5J4-3;E7EVZ3;Q7Z5J4;A8MTC3;Q7Z5J4-2;C9JWB0 RAI1 Retinoic acid-induced protein 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 118.47 109.19 3 0.016018 1 77172 20150910_Q1_SA_NiHu_Masterprac_group15_C 38.057 29.298 1293000 0 347480 0 0 945500 0 5193 39 5132 22925;22926 15192 15192 1 MEELHNQEMQK Unmodified 1415.6173 0.61733452 865 P23246;P23246-2;H0Y9K7 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 56.903 50.666 3 0.0069681 1 41552 20150910_Q1_SA_NiHu_Masterprac_group15_C 67.214 44.886 6649900 0 487160 634800 592840 2049300 2885800 5194 865 5133 22927;22928;22929;22930;22931 15193 15193 1 MEELHNQEVQK Unmodified 1383.6453 0.64526383 1133 Q15233;F5GYZ3;C9JYS8;H7C367 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 2 1 2 2 52.215 47.132 2;3 1.0934E-08 4 38937 20150910_Q1_SA_NiHu_Masterprac_group15_C 112.5 76.834 18205000 1126000 1784900 0 922700 8056500 6315100 5195 1133 5134 22932;22933;22934;22935;22936;22937;22938;22939 15194;15195;15196;15197 15196 4 MEELLRR Acetyl (Protein N-term) 987.51715 0.51715019 1511 Q9HA64;I3L1I7;I3L139;I3L407 FN3KRP Ketosamine-3-kinase yes no 1 0 1 By matching By matching By matching By matching By matching By MS/MS 1 133.89 128.93 2 0.010444 1 89077 20150910_Q1_SA_NiHu_Masterprac_group15_B 100.19 20.714 0 0 0 0 0 0 0 5196 1511 5135 22940 15198 15198 1 MEEPQAGDAAR Acetyl (Protein N-term) 1215.519 0.51900068 706 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes yes 1 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 1 1 1 1 1 85.683 77.934 2 0.0011226 4 58478 20150910_Q1_SA_NiHu_Masterprac_group15_C 88.803 76.87 16642000 4263500 2021400 1508100 1331700 3860600 3657000 5197 706 5136 22941;22942;22943;22944;22945;22946;22947 15199;15200;15201;15202 15200 4 MEEQGLADASLLKK Unmodified 1531.7916 0.79159371 61 B1AHE3;Q9UBB4-2;Q9UBB4 ATXN10 Ataxin-10 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 118.86 116.12 3 0.0013185 1 79040 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.29 37.963 1947400 0 1079200 0 0 0 868190 5198 61 5137 22948;22949 15203 15203 1 MEESAEYEAAR Unmodified 1284.5292 0.52923102 1259 Q86TJ2-3;Q86TJ2-2;Q86TJ2 TADA2B Transcriptional adapter 2-beta yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 66.979 58.831 2 0.0049151 2 46954 20150910_Q1_SA_NiHu_Masterprac_group15_C 74.611 57.38 1302500 0 0 0 0 509520 793000 5199 1259 5138 22950;22951 15204;15205 15205 2 MEESEPERK Acetyl (Protein N-term) 1175.5129 0.51285267 328 D6RGI7;Q9UJV9;D6RD33 DDX41 Probable ATP-dependent RNA helicase DDX41 yes no 1 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 52.839 46.943 2 0.015922 2 33908 20150910_Q1_SA_NiHu_Masterprac_group10_B 80.706 53.402 4632600 0 693560 1064000 389940 741330 1743800 5200 328 5139 22952;22953;22954;22955;22956 15206;15207 15207 2 MEETPTEYLQR Unmodified 1395.634 0.63403044 1321 Q8NE71;Q8NE71-2;H0YGW7 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 2 119.4 111.51 2 0.0019685 4 75989 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.313 51.733 11191000 1965200 1827900 0 1404400 661450 5331800 5201 1321 5140 22957;22958;22959;22960;22961;22962 15208;15209;15210;15211 15208 4 MEETQNVQLNK Unmodified 1332.6344 0.63436479 1508 Q9H9H4 VPS37B Vacuolar protein sorting-associated protein 37B yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 75.656 67.471 2 0.03822 1 48282 20150910_Q1_SA_NiHu_Masterprac_group10_C 73.951 31.741 1144800 1144800 0 0 0 0 0 5202 1508 5141 22963 15212 15212 0 MEGHDPKEPEQLRK Acetyl (Protein N-term);Oxidation (M) 1750.8308 0.83083277 371 E7EWI9;E7ERJ4;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes no 1 1 2 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 56.781 50.369 4 0.0092705 2 35264 20150910_Q1_SA_NiHu_Masterprac_group13_B 51.463 34.884 9973000 405190 1845300 2022200 860430 2696700 2143100 5203 371 5142 22964;22965;22966;22967;22968;22969 15213;15214 15213 42 2 MEGHDPKEPEQLRK Acetyl (Protein N-term) 1734.8359 0.83591814 371 E7EWI9;E7ERJ4;P51991-2 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes no 1 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 76.542 69.001 3;4 5.7527E-42 10 47892 20150910_Q1_SA_NiHu_Masterprac_group15_B 122.52 97.646 126250000 11449000 0 29387000 22696000 17110000 45611000 5204 371 5142 22970;22971;22972;22973;22974;22975;22976;22977;22978 15215;15216;15217;15218;15219;15220;15221;15222;15223;15224 15221 10 MEGLLNGSSDPHQSR Unmodified 1626.742 0.74201776 701 O15014 ZNF609 Zinc finger protein 609 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 88.183 78.908 3 0.0022493 5 60981 20150910_Q1_SA_NiHu_Masterprac_group13_C 64.104 36.422 4998900 0 691560 828600 0 1174800 2303900 5205 701 5143 22979;22980;22981;22982 15225;15226;15227;15228;15229 15225 5 MEGPQGACGLK Unmodified 1146.5162 0.51616391 1182 Q5H9F3-3;Q5H9F3-2;Q5H9F3;H7C4B2 BCORL1 BCL-6 corepressor-like protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 68.252 67.675 2 0.029756 1 47175 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.721 35.58 2488700 0 0 0 374940 0 2113800 5206 1182 5144 22983;22984 15230 15230 0 MEIDESNAGSSK Unmodified 1266.5398 0.5397957 1604 Q9UKY1;H0YB50 ZHX1 Zinc fingers and homeoboxes protein 1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 56.627 50.878 2 0.037346 1 41370 20150910_Q1_SA_NiHu_Masterprac_group13_C 45.28 30.118 1646800 0 455940 484550 0 0 706360 5207 1604 5145 22985;22986;22987 15231 15231 1 MEIDESNAGSSKEEAGETSPADESGAPK Unmodified 2822.2036 0.20360595 1604 Q9UKY1;H0YB50 ZHX1 Zinc fingers and homeoboxes protein 1 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 94.628 83.926 3 0.00021136 4 56824 20150910_Q1_SA_NiHu_Masterprac_group13_B 45.323 39.858 6606700 2008200 0 1643900 1477600 1477000 0 5208 1604 5146 22988;22989;22990;22991 15232;15233;15234;15235 15233 4 MEIKSTIQK Oxidation (M) 1092.5849 0.5848954 349 E7ENC6;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8 TTN Titin yes no 0 1 1 By matching By matching By matching By matching By matching By MS/MS 1 114.15 110.08 2 0.026701 1 75302 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.732 20.451 0 0 0 0 0 0 0 5209 349 5147 22992 15236 15236 33 1 MEIYRPHK Unmodified 1072.5488 0.54878467 1086;1358 Q92769;H3BM24;B3KRS5;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9;E5RK19;Q13547;Q5TEE2 HDAC2;HDAC1 Histone deacetylase 2;Histone deacetylase;Histone deacetylase 1 no no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 60.793 52.796 2 0.011255 2 43370 20150910_Q1_SA_NiHu_Masterprac_group13_C 109.01 57.225 13887000 0 1608700 3793100 0 1075500 7409600 5210 1358;1086 5148 22993;22994;22995;22996 15237;15238 15237 2 MEIYRPHKANAEEMTK Unmodified 1946.9343 0.93425198 1086 Q13547;Q5TEE2 HDAC1 Histone deacetylase 1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 78.684 71.324 3 7.7129E-05 3 49076 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.768 64.401 8533300 0 999720 1885100 249080 515190 4884200 5211 1086 5149 22997;22998;22999;23000;23001 15239;15240;15241 15241 3 MEIYRPHKATAEEMTK Unmodified 1933.939 0.93900301 1358 Q92769;H3BM24;B3KRS5;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9;E5RK19 HDAC2 Histone deacetylase 2;Histone deacetylase yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 74.649 74.022 3 0.00011184 1 51185 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.561 72.379 3319000 0 0 0 406850 0 2912100 5212 1358 5150 23002;23003 15242 15242 1 MEKAPIDTSDVEEK Unmodified 1590.7447 0.7447031 330 Q06265-3;Q06265-4;D6RIY6;Q06265;Q06265-2 EXOSC9 Exosome complex component RRP45 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 2 90.076 82.7 2;3 9.4787E-104 7 56334 20150910_Q1_SA_NiHu_Masterprac_group10_B 144.18 118.45 26241000 1991100 5811300 4078500 1896700 2970200 9493400 5213 330 5151 23004;23005;23006;23007;23008;23009;23010;23011;23012 15243;15244;15245;15246;15247;15248;15249 15248 7 MELEQANER Unmodified 1118.5026 0.50262234 1628 Q9Y232-2;Q9Y232;Q9Y232-3;Q9Y232-4 CDYL Chromodomain Y-like protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 59.922 58.768 2 0.014686 1 41413 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.533 50.384 654680 0 0 0 0 0 654680 5214 1628 5152 23013 15250 15250 1 MELITILEK Acetyl (Protein N-term) 1130.6257 0.62569758 1119 Q14974 KPNB1 Importin subunit beta-1 yes yes 1 0 0 By matching By matching By matching By matching By matching By MS/MS 1 134.75 129.79 2 0.025563 1 90086 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.347 46.128 27885000 0 0 0 0 0 27885000 5215 1119 5153 23014 15251 15251 1 MENFQKVEK Acetyl (Protein N-term) 1193.5751 0.575059 589 P24941-2;P24941;G3V5T9;E7ESI2;G3V317 CDK2 Cyclin-dependent kinase 2 yes no 1 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 115.75 104.89 2 0.038082 1 76271 20150910_Q1_SA_NiHu_Masterprac_group13_C 64.374 36.197 2576700 817930 0 828280 930520 0 0 5216 589 5154 23015;23016;23017 15252 15252 1 MENLPEINTAK Unmodified 1258.6227 0.62273747 42 A8MTM6;Q15398;Q15398-1 DLGAP5 Disks large-associated protein 5 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 116.33 108.86 2 0.010566 2 76762 20150910_Q1_SA_NiHu_Masterprac_group15_C 64.224 29.724 9465200 0 2665200 0 0 2418000 4382000 5217 42 5155 23018;23019;23020 15253;15254 15254 2 MENSQLCK Acetyl (Protein N-term) 1050.4474 0.44741564 1074 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 1 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 85.699 77.147 2 0.013728 2 52972 20150910_Q1_SA_NiHu_Masterprac_group13_B 74.301 33.523 11120000 2363100 0 622230 2376800 4243400 1514000 5218 1074 5156 23021;23022;23023;23024;23025 15255;15256 15255 2 MEPENKYLPELMAEK Oxidation (M) 1836.8638 0.86377238 1045 Q07666;Q07666-3;Q07666-2;E7ET98 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 2 132.09 123.28 3 1.9004E-29 7 85454 20150910_Q1_SA_NiHu_Masterprac_group13_B 116.87 93.892 145300000 30157000 37485000 36087000 35544000 6026400 0 5219 1045 5157 23026;23027;23028;23029;23030;23031;23032;23033 15257;15258;15259;15260;15261;15262;15263 15257 125;126 6 MEPENKYLPELMAEK Unmodified 1820.8689 0.86885776 1045 Q07666;Q07666-3;Q07666-2;E7ET98 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 2 1 133.16 125.62 2;3 4.165E-30 7 86193 20150910_Q1_SA_NiHu_Masterprac_group13_B 116 81.897 378450000 104350000 110090000 49718000 98093000 16197000 0 5220 1045 5157 23034;23035;23036;23037;23038;23039;23040 15264;15265;15266;15267;15268;15269;15270 15265 7 MEPENKYLPELMAEK 2 Oxidation (M) 1852.8587 0.858687 1045 Q07666;Q07666-3;Q07666-2;E7ET98 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 2 1 By MS/MS By matching By matching By matching By matching By matching 1 131.19 115.5 3 0.0031732 1 76785 20150910_Q1_SA_NiHu_Masterprac_group10_C 55.755 41.354 4105400 4105400 0 0 0 0 0 5221 1045 5157 23041 15271 15271 125;126 1 MEQQEMAQQER Unmodified 1406.5918 0.59184805 1384 Q96EU6-2;Q96EU6 RRP36 Ribosomal RNA processing protein 36 homolog yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 46.091 45.137 2 0.024861 1 32402 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.034 43.522 419630 0 0 0 0 0 419630 5222 1384 5158 23042 15272 15272 1 MEQQQLEEQK Unmodified 1289.5922 0.59216562 1540 Q9NRZ9-6;Q9NRZ9-5;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9;Q9NRZ9-8;Q9NRZ9-7;B1ALG6;Q9NRZ9-9 HELLS Lymphoid-specific helicase yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 53.092 47.238 2 0.0076039 2 33675 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.198 46.481 1380300 147660 270310 474020 0 0 488280 5223 1540 5159 23043;23044;23045;23046 15273;15274 15274 2 MEQQQLEEQKK Unmodified 1417.6871 0.68712864 1540 Q9NRZ9-6;Q9NRZ9-5;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9;Q9NRZ9-8;Q9NRZ9-7;B1ALG6;Q9NRZ9-9 HELLS Lymphoid-specific helicase yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 38.682 36.373 3 0.010738 1 25594 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.314 34.255 535670 0 535670 0 0 0 0 5224 1540 5160 23047 15275 15275 1 MERAESSSTEPAK Acetyl (Protein N-term) 1463.6562 0.65622244 966 P54278;P54278-3;P54278-4;P54278-2 PMS2 Mismatch repair endonuclease PMS2 yes no 1 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 59.015 57.626 2 0.019839 1 40742 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.135 27.666 1046800 0 171610 0 271040 0 604180 5225 966 5161 23048;23049;23050 15276 15276 1 MERFVVTAPPARNR Acetyl (Protein N-term) 1684.8831 0.88314311 1588 Q9UFW8;C9JUJ0 CGGBP1 CGG triplet repeat-binding protein 1 yes no 1 0 2 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 131.55 131.24 3 1.0238E-41 2 84596 20150910_Q1_SA_NiHu_Masterprac_group13_B 120.6 86.635 14501000 0 7938700 0 6562500 0 0 5226 1588 5162 23051;23052 15277;15278 15277 2 MESPASSQPASMPQSKGK Acetyl (Protein N-term) 1888.8659 0.86589764 925 P46734 MAP2K3 Dual specificity mitogen-activated protein kinase kinase 3 yes yes 1 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 93.474 87.09 2 0.011645 1 59039 20150910_Q1_SA_NiHu_Masterprac_group13_B 42.58 22.226 3795100 0 0 1581300 1258900 0 954930 5227 925 5163 23053;23054;23055 15279 15279 1 METEADAPSPAPSLGER Unmodified 1756.7938 0.79377856 430 Q12873;E9PG89;Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 108.69 101.17 2 0.0017505 2 73813 20150910_Q1_SA_NiHu_Masterprac_group13_C 75.143 60.743 17528000 0 4668100 4067900 0 0 8792300 5228 430 5164 23056;23057;23058 15280;15281 15280 2 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFK Acetyl (Protein N-term);Oxidation (M) 4032.7153 0.71533641 984 P61978-3;P61978-2;B4DFF1;P61978;Q5T6W5;Q5T6W2 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 1 1 2 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 132.66 126.77 3 1.7827E-24 4 87874 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.538 58.317 216460000 0 16290000 35257000 19124000 0 145790000 5229 984 5165 23059;23060;23061;23062 15282;15283;15284;15285 15284 115 4 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFK Acetyl (Protein N-term) 4016.7204 0.72042178 984 P61978-3;P61978-2;B4DFF1;P61978;Q5T6W5;Q5T6W2 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 1 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 133.36 125.51 3 6.5994E-37 6 88592 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.212 71.642 540380000 79244000 70499000 197530000 72370000 0 120740000 5230 984 5165 23063;23064;23065;23066;23067 15286;15287;15288;15289;15290;15291 15288 6 METSALKQQEQPAATKIR Acetyl (Protein N-term) 2071.0732 0.073188303 909 P40937 RFC5 Replication factor C subunit 5 yes yes 1 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 2 1 119.35 107.1 3 0.0015934 3 71955 20150910_Q1_SA_NiHu_Masterprac_group10_C 59.252 34.066 15506000 2270600 0 2440300 0 0 10795000 5231 909 5166 23068;23069;23070;23071 15292;15293;15294 15294 3 MEVDQPEPADTQPEDISESKVEDCK Unmodified 2875.2375 0.23754861 1053 Q09472 EP300 Histone acetyltransferase p300 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 129.58 113.89 3 0.0042864 1 75246 20150910_Q1_SA_NiHu_Masterprac_group10_C 40.086 35.492 1931100 1931100 0 0 0 0 0 5232 1053 5167 23072 15295 15295 1 MEVEAAEAR Acetyl (Protein N-term) 1046.4703 0.47025958 1401 Q96K58;C9JHH8;C9JG35;C9JCJ0;C9J092 ZNF668 Zinc finger protein 668 yes no 1 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 106.72 102.18 2 0.0078059 2 67907 20150910_Q1_SA_NiHu_Masterprac_group10_B 76.943 62.708 4457000 861200 730610 0 1332900 0 1532300 5233 1401 5168 23073;23074;23075;23076 15296;15297 15297 2 MEVISLQNEK Unmodified 1189.6013 0.60127375 1362 Q92878-2;Q92878;Q92878-3;E7ESD9 RAD50 DNA repair protein RAD50 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 119.17 109.76 2 0.0087186 4 72020 20150910_Q1_SA_NiHu_Masterprac_group10_B 79.659 24.345 25682000 2304900 3975600 2558700 2697000 4346100 9799600 5234 1362 5169 23077;23078;23079;23080;23081;23082 15298;15299;15300;15301 15301 4 MFQVPDSEGGRAGSR Acetyl (Protein N-term) 1634.7471 0.74710314 98 Q9H910;B4DLH4;H3BMV3;B4DL85;H3BMM8;H3BS08;B4E1P3 HN1L Hematological and neurological expressed 1-like protein yes no 1 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 131.58 131.28 2 0.010946 1 84362 20150910_Q1_SA_NiHu_Masterprac_group10_B 53.946 35.61 15179000 0 9889400 0 5289700 0 0 5235 98 5170 23083;23084 15302 15302 0 MFRAVEEGLTYK Unmodified 1442.7228 0.72278587 414 Q5JTH9-2;E9PCK7;Q5JTH9;F5H456 RRP12 RRP12-like protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 127.76 125.28 3 0.00047541 1 84785 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.402 69.164 5204400 0 0 0 295180 0 4909200 5236 414 5171 23085;23086 15303 15303 1 MGAHYHCIICSATITR Unmodified 1889.8699 0.86987759 1248 Q7Z2T5;Q7Z2T5-2 TRMT1L TRMT1-like protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 114.7 104.34 3 0.0016831 1 71268 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.283 52.439 3384900 0 0 0 0 466100 2918900 5237 1248 5172 23087;23088 15304 15304 1 MGAHYHCIICSATITRR Unmodified 2045.971 0.97098861 1248 Q7Z2T5;Q7Z2T5-2 TRMT1L TRMT1-like protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 104.58 95.255 4 0.00084625 1 65005 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.649 61.494 5737400 0 0 715790 229150 1317500 3474900 5238 1248 5173 23089;23090;23091;23092 15305 15305 1 MGAYHTIELEPNRQFTLAK Oxidation (M) 2234.1154 0.11538747 1443 Q9BRX2 PELO Protein pelota homolog yes yes 0 1 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 131.75 129.27 4 0.018718 2 84531 20150910_Q1_SA_NiHu_Masterprac_group13_B 52.172 30.4 45748000 0 0 0 10684000 0 35065000 5239 1443 5174 23093;23094 15306;15307 15306 169 2 MGAYHTIELEPNRQFTLAK Unmodified 2218.1205 0.12047285 1443 Q9BRX2 PELO Protein pelota homolog yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 132.53 123.03 4 0.00026504 5 78662 20150910_Q1_SA_NiHu_Masterprac_group10_C 81.01 53.496 202590000 26413000 11631000 59045000 21684000 13922000 69890000 5240 1443 5174 23095;23096;23097;23098;23099;23100 15308;15309;15310;15311;15312 15312 5 MGDAQPEMFDK Unmodified 1267.5213 0.52130887 1495 Q9H649 NSUN3 Putative methyltransferase NSUN3 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 101.33 95.795 2 6.1909E-05 2 65425 20150910_Q1_SA_NiHu_Masterprac_group15_B 100.93 90.743 3773400 0 818480 914360 333140 0 1707400 5241 1495 5175 23101;23102;23103;23104 15313;15314 15314 2 MGEASDLPRTDGLQEK Unmodified 1745.8254 0.82541304 1236 Q6UB99 ANKRD11 Ankyrin repeat domain-containing protein 11 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 103.97 94.217 3 0.026453 1 64397 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.629 19.957 4339500 0 1018100 1183300 0 583550 1554500 5242 1236 5176 23105;23106;23107;23108 15315 15315 1 MGFTEVTPVTGASLRR Unmodified 1720.893 0.89303909 352 P55265;P55265-4;E7ENU4;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1 132.65 123.22 2;3 1.3429E-50 7 78709 20150910_Q1_SA_NiHu_Masterprac_group10_C 119.39 87.505 613990000 114430000 88473000 73308000 40815000 29901000 267060000 5243 352 5177 23109;23110;23111;23112;23113;23114;23115;23116 15316;15317;15318;15319;15320;15321;15322 15322 7 MGFTEVTPVTGASLRR Oxidation (M) 1736.888 0.88795372 352 P55265;P55265-4;E7ENU4;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 1 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 129.45 118.05 3 5.0114E-05 5 81784 20150910_Q1_SA_NiHu_Masterprac_group13_C 71.933 56.176 56648000 8497600 3102500 15066000 0 20735000 9247100 5244 352 5177 23117;23118;23119;23120;23121 15323;15324;15325;15326;15327 15323 34 4 MGGGSIEVSVPR Unmodified 1187.5969 0.59685707 1394 Q96I24;A6NJ37;Q96I24-2 FUBP3 Far upstream element-binding protein 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 121.06 113.97 2 0.0031193 1 77559 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.806 33.056 9745400 2969200 1588800 0 0 0 5187500 5245 1394 5178 23122;23123;23124 15328 15328 1 MGHTVTVWNR Unmodified 1199.587 0.58696109 1168;1169 Q49A26-2;Q49A26;Q49A26-3;Q49A26-4;Q49A26-5 GLYR1 Putative oxidoreductase GLYR1 no no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 89.997 83.161 3 0.0080367 2 61948 20150910_Q1_SA_NiHu_Masterprac_group15_C 75.387 53.939 3653700 0 427060 0 0 1112600 2114100 5246 1168;1169 5179 23125;23126;23127 15329;15330 15330 2 MGHTVTVWNRTAEK Unmodified 1628.8093 0.80930946 1168;1169 Q49A26-2;Q49A26;Q49A26-3;Q49A26-4;Q49A26-5 GLYR1 Putative oxidoreductase GLYR1 no no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 80.879 73.741 3;4 8.3529E-08 6 50935 20150910_Q1_SA_NiHu_Masterprac_group10_B 97.957 77.175 40478000 0 4542500 2611100 2124900 14799000 16401000 5247 1168;1169 5180 23128;23129;23130;23131;23132;23133;23134;23135 15331;15332;15333;15334;15335;15336 15336 6 MGPAMGPALGAGIER Unmodified 1426.7061 0.70608995 956 P52272-2;P52272;Q59ES8;F5H7Z1 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 132.49 132.19 2 0.002424 2 85582 20150910_Q1_SA_NiHu_Masterprac_group13_B 59.709 36.824 14669000 0 8541700 0 6127100 0 0 5248 956 5181 23136;23137 15337;15338 15337 1 MGQEFVESKEK Unmodified 1310.6177 0.61765209 1663 Q9Y6W5;Q9Y6W5-2 WASF2 Wiskott-Aldrich syndrome protein family member 2 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 2 1 1 1 66.162 59.665 3 0.02964 2 43754 20150910_Q1_SA_NiHu_Masterprac_group10_C 51.727 23.674 7229200 1873000 0 2758200 1234600 0 1363400 5249 1663 5182 23138;23139;23140;23141;23142 15339;15340 15340 2 MGVLEEGGKGK Unmodified 1103.5645 0.56449431 1191 Q5T3I0;Q5T3I0-3;E9PAV9 GPATCH4 G patch domain-containing protein 4 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 51.687 49.078 2 0.012578 1 35214 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.416 38.831 0 0 0 0 0 0 0 5250 1191 5183 23143 15341 15341 1 MGWSGSGGLGAK Unmodified 1106.5179 0.51787847 1281 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 2 1 1 1 1 106.07 98.369 2 0.0018235 3 66969 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.505 46.058 23802000 2091100 4892300 2811200 2009300 4114200 7883900 5251 1281 5184 23144;23145;23146;23147;23148;23149;23150 15342;15343;15344 15342 3 MGWTGGGLGK Unmodified 962.46439 0.46438634 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 112.4 101.76 2 0.039111 1 68097 20150910_Q1_SA_NiHu_Masterprac_group10_C 53.597 14.634 4555000 2291200 213010 0 0 2050700 0 5252 578 5185 23151;23152;23153 15345 15345 1 MHAADLEKPMVEK Unmodified 1497.732 0.73197035 966 P54278;P54278-3;C9J167;I3L0B5;Q68D20 PMS2;PMS2CL Mismatch repair endonuclease PMS2;Protein PMS2CL yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 89.923 80.974 3 0.0016171 1 55560 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.318 51.415 2497900 0 0 0 0 193740 2304100 5253 966 5186 23154;23155 15346 15346 1 MHETNQGEFITSDSQEALFSK Oxidation (M) 2414.0696 0.069619068 1207 Q5VVJ2;Q5VVJ2-2 MYSM1 Histone H2A deubiquitinase MYSM1 yes no 0 1 0 By matching By matching By MS/MS By matching By matching By matching 1 132.5 114.51 3 3.0752E-32 1 83386 20150910_Q1_SA_NiHu_Masterprac_group13_C 102.43 83.494 10877000 0 0 10877000 0 0 0 5254 1207 5187 23156 15347 15347 147 1 MHETNQGEFITSDSQEALFSK Unmodified 2398.0747 0.074704446 1207 Q5VVJ2;Q5VVJ2-2 MYSM1 Histone H2A deubiquitinase MYSM1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.28 131.68 3 0.013948 1 85173 20150910_Q1_SA_NiHu_Masterprac_group10_B 49.326 36.287 4636900 0 4636900 0 0 0 0 5255 1207 5187 23157 15348 15348 0 MHHGTGPQNVQHQLQR Acetyl (Protein N-term) 1908.9125 0.91254576 1405 Q96L91-4;Q96L91-3;Q96L91-5;Q96L91-2;Q96L91;A7E2D7;F8WCN8 EP400 E1A-binding protein p400 yes no 1 0 0 By MS/MS By matching By matching By matching By matching By matching 1 71.95 63.781 4 0.00046917 1 45871 20150910_Q1_SA_NiHu_Masterprac_group10_C 57.267 32.737 1059300 1059300 0 0 0 0 0 5256 1405 5188 23158 15349 15349 1 MHQFLYEEEAAQQQLVAK Oxidation (M) 2178.0416 0.041553824 1469 Q9BYK8 HELZ2 Helicase with zinc finger domain 2 yes yes 0 1 0 By matching By matching By matching By matching By matching By MS/MS 1 132.56 127.59 3 0.019655 1 87540 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.873 20.798 43838000 0 0 0 0 0 43838000 5257 1469 5189 23159 15350 15350 170 1 MHRDSCPLDCK Acetyl (Protein N-term) 1459.6006 0.6006386 160 B4E241;P84103 SFRS3;SRSF3 Serine/arginine-rich splicing factor 3 yes no 1 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 64.268 62.185 2 0.0089722 3 43597 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.03 58.886 2553600 0 552920 0 0 0 2000700 5258 160 5190 23160;23161;23162;23163 15351;15352;15353 15352 3 MIASDSHRPEVK Unmodified 1368.682 0.68198369 1563;452 Q9NYF8-2;Q9NYF8;Q9NYF8-4;E9PK09;E9PQN2;E9PKI6;E9PJA7;Q9NYF8-3;E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 49.766 43.976 3 0.0018546 7 30762 20150910_Q1_SA_NiHu_Masterprac_group13_B 81.92 42.295 31034000 4122900 3166000 4803600 4688100 6973900 7279800 5259 1563;452 5191 23164;23165;23166;23167;23168;23169 15354;15355;15356;15357;15358;15359;15360 15354 7 MIASDSHRPEVKLK Unmodified 1609.861 0.86101068 1563;452 Q9NYF8-2;Q9NYF8;Q9NYF8-4;E9PK09;E9PQN2;E9PKI6;E9PJA7;Q9NYF8-3;E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 75.838 66.924 4 0.016493 2 46518 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.891 21.466 22859000 5082700 9863400 312590 0 783270 6816900 5260 1563;452 5192 23170;23171;23172;23173;23174 15361;15362 15361 2 MICQQVEAIK Oxidation (M) 1234.605 0.60497892 945 P49792;E9PGT0;Q99666;O14715;Q99666-2;F8W705 RANBP2;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 yes no 0 1 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 97.559 86.292 2 0.033271 1 59287 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.939 42.514 1466600 413450 0 194340 0 413060 445730 5261 945 5193 23175;23176;23177;23178 15363 15363 111 1 MICQQVEAIK Unmodified 1218.6101 0.6100643 945 P49792;E9PGT0;Q99666;O14715;Q99666-2;F8W705 RANBP2;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 105.94 97.211 2 2.6584E-24 2 66119 20150910_Q1_SA_NiHu_Masterprac_group15_B 129.88 81.689 33955000 6788100 3713900 2042800 2626900 8090700 10693000 5262 945 5193 23179;23180;23181;23182;23183;23184 15364;15365 15364 2 MICQQVEAIKK Unmodified 1346.705 0.70502731 945 P49792;E9PGT0;Q99666;O14715;Q99666-2;F8W705 RANBP2;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 88.31 80.632 3 1.7653E-05 3 55082 20150910_Q1_SA_NiHu_Masterprac_group13_B 102.53 76.419 56586000 5158800 11044000 8979500 7523000 11254000 12626000 5263 945 5194 23185;23186;23187;23188;23189;23190 15366;15367;15368 15366 3 MIDSARKQNNFSLAMK Unmodified 1852.9288 0.92877267 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 2 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 107.45 98.697 3;4 0.010039 2 71186 20150910_Q1_SA_NiHu_Masterprac_group15_C 44.691 23.442 21005000 1463500 1820000 3337300 2248200 4246500 7889500 5264 1012 5195 23191;23192;23193;23194;23195;23196 15369;15370 15369 2 MIFDVESMKK Unmodified 1226.6039 0.60391628 815 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 130.87 129.01 3 3.1938E-09 2 83591 20150910_Q1_SA_NiHu_Masterprac_group13_B 114.97 53.408 9810100 0 1789100 0 2986900 0 5034100 5265 815 5196 23197;23198;23199 15371;15372 15371 2 MIGFPSSAGSVSPR Oxidation (M) 1407.6816 0.68164933 834 P13646;CON__P13646-1 KRT13 Keratin, type I cytoskeletal 13 yes no 0 1 0 By matching By matching By matching By matching By matching By MS/MS 1 123.09 118.32 2 0.026845 1 80505 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.106 31.764 0 0 0 0 0 0 0 + 5266 834 5197 23200 15373 15373 83 1 MIINDPRYSALAK Unmodified 1490.7915 0.79153413 438 E9PHJ7;O75400-2;O75400-3;F8W9L2;O75400;F5H578 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 129.55 120.05 3 2.2883E-34 6 84992 20150910_Q1_SA_NiHu_Masterprac_group15_B 119.74 66.663 50392000 8203200 2911600 9442500 5732300 2101200 22001000 5267 438 5198 23201;23202;23203;23204;23205;23206 15374;15375;15376;15377;15378;15379 15376 5 MILIQDGSQNTNVDKPLR Unmodified 2041.0626 0.062623617 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 130.94 123.12 2;3 4.0681E-272 10 85893 20150910_Q1_SA_NiHu_Masterprac_group15_B 177.58 152.66 243760000 40300000 30526000 22530000 15770000 6643600 127990000 5268 1366 5199 23207;23208;23209;23210;23211;23212;23213;23214 15380;15381;15382;15383;15384;15385;15386;15387;15388;15389 15383 10 MILIQDGSQNTNVDKPLRIIGDPYK Oxidation (M) 2843.4851 0.48512836 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 1 2 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 2 1 133.15 128.53 3;4 1.4145E-12 3 86200 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.224 52.904 80395000 0 38460000 0 20330000 21604000 0 5269 1366 5200 23215;23216;23217;23218 15390;15391;15392 15392 158 3 MINTDLSR Unmodified 948.46987 0.46986564 392 E7EWF1;P36578;H3BM89;B4DMJ2 RPL4 60S ribosomal protein L4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 84.626 75.518 2 0.021668 1 52229 20150910_Q1_SA_NiHu_Masterprac_group10_B 78.516 21.235 3542900 560330 1155100 0 0 1827500 0 5270 392 5201 23219;23220;23221 15393 15393 1 MIQPSASGSLVGRENELSAGLSK Unmodified 2330.19 0.19000897 279 C9K0U5;H7C608;E2QRF9;O75496 GMNN Geminin yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 132.39 124.53 3 3.1522E-21 4 87503 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.776 80.56 106570000 0 42942000 33201000 0 0 30431000 5271 279 5202 23222;23223;23224 15394;15395;15396;15397 15395 4 MIRAESGPDLRYEVTSGGGGTSR Unmodified 2395.155 0.15502045 840 P15924;P15924-2 DSP Desmoplakin yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 112.82 105.38 4 0.034564 1 69471 20150910_Q1_SA_NiHu_Masterprac_group10_B 30.869 30.869 4732900 0 1174200 0 0 973290 2585400 5272 840 5203 23225;23226;23227 15398 15398 1 MISEELVAASR Unmodified 1204.6122 0.61217279 1587 Q9UFC0 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 118.97 117.21 2 0.0050676 2 79734 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.881 53.566 4258800 0 1073600 0 524930 0 2660300 5273 1587 5204 23228;23229;23230 15399;15400 15399 2 MISFCPDCGK Unmodified 1213.493 0.49298563 346 E7EMG6;Q8IV63-2;Q8IV63-3;Q8IV63 VRK3 Inactive serine/threonine-protein kinase VRK3 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 122.51 111.03 2 0.0031326 2 79925 20150910_Q1_SA_NiHu_Masterprac_group13_C 91.549 73.884 15339000 1063800 1472200 4747600 0 236160 7818900 5274 346 5205 23231;23232;23233;23234;23235 15401;15402 15401 2 MISKPADSQDVHELVLSK Unmodified 1996.0299 0.029926505 23 A6NHR9;A6NHR9-2 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 118.65 110.41 3;4 2.9876E-32 6 75852 20150910_Q1_SA_NiHu_Masterprac_group15_B 108.97 91.234 44768000 0 2685600 13654000 6635900 901050 20891000 5275 23 5206 23236;23237;23238;23239;23240;23241;23242;23243;23244;23245 15403;15404;15405;15406;15407;15408 15406 6 MIYASSKDAIKK Unmodified 1353.7326 0.73262227 461;980 E9PP50;P23528;G3V1A4;E9PK25;E9PQB7;G3V5P4;Q9Y281;P60981;P60981-2;F6RFD5 CFL1;CFL2;DSTN Cofilin-1;Cofilin-2;Destrin no no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 56.496 55.04 3 0.016185 1 38824 20150910_Q1_SA_NiHu_Masterprac_group13_B 64.224 36.894 2136500 0 439940 0 1696600 0 0 5276 461;980 5207 23246;23247 15409 15409 1 MIYKCPMCR Unmodified 1257.5491 0.54906072 1296 Q8N3J9 ZNF664 Zinc finger protein 664 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 83.274 74.752 3 0.017458 1 56912 20150910_Q1_SA_NiHu_Masterprac_group15_C 71.692 54.778 3978900 0 0 1222300 684470 1925600 146590 5277 1296 5208 23248;23249;23250;23251 15410 15410 1 MKEELAALFSELK Acetyl (Protein N-term);Oxidation (M) 1565.8011 0.80109577 265 C9JQH3;Q86UV6-2;I3L0H3;Q86UV7;Q86UV6 TRIM73;TRIM74 Tripartite motif-containing protein 74;Tripartite motif-containing protein 73 yes no 1 1 1 By matching By matching By matching By matching By MS/MS By matching 1 130.85 113.1 2 0.0032375 1 79950 20150910_Q1_SA_NiHu_Masterprac_group15_C 64.224 11.853 931050 0 0 0 0 931050 0 5278 265 5209 23252 15411 15411 22 0 MKEEVPTALVEAHVRK Unmodified 1835.9928 0.99275314 539 Q8TAQ2-2;F8VTJ5;Q8TAQ2;F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 111.81 106.05 4 5.8531E-18 4 76925 20150910_Q1_SA_NiHu_Masterprac_group13_C 101.2 75.59 19779000 0 3589900 5159000 521240 0 10508000 5279 539 5210 23253;23254;23255;23256 15412;15413;15414;15415 15413 4 MKEIAEAYLGK Unmodified 1251.6533 0.65330932 824 P11142;E9PKE3;P11142-2;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PI65 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 2 2 2 1 1 109.05 102.72 2;3 0.0039054 4 67973 20150910_Q1_SA_NiHu_Masterprac_group10_B 80.312 40.296 11780000 1542800 3437400 0 1698200 2109600 2991800 5280 824 5211 23257;23258;23259;23260;23261;23262;23263;23264 15416;15417;15418;15419 15418 4 MKGCPVNTEPSGPTCEK Unmodified 1890.8274 0.82740365 963 P53701 HCCS Cytochrome c-type heme lyase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 2 1 1 1 1 1 69.012 61.622 3 0.0029306 2 43098 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.469 62.469 10840000 2264600 1092400 1526300 1866300 1885500 2204500 5281 963 5212 23265;23266;23267;23268;23269;23270;23271 15420;15421 15420 2 MKGCPVNTEPSGPTCEKK Unmodified 2018.9224 0.92236667 963 P53701 HCCS Cytochrome c-type heme lyase yes yes 0 0 2 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 62.783 51.98 3 0.01244 2 38597 20150910_Q1_SA_NiHu_Masterprac_group10_C 48.423 35.36 1327100 296660 0 0 0 1030500 0 5282 963 5213 23272;23273 15422;15423 15423 2 MKGTLIDNQFK Unmodified 1293.6751 0.67510739 37 A8MPX7;F5GWL7;Q9H5V9 CXorf56 UPF0428 protein CXorf56 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 105.79 97.703 3 0.027932 1 65050 20150910_Q1_SA_NiHu_Masterprac_group13_B 52.247 25.276 4180100 529350 0 1079000 959400 0 1612400 5283 37 5214 23274;23275;23276;23277 15424 15424 1 MKKMGEMQLSSVTDSK 2 Oxidation (M) 1830.8526 0.85255577 420 E9PD83;F5GZ53;Q13009 TIAM1 T-lymphoma invasion and metastasis-inducing protein 1 yes no 0 2 2 By matching By matching By matching By matching By matching By MS/MS 1 128.97 124.01 3 0.02881 1 83852 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.278 24.178 2798300 0 0 0 0 0 2798300 5284 420 5215 23278 15425 15425 45;46 1 MKLNISFPATGCQK Unmodified 1593.8007 0.80071861 5 A2A3R7;P62753 RPS6 40S ribosomal protein S6 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 133 125.16 3 5.8543E-13 2 85638 20150910_Q1_SA_NiHu_Masterprac_group13_B 104.9 61.107 19067000 10465000 0 0 8601700 0 0 5285 5 5216 23279;23280 15426;15427 15426 2 MKLTWGSS Unmodified 908.44259 0.44258826 1389 Q96GM8;B4DEM6 TOE1 Target of EGR1 protein 1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 130.14 112.15 2 1.042E-31 1 80835 20150910_Q1_SA_NiHu_Masterprac_group13_C 146.58 146.58 3038400 0 0 3038400 0 0 0 5286 1389 5217 23281 15428 15428 0 MKTPVQYSQQQNSPQK Unmodified 1890.9258 0.92579578 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 76.634 67.534 3 0.011431 2 54225 20150910_Q1_SA_NiHu_Masterprac_group13_C 44.691 27.226 7014600 0 1224800 1551100 0 1385700 2852900 5287 919 5218 23282;23283;23284;23285 15429;15430 15429 2 MKVQDQDLPNTPHSK Unmodified 1736.8516 0.85156821 1047 Q08554-2;Q08554 DSC1 Desmocollin-1 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 75.047 68.546 4 0.0056451 1 47719 20150910_Q1_SA_NiHu_Masterprac_group13_B 52.527 27.598 2854800 0 556880 1440800 857100 0 0 5288 1047 5219 23286;23287;23288 15431 15431 1 MLADDAEAGAEDEK Unmodified 1463.6086 0.60860355 1620 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 81.485 74.125 2 0.0011064 5 51008 20150910_Q1_SA_NiHu_Masterprac_group13_B 74.649 62.94 4031000 0 798410 1103800 537670 699790 891330 5289 1620 5220 23289;23290;23291;23292;23293 15432;15433;15434;15435;15436 15432 4 MLATDGAAQQAHTTR Unmodified 1570.7522 0.75218852 546 F8VXI8;Q9H9L4;F8VX10;H0YHR2;H0YIQ8 KANSL2 KAT8 regulatory NSL complex subunit 2 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 66.694 55.54 3 0.036112 1 44592 20150910_Q1_SA_NiHu_Masterprac_group15_C 37.177 26.447 1017400 342110 0 0 0 675260 0 5290 546 5221 23294;23295 15437 15437 1 MLDMGFEPQIRK Unmodified 1463.7265 0.72649104 1361;629;853 P17844;E7ETL9;Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 132.9 121.5 3 7.8858E-08 3 88055 20150910_Q1_SA_NiHu_Masterprac_group15_B 105.03 78.62 60174000 0 0 0 0 5151000 55023000 5291 853;1361;629 5222 23296;23297 15438;15439;15440 15439 3 MLDMGFEPQIRK Oxidation (M) 1479.7214 0.72140566 1361;629;853 P17844;E7ETL9;Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 1 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 130.54 127.76 3 0.007223 2 82712 20150910_Q1_SA_NiHu_Masterprac_group10_B 67.879 47.643 10494000 0 3330500 0 0 0 7163200 5292 853;1361;629 5222 23298;23299 15441;15442 15442 65 1 MLDTDGNEMIEK Unmodified 1394.6058 0.60576678 480 F2Z348;Q8IYU8 MICU2 Calcium uptake protein 2, mitochondrial yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 109.21 99.255 2 0.0014474 1 67552 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.093 75.706 6651700 0 822070 708410 0 1457300 3663900 5293 480 5223 23300;23301;23302;23303 15443 15443 1 MLEELNK Unmodified 875.44225 0.44225391 1447 Q9BTC0 DIDO1 Death-inducer obliterator 1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 82.395 72.919 2 0.036755 1 55747 20150910_Q1_SA_NiHu_Masterprac_group15_C 79.469 0.85303 1147100 0 546810 0 0 600280 0 5294 1447 5224 23304;23305 15444 15444 0 MLEELNKQIEEQK Unmodified 1630.8236 0.82362212 1447 Q9BTC0 DIDO1 Death-inducer obliterator 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 2 1 1 2 117.12 109.12 2;3 1.4472E-73 2 74906 20150910_Q1_SA_NiHu_Masterprac_group15_B 138.02 99.72 16197000 0 3489300 4010500 155330 3345100 5196600 5295 1447 5225 23306;23307;23308;23309;23310;23311;23312;23313 15445;15446 15445 2 MLENTDNSSPSTEHSQGLEK Unmodified 2202.9699 0.96990502 1390 Q96H79 ZC3HAV1L Zinc finger CCCH-type antiviral protein 1-like yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 76.844 68.492 3 4.7659E-39 5 47446 20150910_Q1_SA_NiHu_Masterprac_group13_B 112.01 72.102 145070000 16763000 0 42250000 22560000 32422000 31072000 5296 1390 5226 23314;23315;23316;23317;23318 15447;15448;15449;15450;15451 15448 5 MLENTDNSSPSTEHSQGLEK Oxidation (M) 2218.9648 0.96481965 1390 Q96H79 ZC3HAV1L Zinc finger CCCH-type antiviral protein 1-like yes yes 0 1 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 64.533 57.567 3 1.7919E-14 3 40859 20150910_Q1_SA_NiHu_Masterprac_group10_B 87.419 87.419 8345700 152020 1609600 2530900 369020 1312600 2371600 5297 1390 5226 23319;23320;23321;23322;23323;23324 15452;15453;15454 15454 161 2 MLEYDPAK Unmodified 965.45282 0.4528186 434 E9PH13;P49759;P49759-3;B8ZZR0 CLK1 Dual specificity protein kinase CLK1 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching 2 1 1 1 92.357 84.988 2 0.017081 3 63158 20150910_Q1_SA_NiHu_Masterprac_group15_C 82.279 63.322 7317200 1523200 0 0 1589800 2870800 1333400 5298 434 5227 23325;23326;23327;23328;23329 15455;15456;15457 15456 3 MLGTEGGEGFVVKVR Acetyl (Protein N-term);Oxidation (M) 1635.829 0.82904185 322 D6RBM0;E9PCY7;P31943;G8JLB6;D6RIU0;D6RAM1;D6R9T0;D6RFM3;D6RIT2;D6RDU3;D6RJ04;D6RIH9;E7EQJ0;E5RGV0;E7EN40;D6RDL0;D6RF17;D6R9D3;E5RJ94 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 1 1 1 By matching By matching By matching By MS/MS By matching By matching 1 1 136.23 133.75 2 4.1641E-43 1 86680 20150910_Q1_SA_NiHu_Masterprac_group13_B 119.96 99.306 15514000 0 0 0 15020000 0 494210 5299 322 5228 23330;23331 15458 15458 29 1 MLIEKDPSLEK Unmodified 1301.6901 0.69008876 401 F8WF16;Q8NEY8-6;E9PAX8;F8W6A0;Q8NEY8-8;Q8NEY8-2;F8W0Q9;Q8NEY8-3;Q8NEY8 PPHLN1 Periphilin-1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 98.804 92.457 3 0.012541 3 62040 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.166 5.0174 6946000 697870 1912000 1360200 636630 0 2339300 5300 401 5229 23332;23333;23334;23335;23336 15459;15460;15461 15460 3 MLIFSVRDMFAK 2 Oxidation (M) 1488.7469 0.74689213 1362 Q92878-2 RAD50 DNA repair protein RAD50 yes yes 0 2 1 By matching By MS/MS By matching By matching By matching By matching 1 132.39 131.79 3 0.007946 1 85221 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.942 32.268 4765800 0 4765800 0 0 0 0 5301 1362 5230 23337 15462 15462 154;155 0 MLIYDPAK Unmodified 949.49429 0.49428948 799 P06493;P06493-2 CDK1 Cyclin-dependent kinase 1 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 125.41 113.49 2 0.0074874 3 74509 20150910_Q1_SA_NiHu_Masterprac_group13_B 94.114 45.553 14873000 0 0 4090500 2696800 8086100 0 5302 799 5231 23338;23339;23340 15463;15464;15465 15463 3 MLLSQNESQKIPK Unmodified 1514.8127 0.81266351 20 A6NFX5;Q32NC0 C18orf21 UPF0711 protein C18orf21 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 2 104.58 95.66 2;3 0.00047368 4 65509 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.547 72.686 15749000 683480 1420900 2074700 0 5151600 6418900 5303 20 5232 23341;23342;23343;23344;23345;23346 15466;15467;15468;15469 15467 4 MLNLTDRQVK Unmodified 1216.6598 0.65979168 360 E7EQ07;P31277;H0YIA6;O43248;P31270 HOXD11;HOXA11;HOXC11 Homeobox protein Hox-D11;Homeobox protein Hox-C11;Homeobox protein Hox-A11 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 94.87 86.974 3 0.008731 1 59600 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.525 47.438 13288000 1783800 1063700 1879000 2316400 2158900 4086200 5304 360 5233 23347;23348;23349;23350;23351;23352 15470 15470 1 MLPDKDCRYALYDATYETK Unmodified 2352.0766 0.076618701 461 E9PP50;P23528;G3V1A4;E9PK25;E9PQB7;E9PLJ3 CFL1 Cofilin-1 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 1 130.49 118.63 3;4 0.00053649 4 81754 20150910_Q1_SA_NiHu_Masterprac_group13_C 64.298 37.518 31826000 0 1658100 22533000 0 1030200 6605100 5305 461 5234 23353;23354;23355;23356;23357 15471;15472;15473;15474 15472 4 MLPTLGGEEGVSR Unmodified 1344.6708 0.6707503 657 Q5T7U1;Q9Y5Q8-2;H7BY84;Q9Y5Q8;Q9Y5Q8-3 GTF3C5 General transcription factor 3C polypeptide 5 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 123.56 121.74 2 0.029078 1 78192 20150910_Q1_SA_NiHu_Masterprac_group10_B 44.968 11.929 7312100 0 2117500 0 1117800 0 4076800 5306 657 5235 23358;23359;23360 15475 15475 1 MLQHEPDRAFYGLKQVEK Unmodified 2188.1099 0.10990816 1443 Q9BRX2 PELO Protein pelota homolog yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 120.25 109.22 4 0.026369 1 74806 20150910_Q1_SA_NiHu_Masterprac_group15_B 35.872 14.513 3080600 0 0 701930 0 0 2378600 5307 1443 5236 23361;23362 15476 15476 1 MLQPCGPPADKPEEN Unmodified 1681.744 0.74399159 1459 Q9BWJ5 SF3B5 Splicing factor 3B subunit 5 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 95.229 85.857 2 0.014251 1 58580 20150910_Q1_SA_NiHu_Masterprac_group10_C 52.42 37.432 4582200 4582200 0 0 0 0 0 5308 1459 5237 23363 15477 15477 1 MLRESLKEYQK Unmodified 1423.7493 0.74933497 100 E9PF10;O75694-2;B4DLT2;O75694 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 72.966 67.802 3 0.0074667 2 47090 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.667 61.967 58620000 0 10056000 13838000 11771000 0 22955000 5309 100 5238 23364;23365;23366;23367 15478;15479 15479 2 MLSQDAPTVK Unmodified 1088.5536 0.55359527 736 O60934;F5H3R2 NBN Nibrin yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 81.591 72.942 2 0.0075071 2 50531 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.31 41.446 2799400 0 0 0 0 1468300 1331000 5310 736 5239 23368;23369 15480;15481 15480 2 MLSQDAPTVKESCK Unmodified 1592.7538 0.753828 736 O60934;F5H3R2 NBN Nibrin yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 74.011 66.6 3 3.8502E-08 6 52030 20150910_Q1_SA_NiHu_Masterprac_group15_C 99.669 73.02 6978500 1115000 1227500 1509600 1152900 1025900 947650 5311 736 5240 23370;23371;23372;23373;23374;23375 15482;15483;15484;15485;15486;15487 15485 6 MLSSAYISDHMK Unmodified 1381.637 0.63700733 219 C6G496;P56270;G5E927;I3L2Z5;F5H7A6;H3BQI4;H3BQS2;H3BQD6;I3L411;H3BPU3;I3L4Y2;I3L0M3 MAZ Myc-associated zinc finger protein yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 122.42 112.96 2;3 2.2944E-37 11 80536 20150910_Q1_SA_NiHu_Masterprac_group13_C 127.52 102.45 222880000 38770000 11135000 46011000 21831000 69915000 35223000 5312 219 5241 23376;23377;23378;23379;23380;23381;23382;23383;23384;23385;23386;23387 15488;15489;15490;15491;15492;15493;15494;15495;15496;15497;15498 15491 11 MLSSAYISDHMK Oxidation (M) 1397.6319 0.63192195 219 C6G496;P56270;G5E927;I3L2Z5;F5H7A6;H3BQI4;H3BQS2;H3BQD6;I3L411;H3BPU3;I3L4Y2;I3L0M3 MAZ Myc-associated zinc finger protein yes no 0 1 0 By MS/MS By matching By matching By matching By matching By matching 1 112.48 99.402 3 0.013491 1 66819 20150910_Q1_SA_NiHu_Masterprac_group10_C 55.04 35.413 0 0 0 0 0 0 0 5313 219 5241 23388 15499 15499 18 1 MLVEYTQNQK Unmodified 1252.6122 0.61217279 1530 Q9NQG5;A2A2M0 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 91.314 83.602 2 0.0070719 3 63663 20150910_Q1_SA_NiHu_Masterprac_group13_C 84.817 66.193 6932900 752030 810380 761010 604820 1738400 2266300 5314 1530 5242 23389;23390;23391;23392;23393;23394 15500;15501;15502 15500 3 MMGGAGPGSSLEAR Unmodified 1319.5962 0.59620515 212 B7ZM82;B3KVH1;O95785;O95785-2 WIZ Protein Wiz yes no 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 94.712 88.486 2 0.0011071 3 59835 20150910_Q1_SA_NiHu_Masterprac_group13_B 72.681 51.904 16830000 3037500 2471400 2560300 2577600 0 6183500 5315 212 5243 23395;23396;23397;23398;23399 15503;15504;15505 15503 3 MMGGAGPGSSLEARSPSDLHISPLAK Unmodified 2565.2679 0.26794172 212 B7ZM82;B3KVH1;O95785;O95785-2 WIZ Protein Wiz yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 132.29 132.29 4 2.9717E-16 1 85271 20150910_Q1_SA_NiHu_Masterprac_group13_B 81.696 65.885 21879000 0 0 0 21879000 0 0 5316 212 5244 23400 15506 15506 1 MMLDDIVSR Unmodified 1078.5151 0.51510128 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 133.45 133.14 2 0 2 86609 20150910_Q1_SA_NiHu_Masterprac_group13_B 217.64 133.14 218290000 0 132320000 0 85972000 0 0 5317 1366 5245 23401;23402 15507;15508 15507 2 MMLDDIVSR Oxidation (M) 1094.51 0.5100159 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 1 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 132.09 121.76 2 0.022355 3 86256 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.409 59.257 51540000 29906000 0 0 0 0 21634000 5318 1366 5245 23403;23404;23405 15509;15510;15511 15509 159;160 3 MMLDDIVSRGR Unmodified 1291.6377 0.63767603 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1 132.2 125.3 2;3 4.4193E-20 5 87396 20150910_Q1_SA_NiHu_Masterprac_group15_B 121.5 72.084 108910000 0 9237400 18132000 37745000 4683300 39115000 5319 1366 5246 23406;23407;23408;23409;23410;23411 15512;15513;15514;15515;15516 15515 5 MMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGK Oxidation (M) 4079.9364 0.93640061 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 1 2 By matching By matching By MS/MS By matching By matching By matching 1 1 133.04 115.12 5 4.6613E-20 1 84071 20150910_Q1_SA_NiHu_Masterprac_group13_C 52.872 46.468 114060000 0 0 99756000 0 14307000 0 5320 1366 5247 23412;23413 15517 15517 156;159;160 1 MMLEEQVR Unmodified 1034.4889 0.48888653 1029 Q01664 TFAP4 Transcription factor AP-4 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 100.27 92.593 2 0.014717 1 63263 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.696 48.05 12570000 0 1898900 1915600 652730 1274800 6827700 5321 1029 5248 23414;23415;23416;23417;23418 15518 15518 1 MMLTHLVVRPGLGSK Unmodified 1637.9109 0.91093776 486;430 F5H2G1;F5GWX5;Q14839;Q14839-2;Q12873;E9PG89;Q12873-2 CHD4;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 no no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 2 132.18 122.88 3;4 0.00024128 3 87073 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.738 34.8 110940000 0 0 20593000 0 0 90345000 5322 486;430 5249 23419;23420;23421 15519;15520;15521 15521 3 MMLTHLVVRPGLGSK Oxidation (M) 1653.9059 0.90585239 486;430 F5H2G1;F5GWX5;Q14839;Q14839-2;Q12873;E9PG89;Q12873-2 CHD4;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 no no 0 1 1 By matching By matching By matching By matching By matching By MS/MS 1 130.18 125.21 4 0.0076145 1 84944 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.373 34.716 19251000 0 0 0 0 0 19251000 5323 486;430 5249 23422 15522 15522 48;49 1 MMNGGHYTYSENRVEK Unmodified 1914.8353 0.83526622 1425 Q99497 PARK7 Protein DJ-1 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 2 1 1 1 1 1 72.708 65.217 3;4 0.0058311 2 46392 20150910_Q1_SA_NiHu_Masterprac_group10_C 48.899 37.256 9409800 1521000 1683800 1260600 1113900 1441400 2389300 5324 1425 5250 23423;23424;23425;23426;23427;23428;23429 15523;15524 15524 2 MMREQQQIEK Unmodified 1319.6326 0.63259065 1110 Q14683;H0Y7K8 SMC1A Structural maintenance of chromosomes protein 1A yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 48.311 41.813 3 0.018364 2 29823 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.278 41.002 3496200 452520 754920 1236900 582920 468990 0 5325 1110 5251 23430;23431;23432;23433;23434 15525;15526 15526 2 MNAQETATGMAFEEPIDEK Unmodified 2110.9187 0.91872108 720 O43719;E9PFP2 HTATSF1 HIV Tat-specific factor 1 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 132.79 132.49 2 2.0863E-121 2 85899 20150910_Q1_SA_NiHu_Masterprac_group13_B 138.75 103.71 18497000 0 9253500 0 9243900 0 0 5326 720 5252 23435;23436 15527;15528 15527 2 MNAQETATGMAFEEPIDEKK Unmodified 2239.0137 0.013684093 720 O43719;E9PFP2 HTATSF1 HIV Tat-specific factor 1 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 131.31 119.4 3 5.971E-05 3 83699 20150910_Q1_SA_NiHu_Masterprac_group13_B 69.07 55.446 23737000 0 0 9928200 11333000 2476300 0 5327 720 5253 23437;23438;23439;23440 15529;15530;15531 15529 3 MNCDRVFNVFCLYGNVEKVK Unmodified 2491.181 0.18104097 838 P14866;A6NIT8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 133.84 133.84 3 8.8942E-23 1 87011 20150910_Q1_SA_NiHu_Masterprac_group13_B 94.188 72.718 37065000 0 0 0 37065000 0 0 5328 838 5254 23441 15532 15532 0 MNECTHLIVQEPK Unmodified 1597.7592 0.75924773 1351 Q92547;H0Y8I7 TOPBP1 DNA topoisomerase 2-binding protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 97.127 94.944 3 0.0048322 1 64878 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.157 42.463 2668900 0 924110 0 0 0 1744800 5329 1351 5255 23442;23443 15533 15533 1 MNECTHLIVQEPKGQK Unmodified 1910.9343 0.93425198 1351 Q92547;H0Y8I7 TOPBP1 DNA topoisomerase 2-binding protein 1 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 88.2 79.548 3 8.3904E-27 3 59830 20150910_Q1_SA_NiHu_Masterprac_group15_C 109.99 78.377 12691000 1110800 0 2215100 1939700 2906900 4518900 5330 1351 5256 23444;23445;23446;23447;23448 15534;15535;15536 15536 2 MNGLSRPLIKPQK Unmodified 1480.8548 0.85480309 1363 Q92908-2;Q92908 GATA6 Transcription factor GATA-6 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 85.438 80.199 3 0.0069682 2 55132 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.815 43.902 12952000 0 2338900 3301400 1384900 0 5927100 5331 1363 5257 23449;23450;23451;23452 15537;15538 15537 2 MNGPADGEVDYKK Acetyl (Protein N-term) 1464.6555 0.65549416 633 Q6Y2K3;I3NI13;I3L270;H3BNM4;Q8NBZ0 INO80E INO80 complex subunit E yes no 1 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 95.261 87.298 2 0.0063652 5 64378 20150910_Q1_SA_NiHu_Masterprac_group15_C 61.11 51.267 6941600 1401500 810220 845810 838260 1571900 1474000 5332 633 5258 23453;23454;23455;23456;23457;23458 15539;15540;15541;15542;15543 15541 5 MNINGQWEGEVNGRK Unmodified 1730.8159 0.8158514 924 P46109 CRKL Crk-like protein yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 110.35 106.59 3 0.0072384 1 72990 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.019 43.138 0 0 0 0 0 0 0 5333 924 5259 23459 15544 15544 1 MNLQAQPK Acetyl (Protein N-term) 970.4906 0.49060109 1231 Q6PJG2;F6RU81;C9JYU7 ELMSAN1 ELM2 and SANT domain-containing protein 1 yes no 1 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 101.58 91.977 2 0.0095995 3 62817 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.191 58.41 5883200 0 0 0 0 2317300 3565900 5334 1231 5260 23460;23461;23462 15545;15546;15547 15546 3 MNLQAQPKAQNK Acetyl (Protein N-term) 1411.7242 0.72418285 1231 Q6PJG2;F6RU81;C9JYU7 ELMSAN1 ELM2 and SANT domain-containing protein 1 yes no 1 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 83.495 75.789 2 2.6613E-18 6 52303 20150910_Q1_SA_NiHu_Masterprac_group15_B 116.84 79.237 17456000 3570400 2361800 2053100 2210600 3516000 3744600 5335 1231 5261 23463;23464;23465;23466;23467;23468;23469 15548;15549;15550;15551;15552;15553 15550 5 MNPQIRNPMER Acetyl (Protein N-term) 1426.6809 0.68093783 56 B0QYD2;Q9UH17;Q9UH17-2;B0QYD3 APOBEC3B DNA dC->dU-editing enzyme APOBEC-3B no no 1 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.47 125.51 2 0.0043356 1 85166 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.494 51.67 52211000 0 0 0 0 0 52211000 5336 56 5262 23470 15554 15554 1 MNPQIRNPMK Acetyl (Protein N-term) 1269.6322 0.63219672 1537 Q9NRW3 APOBEC3C DNA dC->dU-editing enzyme APOBEC-3C yes yes 1 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 2 120.1 111.25 2 1.2018E-62 5 76139 20150910_Q1_SA_NiHu_Masterprac_group15_B 148.69 108.82 656140000 24548000 101590000 91763000 28114000 8577100 401550000 5337 1537 5263 23471;23472;23473;23474;23475;23476;23477 15555;15556;15557;15558;15559 15557 5 MNPQIRNPMK Acetyl (Protein N-term);Oxidation (M) 1285.6271 0.62711134 1537 Q9NRW3 APOBEC3C DNA dC->dU-editing enzyme APOBEC-3C yes yes 1 1 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 4 3 2 3 5 102.56 94.794 2 0.0016156 10 55529 20150910_Q1_SA_NiHu_Masterprac_group10_B 80.755 52.178 68035000 755920 11988000 7526400 880310 5467300 41417000 5338 1537 5263 23478;23479;23480;23481;23482;23483;23484;23485;23486;23487;23488;23489;23490;23491;23492;23493;23494;23495 15560;15561;15562;15563;15564;15565;15566;15567;15568;15569 15567 175;176 10 MNPQIRNPMK Acetyl (Protein N-term);2 Oxidation (M) 1301.622 0.62202597 1537 Q9NRW3 APOBEC3C DNA dC->dU-editing enzyme APOBEC-3C yes yes 1 2 1 By matching By matching By matching By matching By matching By MS/MS 1 2 2 62.346 56.047 2 0.0028861 2 39882 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.78 49.149 5970000 0 0 0 175770 594610 5199600 5339 1537 5263 23496;23497;23498;23499;23500 15570;15571 15571 175;176 2 MNRVGNESLNRAVAK Unmodified 1657.8682 0.86822133 1475 Q9GZS1-2;Q9GZS1;E7EX70 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 67.208 60.29 4 0.019788 1 42400 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.621 17.269 4820300 874660 847600 0 0 790740 2307300 5340 1475 5264 23501;23502;23503;23504 15572 15572 1 MNVEEDVQEEQSK Unmodified 1563.6723 0.67226644 428 E9PFK5;P78316-2;P78316;F5H653 NOP14 Nucleolar protein 14 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 86.468 84.436 2 0.0010767 4 57770 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.707 72.692 2215000 0 1080900 0 0 0 1134100 5341 428 5265 23505;23506;23507 15573;15574;15575;15576 15573 4 MNVTPEVK Acetyl (Protein N-term) 958.47937 0.4793677 1191 Q5T3I0;F8W895;E9PPY4;F2Z3C6 GPATCH4 G patch domain-containing protein 4 yes no 1 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 119.68 109.17 2 0.021406 1 77108 20150910_Q1_SA_NiHu_Masterprac_group15_C 67.897 38.736 2722800 0 0 0 0 980170 1742700 5342 1191 5266 23508;23509 15577 15577 1 MNVTPEVKSR Acetyl (Protein N-term) 1201.6125 0.61250714 1191 Q5T3I0;F8W895;E9PPY4;F2Z3C6 GPATCH4 G patch domain-containing protein 4 yes no 1 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 96.548 91.159 2 0.028768 3 61568 20150910_Q1_SA_NiHu_Masterprac_group13_B 61.213 35.916 4850800 0 1077400 1909000 1574600 0 289750 5343 1191 5267 23510;23511;23512;23513;23514 15578;15579;15580 15578 3 MNYCRNPDGEPRPWCFTTDPQK Unmodified 2768.1894 0.18937382 295 CON__P06868 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 2 130.98 124.03 3;4 5.1224E-10 8 85911 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.486 58.757 299360000 49134000 22135000 57365000 51889000 16793000 102040000 + 5344 295 5268 23515;23516;23517;23518;23519;23520;23521;23522;23523 15581;15582;15583;15584;15585;15586;15587;15588 15585 8 MNYCRNPDGEPRPWCFTTDPQK Oxidation (M) 2784.1843 0.18428845 295 CON__P06868 yes yes 0 1 2 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 130.78 113.64 4 5.8138E-06 4 76683 20150910_Q1_SA_NiHu_Masterprac_group10_C 77.031 61.485 71313000 48673000 0 13229000 0 9410100 0 + 5345 295 5268 23524;23525;23526 15589;15590;15591;15592 15592 26 4 MPCQSLQPEPINTPTHTK Unmodified 2077.9925 0.99249514 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 110.33 101.45 3 0.0010537 4 69096 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.225 67.597 13985000 1400000 2570000 2055900 1433200 548850 5977200 5346 919;920 5269 23527;23528;23529;23530;23531;23532 15593;15594;15595;15596 15595 4 MPGSVIPPPLVRGGQQASSK Unmodified 2005.0779 0.077879751 170 Q86YP4;B5MC40;Q86YP4-2;B4DKZ7 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 131.91 124.06 3 3.6614E-07 3 84215 20150910_Q1_SA_NiHu_Masterprac_group10_B 88.319 66.546 27227000 0 6905800 5899900 0 0 14421000 5347 170 5270 23533;23534;23535 15597;15598;15599 15599 3 MPKMKMPTFSTPGAK 2 Oxidation (M) 1682.8194 0.81940514 1054 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 0 2 2 By matching By MS/MS By matching By matching By matching By matching 1 133.8 133.2 2 0.007711 1 86931 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.53 26.315 0 0 0 0 0 0 0 5348 1054 5271 23536 15600 15600 128;129 1 MPTKEDEEEDEPVVIK Unmodified 1886.8819 0.88192486 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 3 2 2 3 104.46 95.605 2;3 2.3557E-37 7 64115 20150910_Q1_SA_NiHu_Masterprac_group10_B 114.01 114.01 27265000 0 3301800 5033600 2394300 1278400 15257000 5349 1611 5272 23537;23538;23539;23540;23541;23542;23543;23544;23545;23546;23547 15601;15602;15603;15604;15605;15606;15607 15607 7 MPVIQTESEHK Acetyl (Protein N-term);Oxidation (M) 1355.6391 0.63911582 450 E9PJU8;Q9H0W9-4 C11orf54 yes no 1 1 0 By matching By matching By matching By matching By MS/MS By matching 1 132.44 114.69 2 0.018237 1 81484 20150910_Q1_SA_NiHu_Masterprac_group15_C 43.419 21.343 1101700 0 0 0 0 1101700 0 5350 450 5273 23548 15608 15608 50 0 MPWVEPK Acetyl (Protein N-term);Oxidation (M) 943.44734 0.44733929 685 Q3KNS1;I3L499 PTCHD3 Patched domain-containing protein 3 yes no 1 1 0 By matching By matching By matching By matching By matching By MS/MS 1 2 91.633 84.765 2 0.029778 2 58185 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.37 12.367 2185500 0 0 254360 0 0 1931200 5351 685 5274 23549;23550;23551 15609;15610 15609 68 0 MQASIEKGGSLPK Unmodified 1344.7071 0.7071358 801 P06748-2;P06748 NPM1 Nucleophosmin yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 2 2 81.435 74.169 2;3 7.9807E-60 11 52190 20150910_Q1_SA_NiHu_Masterprac_group10_C 132.86 64.205 283320000 84197000 38158000 20383000 26027000 71958000 42599000 5352 801 5275 23552;23553;23554;23555;23556;23557;23558;23559;23560;23561;23562;23563;23564;23565 15611;15612;15613;15614;15615;15616;15617;15618;15619;15620;15621 15621 11 MQASIEKGGSLPK Oxidation (M) 1360.7021 0.70205043 801 P06748-2;P06748 NPM1 Nucleophosmin yes no 0 1 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 65.547 58.729 2 0.019539 1 47005 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.149 34.371 3035900 436100 487080 0 0 1637000 475680 5353 801 5275 23566;23567;23568;23569 15622 15622 80 0 MQASIEKGGSLPKVEAK Unmodified 1771.9502 0.95021962 801 P06748-2;P06748 NPM1 Nucleophosmin yes no 0 0 2 By MS/MS By matching By matching By matching By MS/MS By matching 2 2 2 2 1 1 96.724 90.001 3;4 0.0005298 3 61307 20150910_Q1_SA_NiHu_Masterprac_group10_C 85.988 58.96 70987000 50847000 4990300 5955600 6998500 0 2196500 5354 801 5276 23570;23571;23572;23573;23574;23575;23576;23577;23578;23579 15623;15624;15625 15624 2 MQDKTQMQEKAK 2 Oxidation (M) 1496.6963 0.69631312 718 O43665-2;O43665;O43665-3 RGS10 Regulator of G-protein signaling 10 yes no 0 2 2 By matching By matching By matching By matching By matching By MS/MS 1 95.891 93.534 2 0.035797 1 63846 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.516 6.0007 0 0 0 0 0 0 0 5355 718 5277 23580 15626 15626 74;75 1 MQIKRNTNSVPETAPAAIPETK Unmodified 2395.2529 0.25294358 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 113.88 98.496 4 0.0065234 1 72381 20150910_Q1_SA_NiHu_Masterprac_group13_C 41.615 34.198 3222600 1725600 0 1497000 0 0 0 5356 352;968 5278 23581;23582 15627 15627 1 MQKENHFLIFVK Unmodified 1532.8174 0.81735495 1049 Q08AF3;Q08AF3-2;B4E128 SLFN5 Schlafen family member 5 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 132 132 3 0.0018523 1 85008 20150910_Q1_SA_NiHu_Masterprac_group13_B 81.625 44.481 5476400 0 0 0 5476400 0 0 5357 1049 5279 23583 15628 15628 1 MQNDTAENETTEKEEK Unmodified 1895.8055 0.80546546 396 Q05682-5;E9PGZ1;Q05682-4;F5H1Z9;E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;C9J813 CALD1 Caldesmon yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 38.434 33.25 3 0.0014774 1 22981 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.615 63.453 4172300 536800 0 755470 500880 944300 1434900 5358 396 5280 23584;23585;23586;23587;23588 15629 15629 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQK Acetyl (Protein N-term) 3064.5261 0.52609875 877;878 P26367;E9PKM0;B1B1I8;B1B1I9;B1B1J0;P26367-2 PAX6 Paired box protein Pax-6 no no 1 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 132.48 126.28 4 4.4067E-19 3 85270 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.678 58.144 64884000 0 11584000 34718000 18583000 0 0 5359 877;878 5281 23589;23590;23591 15630;15631;15632 15632 3 MQQENMKPQEQLTLEPYER Unmodified 2391.1199 0.1198805 862 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 130.54 130.23 3 4.9555E-65 2 83357 20150910_Q1_SA_NiHu_Masterprac_group10_B 119.68 103.28 29381000 0 15327000 0 14054000 0 0 5360 862 5282 23592;23593 15633;15634 15634 2 MQQENMKPQEQLTLEPYER Oxidation (M) 2407.1148 0.11479512 862 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 1 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 2 1 1 2 125.91 118.4 3 8.0601E-52 5 77112 20150910_Q1_SA_NiHu_Masterprac_group10_C 118.96 89.235 26733000 8062800 1949000 0 604450 10895000 5222400 5361 862 5282 23594;23595;23596;23597;23598;23599;23600;23601 15635;15636;15637;15638;15639 15638 93;94 5 MQQEVVEMR Unmodified 1148.5318 0.53181397 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 89.146 81.451 2 0.00055692 6 60700 20150910_Q1_SA_NiHu_Masterprac_group15_C 110.53 54.1 40374000 2496200 6562300 5291600 3856000 6483200 15685000 5362 1611 5283 23602;23603;23604;23605;23606;23607 15640;15641;15642;15643;15644;15645 15643 6 MQQEVVEMRK Unmodified 1276.6268 0.62677699 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 2 2 2 1 2 68.328 61.966 2;3 0.00024231 3 43524 20150910_Q1_SA_NiHu_Masterprac_group15_B 106.16 50.696 87343000 4159300 11537000 23390000 7525900 13245000 27485000 5363 1611 5284 23608;23609;23610;23611;23612;23613;23614;23615;23616;23617 15646;15647;15648 15648 3 MQQEVVEMRKK Unmodified 1404.7217 0.72174001 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 54.252 48.06 3 0.0071605 3 34493 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.134 35.344 14133000 1094500 2040400 4533900 2701700 1640600 2122300 5364 1611 5285 23618;23619;23620;23621;23622;23623 15649;15650;15651 15650 3 MQSTLISAAR Unmodified 1076.5648 0.56482866 162 B4E2Z2;P43246;E9PHA6;E7EU21;B4DL39;B4DSB9;E9PCI8 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 98.51 89.059 2 0.022744 1 61024 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.344 39.351 3095500 0 0 0 0 521550 2573900 5365 162 5286 23624;23625 15652 15652 1 MRATPLAAPAGSLSR Unmodified 1497.8086 0.80858118 57 B0QYQ2;Q96RU7 TRIB3 Tribbles homolog 3 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 114.72 99.552 3 0.013526 2 66616 20150910_Q1_SA_NiHu_Masterprac_group10_C 45.614 21.083 1468200 743360 0 0 0 724890 0 5366 57 5287 23626;23627 15653;15654 15654 2 MRDSTGAGNSLVHK Unmodified 1471.7202 0.72016011 62 B1AKT6;Q9Y483 MTF2 Metal-response element-binding transcription factor 2 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 48.987 42.429 3 0.0052404 2 30285 20150910_Q1_SA_NiHu_Masterprac_group10_B 56.46 32.108 2339300 503810 338380 502910 566620 427550 0 5367 62 5288 23628;23629;23630;23631;23632 15655;15656 15656 2 MREIVHLQAGQCGNQIGAK Oxidation (M) 2125.0521 0.052075706 1007 P68371;B4DFH6;B4DJ43;P04350 TUBB4B;TUBB4A Tubulin beta-4B chain;Tubulin beta-4A chain yes no 0 1 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 94.143 86.264 3;4 2.9253E-09 6 65484 20150910_Q1_SA_NiHu_Masterprac_group13_C 89.502 76.227 36761000 5147300 5168800 8003700 4987600 5882400 7571200 5368 1007 5289 23633;23634;23635;23636;23637;23638;23639 15657;15658;15659;15660;15661;15662 15658 121 6 MREIVHLQAGQCGNQIGAK Unmodified 2109.0572 0.057161084 1007 P68371;B4DFH6;B4DJ43;P04350 TUBB4B;TUBB4A Tubulin beta-4B chain;Tubulin beta-4A chain yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 3 4 3 106.94 97.671 3;4 4.3454E-262 14 66489 20150910_Q1_SA_NiHu_Masterprac_group15_B 172.42 153.84 265270000 34811000 42256000 49149000 41542000 31547000 65963000 5369 1007 5289 23640;23641;23642;23643;23644;23645;23646;23647;23648;23649;23650;23651;23652;23653;23654;23655;23656;23657;23658;23659 15663;15664;15665;15666;15667;15668;15669;15670;15671;15672;15673;15674;15675;15676 15667 14 MRQIASNSPGSSPK Unmodified 1458.7249 0.72491113 1473 Q9C0D5;Q9C0D5-2 TANC1 Protein TANC1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 47.979 41.436 3 0.038671 1 29586 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.746 17.691 949760 0 0 0 0 527240 422520 5370 1473 5290 23660;23661 15677 15677 1 MRSSPALFSSR Acetyl (Protein N-term);Oxidation (M) 1295.6292 0.62921983 712 O43236-4 yes yes 1 1 1 By matching By matching By MS/MS By matching By matching By matching 1 84.104 67.713 3 0.010726 1 54270 20150910_Q1_SA_NiHu_Masterprac_group13_C 58.511 30.151 0 0 0 0 0 0 0 5371 712 5291 23662 15678 15678 73 1 MSAATVLSR Unmodified 934.4906 0.49060109 170 Q86YP4;B5MC40;Q86YP4-2;B4DKZ7;F5H7D9;H7C3H1 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 92.322 90.239 2 0.013568 1 61788 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.489 53.384 6093100 0 2222800 0 0 0 3870300 5372 170 5292 23663;23664 15679 15679 1 MSAATVLSREPYMCAQCK Unmodified 2101.9417 0.9417219 170 Q86YP4;B5MC40;Q86YP4-2;B4DKZ7;F5H7D9;H7C3H1 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 131.76 126.8 3 8.1351E-156 1 86647 20150910_Q1_SA_NiHu_Masterprac_group15_B 151.8 136.53 66473000 0 0 0 0 0 66473000 5373 170 5293 23665 15680 15680 1 MSAATVLSREPYMCAQCK Oxidation (M) 2117.9366 0.93663652 170 Q86YP4;B5MC40;Q86YP4-2;B4DKZ7;F5H7D9;H7C3H1 GATAD2A Transcriptional repressor p66-alpha yes no 0 1 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 114.89 113.88 3 0.021357 2 77870 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.288 39.422 819800 0 819800 0 0 0 0 5374 170 5293 23666;23667 15681;15682 15681 14 2 MSAVDGQRQVGVGYVDSIQRK Unmodified 2292.1645 0.16446293 162 B4E2Z2;P43246;E9PHA6;E7EU21;E7EQQ1;C9J809 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 2 1 123.48 111.87 3;4 4.0791E-06 5 79902 20150910_Q1_SA_NiHu_Masterprac_group13_C 81.316 66.658 25067000 3651400 2052600 17329000 0 0 2033900 5375 162 5294 23668;23669;23670;23671;23672 15683;15684;15685;15686;15687 15684 5 MSAVSQDAIEDSR Unmodified 1407.63 0.63000769 1576 Q9P275;Q9P275-2;E9PEW0 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 92.334 84.489 2 5.546E-75 6 62544 20150910_Q1_SA_NiHu_Masterprac_group15_C 142.38 115.67 39811000 2910000 7231800 5615000 3838200 7925600 12290000 5376 1576 5295 23673;23674;23675;23676;23677;23678 15688;15689;15690;15691;15692;15693 15691 5 MSAVSQDAIEDSR Oxidation (M) 1423.6249 0.62492232 1576 Q9P275;Q9P275-2;E9PEW0 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 1 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 70.021 68.867 2 0.0068 2 47900 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.632 64.045 2396100 0 0 0 0 0 2396100 5377 1576 5295 23679;23680 15694;15695 15694 177 2 MSAVSQDAIEDSRQAR Unmodified 1762.8268 0.82681002 1576 Q9P275;Q9P275-2;E9PEW0 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 88.645 80.95 3 0.0011647 6 55183 20150910_Q1_SA_NiHu_Masterprac_group13_B 79.875 61.484 37705000 7674000 3740600 6743000 6939300 4975000 7633600 5378 1576 5296 23681;23682;23683;23684;23685;23686 15696;15697;15698;15699;15700;15701 15696 6 MSELSSSRPK Unmodified 1120.5547 0.55465791 1107 Q14527;Q14527-2;E7ESN4;F5H3D6 HLTF Helicase-like transcription factor yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 43.634 37.091 2 0.011123 2 26287 20150910_Q1_SA_NiHu_Masterprac_group10_B 88.056 42.458 3056100 0 876490 2179600 0 0 0 5379 1107 5297 23687;23688 15702;15703 15703 2 MSFPTLQDHRK Unmodified 1358.6765 0.67650438 1545 Q9NUA8;F8WAI8 ZBTB40 Zinc finger and BTB domain-containing protein 40 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 1 1 1 104.56 95.726 3 0.012788 3 69613 20150910_Q1_SA_NiHu_Masterprac_group15_C 53.08 33.624 4284800 1072400 780640 0 0 896330 1535400 5380 1545 5298 23689;23690;23691;23692;23693 15704;15705;15706 15705 3 MSFRGFNPEVEK Unmodified 1439.6867 0.68673471 1427 Q99547;H3BSB3;H3BNT4 MPHOSPH6 M-phase phosphoprotein 6 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.46 125.49 3 0.0018294 1 85196 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.705 35.862 10072000 0 0 0 0 0 10072000 5381 1427 5299 23694 15707 15707 1 MSGALDVLQMK Acetyl (Protein N-term);2 Oxidation (M) 1265.5996 0.59955919 16 C9JQR9;C9J9K3;P08865;A6NE09 RPSAP58;RPSA 40S ribosomal protein SA yes no 1 2 0 By matching By MS/MS By matching By matching By matching By matching 1 1 111.14 108.51 2 0.0092214 1 71533 20150910_Q1_SA_NiHu_Masterprac_group10_B 43.68 22.308 843330 0 183120 0 0 0 660210 5382 16 5300 23695;23696 15708 15708 3;4 0 MSLIDLAGSERASSTHAK Unmodified 1872.9364 0.93636047 675 H9KV46;Q86Y91;Q86Y91-2;Q86Y91-3;Q86Y91-4 KIF18B Kinesin-like protein KIF18B yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 129.78 129.48 4 0.00036625 2 82843 20150910_Q1_SA_NiHu_Masterprac_group13_B 71.08 71.08 8415900 0 2882100 0 5533800 0 0 5383 675 5301 23697;23698 15709;15710 15709 2 MSMKEVDEQMLNVQNK Unmodified 1922.89 0.8900039 1007;542 P68371;E7EWR1;Q5ST81;F5H8C9;Q9BVA1;Q13885;F5H894;F8VUJ7;Q5JP53;F8VYX6;F8VW92;P07437 TUBB4B;TUBB;TUBB2B;TUBB2A Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta chain no no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 132.15 127.18 3 1.0432E-15 2 84482 20150910_Q1_SA_NiHu_Masterprac_group10_B 100.18 80.52 23374000 0 0 0 0 0 23374000 5384 1007;542 5302 23699;23700 15711;15712 15712 2 MSMTGAGKSPPSVQSLAMR Unmodified 1934.9376 0.9376228 7 Q96KQ7-2;B0UZY3;Q96KQ7;B0UZY0;A2ABF8;B0UZY1;A2ABF9;Q96KQ7-3 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 130.19 129.59 3 0.018976 1 83057 20150910_Q1_SA_NiHu_Masterprac_group10_B 37.925 24.863 3772100 0 3772100 0 0 0 0 5385 7 5303 23701 15713 15713 1 MSPSGGAPQTTPTLR Unmodified 1499.7402 0.74022685 1466 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 96.745 87.171 2 0.0084626 4 59718 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.405 23.99 2705000 0 0 923060 0 0 1782000 5386 1466 5304 23702;23703;23704 15714;15715;15716;15717 15714 4 MSPYKDILETHLREK Unmodified 1858.9611 0.96111866 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 127.88 118.38 4 1.833E-13 5 81395 20150910_Q1_SA_NiHu_Masterprac_group13_C 103.13 83.086 44359000 9766600 481980 23300000 3902100 2776100 4132200 5387 1012 5305 23705;23706;23707;23708;23709;23710 15718;15719;15720;15721;15722 15719 5 MSQLFHR Unmodified 917.45416 0.454156 1122 Q14CA3;Q14669;Q14CF1 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 76.584 70.636 2 0.019919 1 48911 20150910_Q1_SA_NiHu_Masterprac_group15_B 105.39 52.707 1514200 0 0 205320 104840 0 1204100 5388 1122 5306 23711;23712;23713 15723 15723 1 MSSLGAGVTSAK Unmodified 1107.5594 0.55940893 195 B7Z8L0;Q92833;B7Z7X9;Q92833-2;F5H590 JARID2 Protein Jumonji yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 82.288 73.315 2 0.017639 1 50957 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.034 38.096 1384800 0 0 448270 0 0 936490 5389 195 5307 23714;23715 15724 15724 1 MSSPLADAK Unmodified 918.44807 0.44806757 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 78.72 71.689 2 0.0061789 5 55140 20150910_Q1_SA_NiHu_Masterprac_group15_C 99.013 50.257 20778000 4951100 2296900 4574500 2372700 3063500 3519000 5390 531 5308 23716;23717;23718;23719;23720;23721;23722;23723 15725;15726;15727;15728;15729 15727 5 MSTSQNSIPFEHHGK Unmodified 1698.7784 0.77840327 932 P48730-2;B4DIJ9 CSNK1D Casein kinase I isoform delta yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 2 2 2 2 2 2 82.975 75.406 3;4 0.0060073 4 58984 20150910_Q1_SA_NiHu_Masterprac_group13_C 50.102 37.785 22454000 1414300 3736900 4274000 1615700 2022900 9389900 5391 932 5309 23724;23725;23726;23727;23728;23729;23730;23731;23732;23733;23734;23735 15730;15731;15732;15733 15730 4 MSTVSELR Unmodified 921.45897 0.45896661 193 B7Z6Q6;Q99661;Q99661-2;Q5JR91;B7Z7M6;Q5JR89 KIF2C Kinesin-like protein KIF2C yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 81.636 69.788 2 0.0064013 2 48792 20150910_Q1_SA_NiHu_Masterprac_group10_B 107.01 55.672 14279000 0 4671400 5752000 0 3855900 0 5392 193 5310 23736;23737;23738 15734;15735 15735 2 MSVDAVEIETLRK Unmodified 1489.781 0.78102903 90 P78347-2;P78347-4;P78347-3;B4DH52;P78347;Q86U51 GTF2I General transcription factor II-I yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.62 131.01 3 0.035108 1 84452 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.181 36.355 0 0 0 0 0 0 0 5393 90 5311 23739 15736 15736 1 MTEADVNPK Acetyl (Protein N-term) 1045.475 0.4750106 969 P55769 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes yes 1 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 95.547 87.618 2 0.0088116 2 66037 20150910_Q1_SA_NiHu_Masterprac_group13_C 72.243 50.557 8163400 1082200 678310 623940 1331000 2451500 1996400 5394 969 5312 23740;23741;23742;23743;23744;23745 15737;15738 15737 2 MTGEEGKEVITEIEK Unmodified 1691.8288 0.82876708 1201 Q5UIP0-2;Q5UIP0;H7BZN3;C9J1D6;B4DS49 RIF1 Telomere-associated protein RIF1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 126.45 119.39 2;3 0.0012736 2 82381 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.261 55.471 6073600 2460100 1073800 0 0 0 2539800 5395 1201 5313 23746;23747;23748 15739;15740 15739 2 MTHNLLLNYGLYRK Oxidation (M) 1750.9189 0.91885991 1086;1358 Q92769;H3BM24;B3KRS5;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9;E5RK19;Q13547;Q5TEE2 HDAC2;HDAC1 Histone deacetylase 2;Histone deacetylase;Histone deacetylase 1 no no 0 1 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 2 131.59 128.28 3;4 8.6082E-86 5 86600 20150910_Q1_SA_NiHu_Masterprac_group15_B 139.86 126.44 176090000 0 0 0 3108900 0 172980000 5396 1358;1086 5314 23749;23750;23751 15741;15742;15743;15744;15745 15743 131 5 MTHNLLLNYGLYRK Unmodified 1734.9239 0.92394529 1086;1358 Q92769;H3BM24;B3KRS5;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9;E5RK19;Q13547;Q5TEE2 HDAC2;HDAC1 Histone deacetylase 2;Histone deacetylase;Histone deacetylase 1 no no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 2 1 1 132.48 117.8 3;4 5.7657E-104 4 87474 20150910_Q1_SA_NiHu_Masterprac_group15_B 143.55 143.55 150930000 0 0 54360000 0 5110800 91455000 5397 1358;1086 5314 23752;23753;23754;23755 15746;15747;15748;15749 15748 4 MTLDQQHIETPGQNIPTK Unmodified 2050.0153 0.015339073 253 C9JJ88;Q2KHR3-2;Q2KHR3 QSER1 Glutamine and serine-rich protein 1 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 130.41 114.72 3 1.5237E-08 1 76001 20150910_Q1_SA_NiHu_Masterprac_group10_C 93.427 77.254 5769300 5769300 0 0 0 0 0 5398 253 5315 23756 15750 15750 1 MTPFPATSAAPEPHPSTSTAQPVTPKPTSQATR Unmodified 3388.6722 0.67215387 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;H0Y6Z8 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 130.19 113.04 4 3.2558E-19 3 80803 20150910_Q1_SA_NiHu_Masterprac_group13_C 65.165 54.988 88882000 48963000 0 25293000 0 14625000 0 5399 1109 5316 23757;23758;23759 15751;15752;15753 15751 3 MTSAPSQPLQTISR Unmodified 1515.7715 0.77152697 1193 Q5T670;Q7L590-2;Q7L590 MCM10 Protein MCM10 homolog yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 114.14 104.97 2 0.0032268 1 71701 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.196 40.442 3357600 534380 500340 0 0 1528700 794240 5400 1193 5317 23760;23761;23762;23763 15754 15754 1 MTSLETKTSDTETEPSK Unmodified 1883.867 0.86700308 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 3 2 68.477 61.271 2;3 2.5332E-73 8 44689 20150910_Q1_SA_NiHu_Masterprac_group10_C 127.61 127.61 44682000 9471200 8856600 7825900 4180400 5447000 8900400 5401 919;920 5318 23764;23765;23766;23767;23768;23769;23770;23771;23772;23773;23774;23775 15755;15756;15757;15758;15759;15760;15761;15762 15762 8 MTVEYVYER Unmodified 1188.5485 0.5485099 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 118.05 110.75 2 0.022125 1 75812 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.657 46.128 6914100 0 0 0 812690 350650 5750800 5402 578 5319 23776;23777;23778 15763 15763 1 MTVNNLHPR Unmodified 1080.5498 0.5498473 1465 Q9BY77;Q9BY77-2;B4DMM2 POLDIP3 Polymerase delta-interacting protein 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 61.198 60.044 2 7.3486E-15 1 42215 20150910_Q1_SA_NiHu_Masterprac_group15_B 120.87 97.515 0 0 0 0 0 0 0 5403 1465 5320 23779 15764 15764 1 MVAAANEIAKER Unmodified 1301.6762 0.67617003 1280 Q8IWC1-2;Q8IWC1;Q8IWC1-3 MAP7D3 MAP7 domain-containing protein 3 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 93.245 76.453 3 0.015966 1 59635 20150910_Q1_SA_NiHu_Masterprac_group13_C 75.819 32.512 0 0 0 0 0 0 0 5404 1280 5321 23780 15765 15765 1 MVAAVACAQVPK Unmodified 1243.6417 0.64169877 326 D6RD67;Q9HCC0-2;Q9HCC0 MCCC2 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 111.91 101.33 2 2.8555E-09 1 69156 20150910_Q1_SA_NiHu_Masterprac_group15_B 107.06 70.47 2203000 0 0 418330 0 0 1784700 5405 326 5322 23781;23782 15766 15766 1 MVAIDCEMVGTGPKGHVSSLAR Unmodified 2314.1232 0.12319174 1509 Q9H9L3 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 2 2 1 130.57 126.93 3;4 8.1202E-34 6 83261 20150910_Q1_SA_NiHu_Masterprac_group13_B 105.79 81.891 56798000 4086900 12667000 0 22097000 0 17947000 5406 1509 5323 23783;23784;23785;23786;23787;23788 15767;15768;15769;15770;15771;15772 15768 6 MVCSPVTVR Unmodified 1047.5205 0.52052101 34 Q96HA1-2;A8CG34-2;Q96HA1-3;A8MXF9;A8CG34;Q96HA1;A8MY32 POM121;POM121C Nuclear envelope pore membrane protein POM 121;Nuclear envelope pore membrane protein POM 121C yes no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 95.628 87.699 2 0.029695 2 59546 20150910_Q1_SA_NiHu_Masterprac_group13_B 64.654 41.873 9357100 594100 949250 835250 802870 2385900 3789800 5407 34 5324 23789;23790;23791;23792;23793;23794 15773;15774 15773 2 MVDNRGFMVTR Unmodified 1324.638 0.63801038 108 E9PKH2;B4DN87;P50454;E9PK86;E9PMI5;E9PR70;E9PPV6 SERPINH1 Serpin H1 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 101.46 92.308 3 0.021966 1 62373 20150910_Q1_SA_NiHu_Masterprac_group13_B 54.784 26.552 4988000 0 0 585920 681540 1983300 1737300 5408 108 5325 23795;23796;23797;23798 15775 15775 1 MVFQENSR Unmodified 1009.4651 0.46511462 1040 Q06124;Q06124-2;Q06124-3 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 71.94 65.337 2 0.0080229 2 45647 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.629 53.876 3542000 0 261490 0 0 1354300 1926100 5409 1040 5326 23799;23800;23801 15776;15777 15776 2 MVGTTSVVK Unmodified 920.5001 0.50010314 1162 Q2TAL8 QRICH1 Glutamine-rich protein 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 71.717 64.372 2 0.025209 1 44978 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.962 24.093 12675000 1044700 1473800 3293900 1193800 2127400 3541100 5410 1162 5327 23802;23803;23804;23805;23806;23807 15778 15778 1 MVKQPCPSESDIITEEDK Unmodified 2104.9657 0.96567127 741 O75475;O75475-2 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 104.61 102.28 3 0.0040835 1 67525 20150910_Q1_SA_NiHu_Masterprac_group10_B 48.372 26.176 1925200 0 763100 0 0 0 1162100 5411 741 5328 23808;23809 15779 15779 1 MVKQPCPSESDIITEEDKSK Unmodified 2320.0927 0.092662696 741 O75475;O75475-2 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 102.57 94.358 4 0.00011703 6 64418 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.396 54.279 8971600 2165500 1385700 2162300 0 0 3258200 5412 741 5329 23810;23811;23812;23813 15780;15781;15782;15783;15784;15785 15782 6 MVLCSQQWK Unmodified 1178.5576 0.55763479 455 E9PKP7;P17480-2;P17480 UBTF Nucleolar transcription factor 1 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 117.01 107.88 2 6.2868E-42 3 76273 20150910_Q1_SA_NiHu_Masterprac_group15_C 141.52 112.6 14490000 0 3599900 1568600 1211900 8109600 0 5413 455 5330 23814;23815;23816;23817 15786;15787;15788 15787 3 MVNDAEPDTK Unmodified 1118.4914 0.49138895 1550 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 43.233 38.044 2 0.0085553 2 30500 20150910_Q1_SA_NiHu_Masterprac_group13_C 81.625 65.618 4472500 634310 886280 2080300 390230 215690 265710 5414 1550 5331 23818;23819;23820;23821;23822;23823 15789;15790 15789 2 MVPSEFSTGPVEK Unmodified 1406.6752 0.67516697 417 Q6PI98;Q6PI98-3;E9PCS7 INO80C INO80 complex subunit C yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 121.1 114.02 2 0.0029511 2 75541 20150910_Q1_SA_NiHu_Masterprac_group10_C 64.313 50.727 6022400 4098800 511720 0 0 0 1411900 5415 417 5332 23824;23825;23826 15791;15792 15792 2 MVRESVEQQADSFK Unmodified 1652.7828 0.78281994 336 O60313;E5KLK1;E5KLJ6;E5KLJ9;O60313-2;E5KLJ5 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 98.395 89.372 3 0.001128 4 61245 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.789 54.204 8638500 0 0 1534600 1046600 2025200 4032100 5416 336 5333 23827;23828;23829;23830 15793;15794;15795;15796 15795 4 MVSAAFMK Unmodified 883.42958 0.42958073 873 P25205;Q7Z6P5;E9PF11 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 2 1 2 109.49 102.39 1;2 0.013989 4 69803 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.604 25.994 48875000 4151200 6845900 10566000 5998000 1782800 19532000 5417 873 5334 23831;23832;23833;23834;23835;23836;23837;23838 15797;15798;15799;15800 15799 4 MVSAEISENRK Unmodified 1262.6289 0.62888548 249 Q6IQ49-2;C9JIQ2;Q6IQ49;Q6IQ49-3 SDE2 Protein SDE2 homolog yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 60.53 53.871 3 0.0008581 5 44251 20150910_Q1_SA_NiHu_Masterprac_group13_C 90.827 45.964 15568000 1129800 1275900 1816700 1001800 3080600 7263400 5418 249 5335 23839;23840;23841;23842;23843;23844 15801;15802;15803;15804;15805 15802 4 MVTETEETQEK Unmodified 1323.5864 0.58641154 249 Q6IQ49-2;C9JIQ2;Q6IQ49;Q6IQ49-3 SDE2 Protein SDE2 homolog yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 47.896 42.29 2 1.5856E-29 5 29466 20150910_Q1_SA_NiHu_Masterprac_group13_B 125.23 90.531 13065000 1087300 2596300 4489100 1084100 1519700 2288700 5419 249 5336 23845;23846;23847;23848;23849;23850 15806;15807;15808;15809;15810 15806 5 MWDPHNDPNAQGDAFK Unmodified 1841.7791 0.77913155 807 P08621-3;P08621-2;P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 111.73 104.36 3 0.0033742 1 71332 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.009 37.08 3031000 0 722810 0 0 347280 1961000 5420 807 5337 23851;23852;23853 15811 15811 1 MYDLQYQGGHK Unmodified 1338.6027 0.60267073 687 O00257 CBX4 E3 SUMO-protein ligase CBX4 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 88.288 80.61 3 0.0032222 1 55500 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.102 66.356 11109000 613240 766350 1182100 1043600 2444100 5059200 5421 687 5338 23854;23855;23856;23857;23858;23859 15812 15812 1 MYEEHLKR Unmodified 1104.5386 0.53861391 581 G3V279;P84090 ERH Enhancer of rudimentary homolog yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 45.625 38.931 2 0.031673 1 31644 20150910_Q1_SA_NiHu_Masterprac_group13_C 95.815 65.497 1037400 0 334520 702930 0 0 0 5422 581 5339 23860;23861 15813 15813 1 MYGRNELIAR Unmodified 1221.6288 0.6288259 606;12;1429 H0Y3A6;H0YGS2;H0Y308;Q15561;Q15562;A4FUP2;H0YEJ9;P28347;H0YE88;Q99594 TEAD4;TEAD2;TEAD1;TEAD3 Transcriptional enhancer factor TEF-3;Transcriptional enhancer factor TEF-4;Transcriptional enhancer factor TEF-1;Transcriptional enhancer factor TEF-5 no no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 87.897 80.417 3 0.0031705 6 55009 20150910_Q1_SA_NiHu_Masterprac_group13_B 91.867 56.598 58047000 0 4024500 4446900 6183100 13776000 29616000 5423 606;12;1429 5340 23862;23863;23864;23865;23866 15814;15815;15816;15817;15818;15819 15814 6 MYLCLSQER Unmodified 1198.5475 0.54746404 1042 Q06330;D6R927;Q06330-5;Q06330-4;Q06330-6;Q06330-7;Q06330-3;Q06330-2;H0Y8R3 RBPJ Recombining binding protein suppressor of hairless yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 121.53 118.85 2 0.0064563 2 80554 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.867 58.489 6149800 0 2331700 0 0 0 3818100 5424 1042 5341 23867;23868 15820;15821 15820 2 MYLSNNPNSHTDNNAK Unmodified 1818.7955 0.79550989 797 P05549-5;Q5TAV5;P05549 TFAP2A Transcription factor AP-2-alpha yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 60.212 53.553 3 0.00023992 6 43943 20150910_Q1_SA_NiHu_Masterprac_group13_C 71.513 59.924 21906000 2698000 2964800 3679900 3539400 4845600 4177800 5425 797 5342 23869;23870;23871;23872;23873;23874 15822;15823;15824;15825;15826;15827 15823 6 MYSNVYYHITSK Unmodified 1504.7021 0.70205043 1399 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 114.57 105.42 3 0.031118 1 69542 20150910_Q1_SA_NiHu_Masterprac_group10_B 45.28 29.735 12804000 2252100 941340 1640900 2008500 1637000 4324200 5426 1399 5343 23875;23876;23877;23878;23879;23880 15828 15828 1 MYSYPARVPPPPPIAR Unmodified 1810.9552 0.95524542 68 G3V576;G3V4W0;B4DY08;G3V4C1;P07910-2;B2R603;G3V2Q1;P07910;P07910-3;G3V555;G3V5V7;G3V575;G8JL89;G3V2D6;P07910-4 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 132.02 122.27 3 1.8351E-37 4 84393 20150910_Q1_SA_NiHu_Masterprac_group10_B 115.12 101.95 40277000 8381200 14964000 0 0 2764700 14167000 5427 68 5344 23881;23882;23883;23884 15829;15830;15831;15832 15831 3 NAADPISGDFK Unmodified 1133.5353 0.53530267 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 108.15 98.222 2 0.013873 1 65425 20150910_Q1_SA_NiHu_Masterprac_group10_B 60.301 41.629 11023000 0 4321700 1159600 0 1060200 4481500 5428 919 5345 23885;23886;23887;23888 15833 15833 1 NAALAPTSWHQRGQNPGK Unmodified 1931.9714 0.97144084 668 O75128-6;H7C1N2;O75128-3;O75128;O75128-7;O75128-2;E7EQN2 COBL Protein cordon-bleu yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 75.649 73.567 3 0.005806 2 51049 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.156 30.337 2343100 0 617740 0 0 0 1725300 5429 668 5346 23889;23890 15834;15835 15834 2 NAAQFLLSTNDK Unmodified 1320.6674 0.66737948 1003 P63151;P63151-2 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 132.01 126.58 2 7.8004E-66 3 78971 20150910_Q1_SA_NiHu_Masterprac_group10_C 142.83 110.67 51658000 16574000 6839300 0 28245000 0 0 5430 1003 5347 23891;23892;23893 15836;15837;15838 15838 3 NAAQFLLSTNDKTIK Unmodified 1662.8941 0.89408495 1003 P63151;P63151-2 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 132.1 126.67 2 0 4 84792 20150910_Q1_SA_NiHu_Masterprac_group13_B 216.15 159.86 94422000 23239000 55392000 0 15791000 0 0 5431 1003 5348 23894;23895;23896 15839;15840;15841;15842 15840 4 NAAVCPYCSLR Unmodified 1309.5907 0.59072584 1607 Q9ULJ3-2;Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 102.25 94.138 2 0.014934 2 64238 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.198 48.102 4618300 494960 706530 633970 0 0 2782800 5432 1607 5349 23897;23898;23899;23900 15843;15844 15843 2 NADDSTKKPNAETTVASEIK Unmodified 2118.0441 0.044056244 1253 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 WAPAL Wings apart-like protein homolog yes no 0 0 2 By MS/MS By MS/MS By matching By matching By matching By MS/MS 3 2 2 2 2 89.115 79.947 3;4 0.002436 4 55386 20150910_Q1_SA_NiHu_Masterprac_group10_C 55.907 39.836 13909000 1909800 4330000 1754300 0 3059400 2855300 5433 1253 5350 23901;23902;23903;23904;23905;23906;23907;23908;23909;23910;23911 15845;15846;15847;15848 15848 3 NADLCIASGTK Unmodified 1148.5496 0.54957253 1042 Q06330;D6R927;Q06330-5;Q06330-4;Q06330-6;Q06330-7;Q06330-3;Q06330-2;D6RBQ8;D6RA45;D6RCM1 RBPJ Recombining binding protein suppressor of hairless yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 81.68 74.32 2 2.1348E-05 5 56577 20150910_Q1_SA_NiHu_Masterprac_group15_C 104.24 80.872 11778000 0 2489900 1937800 1285700 1669300 4395300 5434 1042 5351 23912;23913;23914;23915;23916 15849;15850;15851;15852;15853 15852 5 NADMSEEMQQDSVECATQALEK Unmodified 2513.0356 0.035618102 1004 P63167;F8VXI7;F8VXL2;F8VRV5 DYNLL1 Dynein light chain 1, cytoplasmic yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 133.31 132.71 3 0.011356 1 86344 20150910_Q1_SA_NiHu_Masterprac_group10_B 37.688 30.237 13638000 0 13638000 0 0 0 0 5435 1004 5352 23917 15854 15854 1 NAEFLTCNIPTSNASNNMVTTEK Unmodified 2555.1632 0.16320188 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 2 1 1 133.17 131.63 2;3 4.2861E-68 4 88550 20150910_Q1_SA_NiHu_Masterprac_group15_B 114.19 97.043 55833000 0 23928000 0 5181500 0 26724000 5436 352;968 5353 23918;23919;23920;23921 15855;15856;15857;15858 15856 4 NAEGEPVCNACGLYMK Unmodified 1811.7641 0.76407511 1363 Q92908-2;Q92908 GATA6 Transcription factor GATA-6 no no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 123.07 113.59 2 1.5403E-37 3 80748 20150910_Q1_SA_NiHu_Masterprac_group13_C 115.68 108.36 21104000 7477900 1353000 5629700 1288300 1010500 4344400 5437 1363 5354 23922;23923;23924;23925;23926;23927 15859;15860;15861 15859 3 NAEPDEQDFEK Unmodified 1320.547 0.54698957 1103 Q14241 TCEB3 Transcription elongation factor B polypeptide 3 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 73.486 67.821 2 0.0064311 1 47312 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.089 59.859 2251300 0 0 0 175420 680660 1395200 5438 1103 5355 23928;23929;23930 15862 15862 1 NAGETLLQR Unmodified 1000.5302 0.53015772 1237;1182 Q5H9F3-3;Q6W2J9;Q6W2J9-4;Q6W2J9-2;A6NE70;H7C2V9;H7C231;H7BZ37 BCORL1;BCOR BCL-6 corepressor-like protein 1;BCL-6 corepressor no no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 83.018 75.686 2 0.018028 2 52280 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.908 3.9464 4506700 466960 574980 612080 0 0 2852700 5439 1182;1237 5356 23931;23932;23933;23934 15863;15864 15864 2 NAGVEGSLIVEK Unmodified 1214.6507 0.65066678 820 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 109.75 102.54 2 0.034044 1 69818 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.282 23.641 8900000 1606000 1539600 1842100 862350 0 3050100 5440 820 5357 23935;23936;23937;23938;23939 15865 15865 1 NAHSATTWSGQYVGGAEAR Unmodified 1961.898 0.89800113 311 CON__Streptavidin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 100.25 92.092 3 0.0011215 6 62432 20150910_Q1_SA_NiHu_Masterprac_group10_C 56.081 45.853 14346000 3325000 3025100 2219000 1564800 2184000 2027800 + 5441 311 5358 23940;23941;23942;23943;23944;23945 15866;15867;15868;15869;15870;15871 15871 6 NAIANASTLAEVER Unmodified 1457.7474 0.74742071 814 P09661;H0YLR3;H0YMA0 SNRPA1 U2 small nuclear ribonucleoprotein A' yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 131.29 120.96 2 6.4572E-70 2 77713 20150910_Q1_SA_NiHu_Masterprac_group10_C 135.14 102.61 61350000 21399000 0 0 0 0 39951000 5442 814 5359 23946;23947 15872;15873 15873 2 NAIKVNNVNGNQVGHLK Unmodified 1817.986 0.98602828 1107 Q14527;E7ESN4;F5H3D6 HLTF Helicase-like transcription factor yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 2 1 2 84.709 78.086 3;4 1.6949E-44 6 60687 20150910_Q1_SA_NiHu_Masterprac_group13_C 114.21 90.308 23167000 340590 7473000 5649900 1563900 402040 7737300 5443 1107 5360 23948;23949;23950;23951;23952;23953;23954;23955;23956;23957 15874;15875;15876;15877;15878;15879 15875 6 NANGDPVCNACGLYYK Unmodified 1814.7716 0.77160333 869 P23769;P23769-2;P23771;P23771-2 GATA2;GATA3 Endothelial transcription factor GATA-2;Trans-acting T-cell-specific transcription factor GATA-3 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 120.03 112.73 2 8.3578E-80 6 80259 20150910_Q1_SA_NiHu_Masterprac_group13_C 134.37 122.33 27617000 5224100 3229200 7530700 1683400 0 9949200 5444 869 5361 23958;23959;23960;23961;23962;23963 15880;15881;15882;15883;15884;15885 15882 6 NANGGYVCNACGLYQK Unmodified 1787.7719 0.77193768 1594 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YAV4 TRPS1 Zinc finger transcription factor Trps1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 109.7 99.224 2 0.0054532 1 72841 20150910_Q1_SA_NiHu_Masterprac_group13_C 49.188 43.808 2802500 0 0 1161900 0 0 1640600 5445 1594 5362 23964;23965 15886 15886 1 NANTFISPQQR Unmodified 1274.6367 0.63674805 806 P08493 MGP Matrix Gla protein yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 87.143 80.124 2 2.9998E-05 2 54972 20150910_Q1_SA_NiHu_Masterprac_group10_B 103.08 77.787 9455800 0 1880700 309320 0 0 7265800 5446 806 5363 23966;23967;23968 15887;15888 15888 2 NAPQISDGSEVVVVK Unmodified 1540.8097 0.80968662 1302 Q8N5C6 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 124.13 114.64 2 1.3521E-86 5 76265 20150910_Q1_SA_NiHu_Masterprac_group10_C 138.28 107.28 112230000 38311000 13582000 35836000 4987200 4166900 15351000 5447 1302 5364 23969;23970;23971;23972;23973;23974 15889;15890;15891;15892;15893 15893 5 NAPYFPCDK Unmodified 1110.4804 0.48043033 911 P41182-2;P41182 BCL6 B-cell lymphoma 6 protein yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 106.33 89.483 2 0.032422 1 65909 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.426 43.64 2447800 0 0 0 0 2447800 0 5448 911 5365 23975 15894 15894 1 NAQAHRSADEANVLREK Unmodified 1907.9562 0.95618471 1178 Q5C9Z4 NOM1 Nucleolar MIF4G domain-containing protein 1 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 54.996 46.039 4 0.034811 1 33085 20150910_Q1_SA_NiHu_Masterprac_group15_B 35.832 23.515 2560200 0 0 594630 0 757050 1208500 5449 1178 5366 23976;23977;23978 15895 15895 1 NAQGIINPIEAK Unmodified 1266.6932 0.6932003 611 H0Y4U8;Q9UBB9 TFIP11 Tuftelin-interacting protein 11 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 115.88 113.6 2 0.0037585 2 77429 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.997 40.667 2049500 0 0 0 451370 0 1598200 5450 611 5367 23979;23980 15896;15897 15897 2 NASEDNHSENTLYSNDNGSNLQREATVISEQK Unmodified 3563.5997 0.59965344 1322 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 130.4 129.79 4 0.018058 1 83293 20150910_Q1_SA_NiHu_Masterprac_group10_B 25.265 18.283 2907900 0 2907900 0 0 0 0 5451 1322 5368 23981 15898 15898 1 NASMNTQHGTATEVAVETTTPK Unmodified 2287.075 0.075038797 1596 Q9UIG0-2;Q9UIG0 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 97.493 88.017 3 0.022206 1 60281 20150910_Q1_SA_NiHu_Masterprac_group10_C 33.79 20.494 3050500 884780 292710 0 0 1873000 0 5452 1596 5369 23982;23983;23984 15899 15899 1 NASPEDVEYYNCQQELTDDLHK Unmodified 2667.1395 0.13948955 695 O14646-2;O14646 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.8 131.19 3 0.0035474 1 84645 20150910_Q1_SA_NiHu_Masterprac_group10_B 45.992 41.794 4612400 0 4612400 0 0 0 0 5453 695 5370 23985 15900 15900 1 NASTVVVSDKYNLKPIPLK Unmodified 2085.1834 0.18339068 1414 Q96QC0;F5H5K4 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes no 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 131.73 123.93 3 1.769E-144 4 84449 20150910_Q1_SA_NiHu_Masterprac_group13_B 144.97 136.69 57091000 16858000 10569000 0 16015000 3578100 10070000 5454 1414 5371 23986;23987;23988;23989;23990 15901;15902;15903;15904 15901 4 NAVALSASPQLK Unmodified 1197.6717 0.67173657 1351 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 108.44 100.46 2 0.0028937 2 68317 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.731 48.499 12891000 0 2626000 1757200 617240 1766000 6124800 5455 1351 5372 23991;23992;23993;23994;23995 15905;15906 15905 2 NAVIRDLGK Unmodified 984.57163 0.5716286 481 Q86TC9-2;F5H7I9;Q86TC9;F5GWA6 MYPN Myopalladin yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 63.675 63.097 2 0.031064 1 44038 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.261 36.259 1488300 0 0 0 463030 0 1025300 5456 481 5373 23996;23997 15907 15907 1 NAVPITPTLNR Unmodified 1194.6721 0.67207093 289 CON__P02663 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 119.2 109.77 2 0.0041726 4 77387 20150910_Q1_SA_NiHu_Masterprac_group15_C 78.342 44.466 101550000 16579000 12510000 21145000 16265000 16342000 18706000 + 5457 289 5374 23998;23999;24000;24001;24002;24003 15908;15909;15910;15911 15909 4 NCAILIENDQSISR Unmodified 1631.7937 0.79371898 736 O60934;F5H3R2;E5RGU1;E2QRP0 NBN Nibrin yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 126.4 121.54 2 0.026729 1 82502 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.267 31.819 619940 0 0 0 0 0 619940 5458 736 5375 24004 15912 15912 0 NCEPMIGLVPILK Oxidation (M) 1498.7888 0.78875694 1636 Q9Y2R9 MRPS7 28S ribosomal protein S7, mitochondrial yes yes 0 1 0 By matching By MS/MS By matching By matching By matching By matching 1 1 74.155 72.072 3 0.027284 1 50038 20150910_Q1_SA_NiHu_Masterprac_group10_B 48.115 14.798 5428600 0 1645100 0 0 0 3783500 5459 1636 5376 24005;24006 15913 15913 182 0 NCFALLTTPEMKTSDTQIK Unmodified 2197.0759 0.07589042 1200 Q5THJ4-2;Q5THJ4 VPS13D Vacuolar protein sorting-associated protein 13D yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 134.89 116.89 2 0.0031908 1 86077 20150910_Q1_SA_NiHu_Masterprac_group13_C 58.246 38.073 17675000 0 0 17675000 0 0 0 5460 1200 5377 24007 15914 15914 1 NCLTNFHGMDLTRDK Unmodified 1820.8298 0.82978691 321 D6RAT0;P61247;D6RG13;D6RB09;F5H4F9;E9PFI5;D6RED7;D6RAS7;H0Y8L7 RPS3A 40S ribosomal protein S3a yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 129.59 118.24 4 0.0088164 2 79797 20150910_Q1_SA_NiHu_Masterprac_group15_C 48.405 32.165 8132400 0 0 0 0 6277200 1855200 5461 321 5378 24008;24009 15915;15916 15916 2 NCPTNGDKNFESGPR Unmodified 1691.7322 0.73218135 1255 Q7Z6E9;Q7Z6E9-2;Q7Z6E9-4;H3BSK8;H3BUN0 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 51.083 44.617 3 0.0029804 2 33168 20150910_Q1_SA_NiHu_Masterprac_group10_C 58.079 58.079 1045200 1045200 0 0 0 0 0 5462 1255 5379 24010 15917;15918 15918 2 NCQHANAERPTVAR Unmodified 1622.7696 0.76956991 1654 Q9Y5J1;B2RAX6 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 35.658 30.243 3 0.0079079 2 20718 20150910_Q1_SA_NiHu_Masterprac_group10_B 52.79 52.79 1636700 256910 673740 706040 0 0 0 5463 1654 5380 24011;24012;24013 15919;15920 15920 2 NCTAGAVYTYHEK Unmodified 1512.6667 0.66672755 1642 Q9Y314 NOSIP Nitric oxide synthase-interacting protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 2 2 1 1 2 70.412 63.298 2;3 0.0031029 4 51206 20150910_Q1_SA_NiHu_Masterprac_group13_C 63.185 63.185 9077700 947050 1422000 1538200 791750 1380700 2998000 5464 1642 5381 24014;24015;24016;24017;24018;24019;24020;24021;24022 15921;15922;15923;15924 15921 4 NCTYTQVQTR Unmodified 1269.5772 0.57718426 864 P23193-2;P23193 TCEA1 Transcription elongation factor A protein 1 no no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 54.34 51.507 2 0.01406 1 36685 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.786 49.515 3064100 579300 775130 0 266810 0 1442800 5465 864 5382 24023;24024;24025;24026 15925 15925 1 NCVVELNFGQK Unmodified 1306.634 0.63397086 640 H3BQZ7;Q1KMD3 hCG_2044799;HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 132.18 131.88 2 0.0049662 1 85022 20150910_Q1_SA_NiHu_Masterprac_group10_B 108.31 89.981 13830000 0 9937900 0 3892000 0 0 5466 640 5383 24027;24028 15926 15926 0 NDFTEEEEAQVR Unmodified 1465.6321 0.63211618 344 P63208;E5RJR5 SKP1 S-phase kinase-associated protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 92.735 90.578 2 6.5671E-10 1 61986 20150910_Q1_SA_NiHu_Masterprac_group15_B 107.09 89.954 0 0 0 0 0 0 0 5467 344 5384 24029 15927 15927 1 NDIHEDNLLECPPEELAR Unmodified 2162.9902 0.99024653 1107 Q14527;Q14527-2;H7C5K0 HLTF Helicase-like transcription factor yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.68 132.08 3 0.0012701 1 85651 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.372 43.77 18157000 0 18157000 0 0 0 0 5468 1107 5385 24030 15928 15928 1 NDILEEPVDSDSTK Unmodified 1560.7155 0.71551146 1492 Q9H582-2;Q9H582;F5GWV4 ZNF644 Zinc finger protein 644 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 109.54 103.23 2 0.027809 1 68254 20150910_Q1_SA_NiHu_Masterprac_group10_B 52.599 26.617 2176800 785130 570710 0 0 0 820980 5469 1492 5386 24031;24032;24033 15929 15929 0 NDILEEPVDSDSTKTLTK Unmodified 2003.9899 0.98989541 1492 Q9H582-2;Q9H582;F5GWV4 ZNF644 Zinc finger protein 644 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 129.28 115.23 3 4.0579E-91 4 76691 20150910_Q1_SA_NiHu_Masterprac_group10_C 133.52 115.29 47582000 28945000 0 11854000 0 1384800 5397400 5470 1492 5387 24034;24035;24036;24037 15930;15931;15932;15933 15933 4 NDLAVVDVR Unmodified 999.53491 0.53490874 397 E7EX81;P19338 NCL Nucleolin yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 112.51 105.21 2 0.034186 1 69561 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.633 10.871 5546300 1196400 1249000 0 415070 796070 1889700 5471 397 5388 24038;24039;24040;24041;24042 15934 15934 1 NDLEMGIK Unmodified 918.44807 0.44806757 1389 Q96GM8;B4DEM6 TOE1 Target of EGR1 protein 1 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 2 97.039 88.717 1;2 0.0043421 5 60290 20150910_Q1_SA_NiHu_Masterprac_group10_B 99.139 43.608 35040000 951480 5005800 3058000 974190 7172700 17878000 5472 1389 5389 24043;24044;24045;24046;24047;24048;24049;24050 15935;15936;15937;15938;15939 15939 5 NDLQDTEISPR Unmodified 1286.6103 0.61025853 1542 Q9NS91 RAD18 E3 ubiquitin-protein ligase RAD18 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 84.371 82.815 2 0.024776 1 56836 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.088 52.343 396520 0 0 0 0 0 396520 5473 1542 5390 24051 15940 15940 0 NDMDEPPSGDFGGDEEK Unmodified 1837.6949 0.69485237 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 102.49 95.167 2 0.0011611 2 65402 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.524 60.834 9611900 0 1641800 1616100 0 0 6354000 5474 486 5391 24052;24053;24054 15941;15942 15942 1 NDPEITINVPQSSK Unmodified 1540.7733 0.77330111 1081 Q13416 ORC2 Origin recognition complex subunit 2 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 125.96 116.34 2 0.00021047 3 76773 20150910_Q1_SA_NiHu_Masterprac_group10_C 88.768 67.962 12524000 2972600 0 5395400 682350 0 3473200 5475 1081 5392 24055;24056;24057;24058 15943;15944;15945 15945 2 NDPFVVDCSDK Unmodified 1294.55 0.54996646 694 O14497-2;O14497;Q96SM7;H0Y488;O14497-3 ARID1A AT-rich interactive domain-containing protein 1A yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 107.42 97.298 2 0.0069874 1 71711 20150910_Q1_SA_NiHu_Masterprac_group13_C 69.261 58.336 5211900 2178200 0 1779100 1254600 0 0 5476 694 5393 24059;24060;24061 15946 15946 1 NDQCYDDIRVSR Unmodified 1539.6736 0.67360384 33 Q9ULV4;A7MAP0;F8W1H8;F8VUX3;F8VSA4;F8VRE9;F8VTT6;F8VVB7 CORO1C Coronin-1C;Coronin yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 88.752 79.477 3 0.024679 1 54674 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.108 30.821 4856900 0 951330 1393000 0 268880 2243700 5477 33 5394 24062;24063;24064;24065 15947 15947 1 NDQDTWDYTNPNLSGQGDPGSNPNK Unmodified 2733.1539 0.15389406 838 P14866;A6NIT8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 131.31 117.22 2;3 2.6848E-51 10 77635 20150910_Q1_SA_NiHu_Masterprac_group10_C 104.7 102.72 103170000 26116000 0 39363000 0 6737100 30958000 5478 838 5395 24066;24067;24068;24069;24070;24071;24072;24073 15948;15949;15950;15951;15952;15953;15954;15955;15956;15957 15956 9 NDQDTWDYTNPNLSGQGDPGSNPNKR Unmodified 2889.255 0.25500509 838 P14866;A6NIT8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 125.32 113.79 3 2.2533E-21 5 75877 20150910_Q1_SA_NiHu_Masterprac_group10_C 85.062 72.846 10176000 4405100 2521000 3250000 0 0 0 5479 838 5396 24074;24075;24076 15958;15959;15960;15961;15962 15961 5 NEAFSSEDSLGENKTISPK Unmodified 2051.9647 0.96474329 1176 Q56NI9;H0YB88 ESCO2 N-acetyltransferase ESCO2 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 109.82 100.22 3 0.0010305 1 73434 20150910_Q1_SA_NiHu_Masterprac_group13_C 60.764 60.764 9960400 0 0 2707300 3073200 1447300 2732700 5480 1176 5397 24077;24078;24079;24080 15963 15963 1 NECISEDMGDEDK Unmodified 1540.5658 0.56575246 535 Q96RL1;F8VQY2;Q96RL1-3;F2Z2T8 UIMC1 BRCA1-A complex subunit RAP80 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 79.873 72.23 2 1.081E-59 7 56802 20150910_Q1_SA_NiHu_Masterprac_group13_C 131.32 131.32 17932000 4263600 2190100 3353100 1737400 1852800 4534800 5481 535 5398 24081;24082;24083;24084;24085;24086;24087 15964;15965;15966;15967;15968;15969;15970 15965 7 NECISEDMGDEDKEER Unmodified 1954.752 0.75204968 535 Q96RL1;F8VQY2;Q96RL1-3;F2Z2T8 UIMC1 BRCA1-A complex subunit RAP80 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 76.832 70.883 3 0.0095787 1 49217 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.722 41.221 1463500 0 0 464880 444650 0 554010 5482 535 5399 24088;24089;24090 15971 15971 1 NEDLLEVGSRPGPASQLPR Unmodified 2034.0494 0.049416394 255 C9JJU9;Q96P11-2;G3V0G9;Q96P11;Q96P11-4;Q96P11-3 NSUN5 Putative methyltransferase NSUN5 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 132.92 117.23 3 0.00018031 1 78650 20150910_Q1_SA_NiHu_Masterprac_group10_C 81.713 65.05 5396100 5396100 0 0 0 0 0 5483 255 5400 24091 15972 15972 1 NEDLTDELSLNK Unmodified 1389.6624 0.66235368 891 P33981-2;P33981;D6RFY1;D6RF82;D6REX1;D6RIC6 TTK Dual specificity protein kinase TTK yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.47 130.86 2 1.4239E-26 1 84334 20150910_Q1_SA_NiHu_Masterprac_group10_B 121.21 83.959 3225500 0 3225500 0 0 0 0 5484 891 5401 24092 15973 15973 1 NEDVCSCSTDTSEVPRWPENK Unmodified 2509.0486 0.04856605 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 121.1 114.02 3 0.00039893 2 77660 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.719 48.046 4797100 1858200 986310 0 0 0 1952600 5485 531 5402 24093;24094;24095 15974;15975 15975 2 NEEAADEVFK Unmodified 1150.5142 0.51423288 666 H7C1H8;P00519;P00519-2 ABL1 Tyrosine-protein kinase ABL1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 89.953 84.262 2 0.003334 1 57267 20150910_Q1_SA_NiHu_Masterprac_group10_B 89.171 20.514 1047900 299470 748410 0 0 0 0 5486 666 5403 24096;24097 15976 15976 1 NEEPSEEEIDAPKPK Unmodified 1710.7948 0.79482442 1534 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 80.392 72.847 2;3 3.2194E-124 9 50596 20150910_Q1_SA_NiHu_Masterprac_group10_B 150.39 105.46 90952000 25175000 13808000 9688700 8491300 22567000 11222000 5487 1534 5404 24098;24099;24100;24101;24102;24103;24104;24105;24106;24107;24108;24109 15977;15978;15979;15980;15981;15982;15983;15984;15985 15983 9 NEESGAVVVPGTR Unmodified 1313.6575 0.65754307 1624 Q9UQ84-4;Q9UQ84 EXO1 Exonuclease 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 88.91 81.215 2 0.0022319 2 55667 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.261 44.247 9892700 491570 1649500 1302300 494190 1384300 4570900 5488 1624 5405 24110;24111;24112;24113;24114;24115 15986;15987 15987 2 NEGVNWLR Unmodified 986.49338 0.49337828 541 F8VUA2;Q9HD42;F8VVT7 CHMP1A Charged multivesicular body protein 1a yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 122.77 111.29 2 4.337E-05 6 80213 20150910_Q1_SA_NiHu_Masterprac_group13_C 116.37 24.32 54009000 2632200 5903500 9023600 0 2192100 34258000 5489 541 5406 24116;24117;24118;24119;24120;24121 15988;15989;15990;15991;15992;15993 15989 6 NELEIPGQYDGR Unmodified 1389.6525 0.6524577 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 120.02 119.42 2 0.029707 1 76838 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.227 38.45 421790 0 421790 0 0 0 0 5490 1012 5407 24122 15994 15994 0 NELIEAFK Unmodified 962.5073 0.50729701 114 B4DPR4;C9J494;Q9H000 MKRN2 Probable E3 ubiquitin-protein ligase makorin-2 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 132.33 120.92 2 0.01499 2 86970 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.67 52.582 6358500 0 0 0 0 1906800 4451700 5491 114 5408 24123;24124 15995;15996 15995 2 NELLESEMKNLK Oxidation (M) 1462.7337 0.73374448 355 Q14789;E7EP74 GOLGB1 Golgin subfamily B member 1 yes no 0 1 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 118.01 105.93 2 0.022506 1 72578 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.28 49.28 3375900 941430 0 923040 0 0 1511500 5492 355 5409 24125;24126;24127 15997 15997 38 0 NELQEPCDSPKVK Unmodified 1542.7348 0.73480712 758 O94913 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 2 1 74.682 64.531 2;3 0.0019706 2 50591 20150910_Q1_SA_NiHu_Masterprac_group15_C 84.365 39.939 3101300 445950 0 0 0 2220200 435160 5493 758 5410 24128;24129;24130;24131 15998;15999 15998 2 NENSEVDTSAGSGSAPSVLHQR Unmodified 2241.0258 0.025780418 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 96.241 86.766 3 0.00027905 2 59319 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.882 44.916 5986800 831760 770650 502680 0 1201500 2680200 5494 1325 5411 24132;24133;24134;24135;24136 16000;16001 16000 2 NENSNDPELKKLK Unmodified 1527.7893 0.78928553 1287 Q8IXB1;Q8IXB1-2;F8W884 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 52.059 46.067 3 8.1107E-24 4 33241 20150910_Q1_SA_NiHu_Masterprac_group15_B 117.2 51.196 11716000 872670 1899800 2144400 1051700 1316200 4431200 5495 1287 5412 24137;24138;24139;24140;24141;24142 16002;16003;16004;16005 16003 4 NENTEGSPQEDGVELEGLKQR Unmodified 2328.083 0.082960946 655 P11388;H7BXX8;P11388-2;P11388-3;P11388-4;C9J5P2;H7BXH5 TOP2A DNA topoisomerase 2-alpha yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 2 1 115.2 106.05 3 4.1164E-19 3 75020 20150910_Q1_SA_NiHu_Masterprac_group15_C 92.39 58.734 21607000 2283900 4050300 3213600 1114300 2551600 8393000 5496 655 5413 24143;24144;24145;24146;24147;24148;24149 16006;16007;16008 16007 3 NENTEGSPQEDGVELEGLKQRLEK Unmodified 2698.3046 0.30458104 655 P11388;H7BXX8;P11388-2;P11388-3;P11388-4;C9J5P2;H7BXH5 TOP2A DNA topoisomerase 2-alpha yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 131.61 131.61 4 0.0027483 1 84614 20150910_Q1_SA_NiHu_Masterprac_group13_B 48.706 48.706 12162000 0 0 0 12162000 0 0 5497 655 5414 24150 16009 16009 1 NESLTEHPRSTELPK Unmodified 1736.8693 0.86932676 547 Q99590-2;F8VXG7;Q99590;F8W028 SCAF11 Protein SCAF11 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 1 77.679 69.122 3;4 6.6989E-05 8 53556 20150910_Q1_SA_NiHu_Masterprac_group15_C 88.706 50.369 148050000 11376000 19969000 27201000 18735000 39454000 31317000 5498 547 5415 24151;24152;24153;24154;24155;24156;24157;24158;24159;24160 16010;16011;16012;16013;16014;16015;16016;16017 16014 8 NESLTEHPRSTELPKTHIEQIQK Unmodified 2714.3988 0.3987562 547 Q99590-2;F8VXG7;Q99590;F8W028 SCAF11 Protein SCAF11 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 98.401 91.994 5 0.0065535 1 61978 20150910_Q1_SA_NiHu_Masterprac_group13_B 54.047 54.047 27803000 7697500 2497100 8277800 7613500 0 1716800 5499 547 5416 24161;24162;24163;24164;24165 16018 16018 1 NETYNSHPLLVK Unmodified 1413.7252 0.72522871 1330 Q8NI27 THOC2 THO complex subunit 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 94.163 85.013 2 0.0054132 1 58255 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.966 37.983 1390400 0 0 0 0 336880 1053500 5500 1330 5417 24166;24167 16019 16019 1 NEVNGTSEDIK Unmodified 1204.5572 0.55716033 766 O95232;B4DJ96;H0YBV7;H0YAR4 LUC7L3 Luc7-like protein 3 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 50.225 45.623 2 0.0033399 2 36987 20150910_Q1_SA_NiHu_Masterprac_group13_C 83.137 45.537 2126900 156490 701680 581940 75649 0 611180 5501 766 5418 24168;24169;24170;24171;24172 16020;16021 16020 2 NEYSIPKHINPVAASLIQK Unmodified 2121.1582 0.15823856 962 P53350;B4E083;I3L309;I3L2H5 PLK1 Serine/threonine-protein kinase PLK1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 123.37 114.37 3 0.00027644 1 83371 20150910_Q1_SA_NiHu_Masterprac_group13_C 80.859 63.571 15463000 0 0 15125000 338090 0 0 5502 962 5419 24173;24174 16022 16022 1 NFAELAR Unmodified 819.4239 0.42390173 1646 Q9Y3C6 PPIL1 Peptidyl-prolyl cis-trans isomerase-like 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 93.837 85.958 2 0.040642 1 58927 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.469 33.517 11440000 1439800 1777000 1714300 922310 1847700 3738900 5503 1646 5420 24175;24176;24177;24178;24179;24180 16023 16023 1 NFCGPSVTVDASAATK Unmodified 1623.7563 0.75627084 1415 Q96QE3 ATAD5 ATPase family AAA domain-containing protein 5 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 117.66 114.92 2 0.0029569 1 78107 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.964 23.083 1958800 0 742330 0 0 0 1216500 5504 1415 5421 24181;24182 16024 16024 1 NFDDATMK Unmodified 940.39603 0.396032 80 E7ENR3;B4DDF4;Q99439;B4DUT8;H3BTZ5;H3BVI6 CNN2 Calponin-2 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 73.483 58.295 2 0.029084 1 47520 20150910_Q1_SA_NiHu_Masterprac_group13_C 71.692 20.989 832930 0 0 832930 0 0 0 5505 80 5422 24183 16025 16025 1 NFDQEGLVEHCK Unmodified 1474.6511 0.65107749 269 Q9Y508-2;C9JU49;Q9Y508 RNF114 RING finger protein 114 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 90.94 83.984 3 0.0017901 1 57090 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.788 58.724 4310000 608380 1097800 0 768310 1835500 0 5506 269 5423 24184;24185;24186;24187 16026 16026 1 NFEALNAR Unmodified 933.46683 0.46682918 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 87.976 80.991 2 0.0061452 2 55505 20150910_Q1_SA_NiHu_Masterprac_group15_B 107.29 62.918 11630000 0 790520 941800 0 0 9897600 5507 486 5424 24188;24189;24190 16027;16028 16028 2 NFEDVAFDEK Unmodified 1212.5299 0.52988294 356 I3L2P8;F5H8J2;H7BZ94;E7EPA8;P07237;H0Y3Z3;B4DUA5 P4HB Protein disulfide-isomerase yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 127.61 122.3 2 0.0094909 3 77897 20150910_Q1_SA_NiHu_Masterprac_group10_C 75.788 26.322 28401000 15165000 4073000 0 1676600 0 7486600 5508 356 5425 24191;24192;24193;24194 16029;16030;16031 16031 3 NFGIGQDIQPK Unmodified 1215.6248 0.62478638 991 P62424;Q5T8U3 RPL7A 60S ribosomal protein L7a yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 121.36 116.07 2 0.0050636 3 76315 20150910_Q1_SA_NiHu_Masterprac_group10_C 73.9 40.861 24911000 15649000 2839900 0 2047700 0 4375100 5509 991 5426 24195;24196;24197;24198 16032;16033;16034 16034 3 NFGPKGFGYGQGAGALVHAQ Unmodified 1974.97 0.97004386 1152 Q16527;F8VW96 CSRP2 Cysteine and glycine-rich protein 2 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 132.38 130.52 3 8.1638E-101 4 85308 20150910_Q1_SA_NiHu_Masterprac_group13_B 134.08 116.26 141610000 0 59609000 0 40404000 0 41595000 5510 1152 5427 24199;24200;24201 16035;16036;16037;16038 16035 4 NFGSYVTHETK Unmodified 1281.599 0.59896556 1004 P63167;Q96FJ2 DYNLL1;DYNLL2 Dynein light chain 1, cytoplasmic;Dynein light chain 2, cytoplasmic yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 2 2 2 82.482 75.657 2;3 0.0037957 2 52249 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.332 76.332 17561000 0 127210 794680 1259900 3134200 12245000 5511 1004 5428 24202;24203;24204;24205;24206;24207;24208;24209 16039;16040 16040 2 NFIHRDVKPDNFLMGLGK Oxidation (M) 2116.0888 0.088778788 932;939 P49674;B0QY35;B0QY34;B0QY36;H0Y645;P48730-2;B4DIJ9;P48730;Q59FJ7;H7BYT1 CSNK1E;CSNK1D Casein kinase I isoform epsilon;Casein kinase I isoform delta no no 0 1 2 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 132.24 123.36 4 0.0051704 2 85216 20150910_Q1_SA_NiHu_Masterprac_group13_B 77.13 54.296 18857000 0 0 0 7431100 11426000 0 5512 939;932 5429 24210;24211 16041;16042 16041 110 2 NFIHRDVKPDNFLMGLGK Unmodified 2100.0939 0.093864166 932;939 P49674;B0QY35;B0QY34;B0QY36;H0Y645;P48730-2;B4DIJ9;P48730;Q59FJ7;H7BYT1 CSNK1E;CSNK1D Casein kinase I isoform epsilon;Casein kinase I isoform delta no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 133.33 128.37 4 3.0417E-08 1 88418 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.932 61.959 425100000 0 0 0 0 0 425100000 5513 939;932 5429 24212 16043 16043 1 NFILDQTNVSAAAQR Unmodified 1646.8376 0.8376327 1022;1023 Q00839;B3KX72;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 133.03 128.06 2 0.0028575 1 88115 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.246 33.733 14938000 0 0 0 0 0 14938000 5514 1022;1023 5430 24213 16044 16044 1 NFILDQTNVSAAAQRRK Unmodified 1931.0337 0.03370675 1022;1023 Q00839;B3KX72;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 119.16 112.41 4 0.0043681 1 74489 20150910_Q1_SA_NiHu_Masterprac_group10_C 47.301 47.301 2889800 1151000 0 0 951990 0 786810 5515 1022;1023 5431 24214;24215;24216 16045 16045 1 NFPNEFAK Unmodified 965.46068 0.46068117 544 F8VVL1;O43583 DENR Density-regulated protein yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 2 2 106.69 97.442 2 0.010569 4 71850 20150910_Q1_SA_NiHu_Masterprac_group13_C 91.9 52.647 69225000 13142000 4817100 5895700 5829200 17494000 22047000 5516 544 5432 24217;24218;24219;24220;24221;24222;24223;24224;24225 16046;16047;16048;16049 16047 4 NFQEEQINTR Unmodified 1277.6 0.60002819 1287 Q8IXB1;Q8IXB1-2;F8W884 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 80.605 73.06 2 5.5768E-15 5 50597 20150910_Q1_SA_NiHu_Masterprac_group15_B 119.34 84.562 6622100 628340 1875600 584390 972490 989420 1571900 5517 1287 5433 24226;24227;24228;24229;24230;24231 16050;16051;16052;16053;16054 16052 5 NFQEEQINTRDAK Unmodified 1591.759 0.75904803 1287 Q8IXB1;Q8IXB1-2;F8W884 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 74.77 66.207 3 0.002275 5 47051 20150910_Q1_SA_NiHu_Masterprac_group10_C 71.268 45.94 15881000 4228300 3829600 3292100 2154500 2376900 0 5518 1287 5434 24232;24233;24234;24235;24236;24237 16055;16056;16057;16058;16059 16058 5 NFRVTAYK Unmodified 997.53451 0.53451481 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 77.83 68.876 2 1.7502E-15 2 53494 20150910_Q1_SA_NiHu_Masterprac_group15_C 128.38 72.125 33581000 3408700 4335100 7718900 0 11982000 6136500 5519 1639 5435 24238;24239;24240;24241;24242 16060;16061 16060 2 NFRVTAYKAVQEK Unmodified 1552.8362 0.83617614 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 91.503 82.58 3 1.1844E-08 2 56047 20150910_Q1_SA_NiHu_Masterprac_group10_C 103.11 71.387 48878000 22843000 2075600 11973000 10313000 1673700 0 5520 1639 5436 24243;24244;24245;24246;24247 16062;16063 16063 2 NFSEVFQK Unmodified 997.4869 0.48689592 1625 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 116.21 107.07 2 0.0088122 1 75803 20150910_Q1_SA_NiHu_Masterprac_group15_C 93.162 57.725 7272500 0 1354200 1017800 1165600 3734900 0 5521 1625 5437 24248;24249;24250;24251 16064 16064 1 NFSTVDIQK Unmodified 1050.5346 0.53457439 162 B4E2Z2;P43246;E9PHA6;B4DL39;B4DSB9 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 98.582 90.553 2 0.00098892 8 67900 20150910_Q1_SA_NiHu_Masterprac_group13_C 108.57 50.136 111100000 5220400 17814000 18290000 14332000 18688000 36757000 5522 162 5438 24252;24253;24254;24255;24256;24257 16065;16066;16067;16068;16069;16070;16071;16072 16067 8 NFSTVDIQKNGVKFTNSK Unmodified 2026.0484 0.048353761 162 B4E2Z2;P43246;E9PHA6;B4DL39;B4DSB9 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 130.5 114.81 3 3.6549E-07 1 76098 20150910_Q1_SA_NiHu_Masterprac_group10_C 82.942 48.457 3984700 3984700 0 0 0 0 0 5523 162 5439 24258 16073 16073 0 NFVCEHCFGAFR Unmodified 1542.6496 0.6496377 1320 Q8NDX6 ZNF740 Zinc finger protein 740 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 131.6 121.69 2;3 4.2814E-27 12 83628 20150910_Q1_SA_NiHu_Masterprac_group10_B 123.62 64.354 388170000 46251000 44420000 55568000 32779000 20802000 188350000 5524 1320 5440 24259;24260;24261;24262;24263;24264;24265;24266;24267;24268;24269 16074;16075;16076;16077;16078;16079;16080;16081;16082;16083;16084;16085 16082 12 NFVCEHCFGAFRSSYHLK Unmodified 2258.015 0.014961918 1320 Q8NDX6 ZNF740 Zinc finger protein 740 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 131.11 119.2 4 0.01418 2 83836 20150910_Q1_SA_NiHu_Masterprac_group13_B 40.547 17.52 69051000 0 0 26762000 38920000 3368800 0 5525 1320 5441 24270;24271;24272 16086;16087 16086 2 NFWSVTHPAK Unmodified 1185.5931 0.59309232 1576 Q9P275;Q9P275-2;E9PEW0 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 110.38 102.4 2 0.03377 1 69766 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.806 17.569 12355000 0 1303100 1701100 2413900 1914200 5022600 5526 1576 5442 24273;24274;24275;24276;24277 16088 16088 1 NFYQEHPDLAR Unmodified 1388.6473 0.64731274 853 P17844;E7ETL9 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 2 3 2 99.669 91.497 2;3 3.1437E-55 10 66937 20150910_Q1_SA_NiHu_Masterprac_group15_C 140.24 102.88 163100000 6618100 29766000 26028000 14216000 30759000 55712000 5527 853 5443 24278;24279;24280;24281;24282;24283;24284;24285;24286;24287;24288;24289;24290 16089;16090;16091;16092;16093;16094;16095;16096;16097;16098 16095 9 NFYQEHPDLARR Unmodified 1544.7484 0.74842377 853 P17844;E7ETL9 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 89.357 81.251 2;3 0.00097903 8 62421 20150910_Q1_SA_NiHu_Masterprac_group13_C 85.355 63.58 111850000 7061300 12978000 16261000 8504600 23426000 43619000 5528 853 5444 24291;24292;24293;24294;24295;24296;24297;24298;24299;24300 16099;16100;16101;16102;16103;16104;16105;16106 16100 8 NFYVEHPEVAR Unmodified 1359.6571 0.65714914 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 3 4 3 103.24 95.021 2;3 6.5588E-55 9 63385 20150910_Q1_SA_NiHu_Masterprac_group10_B 137.4 137.4 512390000 69258000 73484000 51151000 35346000 90687000 192460000 5529 1361;629 5445 24301;24302;24303;24304;24305;24306;24307;24308;24309;24310;24311;24312;24313;24314;24315;24316 16107;16108;16109;16110;16111;16112;16113;16114;16115 16114 9 NGADVNAKDMLK Oxidation (M) 1290.6238 0.6238001 138 B4DXA3;Q5SZG2;Q8TAK5 GABPB2 GA-binding protein subunit beta-2 yes no 0 1 1 By matching By matching By matching By matching By MS/MS By matching 1 1 69.469 61.171 2 0.013993 1 48306 20150910_Q1_SA_NiHu_Masterprac_group15_C 65.179 13.012 1590000 0 0 0 0 671270 918760 5530 138 5446 24317;24318 16116 16116 13 1 NGELIYGCK Unmodified 1052.4961 0.4960804 1503 Q9H8X2 IPPK Inositol-pentakisphosphate 2-kinase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 88.693 77.263 2 0.014686 3 59929 20150910_Q1_SA_NiHu_Masterprac_group13_C 77.533 49.452 4827300 0 0 1292200 0 1555900 1979200 5531 1503 5447 24319;24320;24321 16117;16118;16119 16117 3 NGFPHPEPDCNPSEAASEESNSEIEQEIPVEQK Unmodified 3693.6013 0.60129293 1534 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 132.6 127.64 3 3.1169E-07 1 87563 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.856 33.382 11404000 0 0 0 0 0 11404000 5532 1534 5448 24322 16120 16120 1 NGFVVLKGRPCK Unmodified 1373.7602 0.76017443 228 F8WCJ1;C9J7B5;C9J4W5;I3L397;Q9GZV4;P63241;P63241-2;I3L504 EIF5A2;EIF5A Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1 yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 84.452 76.873 3 1.0546E-06 5 58415 20150910_Q1_SA_NiHu_Masterprac_group15_C 102.52 77.509 81886000 7923100 9976300 11834000 11478000 22975000 17700000 5533 228 5449 24323;24324;24325;24326;24327;24328 16121;16122;16123;16124;16125 16124 5 NGIKVNFK Unmodified 918.5287 0.52870115 310 CON__Q9U6Y5 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 80.718 73.766 2 6.3554E-09 1 51056 20150910_Q1_SA_NiHu_Masterprac_group10_B 122.74 46.707 6972600 0 1928100 1885900 0 0 3158700 + 5534 310 5450 24329;24330;24331 16126 16126 1 NGLNFMYEAPPGAK Oxidation (M) 1523.7079 0.70786408 1270 Q86X95-2;Q86X95;F2Z3Q1 CIR1 Corepressor interacting with RBPJ 1 yes no 0 1 0 By matching By matching By matching By matching By matching By MS/MS 1 131.83 126.86 2 0.034746 1 86702 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.643 23.677 0 0 0 0 0 0 0 5535 1270 5451 24332 16127 16127 148 1 NGLSLAALK Unmodified 885.52837 0.5283668 842 P16401 HIST1H1B Histone H1.5 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 130.84 130.54 2 0.0062431 1 83594 20150910_Q1_SA_NiHu_Masterprac_group10_B 92.838 57.22 50982000 0 45976000 0 5006600 0 0 5536 842 5452 24333;24334 16128 16128 1 NGLSLAALKK Unmodified 1013.6233 0.62332982 842 P16401 HIST1H1B Histone H1.5 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 119.35 102.01 2 0.035974 1 72937 20150910_Q1_SA_NiHu_Masterprac_group15_C 96.665 69.618 0 0 0 0 0 0 0 5537 842 5453 24335 16129 16129 1 NGPFINREQLK Unmodified 1314.7044 0.70443369 1302 Q8N5C6;Q8N5C6-2;B7Z6X7 SRBD1 S1 RNA-binding domain-containing protein 1 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 91.673 84.165 2;3 2.9051E-07 7 62507 20150910_Q1_SA_NiHu_Masterprac_group15_C 107.34 69.744 33084000 1155500 4143100 6999600 3226300 5279400 12280000 5538 1302 5454 24336;24337;24338;24339;24340;24341;24342;24343;24344;24345 16130;16131;16132;16133;16134;16135;16136 16133 7 NGQDLGVAFK Unmodified 1047.5349 0.53490874 1022;1023 Q00839;B3KX72;Q5RI18;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 110 99.705 2 8.8058E-48 4 66841 20150910_Q1_SA_NiHu_Masterprac_group10_C 139.43 107.68 47090000 5950000 0 6562100 5129800 10541000 18907000 5539 1022;1023 5455 24346;24347;24348;24349;24350 16137;16138;16139;16140 16140 4 NGQTREHALLAYTLGVK Unmodified 1870.0061 0.006095016 1006 Q5VTE0;P68104;F8W6I0;Q05639 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 2 2 1 2 1 131.92 122.21 3;4 2.1928E-181 5 86967 20150910_Q1_SA_NiHu_Masterprac_group15_B 156 123.48 272780000 0 50511000 51776000 34884000 51958000 83647000 5540 1006 5456 24351;24352;24353;24354;24355;24356;24357;24358 16141;16142;16143;16144;16145 16141 5 NGRNAADPISGDFK Unmodified 1460.7008 0.70080487 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 85.234 83.202 3 0.015936 1 57094 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.037 21.97 1247400 0 747030 0 0 0 500410 5541 919 5457 24359;24360 16146 16146 1 NGSLRNADSEIK Unmodified 1302.6528 0.65279205 945;1251 P49792;E9PGT0;P0DJD0;P0DJD1;F8VYC4;Q99666;O14715;Q99666-2;F8W705;Q7Z3J3;B4DZH4 RANBP2;RGPD1;RGPD2;RGPD5;RGPD8;RGPD4 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8;RanBP2-like and GRIP domain-containing protein 4 no no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 53.686 47.561 2;3 0.0090035 3 34201 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.815 15.749 17293000 2468000 3635100 5027700 1619800 2646900 1895300 5542 945;1251 5458 24361;24362;24363;24364;24365;24366;24367;24368;24369;24370;24371;24372 16147;16148;16149 16149 3 NGSQSQTHSLQANDTFNK Unmodified 1975.8984 0.89839506 384 Q9NR81-4;E7EU49;Q9NR81;Q9NR81-3;E9PG37;Q9NR81-2 ARHGEF3 Rho guanine nucleotide exchange factor 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 73.308 64.685 3 0.0013106 1 45165 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.307 48.102 2044800 0 0 199640 0 0 1845100 5543 384 5459 24373;24374 16150 16150 1 NGSTAVAESVASPQK Unmodified 1444.7158 0.71578623 1063 Q12888;Q12888-2;A6NNK5;F8VY86;C9JXV0 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 72.947 67.282 2 0.027277 2 52393 20150910_Q1_SA_NiHu_Masterprac_group15_C 40.493 21.661 3700800 0 0 0 681850 1287200 1731800 5544 1063 5460 24375;24376;24377 16151;16152 16152 2 NGTGGLFQGKTPLRK Unmodified 1572.8736 0.87362428 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 93.54 88.363 3 0.0065515 1 60446 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.095 49.509 110210000 0 34763000 0 261150 18671000 56510000 5545 1611 5461 24378;24379;24380;24381 16153 16153 1 NGTLTFGDVDTSDEK Unmodified 1597.7108 0.71076044 1231 Q6PJG2;F6RU81 ELMSAN1 ELM2 and SANT domain-containing protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 120.57 115.91 2 0.038792 1 78929 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.116 24.526 654370 0 0 0 0 0 654370 5546 1231 5462 24382 16154 16154 1 NGTQLMIR Unmodified 931.49094 0.49093544 357 G3V2F4;E7EPD8;Q9NUW8;H0YJ44;Q86TV8 TDP1 Tyrosyl-DNA phosphodiesterase 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 91.229 82.28 2 0.011379 1 56571 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.318 60.029 2598300 0 0 0 0 244610 2353700 5547 357 5463 24383;24384 16155 16155 1 NGTVDGTSENTEDGLDRK Unmodified 1906.8504 0.85044181 248 Q8N3X6-2;C9JI46;Q8N3X6 LCORL Ligand-dependent nuclear receptor corepressor-like protein yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 60.977 55.713 3 0.0029652 1 44982 20150910_Q1_SA_NiHu_Masterprac_group15_C 46.121 32.703 2067700 0 0 0 552180 488640 1026900 5548 248 5464 24385;24386;24387 16156 16156 1 NGVFVDGAFQRR Unmodified 1364.6949 0.69493163 1017 P85037;F5H8G8 FOXK1 Forkhead box protein K1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 115.77 107.71 3 0.0022183 3 70681 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.232 48.613 6732000 0 915680 1148700 491510 1143200 3032800 5549 1017 5465 24388;24389;24390;24391;24392 16157;16158;16159 16159 3 NGVIFQEGGEK Unmodified 1176.5775 0.57750184 1330 Q8NI27 THOC2 THO complex subunit 2 yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 91.478 85.502 2 0.00075258 3 63197 20150910_Q1_SA_NiHu_Masterprac_group15_C 75.788 59.258 8393000 486200 781550 0 2277100 1271000 3577200 5550 1330 5466 24393;24394;24395;24396;24397 16160;16161;16162 16161 2 NGVLPQATGDQK Unmodified 1226.6255 0.62551466 1166 Q3L8U1-2;Q3L8U1-3;Q3L8U1 CHD9 Chromodomain-helicase-DNA-binding protein 9 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 74.933 66.485 2 0.0017984 1 46506 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.23 54.036 857970 0 0 0 0 263900 594070 5551 1166 5467 24398;24399 16163 16163 1 NGVQAMVEFDSVQSAQR Unmodified 1864.8738 0.87376021 838 P14866;A6NIT8;B4DPK8;B4DVF8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 133.09 132.49 2 1.8439E-90 1 86090 20150910_Q1_SA_NiHu_Masterprac_group10_B 131.45 106.57 13016000 0 13016000 0 0 0 0 5552 838 5468 24400 16164 16164 1 NGVQAMVEFDSVQSAQR Oxidation (M) 1880.8687 0.86867484 838 P14866;A6NIT8;B4DPK8;B4DVF8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 1 0 By MS/MS By matching By matching By matching By matching By matching 1 130.85 115.16 2 0.0095809 1 76442 20150910_Q1_SA_NiHu_Masterprac_group10_C 77.505 55.702 3412000 3412000 0 0 0 0 0 5553 838 5468 24401 16165 16165 88 1 NGVQAMVEFDSVQSAQRAK Unmodified 2064.0058 0.0058370195 838 P14866;A6NIT8;B4DPK8;B4DVF8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.56 130.95 2 0.0032648 1 84400 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.708 42.915 4199800 0 4199800 0 0 0 0 5554 838 5469 24402 16166 16166 1 NGYNLRRHEAIHTGAK Unmodified 1835.9503 0.95031147 219 C6G496;P56270;G5E927 MAZ Myc-associated zinc finger protein yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 50.649 43.905 4 0.010732 1 31160 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.252 28.75 16845000 0 0 0 0 9819000 7025500 5555 219 5470 24403;24404 16167 16167 1 NHDHQEIAVPVANLK Unmodified 1683.8693 0.86926718 747 O75607 NPM3 Nucleoplasmin-3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 114.02 104.93 3 0.0013981 4 69132 20150910_Q1_SA_NiHu_Masterprac_group10_B 68.168 32.645 12564000 1189200 1865400 2182800 821990 1962000 4542500 5556 747 5471 24405;24406;24407;24408;24409;24410 16168;16169;16170;16171 16169 3 NHETTNLSIQQK Unmodified 1411.7056 0.7055559 361 Q9GZR1-2;Q9GZR1;E7EQN6;B3KMM0;H0Y8Y8 SENP6 Sentrin-specific protease 6 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 54.322 52.39 3 0.0015144 1 37543 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.709 67.03 941980 0 225610 0 0 0 716370 5557 361 5472 24411;24412 16172 16172 1 NHFKGGQSGLNLSK Unmodified 1485.7688 0.76882486 1540 Q9NRZ9-6;Q9NRZ9-5;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9;Q9NW36 HELLS Lymphoid-specific helicase yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 65.71 57.237 3 0.0068027 1 46840 20150910_Q1_SA_NiHu_Masterprac_group13_C 53.869 20.108 3653100 0 771350 1824800 0 384540 672380 5558 1540 5473 24413;24414;24415;24416 16173 16173 1 NHLEEHTDTCLPK Unmodified 1592.7253 0.72530506 553 F8W689;P48382;F6TYI9;F6X9D6;F6R6G4;F6UE82;F6U6P3 RFX5 DNA-binding protein RFX5 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 62.79 58.745 3 0.0041095 1 41444 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.423 39.648 1306300 119100 374070 0 0 0 813160 5559 553 5474 24417;24418;24419 16174 16174 1 NHPEEFCEFVK Unmodified 1434.6238 0.6238001 778 O96006;C9JXP4 ZBED1 Zinc finger BED domain-containing protein 1 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 117.18 109.46 2;3 1.9361E-70 6 71846 20150910_Q1_SA_NiHu_Masterprac_group10_B 148.28 116.4 21203000 0 4737100 324670 0 2438500 13702000 5560 778 5475 24420;24421;24422;24423;24424;24425;24426;24427 16175;16176;16177;16178;16179;16180 16179 6 NHVAAHGQSLLKCPR Unmodified 1686.8736 0.87364106 1399 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 60.15 53.673 4 0.00060665 4 37872 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.386 51.966 18274000 0 3486400 2133000 1463500 6343000 4848100 5561 1399 5476 24428;24429;24430;24431;24432 16181;16182;16183;16184 16183 4 NIDQCSEIVK Unmodified 1204.5758 0.57578728 1362 Q92878-2;Q92878;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 81.207 75.452 2 0.0030207 3 57372 20150910_Q1_SA_NiHu_Masterprac_group15_C 93.096 51.391 9527700 951130 1719400 0 1522500 4871000 463740 5562 1362 5477 24433;24434;24435;24436;24437 16185;16186;16187 16186 3 NIGLGFKTPK Unmodified 1073.6233 0.62332982 989 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 112.41 104.39 2 0.007765 3 74192 20150910_Q1_SA_NiHu_Masterprac_group15_C 93.442 33.511 44474000 0 6018100 5341600 5794400 12690000 14630000 5563 989 5478 24438;24439;24440;24441;24442 16188;16189;16190 16190 3 NIHHHQILAINRGENLK Unmodified 2006.0922 0.092224682 1302 Q8N5C6;Q8N5C6-2 SRBD1 S1 RNA-binding domain-containing protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 75.969 74.715 4 0.0028681 1 51724 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.372 34.138 2575000 0 0 0 0 0 2575000 5564 1302 5479 24443 16191 16191 1 NIIEWREK Unmodified 1086.5822 0.58219329 1302 Q8N5C6;Q8N5C6-2;B7Z6X7 SRBD1 S1 RNA-binding domain-containing protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 102.7 94.875 2 0.039898 1 64924 20150910_Q1_SA_NiHu_Masterprac_group15_B 85.161 40.079 9241600 0 1068200 2644100 2208000 1504700 1816600 5565 1302 5480 24444;24445;24446;24447;24448 16192 16192 1 NIILEEGK Unmodified 914.5073 0.50729701 461 E9PP50;P23528;G3V1A4;E9PK25;E9PQB7;E9PLJ3;E9PS23 CFL1 Cofilin-1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 91.681 83.935 2 0.015568 1 63718 20150910_Q1_SA_NiHu_Masterprac_group13_C 84.498 33.152 17305000 1280500 3326300 2533200 729290 1917800 7518400 5566 461 5481 24449;24450;24451;24452;24453;24454 16193 16193 1 NIIRPQLK Unmodified 980.6131 0.61309948 1030 Q01780;Q01780-2;B4DKG8 EXOSC10 Exosome component 10 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 80.048 73.096 2 0.038771 1 50519 20150910_Q1_SA_NiHu_Masterprac_group10_B 86.794 19.762 4908900 0 954740 1782100 0 0 2172100 5567 1030 5482 24455;24456;24457 16194 16194 1 NILDRQDPPSVVVTSHQAPGEK Unmodified 2386.2241 0.2240863 874 P25311 AZGP1 Zinc-alpha-2-glycoprotein yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 129.67 111.67 4 0.013979 1 80329 20150910_Q1_SA_NiHu_Masterprac_group13_C 37.817 15.915 4455800 0 0 4455800 0 0 0 5568 874 5483 24458 16195 16195 1 NINTFVETPVQK Unmodified 1388.73 0.72997974 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 2 1 130.47 118.79 2 0 7 77605 20150910_Q1_SA_NiHu_Masterprac_group10_C 253.97 197.56 335280000 78004000 40754000 94824000 0 14743000 106960000 5569 919;920 5484 24459;24460;24461;24462;24463;24464;24465;24466 16196;16197;16198;16199;16200;16201;16202 16202 7 NIPCAAVSPNRSK Unmodified 1412.7194 0.71943182 1070 Q13118-2;Q13118 KLF10 Krueppel-like factor 10 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 68.533 61.323 3 0.0086828 2 44398 20150910_Q1_SA_NiHu_Masterprac_group10_C 57.106 37.264 5401900 877850 310960 623180 1176200 1609400 804280 5570 1070 5485 24467;24468;24469;24470;24471;24472 16203;16204 16204 2 NIQKLPVESK Unmodified 1154.6659 0.66592292 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 72.377 65.033 2 9.6688E-61 5 45454 20150910_Q1_SA_NiHu_Masterprac_group15_B 143.5 56.62 21534000 1534400 2478000 3335700 1315200 5702400 7167800 5571 919;920 5486 24473;24474;24475;24476;24477;24478 16205;16206;16207;16208;16209 16206 5 NIQVSHQEFSK Unmodified 1315.6521 0.65206377 429 Q8WUM4;E9PFU1 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 73.418 66.024 2;3 0.0027476 7 46227 20150910_Q1_SA_NiHu_Masterprac_group10_B 85.973 57.396 15162000 1112900 2253600 2629300 1278700 2543600 5344100 5572 429 5487 24479;24480;24481;24482;24483;24484;24485;24486;24487;24488;24489;24490 16210;16211;16212;16213;16214;16215;16216 16216 7 NITLDDASAPR Unmodified 1171.5833 0.5833155 433 E9PLT0;O75534-2;O75534;E9PGZ0;G5E9Q2 CSDE1 Cold shock domain-containing protein E1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 93.988 91.731 2 0.0049151 1 62779 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.611 48.199 1594800 0 0 0 0 0 1594800 5573 433 5488 24491 16217 16217 1 NIVVIDDDKSETCNEDLAGTTDEK Unmodified 2680.2021 0.20214938 196 B7Z8R4;Q15723-4;E9PCX3;Q15723-2;Q15723-3;Q15723-1;Q15723;D6R9B1 ELF2 ETS-related transcription factor Elf-2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 126.39 116.63 3 1.0471E-10 4 81194 20150910_Q1_SA_NiHu_Masterprac_group13_C 80.868 72.359 37160000 23603000 1631500 9413800 0 0 2511400 5574 196 5489 24492;24493;24494;24495 16218;16219;16220;16221 16218 3 NIWVSGLSSNTK Unmodified 1304.6725 0.67246486 1554 Q9NWH9;H7BXE3 SLTM SAFB-like transcription modulator yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 130.97 130.66 2 0.0033379 1 83778 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.68 44.668 12333000 0 7224900 0 5108400 0 0 5575 1554 5490 24496;24497 16222 16222 1 NIYAFMGTPVQK Oxidation (M) 1383.6857 0.68567208 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 1 0 By matching By matching By matching By MS/MS By matching By matching 1 120.01 120.01 2 0.022214 1 77131 20150910_Q1_SA_NiHu_Masterprac_group13_B 57.175 21.51 0 0 0 0 0 0 0 5576 919;920 5491 24498 16223 16223 106 1 NIYSEELR Unmodified 1022.5033 0.50327426 783 P02545;P02545-3;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q3BDU5;Q5TCJ4;Q5TCI8;H0YAB0 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 95.552 89.415 2 0.008839 2 61318 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.143 29.724 24176000 1095500 5518600 0 1387700 3804200 12370000 5577 783 5492 24499;24500;24501;24502;24503 16224;16225 16224 2 NKEINSDQATQGNISSDRGK Unmodified 2161.036 0.035951174 1159 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 47.807 45.249 3 0.016446 1 32439 20150910_Q1_SA_NiHu_Masterprac_group10_B 45.347 31.362 2576100 502080 802510 0 312790 0 958680 5578 1159 5493 24504;24505;24506;24507 16226 16226 1 NKETLGSEAVSSNVIDYGHASK Unmodified 2305.1186 0.11861817 1118 Q14966-3;Q14966;Q14966-4;Q14966-2;C9JBI6;F5H330 ZNF638 Zinc finger protein 638 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 118.13 108.98 3;4 5.1227E-06 2 74792 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.174 54.302 4949300 1037100 0 0 640460 1047200 2224600 5579 1118 5494 24508;24509;24510;24511 16227;16228 16227 2 NKEVFIPQDGK Unmodified 1273.6667 0.6666512 938 P49589;P49589-3;P49589-2;B4DKY1;E9PRS8 CARS Cysteine--tRNA ligase, cytoplasmic yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 76.722 73.588 2 0.014817 3 51044 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.153 44.004 2496200 718260 253940 0 736610 0 787360 5580 938 5495 24512;24513;24514;24515;24516 16229;16230;16231 16230 3 NKEVFIPQDGKK Unmodified 1401.7616 0.76161421 938 P49589;P49589-3;P49589-2;B4DKY1;E9PRS8 CARS Cysteine--tRNA ligase, cytoplasmic yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 63.13 56.452 3 0.012449 1 39743 20150910_Q1_SA_NiHu_Masterprac_group13_B 66.538 41.343 12916000 0 900500 1297700 1461800 6013100 3243000 5581 938 5496 24517;24518;24519;24520;24521 16232 16232 1 NKFQPPQVPDQAPAEAPTEK Unmodified 2191.0909 0.090946857 462 E9PPY3;O43159 RRP8 Ribosomal RNA-processing protein 8 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 123.2 113.45 3 2.194E-38 3 75463 20150910_Q1_SA_NiHu_Masterprac_group10_C 109.13 87.076 16671000 7926500 801340 0 0 4516400 3427000 5582 462 5497 24522;24523;24524;24525 16233;16234;16235 16235 3 NKIEPLGYCEDAESNRQLESTEFNK Unmodified 2970.3665 0.36652937 1353 Q92576-2;Q92576;E7EVH3;E9PE34;B3KP41;D6R9X2 PHF3 PHD finger protein 3 yes no 0 0 2 By matching By MS/MS By matching By MS/MS By matching By MS/MS 2 1 1 130.15 128.61 3;4 1.3565E-64 4 82873 20150910_Q1_SA_NiHu_Masterprac_group10_B 110.33 103.18 42742000 0 18462000 0 3590500 0 20689000 5583 1353 5498 24526;24527;24528;24529 16236;16237;16238;16239 16239 4 NKLASTPFKGGTLFGGEVCK Unmodified 2110.0881 0.088110086 913 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 131.87 121.57 3;4 0.00010369 6 80964 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.024 48.771 84385000 0 7916700 32154000 36876000 7437700 0 5584 913 5499 24530;24531;24532;24533;24534;24535;24536 16240;16241;16242;16243;16244;16245 16244 6 NKLTGEVVALKK Unmodified 1298.7922 0.79218606 589 P24941-2;P24941;G3V5T9;E7ESI2;G3V317 CDK2 Cyclin-dependent kinase 2 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 81.602 80.046 3 0.010167 1 55118 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.273 38.578 0 0 0 0 0 0 0 5585 589 5500 24537 16246 16246 1 NKPGPYSSVPPPSAPPPK Unmodified 1815.9519 0.95193418 1120 Q14978;Q14978-3;Q14978-2 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 98.347 82.004 3 0.017198 1 61195 20150910_Q1_SA_NiHu_Masterprac_group15_C 39.585 21.172 1085700 0 0 0 0 1085700 0 5586 1120 5501 24538 16247 16247 1 NKPIVNIDPQTAELNHLK Unmodified 2043.1113 0.11128837 768 O95239;O95239-2 KIF4A Chromosome-associated kinesin KIF4A yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 130.96 130.35 4 0.0025375 1 83828 20150910_Q1_SA_NiHu_Masterprac_group10_B 52.172 29.346 929960 0 929960 0 0 0 0 5587 768 5502 24539 16248 16248 1 NKPKPAAEPSNGIPDSSK Unmodified 1835.9377 0.93774068 659 Q86XZ4;H7BYM7;F8VS10 SPATS2 Spermatogenesis-associated serine-rich protein 2 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 52.203 46.179 3 0.0053625 1 33144 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.424 33.886 4502600 332650 951940 507980 347450 1014100 1348400 5588 659 5503 24540;24541;24542;24543;24544;24545 16249 16249 1 NKSNESVDIQDQEEK Unmodified 1761.8017 0.80170071 1201 Q5UIP0-2;Q5UIP0 RIF1 Telomere-associated protein RIF1 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 56.913 50.396 3 8.69E-56 6 41330 20150910_Q1_SA_NiHu_Masterprac_group15_C 127.05 106.62 14749000 4300200 148530 3879200 1477700 2179300 2764100 5589 1201 5504 24546;24547;24548;24549;24550;24551;24552 16250;16251;16252;16253;16254;16255 16252 6 NLAGRSVEDCAAK Unmodified 1389.6671 0.6670619 295 CON__P06868 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 55.881 49.745 3 0.0099828 1 35471 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.776 31.5 7102700 0 840820 1203900 2497200 1666200 894540 + 5590 295 5505 24553;24554;24555;24556;24557 16256 16256 1 NLDIERPTYTNLNR Unmodified 1717.8747 0.87474649 518;44 G3V1U9;Q9BQE3;Q71U36;P68363;F5H5D3;F8VXZ4;Q6PEY2;Q13748;Q13748-2;F8VVB9;Q9NY65-2;Q9NY65;C9J2C0;F8VQQ4;C9JDS9;A8MUB1;P68366 TUBA1A;TUBA1C;TUBA1B;TUBA3E;TUBA3C;TUBA8;TUBA4A Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-3E chain;Tubulin alpha-3C/D chain;Tubulin alpha-8 chain;Tubulin alpha-4A chain no no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 130.88 115.19 3 0.0048506 1 76514 20150910_Q1_SA_NiHu_Masterprac_group10_C 57.106 37.057 5383800 5383800 0 0 0 0 0 5591 518;44 5506 24558 16257 16257 1 NLDNAVLIGETGSGK Unmodified 1486.7627 0.76273643 1496 Q9H6R0 DHX33 Putative ATP-dependent RNA helicase DHX33 yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 129.24 121.43 2 1.3369E-08 3 80790 20150910_Q1_SA_NiHu_Masterprac_group15_C 98.508 67.634 25768000 5339100 1685000 0 696000 2987300 15061000 5592 1496 5507 24559;24560;24561;24562;24563 16258;16259;16260 16259 2 NLDSTTVAIHDEEIYCK Unmodified 2006.9255 0.92552101 1152 Q16527;F8VW96;F8VQR7 CSRP2 Cysteine and glycine-rich protein 2 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 2 130.36 121.18 2;3 0 6 85396 20150910_Q1_SA_NiHu_Masterprac_group15_B 203.89 171.59 420160000 0 177940000 85560000 5151300 4098600 147400000 5593 1152 5508 24564;24565;24566;24567;24568;24569;24570 16261;16262;16263;16264;16265;16266 16264 6 NLDSTTVAVHGEEIYCK Unmodified 1934.9044 0.90439164 859 P21291;E9PND2;B3KVC9;E9PS42 CSRP1 Cysteine and glycine-rich protein 1 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 2 1 1 1 121.5 114.11 2;3 8.78E-08 4 75615 20150910_Q1_SA_NiHu_Masterprac_group10_C 91.657 80.537 18810000 13807000 978510 0 2467200 0 1557600 5594 859 5509 24571;24572;24573;24574;24575 16267;16268;16269;16270 16269 4 NLDSVQKLPK Unmodified 1140.6503 0.65027285 1103 Q14241 TCEB3 Transcription elongation factor B polypeptide 3 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 85.672 76.578 2 0.010951 2 52824 20150910_Q1_SA_NiHu_Masterprac_group10_B 88.134 44.715 2919000 574970 896170 380870 0 333990 733030 5595 1103 5510 24576;24577;24578;24579;24580 16271;16272 16271 2 NLEDDTLSECKQVSDK Unmodified 1879.8469 0.84693634 1118 Q14966-3;Q14966;Q14966-4;Q14966-2;C9JBI6;F5H330 ZNF638 Zinc finger protein 638 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 97.972 92.607 3 0.0060525 2 62400 20150910_Q1_SA_NiHu_Masterprac_group10_B 48.216 13.784 4785700 0 1395400 1059700 756190 0 1574400 5596 1118 5511 24581;24582;24583;24584 16273;16274 16274 2 NLEEAAAAEQGGGCDQVDSSPVPR Unmodified 2456.0874 0.087394397 1638 Q9Y2U8 LEMD3 Inner nuclear membrane protein Man1 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 130.58 114.89 2 0.0040697 1 76211 20150910_Q1_SA_NiHu_Masterprac_group10_C 42.347 31.189 1565600 1565600 0 0 0 0 0 5597 1638 5512 24585 16275 16275 1 NLEEGHSSTVAAHYNELQEVGLEK Unmodified 2653.262 0.26198794 709 O43148;O43148-2 RNMT mRNA cap guanine-N7 methyltransferase yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 131.21 119.23 3;4 1.5761E-264 12 83653 20150910_Q1_SA_NiHu_Masterprac_group13_B 161.97 149.38 270030000 35568000 0 63221000 93389000 4710200 73136000 5598 709 5513 24586;24587;24588;24589;24590;24591;24592;24593;24594 16276;16277;16278;16279;16280;16281;16282;16283;16284;16285;16286;16287 16279 12 NLEENYCRNPNGEK Unmodified 1735.7584 0.75839611 295 CON__P06868 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 61.121 56.445 3 0.02587 1 39926 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.03 28.859 4134900 0 683950 0 386260 929260 2135400 + 5599 295 5514 24595;24596;24597;24598 16288 16288 1 NLEENYCRNPNGEKAPWCYTTNSEVR Unmodified 3200.404 0.40399428 295 CON__P06868 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 130.53 121.68 3;4 1.051E-13 7 81591 20150910_Q1_SA_NiHu_Masterprac_group13_C 76.241 70.681 218980000 28073000 25088000 26048000 12168000 27106000 100500000 + 5600 295 5515 24599;24600;24601;24602;24603;24604;24605 16289;16290;16291;16292;16293;16294;16295 16290 6 NLEPGKQISR Unmodified 1140.6251 0.62512073 503 F5H082;Q9UER7;Q9UER7-2 DAXX Death domain-associated protein 6 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 56.287 49.961 2 0.024737 4 41057 20150910_Q1_SA_NiHu_Masterprac_group15_C 75.652 17.422 9285800 721270 1720600 2244100 482160 1262000 2855700 5601 503 5516 24606;24607;24608;24609;24610;24611 16296;16297;16298;16299 16297 4 NLEQQVNHSQQGHTNANAVLFSQVK Unmodified 2790.3798 0.37975209 605 Q6ZW49-2;H0Y2Z7;Q6ZW49-4;Q6ZW49-3;Q6ZW49-1;Q6ZW49 PAXIP1 PAX-interacting protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 129.43 124.46 4 0.0042101 1 84184 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.215 28.795 2237900 0 0 0 0 0 2237900 5602 605 5517 24612 16300 16300 1 NLETDNKIKQTSSSDSHSLNNK Unmodified 2459.1888 0.188823 1506 Q9H9A7 RMI1 RecQ-mediated genome instability protein 1 yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 64.789 56.334 4 0.0024903 1 39831 20150910_Q1_SA_NiHu_Masterprac_group10_B 48.567 40.816 5178000 1291300 3422800 463930 0 0 0 5603 1506 5518 24613;24614;24615 16301 16301 1 NLETSSAFQSSSQK Unmodified 1512.7056 0.70561548 19 A6NF48;Q9Y2X9;F5H1Z5 ZNF281 Zinc finger protein 281 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 83.096 75.518 2 9.7496E-05 6 52286 20150910_Q1_SA_NiHu_Masterprac_group10_B 89.624 79.845 7692500 603600 1292300 1558300 620880 1695100 1922300 5604 19 5519 24616;24617;24618;24619;24620;24621 16302;16303;16304;16305;16306;16307 16306 5 NLFIEAGCSVK Unmodified 1236.6173 0.61725816 774 O95758-1;O95758-6;O95758-2;O95758;O95758-5;O95758-4;B1ALY6 PTBP3 Polypyrimidine tract-binding protein 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.16 130.56 2 0.0060017 1 83989 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.728 41.195 13007000 0 13007000 0 0 0 0 5605 774 5520 24622 16308 16308 1 NLFISCK Unmodified 880.44767 0.44767364 913 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 104.4 97.233 1;2 0.024751 2 66646 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.281 15.779 8384000 6838200 0 0 0 0 1545800 5606 913 5521 24623;24624 16309;16310 16309 2 NLGFTAIPLHGQMSQSK Unmodified 1827.9302 0.93015288 1481 Q9H0S4 DDX47 Probable ATP-dependent RNA helicase DDX47 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 133.42 128.46 2 0.0012462 1 88512 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.949 35.374 0 0 0 0 0 0 0 5607 1481 5522 24625 16311 16311 1 NLGNIKVTK Unmodified 985.59203 0.59202969 1248 Q7Z2T5;Q7Z2T5-2 TRMT1L TRMT1-like protein yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 72.3 63.507 2 0.037231 1 44513 20150910_Q1_SA_NiHu_Masterprac_group10_B 78.098 15.516 4125800 520930 1056200 1290600 0 330900 927170 5608 1248 5523 24626;24627;24628;24629;24630 16312 16312 1 NLHHTQELLYESTK Unmodified 1711.8529 0.85294842 506 F5H0W5;Q9BR77-2;Q9BR77 CCDC77 Coiled-coil domain-containing protein 77 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 92.491 85.472 3 8.6489E-13 2 58435 20150910_Q1_SA_NiHu_Masterprac_group15_B 103.14 72.829 9703700 0 2026800 1912800 0 0 5764100 5609 506 5524 24631;24632;24633 16313;16314 16314 2 NLKLIEEK Unmodified 985.5808 0.5807963 23 A6NHR9 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 81.04 72.77 2 3.4232E-07 1 51321 20150910_Q1_SA_NiHu_Masterprac_group10_C 117.81 31.141 0 0 0 0 0 0 0 5610 23 5525 24634 16315 16315 1 NLKRPIAHLPCPGK Unmodified 1599.9032 0.90315027 1069 Q13112 CHAF1B Chromatin assembly factor 1 subunit B yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 90.424 78.894 4 0.0031753 3 59301 20150910_Q1_SA_NiHu_Masterprac_group15_C 59.155 32.15 4283900 0 0 416810 0 1318600 2548500 5611 1069 5526 24635;24636;24637 16316;16317;16318 16318 3 NLLAQENVETQNLK Unmodified 1612.842 0.84204938 250 C9JIX7;F5H549;Q9Y2D8-2;Q9Y2D8 SSX2IP Afadin- and alpha-actinin-binding protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 126.67 121.81 2 0.0011068 1 82663 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.415 49.481 509680 0 0 0 0 0 509680 5612 250 5527 24638 16319 16319 1 NLLESLKGNRTENFTK Unmodified 1862.985 0.98502522 1551 Q9NVV4;Q9NVV4-2 MTPAP Poly(A) RNA polymerase, mitochondrial yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 130.54 125.57 3 0.0051844 1 85325 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.746 18.066 32765000 0 0 0 0 0 32765000 5613 1551 5528 24639 16320 16320 1 NLLHSLQSSGIGSK Unmodified 1439.7732 0.77324153 1355 Q92616 GCN1L1 Translational activator GCN1 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 131.37 115.68 3 0.0009228 1 76938 20150910_Q1_SA_NiHu_Masterprac_group10_C 71.529 44.586 2566500 2566500 0 0 0 0 0 5614 1355 5529 24640 16321 16321 1 NLLSLGHNNIVR Unmodified 1348.7575 0.75753189 1038 Q05048 CSTF1 Cleavage stimulation factor subunit 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 130.82 130.22 3 9.518E-07 1 83602 20150910_Q1_SA_NiHu_Masterprac_group10_B 99.539 63.765 0 0 0 0 0 0 0 5615 1038 5530 24641 16322 16322 1 NLLTVTSSDEMMK Unmodified 1467.6949 0.69491614 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 133.27 133.27 2 0.012803 1 86357 20150910_Q1_SA_NiHu_Masterprac_group13_B 52.966 35.395 22452000 0 0 0 22452000 0 0 5616 1012 5531 24642 16323 16323 1 NLNPNDSIVVNSCQMK Unmodified 1831.8557 0.85566731 1059 Q12789-3;Q12789;H7BYG6 GTF3C1 General transcription factor 3C polypeptide 1 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 125.89 118.9 2 0.0031279 2 81608 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.281 38.29 5646100 1578800 812190 0 0 0 3255200 5617 1059 5532 24643;24644;24645 16324;16325 16324 2 NLPDPGKAQDFVK Unmodified 1427.7409 0.74087877 1159 Q29RF7;Q29RF7-3 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 122.17 111.73 2;3 0.0012007 6 72587 20150910_Q1_SA_NiHu_Masterprac_group13_B 77.74 55.419 45331000 7507400 2996200 16024000 8004800 1643600 9154900 5618 1159 5533 24646;24647;24648;24649;24650;24651;24652 16326;16327;16328;16329;16330;16331 16327 6 NLPFKTSGLETAKK Unmodified 1532.8562 0.85624288 27 F5H101;Q76FK4-2;Q76FK4-4;A6NJK7;Q76FK4;F8WE42;Q76FK4-3;F5GWN9 NOL8 Nucleolar protein 8 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 99.211 94.164 3 0.0034575 2 64510 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.879 46.644 4488200 853290 1404300 0 0 0 2230600 5619 27 5534 24653;24654;24655 16332;16333 16332 2 NLPLPPPPPPR Unmodified 1193.6921 0.69207809 984 P61978-3;P61978-2;B4DFF1;P61978;Q5T6W5;Q5T6W2;Q5T6W1 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 130.19 128.33 2 0.015836 2 85793 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.847 27.42 7035400 0 1786700 0 431290 0 4817400 5620 984 5535 24656;24657;24658 16334;16335 16334 1 NLPLPPPPPPRGGDLMAYDRR Unmodified 2328.2161 0.21610457 984 P61978-3;P61978-2;B4DFF1;P61978;Q5T6W5;Q5T6W2;Q5T6W1 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 132.68 120.73 4 0.002058 3 83679 20150910_Q1_SA_NiHu_Masterprac_group13_C 49.425 33.11 90344000 0 0 35857000 35827000 18660000 0 5621 984 5536 24659;24660;24661 16336;16337;16338 16337 3 NLPLPPPPPPRGGDLMAYDRR Oxidation (M) 2344.211 0.21101919 984 P61978-3;P61978-2;B4DFF1;P61978;Q5T6W5;Q5T6W2;Q5T6W1 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 1 2 By matching By matching By matching By matching By matching By MS/MS 1 131.73 126.77 4 0.0082031 1 86629 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.425 30.469 37842000 0 0 0 0 0 37842000 5622 984 5536 24662 16339 16339 116 1 NLPQYVSNELLEEAFSVFGQVER Unmodified 2667.318 0.31804626 1133 Q15233;F5GYZ3;C9IZL7 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 5 2 2 2 134.36 129.53 2;3 0 11 85399 20150910_Q1_SA_NiHu_Masterprac_group13_C 187.04 170.44 1896100000 0 921550000 523760000 241420000 0 209350000 5623 1133 5537 24663;24664;24665;24666;24667;24668;24669;24670;24671;24672;24673 16340;16341;16342;16343;16344;16345;16346;16347;16348;16349;16350 16343 11 NLPSSAQPFIPK Unmodified 1297.703 0.7030367 1202 Q5VT52-3;Q5VT52;B4E2Q6;Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 132.07 131.77 2 0.0035654 1 84892 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.229 28.732 9107600 0 7257100 0 1850500 0 0 5624 1202 5538 24674;24675 16351 16351 1 NLPYKVTQDELK Unmodified 1446.7718 0.77184455 397 E7EX81;P19338 NCL Nucleolin yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 2 2 1 2 112.4 104.42 2;3 0.00049799 4 69963 20150910_Q1_SA_NiHu_Masterprac_group10_C 96.334 62.151 10281000 3015100 3330000 0 0 1677200 2259200 5625 397 5539 24676;24677;24678;24679;24680;24681;24682 16352;16353;16354;16355 16355 3 NLQEGNEVDSQSSIR Unmodified 1674.7809 0.78090569 97 B4DLG2;O75152;E9PQ61 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 83.646 76.246 2 0.00062919 3 52571 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.526 69.477 5720900 0 1351500 902430 574610 1608200 1284100 5626 97 5540 24683;24684;24685;24686;24687 16356;16357;16358 16356 3 NLQEGNEVDSQSSIRTEAK Unmodified 2104.0033 0.0032540621 97 B4DLG2;O75152;E9PQ61 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 2 2 2 81.716 74.941 2;3 0.00042941 4 51892 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.826 43.6 71301000 0 19351000 15083000 12692000 14077000 10099000 5627 97 5541 24688;24689;24690;24691;24692;24693;24694;24695 16359;16360;16361;16362 16362 4 NLQLALANSSR Unmodified 1185.6466 0.64658446 1351 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 118.44 113.13 2 0.0048669 1 76977 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.091 32.479 23131000 1896200 3182900 0 1058300 0 16993000 5628 1351 5542 24696;24697;24698;24699 16363 16363 1 NLQLLVPK Unmodified 923.5804 0.58040237 835 P13682;C9JGR2 ZNF35 Zinc finger protein 35 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.65 132.04 2 0.017128 1 85556 20150910_Q1_SA_NiHu_Masterprac_group10_B 82.241 41.462 11788000 0 11788000 0 0 0 0 5629 835 5543 24700 16364 16364 1 NLQLMEGKEPATGAK Unmodified 1585.8134 0.81339179 426 E9PFZ0;P38398-4;P38398-2;P38398;E9PFC7;E7EP70;F8W8H7;E7EMP0 BRCA1 Breast cancer type 1 susceptibility protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 2 100.17 92.401 2;3 0.0022871 3 63162 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.197 36.197 7209800 0 0 811110 213510 424310 5760800 5630 426 5544 24701;24702;24703;24704;24705 16365;16366;16367 16367 3 NLQSVVLSK Unmodified 986.57605 0.57604528 162 B4E2Z2;P43246;E9PHA6;E7EU21;E7EQQ1;C9J809 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 110.93 102.08 2 0.0087373 3 69474 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.898 20.206 38941000 2744400 10756000 5082900 3283000 623260 16452000 5631 162 5545 24706;24707;24708;24709;24710;24711 16368;16369;16370 16369 3 NLQYYDISAK Unmodified 1213.5979 0.59790293 173 P62826;B5MDF5;F5H018;B4DV51 RAN GTP-binding nuclear protein Ran yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 121.77 110.26 2 0.0090532 1 72381 20150910_Q1_SA_NiHu_Masterprac_group10_B 76.927 51.913 7289700 1348900 4840500 0 0 1100300 0 5632 173 5546 24712;24713;24714 16371 16371 1 NLSESPVITKAK Unmodified 1285.7242 0.72416608 1061 Q12830-4;Q12830-2;Q12830 BPTF Nucleosome-remodeling factor subunit BPTF yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 77.863 69.492 2 0.028853 1 55241 20150910_Q1_SA_NiHu_Masterprac_group13_C 58.04 17.663 4915000 595650 0 1716500 695470 638080 1269200 5633 1061 5547 24715;24716;24717;24718;24719 16372 16372 1 NLSGWWYIQIEDK Unmodified 1650.8042 0.80420731 2 A1X283 SH3PXD2B SH3 and PX domain-containing protein 2B yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 133.57 115.58 2 0.028618 1 84555 20150910_Q1_SA_NiHu_Masterprac_group13_C 59.796 27.914 8079000 0 0 8079000 0 0 0 5634 2 5548 24720 16373 16373 0 NLSNPEMTSGSDK Unmodified 1378.6035 0.60345859 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 60.553 59.399 2 0.021384 1 41842 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.712 26.056 270120 0 0 0 0 0 270120 5635 578 5549 24721 16374 16374 1 NLTHMQDEVNVK Unmodified 1426.6875 0.68746299 512 F5H2B9;H0YNH8;G3XAG2;Q9BZF9;Q8NDD7;H0YN48;Q96NH6 UACA;DKFZp564M063 Uveal autoantigen with coiled-coil domains and ankyrin repeats yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 94.652 85.503 3 0.0032291 1 58520 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.252 49.049 2089900 0 0 0 0 693320 1396600 5636 512 5550 24722;24723 16375 16375 1 NLTYSCRSNQDCIINK Unmodified 1984.9095 0.90949379 256 C9JKS0;P49116;P49116-2 NR2C2 Nuclear receptor subfamily 2 group C member 2 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 100.68 89.653 3 0.0034344 2 60789 20150910_Q1_SA_NiHu_Masterprac_group13_B 53.377 42.516 7168200 3847900 0 896450 1340500 1083300 0 5637 256 5551 24724;24725;24726;24727 16376;16377 16377 2 NLVDNVAK Unmodified 871.47633 0.47633123 1471 Q9BZE4;B7Z7A3;Q5T3R7 GTPBP4 Nucleolar GTP-binding protein 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 80.925 69.696 2 0.029415 1 53952 20150910_Q1_SA_NiHu_Masterprac_group15_C 71.379 34.22 3775900 0 0 1051900 0 1338000 1386000 5638 1471 5552 24728;24729;24730 16378 16378 1 NLVPGESVYGEK Unmodified 1290.6456 0.6455814 862 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 113.64 104.56 2 0.0018256 4 75918 20150910_Q1_SA_NiHu_Masterprac_group13_C 82.774 35.547 74156000 10149000 7743100 7070400 7883300 21888000 19422000 5639 862 5553 24731;24732;24733;24734;24735;24736 16379;16380;16381;16382 16380 4 NLWVSGLSSTTRATDLK Unmodified 1847.9741 0.97412619 1097 Q14151;A8MXT5;C9JPX0;F5GXS4 SAFB2 Scaffold attachment factor B2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 133.61 128.64 3 0.0018446 1 88675 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.288 36.035 13812000 0 0 0 0 0 13812000 5640 1097 5554 24737 16383 16383 1 NMAINPSKENLCSTFCK Oxidation (M) 2028.9067 0.9067166 289 CON__P02663 yes yes 0 1 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 115.95 108.33 3 2.5797E-43 7 76493 20150910_Q1_SA_NiHu_Masterprac_group15_C 114.54 102.07 30214000 8263300 3791600 0 3740000 8131400 6288200 + 5641 289 5555 24738;24739;24740;24741;24742;24743 16384;16385;16386;16387;16388;16389;16390 16388 23 5 NMAINPSKENLCSTFCK Unmodified 2012.9118 0.91180198 289 CON__P02663 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 130.42 124.56 2;3 1.7643E-271 7 85600 20150910_Q1_SA_NiHu_Masterprac_group15_B 177.04 159.8 338440000 0 59880000 85601000 58541000 14714000 119710000 + 5642 289 5555 24744;24745;24746;24747;24748;24749;24750;24751 16391;16392;16393;16394;16395;16396;16397 16394 7 NMAQVTKALDK Unmodified 1217.6438 0.64380726 541 F8VUA2;Q9HD42;F8VVT7;F5H875 CHMP1A Charged multivesicular body protein 1a yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 91.856 84.111 3 0.0041313 2 57743 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.036 28.841 7855100 851940 1431700 2077500 1928400 253420 1312200 5643 541 5556 24752;24753;24754;24755;24756;24757 16398;16399 16398 2 NMGGPYGGGNYGPGGSGGSGGYGGR Unmodified 2188.8981 0.89807748 863 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 1 1 1 105.09 98.225 2;3 0.0079117 3 66857 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.13 33.368 13848000 0 6033500 1319000 830630 1801200 3863500 5644 863 5557 24758;24759;24760;24761;24762;24763 16400;16401;16402 16400 3 NMMAACDPRHGR Unmodified 1414.6016 0.60164165 1007;542 P68371;E7EWR1;Q5ST81;F5H8C9;Q9BVA1;Q13885;F5H894;B4DFH6;B4DJ43;P04350;F5H0I4;A8K854;C9JAA5;Q5SQY0;Q3ZCM7;Q13509;B3KS31;F8VUJ7;Q5JP53;F8VYX6;F8VW92;P07437 TUBB4B;TUBB;TUBB2B;TUBB2A;TUBB4A;TUBB8;TUBB3;TUBB6 Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-3 chain;Tubulin beta chain no no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 55.136 50.182 3 0.00747 2 35718 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.815 39.238 6026500 316570 838090 0 617540 163150 4091200 5645 1007;542 5558 24764;24765;24766;24767;24768 16403;16404 16403 2 NNAFPCQVNIKQK Unmodified 1559.7878 0.78784574 1533 Q9NQW6;Q9NQW6-2;H7C1K5 ANLN Actin-binding protein anillin yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 2 1 1 2 3 2 99.531 90.944 2;3 2.5747E-24 5 62122 20150910_Q1_SA_NiHu_Masterprac_group15_B 117.25 100.68 45154000 2956000 12065000 3172800 2814300 10097000 14050000 5646 1533 5559 24769;24770;24771;24772;24773;24774;24775;24776;24777;24778;24779 16405;16406;16407;16408;16409 16406 5 NNASTDYDLSDK Unmodified 1341.5685 0.56845329 905 P39023;G5E9G0;B5MCW2 RPL3 60S ribosomal protein L3 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 69.747 63.179 2 0.023949 1 49423 20150910_Q1_SA_NiHu_Masterprac_group15_C 50.222 37.954 2567600 0 400350 0 0 1067800 1099400 5647 905 5560 24780;24781;24782 16410 16410 1 NNFCGVGICYGSMNRQGPESR Unmodified 2402.0314 0.031416618 1105 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 129.23 128.62 3 0.016822 1 82222 20150910_Q1_SA_NiHu_Masterprac_group10_B 37.687 31.855 792800 0 792800 0 0 0 0 5648 1105 5561 24783 16411 16411 1 NNLEPILEGYISNLRK Unmodified 1872.0105 0.010511692 305 Q86Y46;CON__Q32MB2;Q86Y46-2;Q3SY84;CON__Q3SY84 KRT73;KRT71 Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 71 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 131.6 131.6 4 0.0044303 1 84593 20150910_Q1_SA_NiHu_Masterprac_group13_B 51.939 15.91 8060500 0 0 0 8060500 0 0 + 5649 305 5562 24784 16412 16412 0 NNLLNTKLEK Unmodified 1185.6717 0.67173657 547 Q99590-2;F8VXG7;Q99590;F8W028 SCAF11 Protein SCAF11 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 94.92 85.927 2 0.021917 1 58929 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.831 28.108 8284500 1777400 0 1227600 986890 1531600 2760900 5650 547 5563 24785;24786;24787;24788;24789 16413 16413 1 NNPDIPELHRPVVK Unmodified 1626.8842 0.88418897 565 F8WAJ0;Q9H8H2;Q9H8H2-2;B4E3G7;Q9H8H2-3;Q9H8H2-4 DDX31 Probable ATP-dependent RNA helicase DDX31 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 107.63 100.79 3 0.040471 1 66718 20150910_Q1_SA_NiHu_Masterprac_group13_B 39.394 15.997 6544200 0 0 0 905000 3009900 2629400 5651 565 5564 24790;24791;24792 16414 16414 1 NNPHYDPSSKEDNPK Unmodified 1740.7703 0.770341 1570 Q9P016;Q9P016-2 THYN1 Thymocyte nuclear protein 1 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 37.553 32.54 3;4 0.0042889 5 21948 20150910_Q1_SA_NiHu_Masterprac_group13_B 54.812 47.979 8871700 1232700 0 5302900 745600 0 1590500 5652 1570 5565 24793;24794;24795;24796;24797 16415;16416;16417;16418;16419 16415 5 NNRFSTPEQAAK Unmodified 1361.6688 0.66877646 838 P14866;A6NIT8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 56.446 49.146 3 0.002483 3 40257 20150910_Q1_SA_NiHu_Masterprac_group13_C 74.611 48.63 35179000 4871400 10315000 7299400 4046300 8647700 0 5653 838 5566 24798;24799;24800;24801;24802 16420;16421;16422 16421 3 NNRFSTPEQAAKNR Unmodified 1631.8128 0.81281494 838 P14866;A6NIT8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 2 2 51.558 47.14 3;4 0.0019795 3 33558 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.827 42.914 12484000 844570 6381400 1829800 1822000 0 1606300 5654 838 5567 24803;24804;24805;24806;24807;24808;24809;24810;24811 16423;16424;16425 16424 3 NNRQPYAVSELAGHQTSAESWGTGR Unmodified 2715.275 0.27495267 392 E7EWF1;P36578;H3BU31;B4DP82;H3BTP7 RPL4 60S ribosomal protein L4 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 127.86 125.08 4 3.3744E-65 1 84523 20150910_Q1_SA_NiHu_Masterprac_group15_B 112.47 95.326 13451000 0 1432900 0 0 0 12018000 5655 392 5568 24812;24813 16426 16426 1 NNSFTAPSTVGK Unmodified 1221.599 0.59896556 772 O95453-2;O95453-3;O95453;B4DSB0 PARN Poly(A)-specific ribonuclease PARN yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 86.094 76.844 2 0.020831 1 53080 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.612 30.834 4757700 0 817820 1102100 0 751950 2085800 5656 772 5569 24814;24815;24816;24817 16427 16427 1 NNTLTLPEELSKDK Unmodified 1600.8308 0.83081599 1492 Q9H582-2;Q9H582;F5H7T9 ZNF644 Zinc finger protein 644 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 131.09 119.61 3 0.0046584 2 85409 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.425 31.193 17429000 0 0 7243700 0 0 10186000 5657 1492 5570 24818;24819 16428;16429 16429 1 NNWEVSALSR Unmodified 1174.5731 0.57308516 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 122.91 120.28 2 0.0026422 2 77387 20150910_Q1_SA_NiHu_Masterprac_group10_B 100.69 72.51 12181000 0 2681200 0 0 0 9500000 5658 1012 5571 24820;24821 16430;16431 16431 2 NPNGPYPYTLK Unmodified 1262.6295 0.62953741 838 P14866;A6NIT8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 112.35 103.3 2 0.0013333 3 70576 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.112 69.426 15448000 1770500 3335700 2028800 1447500 1193100 5671800 5659 838 5572 24822;24823;24824;24825;24826;24827 16432;16433;16434 16432 3 NQAAIQGRPPYAASAEEVAK Unmodified 2070.0494 0.049416394 1566 Q9NZB2;Q9NZB2-6;Q9NZB2-4 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 107.65 98.849 3 0.00056812 3 67396 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.936 48.652 12710000 2598500 2027300 2105300 718580 1653400 3607200 5660 1566 5573 24828;24829;24830;24831;24832;24833 16435;16436;16437 16435 3 NQAIRQPEVQAAPKEK Unmodified 1805.9748 0.97479489 679 Q6PK04;I3L0U5 CCDC137 Coiled-coil domain-containing protein 137 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 65.327 58.25 3 6.8435E-22 4 42676 20150910_Q1_SA_NiHu_Masterprac_group10_C 102.15 78.792 19537000 3731900 1956900 2674500 2506700 6349300 2318000 5661 679 5574 24834;24835;24836;24837;24838;24839 16438;16439;16440;16441 16441 2 NQCLFTNTQCK Unmodified 1412.6177 0.61766887 184 B7Z367;Q9UL40;D6RJ07;Q9UL40-2;B7Z6B6;B7Z6Q2 ZNF346 Zinc finger protein 346 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 1 1 1 1 1 86.191 78.428 2 0.0018545 5 59037 20150910_Q1_SA_NiHu_Masterprac_group15_C 90.05 71.519 12009000 2039700 958270 1470200 986370 2457400 4097000 5662 184 5575 24840;24841;24842;24843;24844;24845;24846 16442;16443;16444;16445;16446 16443 5 NQCTQVVQER Unmodified 1260.5881 0.5880833 840 P15924;P15924-2 DSP Desmoplakin yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 53.18 45.21 2 0.01091 3 33911 20150910_Q1_SA_NiHu_Masterprac_group10_C 72.096 43.519 3849200 605700 0 1806500 713450 723530 0 5663 840 5576 24847;24848;24849;24850 16447;16448;16449 16449 3 NQDVSISNVQPK Unmodified 1327.6732 0.67319314 607 H0Y3K4;Q96EV2 RBM33 RNA-binding protein 33 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 89.51 81.831 2 0.0018734 5 62579 20150910_Q1_SA_NiHu_Masterprac_group13_C 84.734 40.487 14733000 842380 3070600 1833600 1221000 2826500 4938900 5664 607 5577 24851;24852;24853;24854;24855;24856 16450;16451;16452;16453;16454 16450 5 NQEEYKEVNFTSELR Unmodified 1884.8854 0.88537076 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 129.64 129.33 3 1.1823E-14 2 82609 20150910_Q1_SA_NiHu_Masterprac_group10_B 104.09 92.772 6606200 0 5555200 0 1051000 0 0 5665 1611 5578 24857;24858 16455;16456 16456 1 NQENGPVCSLR Unmodified 1272.5881 0.5880833 628 Q6JHV3;H0YMI4;Q9Y6I4;B3KMX7;H0YLB7;H0YKU8;F5H1A6;B4DWJ6 USP3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 3 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 67.353 65.965 2 0.0016364 3 45874 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.913 70.677 5671700 0 1571500 0 782610 0 3317600 5666 628 5579 24859;24860;24861;24862 16457;16458;16459 16459 3 NQENGPVCSLRDCLR Unmodified 1816.8308 0.83084954 628 Q6JHV3;H0YMI4;Q9Y6I4;B3KMX7;H0YLB7;H0YKU8;F5H1A6;B4DWJ6 USP3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 2 1 2 117.01 109.48 3 0.020617 2 74865 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.469 29.671 53893000 8800400 7443800 4714900 4941300 5423600 22568000 5667 628 5580 24863;24864;24865;24866;24867;24868;24869;24870 16460;16461 16460 1 NQGGYGGSSSSSSYGSGRRF Unmodified 1996.8623 0.8623439 537 H0YH80;P09651-3;F8VXY0;F8VRQ1;P09651-2;F8W6I7;P09651 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 76.079 68.618 3 0.0060745 1 47997 20150910_Q1_SA_NiHu_Masterprac_group10_B 50.966 50.966 25336000 3153300 4786200 2194800 2966900 6060100 6175100 5668 537 5581 24871;24872;24873;24874;24875;24876 16462 16462 1 NQHLVSQQKDPDTEEYRK Unmodified 2214.0665 0.066523021 827 P12270 TPR Nucleoprotein TPR yes yes 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 54.735 49.479 4 0.0016142 6 41353 20150910_Q1_SA_NiHu_Masterprac_group15_C 64.454 54.972 7456800 2311600 1181500 0 1034300 1435700 1493700 5669 827 5582 24877;24878;24879;24880;24881;24882 16463;16464;16465;16466;16467;16468 16465 6 NQIQDQEQLVSK Unmodified 1428.7209 0.72087161 936 P49454 CENPF Centromere protein F yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 88.618 81.665 2 0.0034658 2 55941 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.864 43.111 2160200 0 933510 316150 0 0 910510 5670 936 5583 24883;24884;24885 16469;16470 16470 2 NQKPSQVNGAPGSPTEPAGQK Unmodified 2091.0345 0.034494611 682 I3L1L3;Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 59.156 53.047 3 0.0017708 7 43385 20150910_Q1_SA_NiHu_Masterprac_group15_C 50.956 35.794 6943500 599960 1644500 655380 589580 1617100 1836900 5671 682 5584 24886;24887;24888;24889;24890;24891;24892 16471;16472;16473;16474;16475;16476;16477 16475 7 NQKPSQVNGAPGSPTEPAGQKQHQK Unmodified 2612.3055 0.30552451 682 I3L1L3;Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 45.858 39.872 4 0.0023295 5 29396 20150910_Q1_SA_NiHu_Masterprac_group10_C 42.289 32.143 7538200 1447600 0 2517700 1244600 896000 1432300 5672 682 5585 24893;24894;24895;24896;24897 16478;16479;16480;16481;16482 16482 5 NQLETAPPHELK Unmodified 1375.7096 0.70957864 180 B7WPF4;Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 24 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 84.633 80.354 3 0.013368 1 55279 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.005 17.477 5413300 1250500 1461100 0 0 0 2701700 5673 180 5586 24898;24899;24900 16483 16483 1 NQLRNNIRQQVLK Unmodified 1622.9329 0.93287049 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 80.078 73.343 4 0.02425 1 50878 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.653 24.593 3895600 0 920670 0 0 1012300 1962700 5674 1325 5587 24901;24902;24903 16484 16484 1 NQLSQNRGLGGIMVK Unmodified 1613.8672 0.86715869 754 O94776;Q68DB1 MTA2;DKFZp686F2281 Metastasis-associated protein MTA2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 118.41 110.42 3 0.0025132 1 75676 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.364 37.582 15995000 0 3236400 6220500 0 0 6538200 5675 754 5588 24904;24905;24906 16485 16485 1 NQLTSNPENTVFDAK Unmodified 1676.8006 0.8005785 823 P11021;B4DEF7 HSPA5 78 kDa glucose-regulated protein yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 127.08 117.6 2 7.7692E-230 6 77168 20150910_Q1_SA_NiHu_Masterprac_group10_C 177.63 153.12 88410000 34387000 8032800 26036000 3992100 8379900 7582200 5676 823 5589 24907;24908;24909;24910;24911;24912 16486;16487;16488;16489;16490;16491 16491 6 NQLVTPEPTSR Unmodified 1240.6412 0.64116473 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 80.627 73.247 2 0.036415 1 50837 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.448 23.468 6075100 0 1230500 770430 370900 1797200 1906100 5677 1109 5590 24913;24914;24915;24916;24917 16492 16492 1 NQMLIEEEVQKLK Unmodified 1600.8494 0.84944294 135 H0Y4K0;H0Y636;H0Y4E0;B4DW59;B7Z9U9;H0Y6Y4;Q9Y5K5-2;E9PGR0;Q9Y5K5-4;Q9Y5K5-3;Q9Y5K5;Q5LJA5;Q5LJA9 UCHL5 Ubiquitin carboxyl-terminal hydrolase isozyme L5 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 133.23 115.38 3 0.0038454 1 82278 20150910_Q1_SA_NiHu_Masterprac_group15_C 85.672 22.94 2038000 0 0 0 0 2038000 0 5678 135 5591 24918 16493 16493 0 NQMLMTPTSAPR Unmodified 1345.6482 0.64824072 1531 Q9NQS7-2;Q9NQS7 INCENP Inner centromere protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 105.84 102.38 2 0.034746 1 69927 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.069 18.638 629190 0 0 0 0 0 629190 5679 1531 5592 24919 16494 16494 1 NQQLDLCK Unmodified 1017.4913 0.49132937 1008 P78337;H0YJC8 PITX1 Pituitary homeobox 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 65.447 63.365 2 0.015503 1 44366 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.743 62.506 1278000 0 495710 0 0 0 782330 5680 1008 5593 24920;24921 16495 16495 1 NQQTLGSYECGICGK Unmodified 1713.7451 0.74505423 1195 Q5T7W0-2;B1ALC2;B5MDS3;Q5T7W0-3 ZNF618 Zinc finger protein 618 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 105.41 102.92 2 0.00067556 1 70208 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.632 71.63 1736400 0 474750 0 0 0 1261600 5681 1195 5594 24922;24923 16496 16496 1 NQSFASTHLNQNSSR Unmodified 1689.7819 0.78190874 767 O95235;B4DL79 KIF20A Kinesin-like protein KIF20A yes no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 66.111 59.152 3 1.6246E-05 3 41733 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.911 79.049 6120100 0 918830 556170 559600 1406100 2679400 5682 767 5595 24924;24925;24926;24927;24928 16497;16498;16499 16498 3 NQSLEGDTTKGTSEMSEK Unmodified 1940.8633 0.86331469 614 H0Y818;P40692;H0Y3I0;E9PCU2;B7Z821;B4DI13 MLH1 DNA mismatch repair protein Mlh1 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 70.918 63.59 3 0.0016149 4 44197 20150910_Q1_SA_NiHu_Masterprac_group13_B 58.461 49.46 15118000 1493400 1578100 2700100 2052100 3588700 3705500 5683 614 5596 24929;24930;24931;24932;24933;24934 16500;16501;16502;16503 16501 4 NQSLVEENEK Unmodified 1188.5622 0.5622457 768 O95239;O95239-2;Q2VIQ3 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 58.161 45.579 2 0.010869 1 37549 20150910_Q1_SA_NiHu_Masterprac_group13_C 72.2 45.451 2534900 0 0 2534900 0 0 0 5684 768 5597 24935 16504 16504 1 NQTSLLGEPPKEIR Unmodified 1580.8522 0.85222014 1522 Q9HCJ3-2;Q9HCJ3 RAVER2 Ribonucleoprotein PTB-binding 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 111.02 107.26 3 0.013886 1 73419 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.214 18.851 1882200 0 0 0 0 0 1882200 5685 1522 5598 24936 16505 16505 1 NQVALNPQNTVFDAK Unmodified 1657.8424 0.84238373 619 P08107;H0YG33 HSPA1A Heat shock 70 kDa protein 1A/1B yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 132.54 118.44 2 1.0787E-295 3 83455 20150910_Q1_SA_NiHu_Masterprac_group13_C 185.32 140.9 126390000 31548000 0 45012000 0 9002400 40827000 5686 619 5599 24937;24938;24939;24940 16506;16507;16508 16506 3 NQVAMNPTNTVFDAK Unmodified 1648.7879 0.78790532 824 P11142;E9PKE3;P11142-2;E9PNE6;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 131.43 121.93 2 0 6 86212 20150910_Q1_SA_NiHu_Masterprac_group15_B 191.06 164.29 234350000 43109000 29768000 52051000 16909000 15061000 77452000 5687 824 5600 24941;24942;24943;24944;24945;24946 16509;16510;16511;16512;16513;16514 16511 6 NQVAMNPTNTVFDAK Oxidation (M) 1664.7828 0.78281994 824 P11142;E9PKE3;P11142-2;E9PNE6;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 HSPA8 Heat shock cognate 71 kDa protein yes no 0 1 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 113.1 104.01 2 0.017266 2 70860 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.924 40.823 9287700 1229900 1217300 1501400 962670 1905100 2471300 5688 824 5600 24947;24948;24949;24950;24951;24952 16515;16516 16515 82 1 NQVAMNPTNTVFDAKR Unmodified 1804.889 0.88901635 824 P11142;E9PKE3;P11142-2;E9PNE6;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 117.51 112.94 3 0.0062024 1 77041 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.252 28.408 2356400 0 0 0 0 0 2356400 5689 824 5601 24953 16517 16517 1 NQVDSETHCHAER Unmodified 1581.659 0.65901641 1537 Q9NRW3 APOBEC3C DNA dC->dU-editing enzyme APOBEC-3C yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 27.789 23.566 3 0.01316 2 15987 20150910_Q1_SA_NiHu_Masterprac_group10_B 51.135 47.499 10411000 336470 6546400 1871600 0 363210 1293700 5690 1537 5602 24954;24955;24956;24957;24958 16518;16519 16519 2 NRAAAMANNLQK Unmodified 1300.667 0.66700232 334 H0Y4X3;E1P5S2;G3XAC6;Q14498-3;Q14498-2;Q14498 RBM39 RNA-binding protein 39 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 2 2 55.635 49.529 2;3 2.2226E-11 6 36088 20150910_Q1_SA_NiHu_Masterprac_group15_B 107.11 107.11 20489000 551180 3012300 1315400 993420 5215200 9401300 5691 334 5603 24959;24960;24961;24962;24963;24964;24965;24966;24967 16520;16521;16522;16523;16524;16525 16522 6 NREEFEDQSLEK Unmodified 1522.69 0.68996541 1061 Q12830-4;Q12830-2;Q12830;F5GXF5;F5H176 BPTF Nucleosome-remodeling factor subunit BPTF yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 77.128 69.846 3 0.0036668 3 48745 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.03 46.145 3685300 464020 1078000 981370 0 0 1162000 5692 1061 5604 24968;24969;24970;24971 16526;16527;16528 16528 3 NREELGFRPEYSASQLK Unmodified 2023.0123 0.012302606 815 P09874;F8WC10 PARP1 Poly [ADP-ribose] polymerase 1 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 2 2 122.4 112.93 3;4 0.0015689 6 80321 20150910_Q1_SA_NiHu_Masterprac_group13_C 57.703 32.517 86889000 15027000 13545000 20084000 5144600 9264000 23825000 5693 815 5605 24972;24973;24974;24975;24976;24977;24978;24979;24980;24981;24982;24983 16529;16530;16531;16532;16533;16534 16530 6 NRENCELSDHCIK Unmodified 1673.725 0.72498749 27 F5H101;Q76FK4-2;Q76FK4-4;A6NJK7;Q76FK4;F8WE42;Q76FK4-3 NOL8 Nucleolar protein 8 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 54.386 49.493 3 0.0022755 1 35357 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.345 61.834 4087000 452530 768500 0 440690 981070 1444200 5694 27 5606 24984;24985;24986;24987;24988 16535 16535 1 NRGFCFLEYEDHK Unmodified 1713.7569 0.75693954 731;715 O43390;O43390-2;E7ETM7;Q2L7G6;O60506-2;O60506;O60506-4;O60506-3;O60506-5 HNRNPR;SYNCRIP Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 131.55 113.8 3 0.0052067 1 80659 20150910_Q1_SA_NiHu_Masterprac_group15_C 61.167 49.935 1442200 0 0 0 0 1442200 0 5695 715;731 5607 24989 16536 16536 1 NRNAAFGQSGGAGSDSNSPGNVQPNSAPSVESHPVLEK Unmodified 3762.7582 0.75821977 559 F8W840;Q9BYJ9;Q9BYJ9-2;C9J8M5 YTHDF1 YTH domain family protein 1 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 113.87 108.26 4 0.00057129 2 74560 20150910_Q1_SA_NiHu_Masterprac_group15_B 23.79 19.757 11258000 0 1087200 0 5217100 2821900 2131700 5696 559 5608 24990;24991;24992;24993 16537;16538 16538 2 NRPDYVSEEEEDDEDFETAVK Unmodified 2515.0511 0.051051695 945 P49792;E9PGT0 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 129.94 129.33 3 0.00060329 2 82778 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.209 47.293 5420700 0 5420700 0 0 0 0 5697 945 5609 24994 16539;16540 16540 2 NRPPLPAGTNSK Unmodified 1250.6731 0.67313356 913;914 P42166;P42167;P42167-2;G5E972 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 54.482 47.061 3 0.021239 1 33669 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.612 28.925 2409900 0 611160 458860 0 499150 840730 5698 913;914 5610 24995;24996;24997;24998 16541 16541 1 NRPPLPAGTNSKGPPDFSSDEER Unmodified 2467.1728 0.17277901 913;914 P42166;P42167;P42167-2;G5E972 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 108.93 98.982 4 7.5412E-09 2 65630 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.773 63.855 7295600 0 2361100 1346200 0 1325500 2262800 5699 913;914 5611 24999;25000;25001;25002 16542;16543 16543 2 NRQEYDALAK Unmodified 1206.5993 0.59929991 1221 Q6I9Y2 THOC7 THO complex subunit 7 homolog yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 52.703 51.415 2 0.026497 1 36792 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.885 7.6151 1216400 0 426330 0 120470 0 669550 5700 1221 5612 25003;25004;25005 16544 16544 1 NRQTFLLQTTK Unmodified 1348.7463 0.7462985 754 O94776;Q68DB1 MTA2;DKFZp686F2281 Metastasis-associated protein MTA2 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 99.545 91.824 2;3 1.7085E-29 5 61571 20150910_Q1_SA_NiHu_Masterprac_group10_B 128.57 100.6 367460000 0 43729000 57384000 2457900 6403500 257480000 5701 754 5613 25006;25007;25008;25009;25010;25011;25012;25013;25014;25015 16545;16546;16547;16548;16549 16549 5 NRQTFLLQTTKLTR Unmodified 1718.9792 0.97915198 754 O94776;Q68DB1 MTA2;DKFZp686F2281 Metastasis-associated protein MTA2 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 2 130.21 112.22 3;4 4.86E-69 2 80858 20150910_Q1_SA_NiHu_Masterprac_group13_C 132.65 119.55 32715000 0 0 32715000 0 0 0 5702 754 5614 25016;25017 16550;16551 16550 2 NRTSFTQEQIEALEK Unmodified 1792.8955 0.89554151 877;878 P26367;G3V3Q9;E9PS79;G3V567;G3V5W7;E9PIX4;G3V4N4;G3V4M3;P26367-2 PAX6 Paired box protein Pax-6 no no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 123.03 122.43 3 0.0028119 1 78494 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.038 44.809 3587800 0 3587800 0 0 0 0 5703 877;878 5615 25018 16552 16552 1 NRYENVIIPR Unmodified 1272.6939 0.693869 1405 Q96L91-4;Q96L91-3;Q96L91-5;Q96L91-2;Q96L91 EP400 E1A-binding protein p400 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 101.94 98.88 3 0.030177 1 67416 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.532 39.866 825150 0 0 0 0 0 825150 5704 1405 5616 25019 16553 16553 1 NRYQLEIPENFTTR Unmodified 1779.8904 0.89039656 959 P52701;B4DF41;F5H2F9;F5H769;P52701-2 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.83 132.23 3 0.014637 1 85788 20150910_Q1_SA_NiHu_Masterprac_group10_B 47.639 20.384 4586000 0 4586000 0 0 0 0 5705 959 5617 25020 16554 16554 1 NSCVQQSDNLK Unmodified 1291.5827 0.58266357 1353 Q92576-2;Q92576 PHF3 PHD finger protein 3 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 41.809 39.527 2 0.013088 1 27317 20150910_Q1_SA_NiHu_Masterprac_group13_B 61.233 39.683 2287900 258560 1316900 0 388940 0 323550 5706 1353 5618 25021;25022;25023;25024 16555 16555 1 NSECDPTPSHRGQLNK Unmodified 1838.833 0.83295803 661 H7BZJ7;Q9BXW9-3;Q9BXW9-2;Q9BXW9 FANCD2 Fanconi anemia group D2 protein yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 39.249 34.394 3 0.0020811 3 27941 20150910_Q1_SA_NiHu_Masterprac_group13_C 58.626 41.833 3080100 386130 471780 547410 363040 655470 656280 5707 661 5619 25025;25026;25027;25028;25029;25030 16556;16557;16558 16557 3 NSEKEQDSEVSEDTKSEEK Unmodified 2196.9506 0.95060937 1365 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 36.268 31.204 4 0.012755 1 25076 20150910_Q1_SA_NiHu_Masterprac_group13_C 39.585 39.585 3828200 560440 0 1663000 538470 554920 511340 5708 1365 5620 25031;25032;25033;25034;25035 16559 16559 1 NSFRYNGLIHRK Unmodified 1503.8059 0.80587907 926 P46779;C9JB50;G5E9L2;H0YLP6;H0YMF4;P46779-2;E9PB24;H0YKD8 RPL28 60S ribosomal protein L28 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 79.9 74.135 3 0.011856 1 51272 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.749 49.418 3488700 0 0 0 792190 1490600 1206000 5709 926 5621 25036;25037;25038 16560 16560 1 NSGAEAAQLSER Unmodified 1231.5793 0.57929275 1187 Q5SYE7-2;Q5SYE7 NHSL1 NHS-like protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 56.766 52.455 2 0.0044546 1 37411 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.043 31.153 451650 127210 0 0 0 0 324440 5710 1187 5622 25039;25040 16561 16561 1 NSGFRRSDDMFTFHGPGK Unmodified 2054.9381 0.93809181 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 117.98 110.55 4 0.0049485 1 79525 20150910_Q1_SA_NiHu_Masterprac_group13_C 46.324 37.461 11349000 0 0 5336600 2518500 0 3493900 5711 945 5623 25041;25042;25043 16562 16562 1 NSGPLGTEMNTGFSSEVK Unmodified 1853.8465 0.84654241 1623 Q9UQ35;F5GWZ7;Q9UQ35-2;I3L2L6 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.32 131.72 2 4.2455E-46 1 85220 20150910_Q1_SA_NiHu_Masterprac_group10_B 118.66 103.5 6310700 0 6310700 0 0 0 0 5712 1623 5624 25044 16563 16563 1 NSIDASEEKPVMR Unmodified 1474.7086 0.70859237 1540 Q9NRZ9-6;Q9NRZ9-5;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9;Q9NRZ9-8;Q9NRZ9-7;B1ALG6 HELLS Lymphoid-specific helicase yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 74.901 67.473 3 9.3433E-47 6 47026 20150910_Q1_SA_NiHu_Masterprac_group15_B 128.68 101.53 6510400 455140 927230 1121200 449970 796510 2760400 5713 1540 5625 25045;25046;25047;25048;25049;25050 16564;16565;16566;16567;16568;16569 16565 6 NSLDSFGGRNQGGSSWEAPYSR Unmodified 2371.0577 0.057749249 1177 Q5BKZ1 ZNF326 DBIRD complex subunit ZNF326 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 131.22 128.44 3 1.6881E-06 2 86387 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.536 54.644 5727500 0 3174900 0 0 0 2552600 5714 1177 5626 25051;25052 16570;16571 16570 2 NSLKIDNLDVNR Unmodified 1399.7419 0.7419414 741 O75475 PSIP1 PC4 and SFRS1-interacting protein yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 107.78 104.22 3 0.039592 1 71286 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.829 25.862 793050 0 0 0 0 0 793050 5715 741 5627 25053 16572 16572 1 NSLNDCSNQVILAK Unmodified 1574.7723 0.77225526 426 E9PFZ0;P38398-4;P38398-2;P38398;E9PFC7;E7EP70;F8W8H7;E7EMP0;H0Y850 BRCA1 Breast cancer type 1 susceptibility protein yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 109.01 101.03 2 0.0021642 3 68764 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.038 50.529 9598000 0 2140000 1470500 900570 1512800 3574100 5716 426 5628 25054;25055;25056;25057;25058 16573;16574;16575 16573 2 NSLSNSSGASADAGSTHISSR Unmodified 2004.9097 0.90968803 857 P20719 HOXA5 Homeobox protein Hox-A5 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 67.918 59.219 3 8.8004E-23 2 41593 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.621 97.621 12034000 0 2769400 3032200 0 743210 5488700 5717 857 5629 25059;25060;25061;25062 16576;16577 16576 2 NSLTSKDPDIK Unmodified 1216.6299 0.62993134 1119 Q14974 KPNB1 Importin subunit beta-1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 62.379 53.882 2 0.01667 1 38775 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.089 17.922 3163500 0 2757200 406240 0 0 0 5718 1119 5630 25063;25064 16578 16578 1 NSLTSKDPDIKAQYQQR Unmodified 1991.0072 0.007217228 1119 Q14974 KPNB1 Importin subunit beta-1 yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 2 2 2 2 83.908 75.987 3;4 0.0022617 2 59386 20150910_Q1_SA_NiHu_Masterprac_group13_C 77.068 64.29 11554000 0 1932500 2956000 2058500 2303800 2302900 5719 1119 5631 25065;25066;25067;25068;25069;25070;25071;25072;25073 16579;16580 16580 2 NSLYDMAR Unmodified 968.43857 0.43856552 1457 Q9BWF3;E9PB51;Q9BQ04;B0LM41;H0YDG8 RBM4;RBM4B;RBM14 RNA-binding protein 4;RNA-binding protein 4B;RNA-binding protein 14 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 100.51 92.412 2 0.012377 3 63199 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.601 62.396 16495000 676460 2464600 3167800 660290 1695400 7830700 5720 1457 5632 25074;25075;25076;25077;25078;25079 16581;16582;16583 16581 3 NSMPASSFQQQK Unmodified 1351.619 0.61904908 186 B7Z500;Q9Y383-2;Q9Y383;B7Z4Q3 LUC7L2;C7orf55 Putative RNA-binding protein Luc7-like 2;UPF0562 protein C7orf55 no no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 76.084 67.586 2 0.0024353 1 47096 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.611 55.801 1868700 0 0 0 0 401590 1467200 5721 186 5633 25080;25081 16584 16584 1 NSNLVGAAHEELQQSR Unmodified 1751.8551 0.85507368 783 P02545;P02545-3;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q3BDU5;Q5TCJ4;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 2 2 108.61 99.008 2;3 1.3264E-26 7 66530 20150910_Q1_SA_NiHu_Masterprac_group10_C 107.13 83.639 33379000 4622300 4999000 3689500 764750 5480400 13823000 5722 783 5634 25082;25083;25084;25085;25086;25087;25088;25089;25090;25091;25092 16585;16586;16587;16588;16589;16590;16591 16591 7 NSPEDLGLSLTGDSCK Unmodified 1691.7672 0.76722946 1063 Q12888;Q12888-2;A6NNK5;F8VY86;C9JXV0 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 132.72 132.42 2 6.5997E-07 1 85609 20150910_Q1_SA_NiHu_Masterprac_group10_B 91.317 60.833 46734000 0 38224000 0 8509900 0 0 5723 1063 5635 25093;25094 16592 16592 1 NSPGSQVASNPR Unmodified 1212.5847 0.58471248 146 Q9H0D6-2;B4DZC3;Q9H0D6 XRN2 5'-3' exoribonuclease 2 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 41.109 35.182 2 0.0021235 2 24759 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.89 47.713 3244000 310470 897040 1044100 0 324110 668320 5724 146 5636 25095;25096;25097;25098;25099 16593;16594 16594 2 NSPGSQVASNPRQAAYEMR Unmodified 2061.965 0.96503484 146 Q9H0D6-2;B4DZC3;Q9H0D6 XRN2 5'-3' exoribonuclease 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 96.037 88.437 3 0.0045086 1 60756 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.892 31.497 13567000 0 1772500 1807400 2056100 3539200 4391600 5725 146 5637 25100;25101;25102;25103;25104 16595 16595 1 NSQLFAASQK Unmodified 1092.5564 0.55637247 1628 Q9Y232-2;Q9Y232 CDYL Chromodomain Y-like protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 74.203 69.49 2 0.02723 1 48191 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.511 35.825 1657600 378690 0 0 0 0 1278900 5726 1628 5638 25105;25106 16596 16596 1 NSQVRLPLGTLSK Unmodified 1411.8147 0.81471242 709 O43148;O43148-2;F5H2D9 RNMT mRNA cap guanine-N7 methyltransferase yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 1 131.3 119.25 2;3 2.2213E-09 6 77828 20150910_Q1_SA_NiHu_Masterprac_group10_C 104.81 69.141 141750000 69534000 394390 24270000 10067000 7014200 30466000 5727 709 5639 25107;25108;25109;25110;25111;25112;25113;25114;25115 16597;16598;16599;16600;16601;16602 16601 5 NSSGPQSGWMK Unmodified 1177.5186 0.51860675 547 Q99590-2;F8VXG7;Q99590 SCAF11 Protein SCAF11 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 82.731 75.17 2 0.0018924 3 58441 20150910_Q1_SA_NiHu_Masterprac_group13_C 89.9 69.91 8983100 758170 749940 1222800 715600 2289800 3246900 5728 547 5640 25116;25117;25118;25119;25120;25121 16603;16604;16605 16603 1 NSSPEPQALTPSSK Unmodified 1441.7049 0.7048872 1018 P98168;P98169 ZXDA;ZXDB Zinc finger X-linked protein ZXDA;Zinc finger X-linked protein ZXDB yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 73.47 71.387 2 0.0038587 1 49634 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.626 42.277 1474300 0 609450 0 0 0 864840 5729 1018 5641 25122;25123 16606 16606 1 NSSSEQLFSSAR Unmodified 1311.6055 0.6055075 280 C9K0Y1;Q96GN5-4;Q96GN5-2;Q96GN5;C9IZR6 CDCA7L Cell division cycle-associated 7-like protein yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 89.503 87.42 2 0.011869 2 59348 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.434 41.491 2650700 0 751260 0 0 0 1899400 5730 280 5642 25124;25125 16607;16608 16608 2 NSSSSGTSLLTPK Unmodified 1277.6463 0.64630969 1560 Q9NXV6 CDKN2AIP CDKN2A-interacting protein yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 88.147 79.494 2 3.0237E-24 2 55066 20150910_Q1_SA_NiHu_Masterprac_group10_C 116.9 116.9 39447000 5355000 0 6116000 7715900 10243000 10017000 5731 1560 5643 25126;25127;25128;25129;25130 16609;16610 16610 2 NSSTEPKGFTECEMTK Unmodified 1844.7921 0.792064 1533 Q9NQW6 ANLN Actin-binding protein anillin yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 85.433 77.855 3 0.0057927 4 53610 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.729 39.936 24054000 2538100 2752900 5814400 3788500 3631400 5528800 5732 1533 5644 25131;25132;25133;25134;25135;25136 16611;16612;16613;16614 16612 4 NSSTIIQNPVETPK Unmodified 1526.794 0.79403655 904 P38432 COIL Coilin yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 116.41 107.67 2 0.0011073 6 70651 20150910_Q1_SA_NiHu_Masterprac_group13_B 71.879 59.562 26565000 0 4792100 2698500 1239900 6554100 11281000 5733 904 5645 25137;25138;25139;25140;25141;25142;25143 16615;16616;16617;16618;16619;16620 16615 5 NSSTIIQNPVETPKK Unmodified 1654.889 0.88899957 904 P38432 COIL Coilin yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 98.196 90.15 3 4.9604E-56 5 61701 20150910_Q1_SA_NiHu_Masterprac_group15_B 126.56 81.217 50740000 4259600 8890400 6587100 3351800 8348800 19302000 5734 904 5646 25144;25145;25146;25147;25148;25149 16621;16622;16623;16624;16625 16623 5 NSTADISIGEEER Unmodified 1419.6478 0.64776625 1536 Q9NRL2-2;Q9NRL2;F5H239 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 92.671 87.494 2 0.018793 3 59817 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.298 36.376 2578900 0 701780 0 194030 585120 1098000 5735 1536 5647 25150;25151;25152;25153 16626;16627;16628 16626 2 NSTEFSQMEK Unmodified 1199.5129 0.51285267 27 F5H101;Q76FK4-2;Q76FK4-4;A6NJK7;Q76FK4;F8WE42;Q76FK4-3;F5GWN9 NOL8 Nucleolar protein 8 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 79.489 68.611 2 0.012231 4 48337 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.412 43.263 12303000 1702300 1864600 3395800 0 5339900 0 5736 27 5648 25154;25155;25156;25157 16629;16630;16631;16632 16631 4 NSTSRNPSGINDDYGQLK Unmodified 1964.9188 0.91879615 736 O60934 NBN Nibrin yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 92.35 84.504 3 1.3754E-22 5 57408 20150910_Q1_SA_NiHu_Masterprac_group13_B 106.35 85.406 19755000 2383500 3678800 3523400 1644600 3318500 5206200 5737 736 5649 25158;25159;25160;25161;25162;25163 16633;16634;16635;16636;16637 16633 5 NSVERPAEPVAGAATPSLVEQQK Unmodified 2377.2238 0.22375194 1447 Q9BTC0 DIDO1 Death-inducer obliterator 1 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 129.27 113.58 3 0.003828 2 74979 20150910_Q1_SA_NiHu_Masterprac_group10_C 46.818 26.884 1886700 1886700 0 0 0 0 0 5738 1447 5650 25164 16638;16639 16638 2 NSYHPECLGPNYPTKPTK Unmodified 2101.9891 0.98912432 464 Q03164-2;Q03164;E9PQG7;H7BYJ6 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 95.028 85.778 4 0.026143 1 63626 20150910_Q1_SA_NiHu_Masterprac_group15_C 37.157 25.089 1200800 0 0 0 0 549540 651240 5739 464 5651 25165;25166 16640 16640 1 NSYNNSQAPSPGLGSK Unmodified 1619.754 0.75396265 1592 Q9UHB7 AFF4 AF4/FMR2 family member 4 yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 2 1 1 77.29 68.441 2 8.5047E-38 4 52915 20150910_Q1_SA_NiHu_Masterprac_group15_C 117.18 102.19 5529700 2199200 1037800 0 0 2292700 0 5740 1592 5652 25167;25168;25169;25170 16641;16642;16643;16644 16642 4 NTAGAQPQDDSIGGR Unmodified 1485.6808 0.68079771 1122 Q14CA3;Q14669;B4DYJ6;G5E9G6;C9JLD7;C9JLJ5;C9JSX9;F8W9P3 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 57.025 50.733 2 1.7771E-13 2 41397 20150910_Q1_SA_NiHu_Masterprac_group15_C 103.66 74.867 2765000 244650 507280 0 0 770310 1242700 5741 1122 5653 25171;25172;25173;25174 16645;16646 16645 2 NTAGAQPQDDSIGGRSHLGQAK Unmodified 2207.0679 0.067920004 1122 Q14CA3;B4DYJ6;G5E9G6;C9JLD7 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 2 1 68.906 60.52 4 0.016181 2 42383 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.436 48.862 8323100 856680 786090 1516000 996260 2061000 2107100 5742 1122 5654 25175;25176;25177;25178;25179;25180;25181 16647;16648 16647 1 NTAMDAQEALAR Unmodified 1289.6034 0.60339901 333 H0YGP9;E1B6W4;F5GXM2;Q7L4I2-2;Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 95.316 90.064 2 0.0017881 2 61620 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.894 47.005 4666900 0 594610 0 373390 1316300 2382600 5743 333 5655 25182;25183;25184;25185 16649;16650 16650 2 NTAPDNGPILLQAQTTQR Unmodified 1936.9967 0.99665254 1058 Q12788 TBL3 Transducin beta-like protein 3 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 127.52 125.04 2 5.1854E-74 1 84912 20150910_Q1_SA_NiHu_Masterprac_group15_B 128.94 106.51 7647400 0 0 0 238810 0 7408600 5744 1058 5656 25186;25187 16651 16651 1 NTAPDNGPILLQAQTTQRCHDK Unmodified 2477.2081 0.20811866 1058 Q12788 TBL3 Transducin beta-like protein 3 yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 2 2 2 1 108.34 98.612 3;4 0.0063568 2 71050 20150910_Q1_SA_NiHu_Masterprac_group15_C 43.326 25.314 11297000 449190 598380 5058200 1040100 2685600 1465700 5745 1058 5657 25188;25189;25190;25191;25192;25193;25194;25195;25196 16652;16653 16652 2 NTASQNSILEEGETK Unmodified 1619.7639 0.76385864 42 A8MTM6;Q15398;Q15398-1 DLGAP5 Disks large-associated protein 5 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 92.313 84.468 2 0.008098 3 57347 20150910_Q1_SA_NiHu_Masterprac_group13_B 48.899 34.622 12667000 792830 3281000 2112500 572700 2329600 3578200 5746 42 5658 25197;25198;25199;25200;25201;25202 16654;16655;16656 16654 3 NTDEMVELR Unmodified 1105.5074 0.50737336 984 P61978-3;P61978-2;B4DFF1;P61978;Q5T6W5;Q5T6W2 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 100.57 92.166 2 2.8902E-19 8 62729 20150910_Q1_SA_NiHu_Masterprac_group10_C 126.39 92.627 48460000 9440600 12637000 3716200 2700200 5129900 14836000 5747 984 5659 25203;25204;25205;25206;25207;25208;25209 16657;16658;16659;16660;16661;16662;16663;16664 16664 8 NTENNDVEISETK Unmodified 1491.6689 0.66889562 1201 Q5UIP0-2;Q5UIP0;H7C2B5 RIF1 Telomere-associated protein RIF1 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 63.179 56.945 2 0.0015443 3 45495 20150910_Q1_SA_NiHu_Masterprac_group15_C 88.075 64.561 3450400 0 780410 0 0 699610 1970400 5748 1201 5660 25210;25211;25212 16665;16666;16667 16666 3 NTETALDNKPCGPQCYQHLEGAK Unmodified 2630.1853 0.1853343 1149 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 EZH2 Histone-lysine N-methyltransferase EZH2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 97.344 94.786 4 0.013367 1 64742 20150910_Q1_SA_NiHu_Masterprac_group15_B 36.454 26.308 2307400 0 0 0 0 0 2307400 5749 1149 5661 25213 16668 16668 1 NTGIICTIGPASR Unmodified 1358.6976 0.69763375 837 P14618;H3BQ34;E9PF79;H3BTN5;P14618-2;H3BT25;H3BUW1;H3BTJ2;H3BU13 PKM Pyruvate kinase PKM;Pyruvate kinase yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 124.69 114.39 2 1.0752E-59 3 78924 20150910_Q1_SA_NiHu_Masterprac_group15_B 131.35 71.191 17484000 0 2104500 2746200 0 6853300 5779800 5750 837 5662 25214;25215;25216;25217 16669;16670;16671 16670 2 NTGVILANDANAER Unmodified 1456.727 0.72701962 923 P46087;Q3KQS4;P46087-2;Q05BA7 NOP2 Putative ribosomal RNA methyltransferase NOP2 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 99.137 89.686 2 0.02722 1 66061 20150910_Q1_SA_NiHu_Masterprac_group15_C 50.874 35.488 2257700 0 0 0 0 1376300 881370 5751 923 5663 25218;25219 16672 16672 0 NTGVILANDANAERLK Unmodified 1697.906 0.90604662 923 P46087;Q3KQS4;P46087-2;Q05BA7 NOP2 Putative ribosomal RNA methyltransferase NOP2 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 115.82 105.42 2 0.021947 1 74698 20150910_Q1_SA_NiHu_Masterprac_group15_C 46.249 32.83 2135300 0 0 0 0 1653500 481840 5752 923 5664 25220;25221 16673 16673 1 NTHCSSLPHYQK Unmodified 1470.6674 0.66739625 52 P43243;A8MXP9;B3KM87;P43243-2;Q68E03 MATR3;DKFZp686L22104 Matrin-3 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 48.115 42.738 3 0.039456 1 34934 20150910_Q1_SA_NiHu_Masterprac_group13_C 42.243 22.112 7248300 1333700 2587600 2242200 0 0 1084800 5753 52 5665 25222;25223;25224;25225 16674 16674 1 NTHCSSLPHYQKLK Unmodified 1711.8464 0.84642325 52 P43243;A8MXP9;B3KM87;P43243-2;Q68E03 MATR3;DKFZp686L22104 Matrin-3 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 58.555 51.187 3 0.0061984 1 38058 20150910_Q1_SA_NiHu_Masterprac_group10_C 54.871 38.606 607380 607380 0 0 0 0 0 5754 52 5666 25226 16675 16675 1 NTIAYDRYIK Unmodified 1255.6561 0.65608651 220 H7C4H8;H0YAE8;Q14493-2;E7EUV9;C9IY53;Q14493;F8W8D3 SLBP Histone RNA hairpin-binding protein yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 106.78 97.076 2 9.2689E-15 2 64631 20150910_Q1_SA_NiHu_Masterprac_group10_B 121.36 84.217 2992900 0 1904200 1088600 0 0 0 5755 220 5667 25227;25228;25229 16676;16677 16677 2 NTKIPCKSPPPELTDTATSTK Unmodified 2285.1573 0.15731186 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 95.747 87.132 3;4 3.6186E-33 12 59710 20150910_Q1_SA_NiHu_Masterprac_group15_B 104.68 89.882 83268000 10904000 19425000 12859000 4684100 13314000 22082000 5756 919;920 5668 25230;25231;25232;25233;25234;25235;25236;25237;25238;25239;25240;25241;25242 16678;16679;16680;16681;16682;16683;16684;16685;16686;16687;16688;16689 16683 12 NTKSPQPVNDDNIRETK Unmodified 1954.9708 0.97083172 481 Q86TC9-2;F5H7I9;Q86TC9;F5GWA6 MYPN Myopalladin yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 57.537 50.443 4 0.0074926 1 41701 20150910_Q1_SA_NiHu_Masterprac_group13_C 44.598 34.686 3123000 0 0 954420 562680 933070 672830 5757 481 5669 25243;25244;25245;25246 16690 16690 1 NTLETSSLNFK Unmodified 1252.6299 0.62993134 1097 Q14151;B4DU53 SAFB2 Scaffold attachment factor B2 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 120.19 114.38 2 2.4785E-69 3 79504 20150910_Q1_SA_NiHu_Masterprac_group15_C 143 94.394 120450000 0 8013700 0 347240 97322000 14771000 5758 1097 5670 25247;25248;25249;25250 16691;16692;16693 16692 3 NTLGSGVTGAANVAK Unmodified 1358.7154 0.7153923 1413 Q96Q06-2 PLIN4 Perilipin-4 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 96.464 88.824 2 1.4567E-70 2 60894 20150910_Q1_SA_NiHu_Masterprac_group15_B 134.88 73.647 11147000 0 1910900 1342100 794060 1895100 5204600 5759 1413 5671 25251;25252;25253;25254;25255 16694;16695 16694 2 NTMFSSQAEDELEPARK Unmodified 1951.8946 0.89455524 1193 Q5T670;Q7L590-2;Q7L590 MCM10 Protein MCM10 homolog yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 130.28 112.53 3 0.0004885 1 79468 20150910_Q1_SA_NiHu_Masterprac_group15_C 66.738 47.065 3413900 0 0 0 0 3413900 0 5760 1193 5672 25256 16696 16696 0 NTNAAEESLPEIQK Unmodified 1542.7526 0.75256567 419 E9PD53;Q9NTJ3;F5H0U7 SMC4 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 112.58 102.88 2 0.020765 1 68086 20150910_Q1_SA_NiHu_Masterprac_group10_B 44.925 34.854 1332000 0 1020000 312020 0 0 0 5761 419 5673 25257;25258 16697 16697 1 NTNAETRETLQELYK Unmodified 1808.8905 0.89045614 1079 Q13356;Q13356-2;E7EW80 PPIL2 Peptidyl-prolyl cis-trans isomerase-like 2 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 118.27 110.34 3 0.00051153 4 75758 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.209 48.613 19862000 1371600 3164200 3367300 1544800 0 10414000 5762 1079 5674 25259;25260;25261;25262;25263 16698;16699;16700;16701 16700 4 NTNSVPETAPAAIPETK Unmodified 1738.8737 0.87374344 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 109.29 102.17 2 0.0017201 4 67391 20150910_Q1_SA_NiHu_Masterprac_group13_B 57.936 44.835 30203000 0 0 9544500 4617500 0 16041000 5763 352;968 5675 25264;25265;25266 16702;16703;16704;16705 16703 4 NTNSVPETAPAAIPETKR Unmodified 1894.9749 0.97485447 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1 101.45 91.935 3 0.0006795 6 62004 20150910_Q1_SA_NiHu_Masterprac_group13_B 67.418 67.418 36159000 29624000 1258400 1623900 736670 1567900 1347400 5764 352;968 5676 25267;25268;25269;25270;25271;25272;25273;25274 16706;16707;16708;16709;16710;16711 16706 6 NTPYQAPVRR Unmodified 1200.6364 0.63635412 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 56.681 50.289 3 0.0014371 5 41287 20150910_Q1_SA_NiHu_Masterprac_group15_C 97.431 70.988 7729300 878940 824730 1551400 686980 1388200 2399000 5765 531 5677 25275;25276;25277;25278;25279;25280 16712;16713;16714;16715;16716 16715 5 NTSAAIQAYRHAIEVNK Unmodified 1884.9806 0.98060855 1598 Q9UJX2;Q9UJX2-3 CDC23 Cell division cycle protein 23 homolog yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 117.43 112.86 3 0.0033208 1 77058 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.073 36.25 2618000 0 0 0 0 0 2618000 5766 1598 5678 25281 16717 16717 1 NTVTVRGYSQESTKK Unmodified 1696.8744 0.87441214 1180 Q5FWF5;Q5FWF5-2 ESCO1 N-acetyltransferase ESCO1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 46.324 45.37 3 0.0025391 1 32584 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.759 47.122 2123400 0 0 0 0 0 2123400 5767 1180 5679 25282 16718 16718 1 NTVVATGGYGR Unmodified 1093.5516 0.55162144 407 E9PBJ5;P31040;D6RFM5 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 66.959 61.378 2 0.012879 2 43088 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.48 26.785 3528500 0 0 749100 331540 0 2447900 5768 407 5680 25283;25284;25285 16719;16720 16720 2 NVADDTRSEDLRR Unmodified 1545.7495 0.74954598 743 O75494-5;Q5JRI1;O75494-4;Q5JRI3;O75494-3;O75494-2;O75494 SRSF10 Serine/arginine-rich splicing factor 10 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 53.784 48.931 3 0.034862 1 34827 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.343 35.929 18419000 206920 8920700 0 1451900 3515700 4323300 5769 743 5681 25286;25287;25288;25289;25290 16721 16721 1 NVALLSQLYHSPARR Unmodified 1723.9482 0.94818621 1146 Q15717 ELAVL1 ELAV-like protein 1 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 132.13 122.63 3 0.00063564 4 87383 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.314 38.747 755240000 26649000 43055000 11373000 1990000 10844000 661330000 5770 1146 5682 25291;25292;25293;25294;25295;25296 16722;16723;16724;16725 16722 4 NVASPSRIQQIIEGK Unmodified 1638.9053 0.90531834 336 O60313;E5KLK1;E5KLJ6;E5KLJ9;O60313-2;E5KLJ5 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.2 131.59 3 0.00072881 1 85176 20150910_Q1_SA_NiHu_Masterprac_group10_B 79.875 47.345 6273100 0 6273100 0 0 0 0 5771 336 5683 25297 16726 16726 1 NVCEQGTSTVDQNFGK Unmodified 1782.7843 0.7842765 1063 Q12888;Q12888-2;A6NNK5;F8VY86 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 94.749 88.522 2 6.2901E-18 7 66609 20150910_Q1_SA_NiHu_Masterprac_group13_C 101.42 92.119 13321000 1060800 4607800 1879700 1081300 0 4691400 5772 1063 5684 25298;25299;25300;25301;25302;25303 16727;16728;16729;16730;16731;16732;16733 16729 7 NVESTNSNAYTQR Unmodified 1482.6699 0.66989867 1265 Q86V48-2;Q86V48-3;Q86V48 LUZP1 Leucine zipper protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 54.799 48.743 2 0.00553 1 34806 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.55 46.37 4894000 0 849560 613500 460540 670980 2299400 5773 1265 5685 25304;25305;25306;25307;25308 16734 16734 1 NVETHTGSLIEQLTTEK Unmodified 1898.9585 0.9585357 1066 Q12986;Q12986-2;F5GXD0;Q12986-3 NFX1 Transcriptional repressor NF-X1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 133.22 132.62 3 0.031351 1 86210 20150910_Q1_SA_NiHu_Masterprac_group10_B 53.453 35.496 0 0 0 0 0 0 0 5774 1066 5686 25309 16735 16735 1 NVETKPDKGISCK Unmodified 1474.745 0.74497787 42 A8MTM6;Q15398;Q15398-1 DLGAP5 Disks large-associated protein 5 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 35.633 32.523 3 0.027042 1 26060 20150910_Q1_SA_NiHu_Masterprac_group13_C 56.956 34.378 3905300 0 1368900 1926400 398180 0 211730 5775 42 5687 25310;25311;25312;25313 16736 16736 1 NVFSSSGTSFSGRK Unmodified 1459.7056 0.7055559 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 2 2 2 2 94.95 85.521 2;3 0.00057287 6 58592 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.898 53.654 12719000 577940 2656400 1573300 0 2460400 5450900 5776 531 5688 25314;25315;25316;25317;25318;25319;25320;25321;25322 16737;16738;16739;16740;16741;16742 16737 5 NVFSSSGTSFSGRKIK Unmodified 1700.8846 0.8845829 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1 100.51 91.117 3 0.0073199 3 68523 20150910_Q1_SA_NiHu_Masterprac_group13_C 57.414 39.001 14545000 1091200 6921000 2874400 1334600 1160900 1163100 5777 531 5689 25323;25324;25325;25326;25327;25328;25329 16743;16744;16745 16744 3 NVGQFSGFPFEKGSVQYKK Unmodified 2146.0847 0.084739268 901 P35659;P35659-2;B4DFG0;D6R9L5;D6RDA2;H0Y8X0 DEK Protein DEK yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 133.06 117.37 3 0.0048712 1 78745 20150910_Q1_SA_NiHu_Masterprac_group10_C 53.255 29.226 5545400 5545400 0 0 0 0 0 5778 901 5690 25330 16746 16746 1 NVLLNSLQK Unmodified 1027.6026 0.60259438 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 116.56 114.74 2 0.012883 1 74459 20150910_Q1_SA_NiHu_Masterprac_group10_B 80.688 54.246 8672100 0 2308700 0 1591100 0 4772400 5779 1325 5691 25331;25332;25333 16747 16747 1 NVLNHMTHCQSGK Unmodified 1524.6926 0.69256515 1053 Q09472 EP300 Histone acetyltransferase p300 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 52.053 47.829 3 0.0018594 1 34056 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.628 29.246 2179800 0 350960 0 535720 505080 788060 5780 1053 5692 25334;25335;25336;25337 16748 16748 1 NVMVEPHRHEGVFICR Unmodified 1978.9618 0.96180414 862 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 2 2 101.64 93.876 3;4 0.00078486 4 63974 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.386 62.011 45750000 0 0 0 3827900 22146000 19776000 5781 862 5693 25338;25339;25340;25341;25342 16749;16750;16751;16752 16749 4 NVMVEPHRHEGVFICRGK Unmodified 2164.0782 0.078230877 862 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 90.432 81.936 4 0.017462 1 62834 20150910_Q1_SA_NiHu_Masterprac_group13_C 38.808 25.654 8438500 0 0 3622700 4815700 0 0 5782 862 5694 25343;25344 16753 16753 1 NVQLVCSEHGLDNK Unmodified 1611.7675 0.76750423 1415 Q96QE3 ATAD5 ATPase family AAA domain-containing protein 5 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 88.663 86.681 3 0.0075993 1 59386 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.726 33.536 2952100 0 1025500 0 0 0 1926600 5783 1415 5695 25345;25346 16754 16754 1 NVRGEFTYYEIQDNTGK Unmodified 2032.949 0.94903365 1155 Q16666-3;Q16666-2;Q16666;H3BLV7;E7EPR3 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 128.49 120.23 3 3.1062E-21 2 80071 20150910_Q1_SA_NiHu_Masterprac_group15_C 101.28 81.027 20546000 0 1081000 6364200 2819700 5411500 4869200 5784 1155 5696 25347;25348;25349;25350;25351 16755;16756 16756 2 NVSCSSLSNSNSEPAK Unmodified 1679.7421 0.74207734 1535 Q9NR48-2;Q9NR48 ASH1L Histone-lysine N-methyltransferase ASH1L yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 58.257 56.275 2 0.0084668 1 39582 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.249 34.709 906100 0 396370 0 0 0 509730 5785 1535 5697 25352;25353 16757 16757 1 NVSEELDRTPPEVSK Unmodified 1698.8424 0.84244331 1136 Q15393-3;Q15393 SF3B3 Splicing factor 3B subunit 3 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 2 1 2 100.12 93.989 2;3 0.0013599 2 62992 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.045 53.65 26957000 0 7707500 4453500 1578000 0 13218000 5786 1136 5698 25354;25355;25356;25357;25358;25359;25360 16758;16759 16759 2 NVSEQMTNEDK Unmodified 1293.5507 0.55069474 1506 Q9H9A7 RMI1 RecQ-mediated genome instability protein 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 47.826 43.94 2 0.0057163 3 31609 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.153 63.021 2403200 0 654340 697110 121010 0 930740 5787 1506 5699 25361;25362;25363;25364 16760;16761;16762 16762 3 NVSGISFTENMGSSQQK Unmodified 1812.8312 0.8312267 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 129.05 119.55 2 2.7085E-21 3 84364 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.92 86.29 22358000 6503700 1605500 4302300 814840 1832600 7298700 5788 945 5700 25365;25366;25367;25368;25369;25370 16763;16764;16765 16763 1 NVSTKPSNIVKYPEK Unmodified 1702.9254 0.92538508 1255 Q7Z6E9;Q7Z6E9-2;Q7Z6E9-4 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 0 0 2 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 84.714 75.851 3 0.01402 2 52777 20150910_Q1_SA_NiHu_Masterprac_group10_C 54.09 23.134 9708900 1494500 2951900 1329600 1200400 2732500 0 5789 1255 5701 25371;25372;25373;25374;25375 16766;16767 16767 2 NVTPNSYAEPLAAPGGGERYSR Unmodified 2305.1087 0.10872219 1562 Q9NYD6 HOXC10 Homeobox protein Hox-C10 yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 124.07 113.75 3 6.7001E-07 3 78866 20150910_Q1_SA_NiHu_Masterprac_group15_C 65.423 53.766 16004000 0 3510100 7212100 0 1065300 4216800 5790 1562 5702 25376;25377;25378;25379 16768;16769;16770 16770 3 NVTQIEPFCLETDRR Unmodified 1876.9101 0.91014572 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 133.23 128.27 3 0.014656 1 88356 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.278 25.084 39819000 0 0 0 0 0 39819000 5791 1611 5703 25380 16771 16771 1 NVTQIEPFCLETDRRGALK Unmodified 2246.1478 0.14775023 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 132.15 131.55 4 0.013338 1 85128 20150910_Q1_SA_NiHu_Masterprac_group10_B 39.338 21.139 16931000 0 16931000 0 0 0 0 5792 1611 5704 25381 16772 16772 1 NVVDSSQKPTPSAREDPAPK Unmodified 2122.0655 0.065460388 464 Q03164-2;Q03164;E9PQG7;E9PR05 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 1 1 1 67.927 59.439 3;4 0.0063642 2 41683 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.798 41.032 6117200 1310500 1027000 1134600 0 1586800 1058100 5793 464 5705 25382;25383;25384;25385;25386;25387 16773;16774 16773 1 NVVLPTETEVAPAK Unmodified 1466.7981 0.7980593 388 E7EVA0;P27816-6;P27816;P27816-2 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 128.38 120.23 2 7.881E-05 2 79416 20150910_Q1_SA_NiHu_Masterprac_group10_B 90.689 67.327 4039200 3048600 990550 0 0 0 0 5794 388 5706 25388;25389 16775;16776 16775 2 NVVLPTETEVAPAKDVTLLKETER Unmodified 2651.4382 0.4381614 388 E7EVA0;P27816-6;P27816;P27816-2 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 133.14 115.29 4 0.0024857 1 82181 20150910_Q1_SA_NiHu_Masterprac_group15_C 48.597 37.913 4425500 0 0 0 0 4425500 0 5795 388 5707 25390 16777 16777 0 NVVMVNQGLTK Unmodified 1201.6489 0.64889264 413 E9PC90;P14635 CCNB1 G2/mitotic-specific cyclin-B1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 104.48 96.021 2 0.00043615 4 64240 20150910_Q1_SA_NiHu_Masterprac_group10_B 96.604 71.478 56706000 5104600 6381700 6566600 4710200 8910500 25033000 5796 413 5708 25391;25392;25393;25394;25395;25396 16778;16779;16780;16781 16780 4 NWNSSVPR Unmodified 958.46208 0.46207815 739 O75319 DUSP11 RNA/RNP complex-1-interacting phosphatase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 80.325 72.945 2 0.017081 1 55791 20150910_Q1_SA_NiHu_Masterprac_group15_C 82.279 50.975 10618000 0 189390 1431300 904000 2582100 5511000 5797 739 5709 25397;25398;25399;25400;25401 16782 16782 1 NYCDPQGHPSTGLK Unmodified 1572.6991 0.69909031 736 O60934;F5H3R2 NBN Nibrin yes no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 2 2 67.541 60.06 2;3 0.000314 5 47728 20150910_Q1_SA_NiHu_Masterprac_group15_C 88.075 73.606 27456000 3018100 3347200 1349600 800390 8539600 10401000 5798 736 5710 25402;25403;25404;25405;25406;25407;25408;25409;25410 16783;16784;16785;16786;16787 16786 4 NYCDPQGHPSTGLKTTTPGPSLSQGVSVDEK Unmodified 3256.5306 0.53063459 736 O60934;F5H3R2 NBN Nibrin yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 129.73 112.65 4 2.1713E-32 3 75707 20150910_Q1_SA_NiHu_Masterprac_group10_C 79.512 73.79 26449000 10217000 0 13777000 0 2455800 0 5799 736 5711 25411;25412;25413 16788;16789;16790 16790 3 NYEDEDSLKTLR Unmodified 1481.6998 0.69980182 655 P11388;H7BXX8;P11388-2;P11388-3;P11388-4;C9J5P2;H7BXH5 TOP2A DNA topoisomerase 2-alpha yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 100.47 90.973 3 0.029239 1 62171 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.115 21.456 2507700 0 0 0 0 310790 2196900 5800 655 5712 25414;25415 16791 16791 1 NYEGTCEIPESK Unmodified 1425.6082 0.60820962 643 Q12968-5;Q12968-6;Q12968-4;I3L3K7;H3BR83;H3BRS1;Q12968-3;Q12968-2;Q12968 NFATC3 Nuclear factor of activated T-cells, cytoplasmic 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 79.817 74.791 2 0.014783 1 51687 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.04 55.04 4531600 0 620860 0 812980 2117800 979890 5801 643 5713 25416;25417;25418;25419 16792 16792 1 NYGFVHIEDK Unmodified 1220.5826 0.58258722 1457 Q9BWF3;E9PB51;Q9BQ04;E7EQS3;Q9BWF3-3;D6R9K7;Q9BWF3-2;E9PLB0;E9PM61 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 2 2 1 111.97 104.06 2;3 0.010306 2 75781 20150910_Q1_SA_NiHu_Masterprac_group13_C 73.666 55.945 9231100 0 0 7368100 1464700 0 398320 5802 1457 5714 25420;25421;25422;25423;25424 16793;16794 16793 2 NYGGTVAVTESGHTCQR Unmodified 1835.8221 0.82205899 295 CON__P06868 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 3 2 3 71.983 65.569 2;3 3.7876E-14 12 45781 20150910_Q1_SA_NiHu_Masterprac_group10_B 100.43 63.795 159640000 34410000 24430000 3516800 14139000 28297000 54844000 + 5803 295 5715 25425;25426;25427;25428;25429;25430;25431;25432;25433;25434;25435;25436;25437;25438;25439;25440;25441 16795;16796;16797;16798;16799;16800;16801;16802;16803;16804;16805;16806 16802 12 NYGSPLISGSTPK Unmodified 1319.6721 0.67213051 1143 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 111.31 103.93 2 0.0098413 3 69648 20150910_Q1_SA_NiHu_Masterprac_group10_C 55.724 38.058 6283400 1074100 675220 1459100 814020 0 2261000 5804 1143 5716 25442;25443;25444;25445;25446 16807;16808;16809 16809 3 NYKEPEPAPNSVSITGSVDDHFAK Unmodified 2601.2347 0.23471056 596 Q14135-5;Q14135-6;G5E9M9;Q14135-2;Q14135;G5E9F4;Q14135-4;G5E9M7 VGLL4 Transcription cofactor vestigial-like protein 4 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 130.61 125.18 4 5.5746E-09 2 77097 20150910_Q1_SA_NiHu_Masterprac_group10_C 66.711 59.235 16908000 3898900 8872500 0 4136700 0 0 5805 596 5717 25447;25448;25449 16810;16811 16811 2 NYLKERGDQTVLILHAK Unmodified 1997.1058 0.10580906 1042 Q06330;D6R927;Q06330-5;Q06330-4;Q06330-6;Q06330-7;D6RBQ8;D6RA45;D6RCM1;D6R946;D6RB37;D6REP3;D6RF98;D6RIV8;D6RAT2;D6RIZ8;D6R9X3;D6R9K5;D6REC2 RBPJ Recombining binding protein suppressor of hairless yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 123.78 108.2 4 0.0078235 1 72462 20150910_Q1_SA_NiHu_Masterprac_group10_C 44.312 38.038 3134400 3134400 0 0 0 0 0 5806 1042 5718 25450 16812 16812 1 NYSENTDKDLSR Unmodified 1440.6481 0.6481006 1454 Q9BVI0;Q5JWZ0;Q5JXL1 PHF20 PHD finger protein 20 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 50.69 45.551 3 0.021578 1 37742 20150910_Q1_SA_NiHu_Masterprac_group15_C 51.463 33.724 2790700 471420 0 0 353710 938530 1027000 5807 1454 5719 25451;25452;25453;25454 16813 16813 1 NYSPRPESGTVSDAPQLKENPSTVGVER Unmodified 3013.4741 0.47410598 1624 Q9UQ84-4;Q9UQ84 EXO1 Exonuclease 1 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 120.25 108.99 4 2.1355E-07 6 73477 20150910_Q1_SA_NiHu_Masterprac_group10_C 57.21 49.183 12748000 2037000 3112400 1971600 0 2279200 3347300 5808 1624 5720 25455;25456;25457;25458;25459 16814;16815;16816;16817;16818;16819 16819 6 NYSPYYNTIDDLK Unmodified 1604.7359 0.73585297 899 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 133.06 123.95 2 7.2969E-182 4 85813 20150910_Q1_SA_NiHu_Masterprac_group10_B 171.62 150.88 259010000 0 149330000 88317000 16108000 5257100 0 + 5809 899 5721 25460;25461;25462;25463 16820;16821;16822;16823 16823 4 NYTAYRQEPIASK Unmodified 1539.7682 0.76815616 499 F5GZ90;Q9NZJ0 DTL Denticleless protein homolog yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 75.963 70.749 2 0.018378 3 56095 20150910_Q1_SA_NiHu_Masterprac_group13_C 58.595 42.654 3092700 0 752700 841980 189100 0 1308900 5810 499 5722 25464;25465;25466;25467 16824;16825;16826 16824 3 NYYQDTPKQIR Unmodified 1424.7048 0.70482762 1645 Q9Y3C1 NOP16 Nucleolar protein 16 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 81.797 72.994 3 0.0055249 1 50717 20150910_Q1_SA_NiHu_Masterprac_group10_B 72.2 44.556 7321600 2271300 1366900 953380 917970 1812000 0 5811 1645 5723 25468;25469;25470;25471;25472 16827 16827 1 PAGPVQAVPPPPPVPTEPKQPTEEEASSK Unmodified 2960.5131 0.51311725 1138 Q15459;E9PAW1;F8WB66 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 130.48 130.18 3 0.00010741 1 83295 20150910_Q1_SA_NiHu_Masterprac_group10_B 47.331 29.491 8434800 0 6387800 0 2047000 0 0 5812 1138 5724 25473;25474 16828 16828 1 PAYHSSLMDPDTK Unmodified 1460.6606 0.66057954 103 C9JZD1;B4DM63;O15145 ARPC3 Actin-related protein 2/3 complex subunit 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 81.83 79.847 3 0.0034783 2 54695 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.528 50.609 2273600 0 777470 0 0 0 1496200 5813 103 5725 25475;25476 16829;16830 16830 2 PCSEETPAISPSK Unmodified 1401.6446 0.64459513 609 H0Y477;H0YNJ9;P33316-2 DUT Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 73.773 66.378 2 3.104E-15 4 46172 20150910_Q1_SA_NiHu_Masterprac_group15_B 107.46 75.801 5587900 890480 819000 1019500 459700 910990 1488200 5814 609 5726 25477;25478;25479;25480;25481;25482 16831;16832;16833;16834 16831 4 PEFLEDPSVLTKDKLK Unmodified 1858.0088 0.0087803574 913;914 P42166;P42167;P42167-2;G5E972 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 3 2 2 2 133.87 122.96 3;4 0 14 85632 20150910_Q1_SA_NiHu_Masterprac_group13_B 261.17 207.08 1944900000 488490000 274860000 266270000 170230000 407700000 337310000 5815 913;914 5727 25483;25484;25485;25486;25487;25488;25489;25490;25491;25492;25493;25494;25495;25496;25497 16835;16836;16837;16838;16839;16840;16841;16842;16843;16844;16845;16846;16847;16848 16836 14 PERDSEPFSNPLAPDGHDVDDPHSFHQSK Unmodified 3256.4446 0.44459677 1071 Q13123;Q9H4P6;E7EQZ7;D6RAY9 IK Protein Red yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 130.21 112.22 6 0.031657 1 80819 20150910_Q1_SA_NiHu_Masterprac_group13_C 15.213 11.883 6339300 0 0 6339300 0 0 0 5816 1071 5728 25498 16849 16849 0 PETLGELQKLGIK Unmodified 1424.8239 0.82388012 582 G3V2D4;Q6NXP6-2;Q6NXP6 NOXRED1 NADP-dependent oxidoreductase domain-containing protein 1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 45.768 39.904 3 0.0066383 1 29142 20150910_Q1_SA_NiHu_Masterprac_group10_C 59.198 28.631 2502600 2502600 0 0 0 0 0 5817 582 5729 25499 16850 16850 1 PGETEEPRPPEQQDQEGGEAAK Unmodified 2378.0622 0.062225504 677 Q96JP5-2;H9KV86;Q96JP5 ZFP91 E3 ubiquitin-protein ligase ZFP91 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 2 2 67.096 60.063 3 1.4675E-158 6 43934 20150910_Q1_SA_NiHu_Masterprac_group10_C 145.43 133.46 60343000 8005000 11331000 12052000 5912000 6009900 17033000 5818 677 5730 25500;25501;25502;25503;25504;25505;25506;25507;25508;25509 16851;16852;16853;16854;16855;16856 16856 6 PGFTCCVPGCYNNSHRDK Unmodified 2167.8986 0.89861153 1381 Q96EK4 THAP11 THAP domain-containing protein 11 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 1 2 93.928 87.054 3;4 4.4272E-14 8 64451 20150910_Q1_SA_NiHu_Masterprac_group15_C 99.238 85.238 58504000 5008500 11821000 15095000 6283200 5601600 14694000 5819 1381 5731 25510;25511;25512;25513;25514;25515;25516;25517;25518;25519 16857;16858;16859;16860;16861;16862;16863;16864 16862 8 PGPTPSGTNVGSSGRSPSK Unmodified 1768.8704 0.8703894 978 P60468 SEC61B Protein transport protein Sec61 subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 51.634 45.575 3 2.3529E-65 5 33254 20150910_Q1_SA_NiHu_Masterprac_group15_B 122.46 105.89 56763000 12144000 6594800 8259900 6333800 11995000 11436000 5820 978 5732 25520;25521;25522;25523;25524;25525;25526 16865;16866;16867;16868;16869 16866 5 PHAFKPGDLVFAK Unmodified 1425.7769 0.77687035 1252 Q7Z4V5-2;Q7Z4V5;I3L080 HDGFRP2 Hepatoma-derived growth factor-related protein 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.2 125.24 3 0.0014556 1 85002 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.189 66.161 3572100 0 0 0 0 0 3572100 5821 1252 5733 25527 16870 16870 1 PHVNVGTIGHVDHGK Unmodified 1565.8063 0.806273 935 P49411;H3BNU3 TUFM Elongation factor Tu, mitochondrial yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 1 1 1 68.91 61.446 3 4.4996E-125 8 49053 20150910_Q1_SA_NiHu_Masterprac_group15_C 152.88 124.59 123300000 26357000 19056000 23632000 22237000 13971000 18042000 5822 935 5734 25528;25529;25530;25531;25532;25533;25534;25535 16871;16872;16873;16874;16875;16876;16877;16878 16875 8 PLPEPSEQEGESVK Unmodified 1524.7308 0.7307676 683;1171 Q96CP2;I3L1Y9;I3L4I0;I3L0R3;I3L231;Q4VC44-2;Q4VC44;Q4VC44-3 FLYWCH2;FLYWCH1 FLYWCH family member 2;FLYWCH-type zinc finger-containing protein 1 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 92.434 85.17 2;3 4.4769E-124 8 58588 20150910_Q1_SA_NiHu_Masterprac_group10_C 151.66 130.92 199530000 28921000 41101000 29004000 20019000 2977000 77503000 5823 683;1171 5735 25536;25537;25538;25539;25540;25541;25542;25543;25544 16879;16880;16881;16882;16883;16884;16885;16886 16886 8 PMFIVNTNVPR Unmodified 1286.6805 0.68052712 836 P14174 MIF Macrophage migration inhibitory factor yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 133.48 132.88 2 0.030011 1 86561 20150910_Q1_SA_NiHu_Masterprac_group10_B 91.313 54.896 10895000 0 10895000 0 0 0 0 5824 836 5736 25545 16887 16887 0 PNFCAAPNCTRK Unmodified 1434.6496 0.6496377 472 E9PSI2;O43422-2;O43422 PRKRIR 52 kDa repressor of the inhibitor of the protein kinase yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 63.029 56.17 3 0.0009608 4 39695 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.169 67.506 5369100 668190 549770 819600 1353200 956650 1021700 5825 472 5737 25546;25547;25548;25549;25550;25551 16888;16889;16890;16891 16890 4 PNTGCFEPFVLYFPDYSIGNLQK Unmodified 2705.2836 0.28357501 724 O43913;B4DXT8;O43913-2 ORC5 Origin recognition complex subunit 5 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.21 126.24 3 0.0042093 1 86023 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.919 36.904 0 0 0 0 0 0 0 5826 724 5738 25552 16892 16892 1 PQNPSAIYEESNPK Unmodified 1572.742 0.74200098 1334 Q8TCT9-2 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 65.534 57.665 3 0.0066917 1 42274 20150910_Q1_SA_NiHu_Masterprac_group10_C 52.576 7.6077 2891500 2891500 0 0 0 0 0 5827 1334 5739 25553 16893 16893 1 PQYQTWEEFSR Unmodified 1469.6575 0.65754307 937 P49458;E9PE20;P49458-2 SRP9 Signal recognition particle 9 kDa protein yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 132.63 123.12 2 0 6 84888 20150910_Q1_SA_NiHu_Masterprac_group10_B 215.72 168.88 695910000 143520000 129320000 85662000 93531000 63166000 180710000 5828 937 5740 25554;25555;25556;25557;25558;25559 16894;16895;16896;16897;16898;16899 16898 6 PQYQTWEEFSRAAEK Unmodified 1868.8693 0.86932676 937 P49458;E9PE20;P49458-2 SRP9 Signal recognition particle 9 kDa protein yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 1 2 132.7 121.64 2;3 0 5 84982 20150910_Q1_SA_NiHu_Masterprac_group13_B 196.37 159.19 1045000000 159910000 195410000 390410000 182590000 116700000 0 5829 937 5741 25560;25561;25562;25563;25564;25565;25566;25567 16900;16901;16902;16903;16904 16900 5 PSETPQAEVGPTGCPHRSGPHSAK Unmodified 2483.1612 0.16116846 898 P35520;P35520-2;C9JMA6 CBS Cystathionine beta-synthase;Cysteine synthase yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 4 2 2 2 2 2 56.795 50.235 4;5 0.00080123 8 42096 20150910_Q1_SA_NiHu_Masterprac_group13_C 52.769 38.332 21998000 5812300 2769100 4720900 2826400 2942800 2926500 5830 898 5742 25568;25569;25570;25571;25572;25573;25574;25575;25576;25577;25578;25579;25580;25581 16905;16906;16907;16908;16909;16910;16911;16912 16907 7 PSKGPLQSVQVFGR Unmodified 1498.8256 0.82561145 986 P62249;Q6IPX4 RPS16 40S ribosomal protein S16 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 131.65 120.25 3 1.4202E-20 5 86271 20150910_Q1_SA_NiHu_Masterprac_group15_B 112.02 95.448 44244000 16754000 6565400 4253900 0 6650700 10019000 5831 986 5743 25582;25583;25584;25585;25586 16913;16914;16915;16916;16917 16914 5 PTTVLLAR Unmodified 869.53345 0.53345218 1670 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 2 106.91 96.42 2 0.014817 5 69943 20150910_Q1_SA_NiHu_Masterprac_group15_C 87.323 35.987 21075000000 3804800000 2702800000 4056400000 5286100000 5225000000 0 + 5832 1670 5744 25587;25588;25589;25590;25591;25592;25593;25594;25595 16918;16919;16920;16921;16922 16921 5 QAAAAAAAAAATAAWTGTTFTK Unmodified 2022.0171 0.017053633 1403 Q96KR1;B5MEH6 ZFR Zinc finger RNA-binding protein yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 135.54 135.54 2 2.0365E-74 1 88586 20150910_Q1_SA_NiHu_Masterprac_group13_B 121.33 107.54 1670000 0 0 0 1670000 0 0 5833 1403 5745 25596 16923 16923 1 QAAGGLRAELLR Unmodified 1253.7204 0.7204181 1121 Q14980-2;Q14980;F5H2L0;H0YFY6 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 109.26 103.52 3 0.0035565 2 70623 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.721 39.916 13317000 0 3158300 2275400 1007200 0 6876400 5834 1121 5746 25597;25598;25599;25600 16924;16925 16925 2 QAANLQDCYR Unmodified 1237.551 0.55096951 162 B4E2Z2;P43246;E9PHA6;E7EU21;B4DL39;B4DSB9;E7EQQ1;E9PCI8 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 71.195 64.201 2 0.0029216 2 44781 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.465 77.552 3834100 383160 503680 0 0 1063200 1884100 5835 162 5747 25601;25602;25603;25604 16926;16927 16926 2 QAARRPFVAINYAAIR Unmodified 1816.022 0.022019852 331 E7EQY4;Q9BTC8-2;D6W5A2;F8W8M8;E7EV10;Q9BTC8 MTA3 Metastasis-associated protein MTA3 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 131.31 126.35 4 0.00209 1 86147 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.937 38.61 7797300 0 0 0 0 0 7797300 5836 331 5748 25605 16928 16928 1 QAASGLVGQENAR Unmodified 1299.6531 0.6531264 1629 Q9Y265;Q9Y265-2 RUVBL1 RuvB-like 1 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 1 1 1 1 1 64.849 57.688 2 5.2096E-24 5 41374 20150910_Q1_SA_NiHu_Masterprac_group10_B 115.37 87.459 40927000 8566800 4007900 4273300 3135700 9680700 11263000 5837 1629 5749 25606;25607;25608;25609;25610;25611;25612 16929;16930;16931;16932;16933 16931 5 QAEEQIEHLQRK Unmodified 1507.7743 0.77430417 634 O75150-4;H3BP71;O75150;F8W8Z4;F6SYU7;Q6ZN99;O75150-3 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 60.002 53.985 3 0.0058579 1 38456 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.885 42.452 7037800 0 775250 594900 0 0 5667600 5838 634 5750 25613;25614;25615 16934 16934 1 QAEPELDLR Unmodified 1069.5404 0.54038805 375 G5E9D3;P20810-5;E7ESM9;P20810-7;P20810-6;B7Z468;F8W7E0;H0Y7F0;P20810-3;E9PDE4;E7ES10;P20810-4;E9PCH5;G5E946;B7Z574;P20810-2;P20810;H0Y9H6;E7EVY3;E7EQ12;D6RAA8;D6RC54 CAST Calpastatin yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 108.33 98.778 2 4.9295E-12 1 67294 20150910_Q1_SA_NiHu_Masterprac_group15_B 122.96 97.049 11267000 0 0 1194800 781580 2004200 7286200 5839 375 5751 25616;25617;25618;25619 16935 16935 1 QAGEAHMAADGETNGSCENSDASSHANAAK Unmodified 2987.2006 0.20060303 1507 Q9H9B1-3;Q9H9B1;Q9H9B1-4;C9JD67;Q9H9B1-2 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 58.36 48.583 4 0.023479 1 40069 20150910_Q1_SA_NiHu_Masterprac_group13_C 25.016 25.016 4124700 0 1438600 1354500 0 1331600 0 5840 1507 5752 25620;25621;25622 16936 16936 1 QAGIGGEPAAAGAGCSPRPK Unmodified 1850.9057 0.90572904 1218 Q68DK7 MSL1 Male-specific lethal 1 homolog yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 76.233 68.772 3 0.00010876 5 49170 20150910_Q1_SA_NiHu_Masterprac_group10_C 70.02 70.02 21514000 2343300 4465700 3432000 2059700 3843200 5370300 5841 1218 5753 25623;25624;25625;25626;25627;25628 16937;16938;16939;16940;16941 16941 5 QAGPAPAAATAASK Unmodified 1210.6306 0.63060004 1447 Q9BTC0;Q9BTC0-1 DIDO1 Death-inducer obliterator 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 51.681 45.723 2 0.0011067 5 37785 20150910_Q1_SA_NiHu_Masterprac_group15_C 73.802 50.424 27554000 2764200 3802300 4823700 2277000 4238000 9648500 5842 1447 5754 25629;25630;25631;25632;25633;25634 16942;16943;16944;16945;16946 16944 5 QAGVAIGRLCEK Unmodified 1300.6922 0.69215444 1246 Q7RTV0 PHF5A PHD finger-like domain-containing protein 5A yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 3 2 1 2 2 2 90.421 83.359 2;3 0.0016414 6 62147 20150910_Q1_SA_NiHu_Masterprac_group15_C 93.839 59.969 23819000 3215600 3062600 1881200 1974700 7536300 6148100 5843 1246 5755 25635;25636;25637;25638;25639;25640;25641;25642;25643;25644;25645;25646 16947;16948;16949;16950;16951;16952 16950 5 QALAWMVSRENSK Unmodified 1518.7613 0.76129664 1107 Q14527;Q14527-2;E7ESN4;F5H3D6 HLTF Helicase-like transcription factor yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 2 122.2 115.17 2;3 0.0022764 4 78956 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.023 42.312 12604000 0 1903500 6055700 0 0 4645300 5844 1107 5756 25647;25648;25649;25650 16953;16954;16955;16956 16954 4 QALEASNRIQESK Unmodified 1472.7583 0.75831975 840 P15924 DSP Desmoplakin yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 62.342 53.768 3 0.026375 1 38521 20150910_Q1_SA_NiHu_Masterprac_group10_B 46.069 25.286 1390400 0 809040 0 0 581360 0 5845 840 5757 25651;25652 16957 16957 1 QALVGSDSAEDEK Unmodified 1347.6154 0.61540349 462 E9PPY3;O43159 RRP8 Ribosomal RNA-processing protein 8 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 61.082 54.207 2 7.6269E-10 7 44723 20150910_Q1_SA_NiHu_Masterprac_group13_C 106.29 89.126 39822000 3856000 8281700 10091000 184630 6128700 11279000 5846 462 5758 25653;25654;25655;25656;25657;25658;25659 16958;16959;16960;16961;16962;16963;16964 16958 7 QALVGSDSAEDEKR Unmodified 1503.7165 0.71651452 462 E9PPY3;O43159 RRP8 Ribosomal RNA-processing protein 8 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 55.696 48.451 3 0.011601 1 34647 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.246 20.79 1099300 0 0 0 0 311570 787730 5847 462 5759 25660;25661 16965 16965 1 QALVGSDSAEDEKRK Unmodified 1631.8115 0.81147753 462 E9PPY3;O43159 RRP8 Ribosomal RNA-processing protein 8 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 2 2 2 2 2 43.4 38.207 3;4 3.4818E-08 5 30952 20150910_Q1_SA_NiHu_Masterprac_group13_C 98.943 84.369 27727000 858060 3498700 5763700 1897700 3652200 12056000 5848 462 5760 25662;25663;25664;25665;25666;25667;25668;25669;25670;25671;25672 16966;16967;16968;16969;16970 16967 5 QAMLENASDIKLEK Unmodified 1588.8131 0.81305744 1321;411 E9PC67;F8VQZ0;Q5STZ8;Q8NE71;Q8NE71-2;H0YGW7 ABCF1 ATP-binding cassette sub-family F member 1 no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 117.72 115.9 3 0.0015122 2 78994 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.515 56.284 8343300 0 1627200 0 2320500 0 4395700 5849 411;1321 5761 25673;25674;25675 16971;16972 16972 2 QAMQGMPVRNTGSPK Unmodified 1600.7814 0.78138015 331 E7EQY4;Q9BTC8-2;D6W5A2;F8W8M8;E7EV10;Q9BTC8 MTA3 Metastasis-associated protein MTA3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 73.033 64.561 3 0.0069309 1 45042 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.659 29.92 5932300 204720 0 1099700 0 0 4627900 5850 331 5762 25676;25677;25678 16973 16973 1 QAPAPTVIRDPPSITPAVKSPLPGPSEEK Unmodified 2978.6077 0.60768634 1069 Q13112 CHAF1B Chromatin assembly factor 1 subunit B yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 132.55 126.66 4 0.0023698 3 85413 20150910_Q1_SA_NiHu_Masterprac_group13_B 34.966 29.92 79073000 0 8842300 34286000 18284000 0 17661000 5851 1069 5763 25679;25680;25681;25682 16974;16975;16976 16974 3 QAPQPQSSLQR Unmodified 1238.6367 0.63674805 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 59.37 52.076 2 0.014059 1 42610 20150910_Q1_SA_NiHu_Masterprac_group13_C 60.08 35.385 42306000 0 0 11297000 524790 1363000 29121000 5852 1344 5764 25683;25684;25685;25686 16977 16977 1 QAQAADKMKEQEDLAK Unmodified 1802.8833 0.88326227 276 H0Y6A0;C9JZR4;E9PB03;Q9NP61 ARFGAP3 ADP-ribosylation factor GTPase-activating protein 3 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 61.095 53.646 3 0.011157 1 38168 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.966 30.111 3574400 682160 0 857040 757080 776480 501610 5853 276 5765 25687;25688;25689;25690;25691 16978 16978 1 QAQLAQTLQQQEQASQGLR Unmodified 2125.0876 0.087592814 1121 Q14980-2;Q14980;F5H4J1;F5H6Y5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 130.92 130.32 2 7.1974E-38 1 83749 20150910_Q1_SA_NiHu_Masterprac_group10_B 108.97 83.532 5589500 0 5589500 0 0 0 0 5854 1121 5766 25692 16979 16979 1 QARPPDASAARGGEDTNDLQQK Unmodified 2324.1105 0.1105131 212 B7ZM82;B3KVH1;O95785;O95785-2 WIZ Protein Wiz yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 1 68.35 59.893 3;4 0.013457 6 43553 20150910_Q1_SA_NiHu_Masterprac_group10_C 45.916 35.918 50656000 6343100 8828500 10728000 4644500 13206000 6904800 5855 212 5767 25693;25694;25695;25696;25697;25698;25699;25700;25701;25702 16980;16981;16982;16983;16984;16985 16985 6 QASQGMVGQLAAR Unmodified 1315.6667 0.66666797 1627 Q9Y230 RUVBL2 RuvB-like 2 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 99.484 92.514 2 0.0094432 2 63126 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.139 23.81 3768400 0 563970 0 0 1027700 2176700 5856 1627 5768 25703;25704;25705 16986;16987 16986 2 QAVAISGGQILVAK Unmodified 1353.798 0.79799972 1609 Q9ULM3 YEATS2 YEATS domain-containing protein 2 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 131.7 131.39 2 0.0011071 1 84526 20150910_Q1_SA_NiHu_Masterprac_group10_B 72.615 50.037 11347000 0 9843300 0 1504000 0 0 5857 1609 5769 25706;25707 16988 16988 1 QAVCSNGHIWLR Unmodified 1439.7092 0.70920149 1602 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 109.66 99.456 3 0.012097 1 67711 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.258 40.479 7618400 0 0 0 0 2386400 5232000 5858 1602 5770 25708;25709 16989 16989 1 QAVDSPAASFCR Unmodified 1307.5928 0.59283433 1497 Q9H6R4-4;Q9H6R4;G8JLK7;F5H6M7 NOL6 Nucleolar protein 6 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 100.1 90.596 2 3.0473E-07 1 61980 20150910_Q1_SA_NiHu_Masterprac_group15_B 102.97 95.708 9396700 0 0 0 0 3076100 6320600 5859 1497 5771 25710;25711 16990 16990 1 QAVFFVGQSAR Unmodified 1208.6302 0.63020611 23 A6NHR9;A6NHR9-2 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 131.65 121.32 2 0.022684 2 85475 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.023 31.337 35645000 18019000 0 0 0 0 17627000 5860 23 5772 25712;25713 16991;16992 16991 2 QAVGGAGPPNPAINGSAPR Unmodified 1729.886 0.88597988 94 H0Y539;E9PFM5;P29353-5;P29353-3;P29353-2;P29353-7;B4DL02;P29353;P29353-6 SHC1 SHC-transforming protein 1 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 101.34 91.688 2 1.6948E-10 4 61860 20150910_Q1_SA_NiHu_Masterprac_group10_B 92.096 58.345 5256500 0 1207800 492890 0 518510 3037300 5861 94 5773 25714;25715;25716;25717 16993;16994;16995;16996 16996 3 QAVNNFKNETGYTK Unmodified 1612.7845 0.7845345 1255 Q7Z6E9;Q7Z6E9-2;Q7Z6E9-4;H3BSK8 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 71.497 66.383 3 0.013886 1 53320 20150910_Q1_SA_NiHu_Masterprac_group13_C 48.214 30.119 2915800 0 451240 1151400 574550 0 738540 5862 1255 5774 25718;25719;25720;25721 16997 16997 1 QCEINYVK Unmodified 1052.4961 0.4960804 1106 Q14331;E9PLY7;Q9BZ01 FRG1;FRG1B Protein FRG1;Protein FRG1B yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 79.947 68.785 2 0.034536 1 47948 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.825 48.525 3789500 0 0 467630 0 1116800 2205000 5863 1106 5775 25722;25723;25724 16998 16998 1 QCIRENGNVAKTPR Unmodified 1641.8369 0.8369212 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 1 1 2 1 45.775 39.959 3;4 0.0010646 6 33673 20150910_Q1_SA_NiHu_Masterprac_group15_C 88.224 53.96 28141000 3302400 7423000 2980600 669380 4841400 8924400 5864 919;920 5776 25725;25726;25727;25728;25729;25730;25731;25732;25733 16999;17000;17001;17002;17003;17004 17001 6 QCSELGICAVSVGPK Unmodified 1603.7698 0.76981241 1021 Q00653-3;Q00653-4;Q00653 NFKB2 Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 132.26 122.76 2 1.216E-55 6 84500 20150910_Q1_SA_NiHu_Masterprac_group10_B 125.39 103.57 87759000 12658000 40469000 7434800 6002300 4232100 16962000 5865 1021 5777 25734;25735;25736;25737;25738;25739 17005;17006;17007;17008;17009;17010 17009 4 QDAQSLHGDIPQK Unmodified 1435.7056 0.7055559 1534 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 69.136 62.567 3 0.0093036 2 43791 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.343 25.271 3440400 0 994030 0 0 1410700 1035700 5866 1534 5778 25740;25741;25742 17011;17012 17011 2 QDAQSLHGDIPQKQR Unmodified 1719.8652 0.86524444 1534 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 2 2 1 2 59.177 53.052 3;4 0.0025803 3 43394 20150910_Q1_SA_NiHu_Masterprac_group15_C 60.55 48.349 13261000 1670400 1302600 2014600 931600 3559800 3782400 5867 1534 5779 25743;25744;25745;25746;25747;25748;25749;25750;25751 17013;17014;17015 17015 3 QDAQVVLYR Unmodified 1090.5771 0.57710791 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 1 1 1 1 1 100.74 92.321 2 1.8635E-69 4 62966 20150910_Q1_SA_NiHu_Masterprac_group15_B 152.11 90.332 43673000 5417400 3461200 3124900 1806800 9847700 20015000 5868 1012 5780 25752;25753;25754;25755;25756;25757;25758 17016;17017;17018;17019 17016 4 QDGGTAPVASASPK Unmodified 1284.631 0.63099397 1421 Q96T37-2;Q96T37-3;Q96T37 RBM15 Putative RNA-binding protein 15 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 50.972 45.065 2 3.9657E-13 3 32335 20150910_Q1_SA_NiHu_Masterprac_group15_B 105.58 69.918 6056900 834520 661620 983000 471530 1087300 2018900 5869 1421 5781 25759;25760;25761;25762;25763;25764 17020;17021;17022 17021 3 QDIEDTASDAK Unmodified 1191.5255 0.52552585 553 F8W689;P48382;B7Z848 RFX5 DNA-binding protein RFX5 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 55.592 49.535 2 2.9028E-05 4 35410 20150910_Q1_SA_NiHu_Masterprac_group15_B 103.21 80.885 5893500 0 870450 1258800 455110 1316000 1993100 5870 553 5782 25765;25766;25767;25768;25769 17023;17024;17025;17026 17024 4 QDPSYYLK Unmodified 1012.4866 0.48656157 1079 Q13356;Q13356-2;E7EW80 PPIL2 Peptidyl-prolyl cis-trans isomerase-like 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 99.952 90.227 2 0.037841 1 61866 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.846 38.528 5862600 0 0 692580 0 0 5170000 5871 1079 5783 25770;25771 17027 17027 1 QDQISGLSQSEVK Unmodified 1417.7049 0.7048872 547 Q99590-2;F8VXG7;Q99590;F8W028 SCAF11 Protein SCAF11 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 96.46 88.48 2 2.1869E-35 4 59963 20150910_Q1_SA_NiHu_Masterprac_group10_B 124.47 73.183 60616000 2793000 11917000 9579200 7288500 13250000 15788000 5872 547 5784 25772;25773;25774;25775;25776;25777 17028;17029;17030;17031 17029 4 QDQSPSLRTGEEK Unmodified 1473.7059 0.70594983 966 P54278;P54278-3;C9J167;I3L0B5;Q68D20 PMS2;PMS2CL Mismatch repair endonuclease PMS2;Protein PMS2CL yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 45.766 40.511 3 0.00022056 3 28887 20150910_Q1_SA_NiHu_Masterprac_group10_B 94.402 43.043 4257200 0 753110 1020700 387620 652560 1443300 5873 966 5785 25778;25779;25780;25781;25782 17032;17033;17034 17034 3 QDQVCIAR Unmodified 988.47601 0.47601365 642 H3BR35;P15170;P15170-2;F5GWG9;Q8IYD1 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 61.749 53.74 2 0.008061 2 38731 20150910_Q1_SA_NiHu_Masterprac_group10_B 103.83 63.109 9748200 689940 2845600 3932600 0 494160 1785900 5874 642 5786 25783;25784;25785;25786;25787 17035;17036 17036 2 QDRIFPPETSASVAATPPPSTASAPAAVNSSASADKPLSNMK Unmodified 4166.059 0.059001387 815 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 1 1 132.64 119.06 4 1.6248E-80 4 87162 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.802 79.505 174860000 46398000 0 22887000 0 0 105570000 5875 815 5787 25788;25789;25790;25791 17037;17038;17039;17040 17038 4 QDTSSSTTHLAQQLK Unmodified 1643.8115 0.81147753 1533 Q9NQW6;Q9NQW6-2 ANLN Actin-binding protein anillin yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 2 2 83.464 75.196 2;3 2.8367E-05 7 51787 20150910_Q1_SA_NiHu_Masterprac_group13_B 89.136 57.54 46598000 4769600 6974100 5720900 742210 10589000 17803000 5876 1533 5788 25792;25793;25794;25795;25796;25797;25798;25799;25800;25801;25802;25803 17041;17042;17043;17044;17045;17046;17047 17041 7 QDTSSSTTHLAQQLKQER Unmodified 2057.0138 0.013759169 1533 Q9NQW6;Q9NQW6-2 ANLN Actin-binding protein anillin yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 1 2 2 90.446 82.118 3;4 0.0012658 6 55967 20150910_Q1_SA_NiHu_Masterprac_group10_B 78.441 62.508 36856000 2191300 6984600 6821900 1958900 5561100 13338000 5877 1533 5789 25804;25805;25806;25807;25808;25809;25810;25811;25812;25813 17048;17049;17050;17051;17052;17053 17051 5 QDWVDGEPTEAEK Unmodified 1502.6525 0.65251728 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 99.645 92.493 2 4.5547E-91 2 63096 20150910_Q1_SA_NiHu_Masterprac_group15_B 146.59 124.67 6312800 0 1799500 490680 0 0 4022600 5878 1012 5790 25814;25815;25816 17054;17055 17055 2 QDYAFACEQMK Unmodified 1389.5693 0.56932169 362 Q96PV6;Q96PV6-2;F8W9Q9;E7EQP8 LENG8 Leukocyte receptor cluster member 8 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 110.18 103.69 2 0.0020441 1 68651 20150910_Q1_SA_NiHu_Masterprac_group10_B 89.301 79.07 4388700 846950 755860 0 0 0 2785800 5879 362 5791 25817;25818;25819 17056 17056 1 QEAADAALRVLIGENEK Unmodified 1825.9534 0.95339074 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 135.88 119.12 3 6.0811E-08 2 82577 20150910_Q1_SA_NiHu_Masterprac_group15_C 93.181 59.394 41706000 8339500 0 0 0 33367000 0 5880 352;968 5792 25820;25821 17057;17058 17057 2 QEAATLAANNTQLQAR Unmodified 1698.8649 0.86491009 1121 Q14980-2;Q14980;F5H4J1;F5H6Y5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 96.413 89.477 2 0.014512 1 60510 20150910_Q1_SA_NiHu_Masterprac_group10_B 42.818 27.185 1868200 0 653920 0 0 237140 977140 5881 1121 5793 25822;25823;25824 17059 17059 1 QEAGISEGQGTAGEEEEK Unmodified 1847.8021 0.80209464 544 F8VVL1;O43583 DENR Density-regulated protein yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 63.209 56.531 2 0.0031849 2 45581 20150910_Q1_SA_NiHu_Masterprac_group15_C 50.358 28.162 6136500 0 864510 660890 542290 1572600 2496200 5882 544 5794 25825;25826;25827;25828;25829 17060;17061 17061 2 QEAGISEGQGTAGEEEEKK Unmodified 1975.8971 0.89705766 544 F8VVL1;O43583 DENR Density-regulated protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 53.496 49.221 3 0.0094523 1 35009 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.057 16.006 2070500 0 467980 0 375330 417880 809340 5883 544 5795 25830;25831;25832;25833 17062 17062 1 QEATFCSQRDGDASLNK Unmodified 1925.8538 0.85375305 1533 Q9NQW6;Q9NQW6-2;H7C167;H7C0Y6 ANLN Actin-binding protein anillin yes no 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 76.269 67.897 3 0.0020731 4 47188 20150910_Q1_SA_NiHu_Masterprac_group13_B 55.66 48.33 31054000 0 0 4285800 2145400 4448800 20174000 5884 1533 5796 25834;25835;25836;25837 17063;17064;17065;17066 17063 4 QEATRQDHAQQLATAAEER Unmodified 2152.0257 0.025720839 1121 Q14980-2;Q14980;F5H4J1;F5H6Y5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 2 2 1 2 2 77.348 69.19 3;4 0.0022469 6 48221 20150910_Q1_SA_NiHu_Masterprac_group10_B 51.786 39.593 28067000 3231300 6745100 2430300 1178400 5278700 9203000 5885 1121 5797 25838;25839;25840;25841;25842;25843;25844;25845;25846;25847;25848 17067;17068;17069;17070;17071;17072 17070 5 QECIKEVVEK Unmodified 1260.6384 0.63838754 1634 Q9Y2M0-2;Q9Y2M0;H3BQ24 FAN1 Fanconi-associated nuclease 1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 68.835 61.608 2;3 0.0028869 2 43256 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.113 56.489 16067000 2009700 1790500 2133000 1946500 5160500 3026900 5886 1634 5798 25849;25850;25851;25852;25853;25854;25855;25856;25857;25858;25859;25860 17073;17074 17074 2 QEELVQQVR Unmodified 1127.5935 0.59348625 776 O95983;O95983-2 MBD3 Methyl-CpG-binding domain protein 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 83.646 74.446 2 0.0058982 2 51507 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.409 40.343 7397700 0 3137500 1113900 0 154780 2991500 5887 776 5799 25861;25862;25863;25864 17075;17076 17075 2 QEELVQQVRK Unmodified 1255.6884 0.68844927 776 O95983;O95983-2 MBD3 Methyl-CpG-binding domain protein 3 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 1 2 63.901 58.371 2;3 1.3456E-09 5 41149 20150910_Q1_SA_NiHu_Masterprac_group15_B 117.31 69.221 28980000 0 8685700 4612900 344100 0 15337000 5888 776 5800 25865;25866;25867;25868;25869;25870;25871 17077;17078;17079;17080;17081 17079 5 QEENGVFIK Unmodified 1062.5346 0.53457439 1248 Q7Z2T5 TRMT1L TRMT1-like protein yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 87.259 78.636 2 0.025701 1 54156 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.692 30.164 9659200 0 0 1511000 502240 1717400 5928600 5889 1248 5801 25872;25873;25874;25875 17082 17082 1 QEENGVFIKTTDDTTTDNYIAQGK Unmodified 2687.2562 0.25623386 1248 Q7Z2T5 TRMT1L TRMT1-like protein yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 130.42 127.64 3 1.0686E-08 2 82824 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.259 49.182 4775600 0 2310000 0 0 0 2465600 5890 1248 5802 25876;25877 17083;17084 17084 2 QEEPPPGPQRPDQSAAAAGPGDPK Unmodified 2396.1357 0.13566522 1437 Q9BQ61 C19orf43 Uncharacterized protein C19orf43 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 80.533 73.153 3 0.00070307 3 57475 20150910_Q1_SA_NiHu_Masterprac_group13_C 52.91 41.566 11765000 0 4085800 3086300 1021900 3266000 304730 5891 1437 5803 25878;25879;25880;25881;25882 17085;17086;17087 17085 3 QEESVDPDYWEK Unmodified 1523.6416 0.64161824 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 114.7 111.61 2 0.0018289 1 76134 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.204 66.584 8121100 0 3112200 0 0 0 5008900 5892 486 5804 25883;25884 17088 17088 1 QEEVGGVKEEAGGLLQCPEVAK Unmodified 2326.1475 0.14747546 39 Q7Z5J4-3;E7EVZ3;Q7Z5J4;A8MTC3;Q7Z5J4-2;C9JWB0;A8MXE8;Q7Z5J4-4;E7ETW1 RAI1 Retinoic acid-induced protein 1 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 2 131.31 131.01 3 9.6008E-07 2 84082 20150910_Q1_SA_NiHu_Masterprac_group10_B 79.341 67.375 16144000 0 14582000 0 1562000 0 0 5893 39 5805 25885;25886;25887 17089;17090 17090 2 QELDDILK Unmodified 972.51278 0.51277632 486;430 F5H2G1;F5GWX5;Q14839;Q14839-2;Q12873;E9PG89;Q12873-2 CHD4;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 no no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 129.15 123.11 2 1.0347E-15 4 83235 20150910_Q1_SA_NiHu_Masterprac_group13_C 127.02 43.269 223670000 0 33195000 53110000 0 0 137370000 5894 486;430 5806 25888;25889;25890;25891 17091;17092;17093;17094 17091 4 QELEADVSHKETK Unmodified 1512.742 0.74200098 1415 Q96QE3;Q96QE3-2 ATAD5 ATPase family AAA domain-containing protein 5 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 45.23 41.569 3 5.3753E-09 3 29669 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.56 68.696 8654800 0 1780800 3399100 694130 0 2780800 5895 1415 5807 25892;25893;25894;25895 17095;17096;17097 17096 3 QELITYPQPQK Unmodified 1343.7085 0.70851601 431 Q86SS3;E9PGM9;P78332;C9JSL1;F8WF63;F8WCA5 RBM6 RNA-binding protein 6 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 117.68 108.18 2 0.02409 2 71275 20150910_Q1_SA_NiHu_Masterprac_group10_B 81.92 61.186 5654100 260370 1219400 0 0 1650100 2524200 5896 431 5808 25896;25897;25898;25899 17098;17099 17099 0 QEMEQQEQLK Unmodified 1289.5922 0.59216562 1681 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 53.767 46.899 2 0.01424 1 38402 20150910_Q1_SA_NiHu_Masterprac_group13_C 68.626 6.8612 660280 0 0 474020 0 0 186270 + 5897 1681 5809 25900;25901 17100 17100 1 QENLSWQHELHQLR Unmodified 1816.8969 0.89687892 355 Q14789;E7EP74 GOLGB1 Golgin subfamily B member 1 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 136.14 133.66 2 0.036774 1 86816 20150910_Q1_SA_NiHu_Masterprac_group13_B 48.277 12.506 394380000 0 0 0 393610000 0 768060 5898 355 5810 25902;25903 17101 17101 0 QEPENDQGVVSQAGK Unmodified 1584.738 0.73797824 1447 Q9BTC0;Q9BTC0-1;Q9BTC0-2;Q9BTC0-3 DIDO1 Death-inducer obliterator 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 63.185 55.616 2 0.0060092 1 39291 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.727 29.785 1668000 0 0 292370 139960 441390 794280 5899 1447 5811 25904;25905;25906;25907 17102 17102 1 QEPERNECFLSHK Unmodified 1672.7628 0.7627532 294 CON__P02769 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 66.874 59.968 3 1.3377E-20 5 47614 20150910_Q1_SA_NiHu_Masterprac_group15_C 110.15 71.477 99555000 6886100 21504000 21419000 0 0 49745000 + 5900 294 5812 25908;25909;25910;25911;25912 17103;17104;17105;17106;17107 17105 5 QEPERNECFLSHKDDSPDLPK Unmodified 2540.1602 0.16016541 294 CON__P02769 yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 103.02 95.218 4 0.030129 1 63562 20150910_Q1_SA_NiHu_Masterprac_group13_B 33.248 19.665 38083000 0 11405000 5352600 2761000 6072600 12492000 + 5901 294 5813 25913;25914;25915;25916;25917 17108 17108 1 QEPFEPKEEISGSGTQPGGAK Unmodified 2172.0335 0.033491558 1373 Q96C00 ZBTB9 Zinc finger and BTB domain-containing protein 9 yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 102.47 94.667 3 0.00017962 4 64729 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.339 42.712 8826700 0 1653000 815120 779450 2358600 3220500 5902 1373 5814 25918;25919;25920;25921;25922 17109;17110;17111;17112 17110 4 QEPFEPKEEISGSGTQPGGAKEETK Unmodified 2659.2613 0.26131924 1373 Q96C00 ZBTB9 Zinc finger and BTB domain-containing protein 9 yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 96.522 88.526 4 0.0023345 2 65365 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.497 40.298 11661000 2497800 1923400 1534600 1040300 2274000 2390600 5903 1373 5815 25923;25924;25925;25926;25927;25928 17113;17114 17114 2 QEPLLIGSTK Unmodified 1084.6128 0.61282471 934 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 105.71 103.22 2 0.022902 1 70284 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.213 13.507 2080500 0 623300 0 0 0 1457200 5904 934 5816 25929;25930 17115 17115 1 QEQINTEPLEDTVLSPTK Unmodified 2041.0215 0.021529888 706 O15446;O15446-2 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 133.37 115.53 2 0.025093 1 82452 20150910_Q1_SA_NiHu_Masterprac_group15_C 37.157 12 8766100 0 0 0 0 8766100 0 5905 706 5817 25931 17116 17116 1 QEQINTEPLEDTVLSPTKK Unmodified 2169.1165 0.11649291 706 O15446;O15446-2 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.36 131.75 3 2.4488E-102 1 85240 20150910_Q1_SA_NiHu_Masterprac_group10_B 127.88 95.997 0 0 0 0 0 0 0 5906 706 5818 25932 17117 17117 1 QEQNQEQPIR Unmodified 1268.6109 0.61092723 291 CON__P02668 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 58.316 57.262 2 0.034449 1 40447 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.05 40.017 0 0 0 0 0 0 0 + 5907 291 5819 25933 17118 17118 1 QERNFDDATMK Unmodified 1353.5983 0.59831364 80 E7ENR3;B4DDF4;Q99439;B4DUT8;H3BTZ5;H3BVI6 CNN2 Calponin-2 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 59.547 53.043 2;3 0.00072635 6 38010 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.407 68.099 25769000 223140 4228000 4794700 1423800 5011700 10088000 5908 80 5820 25934;25935;25936;25937;25938;25939;25940;25941;25942;25943;25944 17119;17120;17121;17122;17123;17124 17122 6 QESGSEIHVEVK Unmodified 1340.6572 0.65720872 919;920 P46013;F5H4V4;P46013-2;E7EN66 MKI67 Antigen KI-67 no no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 2 1 1 72.865 67.111 2 0.001885 4 46760 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.868 26.416 5747800 0 1595400 0 0 1390100 2762400 5909 919;920 5821 25945;25946;25947;25948 17125;17126;17127;17128 17125 4 QETIMRHHTLRQAPQPQSSLQR Unmodified 2641.3619 0.36193396 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 77.912 76.557 4 0.022131 1 52849 20150910_Q1_SA_NiHu_Masterprac_group15_B 34.148 22.103 2346300 0 0 0 0 0 2346300 5910 1344 5822 25949 17129 17129 1 QETVADFTPK Unmodified 1134.5557 0.55570376 438 E9PHJ7;O75400-2;O75400-3;F8W9L2;O75400;F5H578 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 106.1 97.548 2 0.01406 1 64931 20150910_Q1_SA_NiHu_Masterprac_group10_B 68.786 41.897 14175000 379700 2780100 1253300 1384000 2180800 6197500 5911 438 5823 25950;25951;25952;25953;25954;25955 17130 17130 1 QEVIITK Unmodified 829.49092 0.49091866 1107 Q14527;Q14527-2 HLTF Helicase-like transcription factor yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 60.762 58.679 2 7.3957E-06 1 41497 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.6 35.171 1860100 0 1018800 0 0 0 841330 5912 1107 5824 25956;25957 17131 17131 0 QEVLIRTDPESR Unmodified 1441.7525 0.75250609 474 F2Z2E1;Q96EK7;F5GZX9;F5GY05;Q96EK7-2 FAM120B Constitutive coactivator of peroxisome proliferator-activated receptor gamma yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 91.306 81.555 3 0.029521 1 55673 20150910_Q1_SA_NiHu_Masterprac_group10_B 47.991 24.874 2312600 0 1580700 731900 0 0 0 5913 474 5825 25958;25959 17132 17132 1 QEVPMCTGPEAR Unmodified 1373.6068 0.60676983 474 F2Z2E1;Q96EK7;F5GZX9;F5GY05;Q96EK7-2 FAM120B Constitutive coactivator of peroxisome proliferator-activated receptor gamma yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 84.929 78.227 2 0.0038334 1 53845 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.519 45.154 3278100 0 1321100 0 0 583700 1373200 5914 474 5826 25960;25961;25962 17133 17133 1 QEVPMYTGSEPR Unmodified 1392.6344 0.63436479 474 F2Z2E1;Q96EK7;F5GZX9;F5GY05;Q96EK7-2 FAM120B Constitutive coactivator of peroxisome proliferator-activated receptor gamma yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 107.34 97.409 2 0.0088026 1 64883 20150910_Q1_SA_NiHu_Masterprac_group10_B 60.157 1.8371 10405000 0 1590500 1101300 0 1109300 6604100 5915 474 5827 25963;25964;25965;25966 17134 17134 1 QEVPTCTGPESR Unmodified 1359.6089 0.60887832 474 F2Z2E1;Q96EK7;F5GZX9;F5GY05;Q96EK7-2 FAM120B Constitutive coactivator of peroxisome proliferator-activated receptor gamma yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 62.851 56.634 2 0.0056833 3 39928 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.662 50.867 2578700 0 653520 419570 0 0 1505600 5916 474 5828 25967;25968;25969 17135;17136;17137 17135 3 QEVSRIPASQTSVPFDHLGK Unmodified 2195.1335 0.13348037 939 P49674;H0Y5S9;H0Y682 CSNK1E Casein kinase I isoform epsilon yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.68 125.71 4 0.0060511 1 85482 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.788 20.584 4908600 0 0 0 0 0 4908600 5917 939 5829 25970 17138 17138 1 QEVVRSVLEPQAVPDPEEGSSAPR Unmodified 2575.2878 0.28780876 1263 Q86UT8 CCDC84 Coiled-coil domain-containing protein 84 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 131.9 123.76 3 9.3859E-09 2 84221 20150910_Q1_SA_NiHu_Masterprac_group10_B 73.574 61.574 15723000 4318900 11404000 0 0 0 0 5918 1263 5830 25971;25972 17139;17140 17139 2 QEYDESGPSIVHRK Unmodified 1643.7903 0.79034816 164 F5H0N0;B4E335;P63261;P60709;B4DW52;F5GYT4;Q6S8J3;P0CG38;A5A3E0;P0CG39;Q9BYX7 ACTG1;ACTB;POTEE;POTEI;POTEF;POTEJ;POTEKP Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member I;POTE ankyrin domain family member F;POTE ankyrin domain family member J;Putative beta-actin-like protein 3 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 2 2 69.651 62.036 3;4 0.00020332 7 48950 20150910_Q1_SA_NiHu_Masterprac_group15_C 88.092 72.273 22180000 1005400 2222200 5258000 2190700 2018900 9485000 5919 164 5831 25973;25974;25975;25976;25977;25978;25979;25980;25981;25982 17141;17142;17143;17144;17145;17146;17147 17145 7 QEYEQLIAK Unmodified 1120.5764 0.57643921 899 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 106.74 97.044 2 1.3225E-19 2 64685 20150910_Q1_SA_NiHu_Masterprac_group10_B 128.86 83.877 4759700 0 2167500 2592200 0 0 0 + 5920 899 5832 25983;25984 17148;17149 17149 2 QEYVDYSESAK Unmodified 1317.5725 0.57247604 733 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 80.385 72.841 2 7.9349E-30 6 51819 20150910_Q1_SA_NiHu_Masterprac_group10_C 128.08 104.7 30424000 5520500 2972800 2392500 2948800 9281700 7307800 5921 733 5833 25985;25986;25987;25988;25989;25990 17150;17151;17152;17153;17154;17155 17155 6 QEYVDYSESAKK Unmodified 1445.6674 0.66743906 733 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 74.791 59.551 3 0.030041 1 47462 20150910_Q1_SA_NiHu_Masterprac_group15_C 40.377 22.174 1004500 0 0 0 0 1004500 0 5922 733 5834 25991 17156 17156 1 QFDAGTVNYEQPTK Unmodified 1596.742 0.74200098 620 Q59HE6;H0YGC0;P52756 RBM5 RNA-binding protein 5 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 108.12 98.19 2 0.0048001 5 66842 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.034 42.092 3927500 0 888580 664320 0 915940 1458600 5923 620 5835 25992;25993;25994;25995 17157;17158;17159;17160;17161 17158 5 QFENPIIK Unmodified 987.53893 0.53893149 114 B4DPR4;C9J494;Q9H000 MKRN2 Probable E3 ubiquitin-protein ligase makorin-2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 118.35 113.04 2 0.014854 1 76950 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.181 34.699 8374900 966540 978450 0 1116700 0 5313200 5924 114 5836 25996;25997;25998;25999 17162 17162 1 QFESLPATHIR Unmodified 1297.6779 0.67788459 754 O94776 MTA2 Metastasis-associated protein MTA2 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 105.35 102.86 2 0.00053364 2 70256 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.477 69.432 13035000 0 3334500 0 0 0 9700300 5925 754 5837 26000;26001 17163;17164 17163 1 QFESLPATHIRGK Unmodified 1482.7943 0.79431133 754 O94776 MTA2 Metastasis-associated protein MTA2 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 95.411 85.961 3 0.0086828 2 58689 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.106 30.574 48901000 0 9567000 7921800 0 1165700 30246000 5926 754 5838 26002;26003;26004;26005 17165;17166 17165 2 QFNCPVCDYAASK Unmodified 1558.6544 0.65444831 1072 Q13127;A0PJ83;Q13127-4;F8WAN5 REST RE1-silencing transcription factor yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 109.65 102.13 2 0.006464 1 69617 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.248 38.663 2110100 0 684510 508290 0 0 917320 5927 1072 5839 26006;26007;26008 17167 17167 1 QFQLYEEPDTK Unmodified 1396.6511 0.65106071 721 O43823;B7Z8L8 AKAP8 A-kinase anchor protein 8 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 124.05 117.24 2 5.9088E-10 3 76437 20150910_Q1_SA_NiHu_Masterprac_group10_B 112.94 68.374 6616000 3649100 0 0 878350 0 2088500 5928 721 5840 26009;26010;26011;26012 17168;17169;17170 17169 3 QFSSADEAALKEPIIK Unmodified 1745.92 0.91996535 326 D6RD67;Q9HCC0-2;Q9HCC0 MCCC2 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 130.85 130.85 3 0.012435 1 83795 20150910_Q1_SA_NiHu_Masterprac_group13_B 44.132 13.258 1259900 0 0 0 1259900 0 0 5929 326 5841 26013 17171 17171 1 QFSSSYLSR Unmodified 1073.5142 0.5141733 899 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 99.506 91.786 2 0.014686 2 62663 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.533 38.78 55256000 0 4889400 7815600 7810400 20579000 14162000 + 5930 899 5842 26014;26015;26016;26017;26018 17172;17173 17173 2 QFTSSSSIKGSSGLGGGSSR Unmodified 1885.913 0.91298249 304 Q04695;CON__Q04695;H9KV34;A8MW45;CON__Q9QWL7;F5H7G6;C9JH30 KRT17 Keratin, type I cytoskeletal 17 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 76.33 74.925 3 0.021179 1 51649 20150910_Q1_SA_NiHu_Masterprac_group13_B 36.744 36.744 1244000 0 429750 0 814200 0 0 + 5931 304 5843 26019;26020 17174 17174 1 QFTYYPLVEDKEEVQRK Unmodified 2171.0899 0.089884225 1021 Q00653-3;Q00653-4;Q00653 NFKB2 Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit yes no 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 131.33 119.42 4 0.0016514 2 83703 20150910_Q1_SA_NiHu_Masterprac_group13_B 75.376 61.11 22623000 0 0 8103600 11513000 3006600 0 5932 1021 5844 26021;26022;26023 17175;17176 17175 2 QFVCQTCGK Unmodified 1126.4899 0.48994916 1633 Q9Y2K1;Q9Y2K1-2 ZBTB1 Zinc finger and BTB domain-containing protein 1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 58.328 45.746 2 0.015286 1 37712 20150910_Q1_SA_NiHu_Masterprac_group13_C 76.17 55.333 629140 0 0 629140 0 0 0 5933 1633 5845 26024 17177 17177 1 QFVDGPPGPVK Unmodified 1139.5975 0.597509 1479 Q9H0H5;F8VRD2;F8W1E5;F8W1T4;F8VV37 RACGAP1 Rac GTPase-activating protein 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 106.74 98.041 2 0.0047155 1 70655 20150910_Q1_SA_NiHu_Masterprac_group15_C 75.566 46.015 16408000 1398300 2538200 2017800 1451200 2838800 6163800 5934 1479 5846 26025;26026;26027;26028;26029;26030 17178 17178 1 QFVDGPPGPVKK Unmodified 1267.6925 0.69247202 1479 Q9H0H5;F8VRD2;F8W1E5;F8W1T4;F8VV37 RACGAP1 Rac GTPase-activating protein 1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 85.704 78.347 3 9.4336E-06 2 53985 20150910_Q1_SA_NiHu_Masterprac_group15_B 100.69 73.538 3885200 434870 907510 609790 0 0 1933000 5935 1479 5847 26031;26032;26033;26034 17179;17180 17179 2 QGANINEIRQMSGAQIK Unmodified 1856.9527 0.95267924 1135 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 130.77 113.63 3 3.5987E-74 4 76692 20150910_Q1_SA_NiHu_Masterprac_group10_C 130.47 103.88 83452000 42453000 0 33679000 0 7320200 0 5936 1135 5848 26035;26036;26037 17181;17182;17183;17184 17184 4 QGANINEIRQMSGAQIK Oxidation (M) 1872.9476 0.94759386 1135 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 1 1 By matching By matching By matching By matching By matching By MS/MS 1 1 94.617 92.635 3 0.011438 1 63355 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.158 25.703 4897300 0 1552000 0 0 0 3345300 5937 1135 5848 26038;26039 17185 17185 142 0 QGDVYRQGTTPPIWHLTDKK Unmodified 2339.2022 0.20222864 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 127.26 124.48 4 0.019792 1 84067 20150910_Q1_SA_NiHu_Masterprac_group15_B 36.207 17.505 27096000 0 922870 0 0 0 26173000 5938 352;968 5849 26040;26041 17186 17186 1 QGECLNFGIK Unmodified 1164.5597 0.55974328 97 B4DLG2;O75152;E9PQ61;E9PBY7 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 126.96 125.11 2 0.0086818 1 84722 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.102 53.395 12251000 0 2059200 0 855860 0 9336400 5939 97 5850 26042;26043;26044 17187 17187 1 QGGAALEGSALANGR Unmodified 1370.6902 0.69024019 972 P56177;F8VZ54 DLX1 Homeobox protein DLX-1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 93.838 84.463 2 0.00045531 2 57818 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.531 50.136 12886000 1382000 2061000 2387400 0 2602500 4453500 5940 972 5851 26045;26046;26047;26048;26049 17188;17189 17188 2 QGGGGGGGSVPGIER Unmodified 1283.6218 0.62182627 956 P52272-2;P52272;Q59ES8 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 73.653 66.258 2 0.00077552 5 46019 20150910_Q1_SA_NiHu_Masterprac_group13_B 71.545 51.702 14665000 2247100 1948400 2296100 1247700 3257300 3668700 5941 956 5852 26050;26051;26052;26053;26054;26055 17190;17191;17192;17193;17194 17190 5 QGGLGPMNIPLVSDPK Unmodified 1621.8498 0.84977729 1044 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 135.52 135.52 2 0.0031887 1 88583 20150910_Q1_SA_NiHu_Masterprac_group13_B 66.289 40.924 1691300 0 0 0 1691300 0 0 5942 1044 5853 26056 17195 17195 1 QGIETPEDQNDLRK Unmodified 1641.7958 0.79582747 1141 Q15637-6;Q15637-4;Q15637-3;Q15637-2;Q15637 SF1 Splicing factor 1 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 2 1 79.972 71.916 2;3 8.9071E-172 8 49566 20150910_Q1_SA_NiHu_Masterprac_group15_B 164.13 118.78 386930000 83665000 55623000 41717000 56810000 70780000 78330000 5943 1141 5854 26057;26058;26059;26060;26061;26062;26063;26064;26065;26066 17196;17197;17198;17199;17200;17201;17202;17203 17198 8 QGLGPSGTSGARKPASSK Unmodified 1684.8856 0.88564553 657 Q5T7U1;Q9Y5Q8-2;H7BY84;Q9Y5Q8;Q9Y5Q8-3;H0Y5D2;H0Y3Y0;C9J393;H9KV68 GTF3C5 General transcription factor 3C polypeptide 5 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 37.748 32.583 3 0.021395 1 22522 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.998 28.225 1573400 0 0 604730 0 0 968710 5944 657 5855 26067;26068 17204 17204 1 QGNKNDLEMGIK Unmodified 1345.666 0.66599927 1389 Q96GM8;B4DEM6 TOE1 Target of EGR1 protein 1 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 80.097 71.665 3 0.032347 1 49896 20150910_Q1_SA_NiHu_Masterprac_group13_B 46.985 25.977 7878300 1189800 0 3553700 980140 631960 1522700 5945 1389 5856 26069;26070;26071;26072;26073 17205 17205 1 QGNLSSQVPLK Unmodified 1169.6404 0.64043645 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 98.219 90.173 2 0.0035513 4 61102 20150910_Q1_SA_NiHu_Masterprac_group13_B 81.92 61.713 36691000 2391000 2951000 1278500 1433500 7818300 20818000 5946 1012 5857 26074;26075;26076;26077;26078;26079 17206;17207;17208;17209 17206 4 QGNLSSQVPLKR Unmodified 1325.7415 0.74154747 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 78.506 76.473 2 0.019921 1 52805 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.326 38.65 1198500 0 359510 0 0 0 839020 5947 1012 5858 26080;26081 17210 17210 1 QGQPVMVSGVHHK Unmodified 1402.714 0.71395252 516 Q9Y4C1;F5H4E6;F5H070 KDM3A Lysine-specific demethylase 3A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 52.817 45.547 3 0.00018026 2 32898 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.402 83.404 2232300 0 355300 388860 0 349430 1138700 5948 516 5859 26082;26083;26084;26085 17211;17212 17212 2 QGQSNSGVVQVQQK Unmodified 1485.7536 0.75356872 1061 Q12830-4;Q12830-2;Q12830 BPTF Nucleosome-remodeling factor subunit BPTF yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 52.448 46.424 2 0.0099323 3 33396 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.092 29.697 5554900 584290 577840 1001200 328850 556480 2506300 5949 1061 5860 26086;26087;26088;26089;26090;26091 17213;17214;17215 17214 3 QGSFRGFPALSQK Unmodified 1421.7415 0.74154747 943;1661 Q9Y6R0;P49757-4;P49757-2;P49757-3;P49757;G3V3Z8 NUMBL;NUMB Numb-like protein;Protein numb homolog no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 121.73 119.04 3 0.012258 1 80792 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.448 29.096 2575200 0 942400 0 0 0 1632800 5950 1661;943 5861 26092;26093 17216 17216 1 QGSPIHVLK Unmodified 977.56581 0.56581494 241 C9JG97;Q13685;C9JEH3 AAMP Angio-associated migratory cell protein yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 78.882 67.134 2 0.031556 1 53748 20150910_Q1_SA_NiHu_Masterprac_group13_C 63.816 11.1 77099000 0 15183000 45856000 0 16061000 0 5951 241 5862 26094;26095;26096 17217 17217 1 QGTTPPIWHLTDKK Unmodified 1620.8624 0.86239089 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 2 122.49 109.95 3;4 0.013477 4 71855 20150910_Q1_SA_NiHu_Masterprac_group10_B 43.305 12.157 5607000 0 3104800 2502200 0 0 0 5952 352;968 5863 26097;26098;26099 17218;17219;17220;17221 17220 4 QGVHAAGAAEAGPLASVPAQSAK Unmodified 2087.076 0.075965495 1390 Q96H79 ZC3HAV1L Zinc finger CCCH-type antiviral protein 1-like yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 111.11 102.12 3 0.0018434 3 67391 20150910_Q1_SA_NiHu_Masterprac_group10_B 50.132 29.744 6610200 1166500 1723800 1223800 0 0 2496000 5953 1390 5864 26100;26101;26102;26103 17222;17223;17224 17224 3 QGYVLSSIEGR Unmodified 1207.6197 0.619701 719 O43684-2;O43684;B4DDM6 BUB3 Mitotic checkpoint protein BUB3 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 127.14 117.65 2 3.3081E-20 6 81985 20150910_Q1_SA_NiHu_Masterprac_group15_B 122.33 59.987 78880000 26315000 6932600 13589000 1826400 10278000 19939000 5954 719 5865 26104;26105;26106;26107;26108;26109 17225;17226;17227;17228;17229;17230 17226 6 QHGAVQSGGLNPELNDK Unmodified 1762.8598 0.85982471 1594 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RJ97 TRPS1 Zinc finger transcription factor Trps1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 82.851 76.802 3 0.029777 1 53016 20150910_Q1_SA_NiHu_Masterprac_group15_B 36.504 20.322 2588500 0 0 820330 627550 0 1140600 5955 1594 5866 26110;26111;26112 17231 17231 1 QHMVNATPFK Unmodified 1171.5808 0.58081308 1509 Q9H9L3 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 84.908 76.159 2 0.0088952 1 57679 20150910_Q1_SA_NiHu_Masterprac_group15_C 77.533 62.2 13699000 0 0 0 0 5669000 8029500 5956 1509 5867 26113;26114 17232 17232 1 QHQNTMEDKFIVCLNK Unmodified 2003.9557 0.9557157 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.73 125.77 4 0.0008578 1 85491 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.185 57.285 9044300 0 0 0 0 0 9044300 5957 1012 5868 26115 17233 17233 1 QICCHTYLLTNAVSSNGPSGNDTPEELRKK Unmodified 3388.614 0.61398706 1107 Q14527;Q14527-2 HLTF Helicase-like transcription factor yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 130.5 125.54 5 2.769E-23 1 85263 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.944 67.392 9810600 0 0 0 0 0 9810600 5958 1107 5869 26116 17234 17234 1 QIEEINEQIRKEK Unmodified 1655.8842 0.88424855 1426 Q99543 DNAJC2 DnaJ homolog subfamily C member 2 yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 82.477 73.252 3 0.012453 1 50770 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.799 43.811 4772600 0 1430500 960580 0 923560 1458000 5959 1426 5870 26117;26118;26119;26120 17235 17235 1 QIEIQFAQGDR Unmodified 1303.6521 0.65206377 743 O75494-5;Q5JRI1;O75494-4;Q5JRI3;O75494-3;O75494-2;O75494;Q8WXF0 SRSF10;SRSF12 Serine/arginine-rich splicing factor 10;Serine/arginine-rich splicing factor 12 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 124.64 124.04 2 0.013086 1 79353 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.235 44.462 1252900 0 1252900 0 0 0 0 5960 743 5871 26121 17236 17236 1 QIEIQFAQGDRK Unmodified 1431.747 0.74702678 743 O75494-5;Q5JRI1;O75494-4;Q5JRI3;O75494-3;O75494-2;O75494;Q8WXF0 SRSF10;SRSF12 Serine/arginine-rich splicing factor 10;Serine/arginine-rich splicing factor 12 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 112.89 102.27 3 0.0020634 1 67656 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.538 37.466 7004300 451990 2759400 1228800 0 787470 1776600 5961 743 5872 26122;26123;26124;26125;26126 17237 17237 1 QIEIQFAQGDRKTPNQMK Unmodified 2131.0844 0.084421691 743 O75494-5;Q5JRI1;O75494-4;Q5JRI3;O75494-3;O75494-2;O75494 SRSF10 Serine/arginine-rich splicing factor 10 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 2 2 115.24 105.27 3;4 6.5082E-05 6 76522 20150910_Q1_SA_NiHu_Masterprac_group13_C 85.473 85.473 37820000 2923400 9761800 6641500 1366800 6262100 10865000 5962 743 5873 26127;26128;26129;26130;26131;26132;26133;26134;26135;26136;26137 17238;17239;17240;17241;17242;17243 17238 6 QIFQPSVQQQPTKPVK Unmodified 1852.0207 0.020682448 1585 Q9UBW7;Q9UBW7-2 ZMYM2 Zinc finger MYM-type protein 2 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 100.99 95.542 3 0.0026335 1 69437 20150910_Q1_SA_NiHu_Masterprac_group15_C 56.46 34.646 4776900 0 1441700 0 542030 861740 1931300 5963 1585 5874 26138;26139;26140;26141 17244 17244 1 QIGNVAALPGIVHR Unmodified 1443.831 0.83103118 1647 Q9Y3I0;E7EQS9 C22orf28;RTCB tRNA-splicing ligase RtcB homolog yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 132.83 114.84 3 9.2723E-08 1 83730 20150910_Q1_SA_NiHu_Masterprac_group13_C 96.82 61.922 3880200 0 0 3880200 0 0 0 5964 1647 5875 26142 17245 17245 1 QILDPAAR Unmodified 882.49232 0.49231565 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 81.58 74.035 2 0.016902 3 51345 20150910_Q1_SA_NiHu_Masterprac_group10_B 82.426 51.122 23860000 216370 3076400 2732800 1025800 7100200 9708500 5965 919;920 5876 26143;26144;26145;26146;26147;26148 17246;17247;17248 17248 3 QILDPAARVTGMK Unmodified 1398.7653 0.76531938 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 3 1 2 122.46 115.37 2;3 7.1456E-05 9 79386 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.756 59.429 100030000 26071000 10954000 25932000 8967900 4516200 23588000 5966 919;920 5877 26149;26150;26151;26152;26153;26154;26155;26156;26157;26158;26159 17249;17250;17251;17252;17253;17254;17255;17256;17257 17253 8 QILDPAASVTGSR Unmodified 1313.6939 0.69392858 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 117.31 115.49 2 7.5049E-06 4 78507 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.941 61.704 11615000 0 2328700 0 1089700 0 8196200 5967 919;920 5878 26160;26161;26162;26163 17258;17259;17260;17261 17259 4 QILDPAASVTGSRR Unmodified 1469.795 0.79503961 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 109.76 100.16 3 0.01763 1 73347 20150910_Q1_SA_NiHu_Masterprac_group13_C 40.516 19.12 27705000 0 0 2733100 373090 2451000 22148000 5968 919;920 5879 26164;26165;26166;26167 17262 17262 1 QILDPAASVTGSRRQLR Unmodified 1867.0388 0.038792128 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 114.81 105.11 4 0.010794 1 71869 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.743 36.072 29773000 0 0 6611500 3353800 3208500 16600000 5969 919;920 5880 26168;26169;26170;26171 17263 17263 1 QILDSAASLTGSK Unmodified 1289.6827 0.68269519 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 126.18 114.8 2 2.2383E-131 5 76428 20150910_Q1_SA_NiHu_Masterprac_group10_C 157.5 104.29 105870000 30912000 14079000 36612000 0 22453000 1814900 5970 919;920 5881 26172;26173;26174;26175;26176 17264;17265;17266;17267;17268 17268 5 QIPQATASMK Unmodified 1073.5539 0.55392962 711 O43175;Q5SZU1 PHGDH D-3-phosphoglycerate dehydrogenase yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 75.899 66.824 2 0.020238 1 46685 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.426 16.97 5447900 0 867900 784450 0 1775400 2020100 5971 711 5882 26177;26178;26179;26180 17269 17269 1 QISGQYSGSPQLLK Unmodified 1504.7886 0.78855725 1409 Q96N67-4;Q96N67-3;Q96N67-5;Q96N67-2;Q96N67-6;Q96N67;Q96NI0 DOCK7 Dedicator of cytokinesis protein 7 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 117.18 111.71 2 3.1351E-06 4 72584 20150910_Q1_SA_NiHu_Masterprac_group13_B 88.092 65.771 7220000 1645000 795300 0 2173000 0 2606700 5972 1409 5883 26181;26182;26183;26184 17270;17271;17272;17273 17270 3 QISNLQQSISDAEQR Unmodified 1715.8438 0.84384029 789 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 123.32 122.72 2 0.008098 1 78661 20150910_Q1_SA_NiHu_Masterprac_group10_B 48.899 34.324 863450 0 863450 0 0 0 0 + 5973 789 5884 26185 17274 17274 1 QISYNYSDLDQSNVTEETPEGEEHHPVADTENK Unmodified 3774.6405 0.6405152 1316 Q8NC51;Q8NC51-2 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 130.42 125.45 4 6.79E-41 1 85192 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.191 80.863 9936700 0 0 0 0 0 9936700 5974 1316 5885 26186 17275 17275 1 QITAQAWDGTTDYQVEETSRER Unmodified 2583.1837 0.18373762 720 O43719;E9PFP2 HTATSF1 HIV Tat-specific factor 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 130.05 129.44 3 5.9989E-06 1 82883 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.916 55.225 1898100 0 1898100 0 0 0 0 5975 720 5886 26187 17276 17276 1 QITQSALLAEAR Unmodified 1299.7147 0.71466402 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 121.45 121.15 2 0.0019188 1 77934 20150910_Q1_SA_NiHu_Masterprac_group10_B 86.262 52.721 2438000 0 2206700 0 231300 0 0 5976 1012 5887 26188;26189 17277 17277 1 QITVNDLPVGR Unmodified 1210.667 0.66698555 1044 Q06830 PRDX1 Peroxiredoxin-1 no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 2 132.08 120.43 2 5.9465E-42 5 83245 20150910_Q1_SA_NiHu_Masterprac_group10_B 134.38 69.728 94131000 20775000 40873000 18830000 7225800 6427500 0 5977 1044 5888 26190;26191;26192;26193;26194;26195 17278;17279;17280;17281;17282 17281 5 QKGTEGMEPEEGVTVESQPQVK Unmodified 2386.1322 0.13221932 706 O15446;O15446-2 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 110.33 97.649 3 0.014763 1 65674 20150910_Q1_SA_NiHu_Masterprac_group10_C 37.169 27.885 1699300 1699300 0 0 0 0 0 5978 706 5889 26196 17283 17283 1 QKLQLEK Unmodified 885.52837 0.5283668 900 P35579;P35579-2;Q7Z406-5;F2Z2S7;Q7Z406-4;F2Z2U9;Q3MIV8;P35749-3;P35749;P35580;P35749-2;P35580-2;F8W6L6;Q7Z406;P35580-3;Q7Z406-6;F8VTL3;F2Z2U8;B1PS43;Q7Z406-2;G8JLL9 MYH9;MYH14;MYH11;MYH10 Myosin-9;Myosin-14;Myosin-11;Myosin-10 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 66.314 55.535 2 0.040305 1 45377 20150910_Q1_SA_NiHu_Masterprac_group13_C 89.55 5.052 23211000 0 7849700 11738000 0 3624000 0 5979 900 5890 26197;26198;26199 17284 17284 1 QKPMNVGLSETQNGGMSQEAVGNIK Unmodified 2616.2636 0.26358462 1550 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 130.67 117.87 3 5.82E-116 3 76832 20150910_Q1_SA_NiHu_Masterprac_group10_C 125.37 113.45 50011000 16227000 0 0 0 2436700 31348000 5980 1550 5891 26200;26201;26202 17285;17286;17287 17287 3 QLAEDFLK Unmodified 962.5073 0.50729701 853 P17844;E7ETL9 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.66 126.69 2 0.0091649 1 86520 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.72 45 24200000 0 0 0 0 0 24200000 5981 853 5892 26203 17288 17288 1 QLAIGVNEVTR Unmodified 1198.667 0.66698555 1009 Q5VUC9;Q5VUC3;P78345 RPP38 Ribonuclease P protein subunit p38 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 119.81 117.48 2 0.00033456 1 79895 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.779 44.568 3520300 0 0 0 234160 0 3286200 5982 1009 5893 26204;26205 17289 17289 1 QLAVISPEK Unmodified 983.56515 0.56514624 1403 Q96KR1;B5MEH6;H0Y8W1 ZFR Zinc finger RNA-binding protein yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 97.954 89.92 2 0.0019485 3 66359 20150910_Q1_SA_NiHu_Masterprac_group15_C 126.31 68.724 28450000 5294900 6983700 2804200 2316300 4644700 6406400 5983 1403 5894 26206;26207;26208;26209;26210;26211 17290;17291;17292 17291 2 QLAVISPEKYDIK Unmodified 1502.8344 0.83444481 1403 Q96KR1;B5MEH6;H0Y8W1 ZFR Zinc finger RNA-binding protein yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 130.98 130.98 3 0.0015501 1 83946 20150910_Q1_SA_NiHu_Masterprac_group13_B 75.088 39.41 3860300 0 0 0 3860300 0 0 5984 1403 5895 26212 17293 17293 1 QLCGGSQAAIER Unmodified 1288.6194 0.61938343 69 Q96S59-2;B2R8E1;Q96S59 RANBP9 Ran-binding protein 9 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 64.836 62.754 2 0.0040879 1 43884 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.895 34.137 1473700 0 270470 0 0 0 1203300 5985 69 5896 26213;26214 17294 17294 1 QLDECASAITK Unmodified 1234.5864 0.58635197 419 E9PD53;Q9NTJ3;Q9NTJ3-2;F5H0U7 SMC4 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 4 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 87.746 76.316 2 0.033078 1 57820 20150910_Q1_SA_NiHu_Masterprac_group15_C 50.484 20.933 2673400 0 0 536990 0 628530 1507900 5986 419 5897 26215;26216;26217 17295 17295 1 QLEEEQAVRPK Unmodified 1325.6939 0.69392858 413 E9PC90;P14635;Q5TZP9 CCNB1 G2/mitotic-specific cyclin-B1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 59.374 53.307 2 0.0039795 1 38091 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.313 42.013 866110 0 134130 0 0 259940 472040 5987 413 5898 26218;26219;26220 17296 17296 1 QLEEPGAGTPSPVR Unmodified 1436.726 0.72595699 255 C9JJU9;Q96P11-2;G3V0G9;Q96P11;Q96P11-4;Q63ZY6;Q63ZY6-5;Q63ZY6-4 NSUN5;NSUN5P2 Putative methyltransferase NSUN5;Putative methyltransferase NSUN5C yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 91.846 89.79 2 0.0041826 1 61514 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.079 39.747 868200 0 0 0 0 0 868200 5988 255 5899 26221 17297 17297 1 QLETKQETHCQSTPLKK Unmodified 2055.0419 0.041888175 1533 Q9NQW6;Q9NQW6-2 ANLN Actin-binding protein anillin yes no 0 0 2 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 45.837 39.905 4 0.010387 2 29001 20150910_Q1_SA_NiHu_Masterprac_group10_C 42.095 31.48 17610000 3570600 0 8756000 0 0 5283100 5989 1533 5900 26222;26223;26224 17298;17299 17299 2 QLFHPEQLITGK Unmodified 1409.7667 0.76669959 518;44 G3V1U9;Q9BQE3;Q71U36;P68363;F5H5D3;Q6PEY2;Q13748;E9PGK3;Q13748-2;F8VVB9;Q9NY65-2;Q9NY65;C9J2C0;F8VQQ4;F8VX09;F8VWV9;F8VRZ4;F8VS66;C9K0S6;C9JDL2;C9JEV8;C9JQ00;C9JJQ8;A8MUB1;P68366 TUBA1A;TUBA1C;TUBA1B;TUBA3E;TUBA3C;TUBA8;TUBA4A Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-3E chain;Tubulin alpha-3C/D chain;Tubulin alpha-8 chain;Tubulin alpha-4A chain no no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 133.26 128.3 3 0.0015578 1 88346 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.605 52.446 23549000 0 0 0 0 0 23549000 5990 518;44 5901 26225 17300 17300 1 QLIIDAGQK Unmodified 984.5604 0.56039521 1180 Q5FWF5;Q5FWF5-2 ESCO1 N-acetyltransferase ESCO1 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 94.981 87.086 2 0.018956 4 59273 20150910_Q1_SA_NiHu_Masterprac_group13_B 70.399 10.379 15212000 1287800 2110500 2387400 1631600 2446800 5347400 5991 1180 5902 26226;26227;26228;26229;26230;26231 17301;17302;17303;17304 17301 4 QLILEGKDPDLEAK Unmodified 1567.8457 0.84573777 1662 Q9Y6V7 DDX49 Probable ATP-dependent RNA helicase DDX49 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 130.51 114.83 3 0.002991 1 76121 20150910_Q1_SA_NiHu_Masterprac_group10_C 61.532 38.064 7429900 7429900 0 0 0 0 0 5992 1662 5903 26232 17305 17305 1 QLIVGVNK Unmodified 869.53345 0.53345218 1006 Q5VTE0;P68104;F8W6I0;Q05639 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 91.858 84.096 2 0.0097754 4 57240 20150910_Q1_SA_NiHu_Masterprac_group10_B 92.47 12.008 323420000 18339000 27261000 20446000 15152000 59651000 182570000 5993 1006 5904 26233;26234;26235;26236;26237;26238 17306;17307;17308;17309 17308 4 QLKEELRLEEAK Unmodified 1484.8199 0.81985737 170 Q86YP4;B5MC40;Q86YP4-2;B4DKZ7;C9JHD7;C9JJK9 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 89.771 84.481 3 0.0056112 1 64417 20150910_Q1_SA_NiHu_Masterprac_group13_C 79.07 21.896 13779000 0 2422300 6354800 793770 0 4207800 5994 170 5905 26239;26240;26241;26242 17310 17310 1 QLLNLVVIGHVDAGK Unmodified 1574.9144 0.91442646 189 E9PS53;E9PHZ9;B7Z524;H0YDX7;Q9Y450-4;Q9Y450 HBS1L HBS1-like protein yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 94.597 87.037 3 0.0031491 1 58775 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.899 25.591 10243000 0 1402000 992040 554400 2806800 4487900 5995 189 5906 26243;26244;26245;26246;26247 17311 17311 1 QLMGQVLAK Unmodified 986.55829 0.55828672 682 I3L1L3;Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 108.38 102.81 2 0.027933 2 69954 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.465 21.088 12656000 0 2032200 0 679960 2015000 7929300 5996 682 5907 26248;26249;26250;26251 17312;17313 17312 2 QLNAIESTK Unmodified 1002.5346 0.53457439 1353 Q92576-2;Q92576;E7EVH3;E9PE34;B3KP41;D6R9X2 PHF3 PHD finger protein 3 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 65.418 55.492 2 0.016241 3 39627 20150910_Q1_SA_NiHu_Masterprac_group10_B 73.841 24.423 7667400 550180 1952300 4501200 0 663680 0 5997 1353 5908 26252;26253;26254;26255 17314;17315;17316 17316 3 QLNAIESTKIESHETANLQDDRNSQSSSVSYLESK Unmodified 3907.8672 0.8671611 1353 Q92576-2;Q92576;E7EVH3;E9PE34;B3KP41;D6R9X2 PHF3 PHD finger protein 3 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 2 130.54 130.34 4;5 0.00026566 2 83239 20150910_Q1_SA_NiHu_Masterprac_group13_B 34.824 29.531 32691000 0 12055000 0 20636000 0 0 5998 1353 5909 26256;26257;26258 17317;17318 17318 2 QLPAQPPEHAVDGEGFK Unmodified 1818.8901 0.89006221 1097 Q14151;B4DU53 SAFB2 Scaffold attachment factor B2 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 117.91 106.08 3 0.036455 1 74974 20150910_Q1_SA_NiHu_Masterprac_group15_C 35.089 21.67 8698100 550490 0 0 0 2140800 6006900 5999 1097 5910 26259;26260;26261 17319 17319 1 QLPEPLLASSGHC Unmodified 1407.6816 0.68164933 851 P17676 CEBPB CCAAT/enhancer-binding protein beta yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 133.04 115.2 2 3.0882E-05 1 82106 20150910_Q1_SA_NiHu_Masterprac_group15_C 96.229 49.852 7440000 0 0 0 0 7440000 0 6000 851 5911 26262 17320 17320 1 QLPLEPESPSGQVGPRPAPPQEESPSSEAK Unmodified 3124.5313 0.53128651 1165 Q3KQU3-2;Q3KQU3-4;Q3KQU3;E9PLH3;C9JIR3 MAP7D1 MAP7 domain-containing protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 130.36 129.75 3 0.00020774 1 83195 20150910_Q1_SA_NiHu_Masterprac_group10_B 38.986 31.092 4906600 0 4906600 0 0 0 0 6001 1165 5912 26263 17321 17321 1 QLPPNGDPNFK Unmodified 1225.6091 0.60913632 1366 Q92945-2;Q92945 KHSRP Far upstream element-binding protein 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 4 7 4 96.98 87.804 2 1.1746E-29 25 59611 20150910_Q1_SA_NiHu_Masterprac_group15_B 126.71 63.491 228350000 35359000 28626000 25425000 14723000 63193000 61025000 6002 1366 5913 26264;26265;26266;26267;26268;26269;26270;26271;26272;26273;26274;26275;26276;26277;26278;26279;26280;26281;26282;26283;26284;26285;26286;26287;26288;26289;26290 17322;17323;17324;17325;17326;17327;17328;17329;17330;17331;17332;17333;17334;17335;17336;17337;17338;17339;17340;17341;17342;17343;17344;17345;17346 17329 25 QLPSLACKYPVSSR Unmodified 1604.8345 0.83446158 913 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 121.18 113.42 2;3 0.0015255 3 75370 20150910_Q1_SA_NiHu_Masterprac_group10_C 68.972 60.664 24601000 5015800 6133200 0 1157400 2286000 10009000 6003 913 5914 26291;26292;26293;26294;26295 17347;17348;17349 17349 3 QLQATSVPHPVSRPLNNTQK Unmodified 2214.1869 0.18691293 698 O14965;A3KFJ0;Q5QPD4;A3KFJ1;Q5QPD2;Q5QPD1 AURKA Aurora kinase A yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 3 96.208 88.538 3;4 0.0001296 8 59764 20150910_Q1_SA_NiHu_Masterprac_group10_B 79.676 68.176 308170000 18975000 62144000 60630000 20751000 37925000 107740000 6004 698 5915 26296;26297;26298;26299;26300;26301;26302;26303;26304;26305;26306;26307;26308;26309 17350;17351;17352;17353;17354;17355;17356;17357 17356 8 QLQEEDLKAQAQLQK Unmodified 1768.9319 0.93192702 1277 Q8IVM0;Q8IVM0-2 CCDC50 Coiled-coil domain-containing protein 50 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 100.86 92.68 3 1.6441E-13 4 67631 20150910_Q1_SA_NiHu_Masterprac_group15_C 103.97 72.061 13391000 2104400 2254000 2979500 1015400 2021400 3016300 6005 1277 5916 26310;26311;26312;26313;26314;26315 17358;17359;17360;17361 17359 4 QLREQVNDLFSRK Unmodified 1631.8744 0.87435256 90 P78347-2;P78347-4;P78347-3;B4DH52;P78347;H7BYM4;G8JLD9;Q86UP8-3;Q86UP8;Q6EKJ0 GTF2I;GTF2IRD2B;GTF2IRD2 General transcription factor II-I;General transcription factor II-I repeat domain-containing protein 2A;General transcription factor II-I repeat domain-containing protein 2B yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 117.47 112.91 3 0.020044 1 77097 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.294 21.501 1389300 0 0 0 0 0 1389300 6006 90 5917 26316 17362 17362 1 QLRGAQYQPILRDHICK Unmodified 2095.1109 0.11091121 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 102.42 99.363 3 0.017734 1 67734 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.68 32.697 1229700 0 0 0 0 0 1229700 6007 487 5918 26317 17363 17363 1 QLSAQSYGVTSSTAR Unmodified 1554.7638 0.76379906 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 90.873 86.136 2 0.0023565 2 58199 20150910_Q1_SA_NiHu_Masterprac_group13_B 66.436 49.857 5802300 3569600 0 0 2232700 0 0 6008 531 5919 26318;26319 17364;17365 17364 2 QLSAQSYGVTSSTARR Unmodified 1710.8649 0.86491009 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 84.694 76.223 3 0.038865 1 53222 20150910_Q1_SA_NiHu_Masterprac_group10_C 32.152 3.1665 4407700 4407700 0 0 0 0 0 6009 531 5920 26320 17366 17366 1 QLSGQSTSSDTTYKGGASEK Unmodified 2030.9393 0.93925682 1591 Q9UGU0-2;Q9UGU0 TCF20 Transcription factor 20 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 46.095 45.141 3 0.010528 2 32438 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.968 27.419 546870 0 0 0 0 0 546870 6010 1591 5921 26321 17367;17368 17368 2 QLTQTTHTDKVPGDEDK Unmodified 1911.9174 0.91739917 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 54.186 49.861 3 0.0088044 1 35722 20150910_Q1_SA_NiHu_Masterprac_group10_B 44.391 33.346 2224400 0 613120 0 129900 368020 1113400 6011 919;920 5922 26322;26323;26324;26325 17369 17369 1 QLTSNTVQQHPSTPK Unmodified 1664.8482 0.84819739 440 O94916-2;O94916-3;O94916;O94916-4;E9PHR7 NFAT5 Nuclear factor of activated T-cells 5 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 65.376 55.814 3 0.0001186 1 44991 20150910_Q1_SA_NiHu_Masterprac_group15_C 87.824 72.551 6734100 1679900 0 660030 0 2385600 2008500 6012 440 5923 26326;26327;26328;26329 17370 17370 1 QLTSSELLQR Unmodified 1173.6354 0.63535107 1295 Q8N2W9 PIAS4 E3 SUMO-protein ligase PIAS4 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 116.09 103.15 2 0.013063 3 70400 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.672 12.523 5457100 0 0 598690 0 533630 4324800 6013 1295 5924 26330;26331;26332 17371;17372;17373 17373 3 QLVSKPLSSSVSNNK Unmodified 1586.8628 0.86278482 1407 Q96MU7-2;Q96MU7 YTHDC1 YTH domain-containing protein 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 77.857 70.346 3 7.5958E-21 2 48770 20150910_Q1_SA_NiHu_Masterprac_group15_B 110.25 79.916 31011000 3201800 4867600 5519800 3831200 6425200 7165000 6014 1407 5925 26333;26334;26335;26336;26337;26338 17374;17375 17374 2 QMAAEEAMK Unmodified 1007.4416 0.44160198 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 59.051 52.517 2 1.5995E-06 2 42563 20150910_Q1_SA_NiHu_Masterprac_group15_C 114.51 39.47 23976000 2056000 5742300 8534700 1678000 2059700 3905100 6015 352;968 5926 26339;26340;26341;26342;26343;26344 17376;17377 17377 2 QMGNLEDAETK Unmodified 1234.55 0.54996646 1345 Q8WYP5;Q8WYP5-3;Q8WYP5-2 AHCTF1 Protein ELYS yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 71.74 65.565 2 4.1134E-20 4 46173 20150910_Q1_SA_NiHu_Masterprac_group10_B 121.68 72.682 11350000 0 1620400 1881100 1179400 2468500 4200600 6016 1345 5927 26345;26346;26347;26348;26349;26350 17378;17379;17380;17381 17381 4 QMLDPANYGTGMER Unmodified 1581.6916 0.69156209 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.16 126.19 2 0.001978 1 86020 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.059 44.172 2268900 0 0 0 0 0 2268900 6017 919;920 5928 26351 17382 17382 1 QMLDPANYGTGMERWPRTPK Unmodified 2347.1202 0.12015527 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 132.11 132.11 4 0.020976 1 85120 20150910_Q1_SA_NiHu_Masterprac_group13_B 35.672 20.156 7560700 0 0 0 7560700 0 0 6018 919;920 5929 26352 17383 17383 1 QMPLSSAGLQNSVAK Unmodified 1529.7872 0.78717704 1280 Q8IWC1-2;Q8IWC1;H7BY77 MAP7D3 MAP7 domain-containing protein 3 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 128.09 116.71 2 0.0035379 3 77071 20150910_Q1_SA_NiHu_Masterprac_group10_C 56.514 27.611 14393000 3281600 1760200 5664900 0 801620 2884500 6019 1280 5930 26353;26354;26355;26356;26357 17384;17385;17386 17386 3 QMTCTDINTLTR Unmodified 1452.6701 0.67009837 137 Q5BJF6-8;Q5BJF6-5;Q5BJF6-6;B4DX73;Q5BJF6-7;Q5BJF6-2;Q5BJF6-3;Q5BJF6-4;Q5BJF6;Q5T4C3;Q5T4C6;Q5BJF6-9 ODF2 Outer dense fiber protein 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 117.11 105.07 2 0.0038334 1 71880 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.519 44.528 1950600 401890 0 376880 0 0 1171800 6020 137 5931 26358;26359;26360 17387 17387 1 QMVGGQQLPALAAK Unmodified 1410.7653 0.76531938 1404 Q96L73-2;Q96L73-3;Q96L73 NSD1 Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 130.16 129.85 2 5.2708E-20 1 83096 20150910_Q1_SA_NiHu_Masterprac_group10_B 109.15 43.519 14958000 0 13668000 0 1290700 0 0 6021 1404 5932 26361;26362 17388 17388 1 QNLVPFRDSK Unmodified 1202.6408 0.6407708 767 O95235;B4DL79 KIF20A Kinesin-like protein KIF20A yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 98.914 89.866 3 0.020644 1 61494 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.102 29.49 4597600 0 0 866060 674430 971140 2086000 6022 767 5933 26363;26364;26365;26366 17389 17389 1 QNQTTAISTPASSEISKAPK Unmodified 2058.0593 0.059312378 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 102.4 94.599 3 0.00014385 3 63300 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.261 66.261 20498000 0 4051400 3116500 2325400 5059400 5945100 6023 945 5934 26367;26368;26369;26370;26371 17390;17391;17392 17392 3 QNQTTSAVSTPASSETSKAPK Unmodified 2119.0393 0.039305217 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 65.784 59.835 3 0.0026458 5 43906 20150910_Q1_SA_NiHu_Masterprac_group10_C 48.616 33.885 13478000 3693600 201610 1298600 2073500 0 6210700 6024 945 5935 26372;26373;26374;26375;26376;26377 17393;17394;17395;17396;17397 17396 4 QNSVQEQPGTACLSK Unmodified 1645.773 0.77298354 1533 Q9NQW6;Q9NQW6-2 ANLN Actin-binding protein anillin yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 75.364 67.919 2;3 1.0784E-86 10 54183 20150910_Q1_SA_NiHu_Masterprac_group13_C 139.21 118.97 109450000 18444000 16403000 18693000 11890000 15814000 28202000 6025 1533 5936 26378;26379;26380;26381;26382;26383;26384;26385;26386;26387;26388;26389 17398;17399;17400;17401;17402;17403;17404;17405;17406;17407 17401 9 QNYIEDLQNGPIRK Unmodified 1686.8689 0.86893283 739 O75319 DUSP11 RNA/RNP complex-1-interacting phosphatase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 130.06 125.28 3 1.8678E-86 3 86068 20150910_Q1_SA_NiHu_Masterprac_group15_B 140.45 71.109 30201000 0 8678100 0 2238700 2175400 17109000 6026 739 5937 26390;26391;26392;26393;26394 17408;17409;17410 17409 3 QQASHYLYVR Unmodified 1263.636 0.63601977 1643 Q9Y3A4 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 86.191 78.562 3 0.004416 3 54047 20150910_Q1_SA_NiHu_Masterprac_group10_C 86.882 74.251 55595000 3356400 5111000 4033500 2005100 15290000 25799000 6027 1643 5938 26395;26396;26397;26398;26399;26400 17411;17412;17413 17413 3 QQHEAAALNAVQR Unmodified 1434.7328 0.7327737 1236 Q6UB99;H3BVB8;Q6UB98-2;Q6UB98 ANKRD11;ANKRD12 Ankyrin repeat domain-containing protein 11;Ankyrin repeat domain-containing protein 12 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 62.116 60.961 3 0.01558 1 42701 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.356 34.457 1450600 0 0 0 0 0 1450600 6028 1236 5939 26401 17414 17414 1 QQHLSQAFINQHTVER Unmodified 1934.9711 0.97110649 1304 Q8N5P1 ZC3H8 Zinc finger CCCH domain-containing protein 8 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 104.16 92.466 4 0.0022608 1 63386 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.415 39.894 5108900 1642800 0 808640 0 1159400 1498100 6029 1304 5940 26402;26403;26404;26405 17415 17415 1 QQIQSIQQSIER Unmodified 1456.7634 0.76340513 969 P55769;B1AHD1 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 111.85 102.81 2 0.00092463 5 70148 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.856 47.028 17249000 3627300 3315700 1589200 1522700 705260 6489200 6030 969 5941 26406;26407;26408;26409;26410;26411 17416;17417;17418;17419;17420 17418 5 QQLALYTEK Unmodified 1092.5815 0.58152458 907 P40222 TXLNA Alpha-taxilin yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 101.77 92.224 2 0.039895 1 62067 20150910_Q1_SA_NiHu_Masterprac_group10_B 60.064 29.24 3103300 0 2093000 1010300 0 0 0 6031 907 5942 26412;26413 17421 17421 1 QQNELAELHANLAR Unmodified 1605.8223 0.82231699 1121 Q14980-2;Q14980 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 129 124.03 3 0.014555 1 83809 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.282 23.732 8095300 0 0 0 0 0 8095300 6032 1121 5943 26414 17422 17422 1 QQPPEPEWIGDGESTSPSDKVVK Unmodified 2509.1973 0.19726242 1321;411 E9PC67;F8VQZ0;Q5STZ8;Q8NE71;Q8NE71-2;Q5STZ7 ABCF1 ATP-binding cassette sub-family F member 1 no no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 130.81 124.99 3 1.908E-08 4 85962 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.796 58.953 30510000 0 5213800 0 5804700 4402300 15090000 6033 411;1321 5944 26415;26416;26417;26418 17423;17424;17425;17426 17424 4 QQPPLAQPSASPYPEAVELQRR Unmodified 2461.2714 0.27137084 1496 Q9H6R0;Q05BE5;I3L0M5 DHX33 Putative ATP-dependent RNA helicase DHX33 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 131.79 114.05 3 0.0014801 1 80875 20150910_Q1_SA_NiHu_Masterprac_group15_C 48.376 31.23 2046000 0 0 0 0 2046000 0 6034 1496 5945 26419 17427 17427 1 QQPQPSQTESPQEAQIIQAK Unmodified 2235.1131 0.11313886 341 E5RHN2;E5RK20;O96020-2;Q8WUE3;O96020 CCNE2 G1/S-specific cyclin-E2 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 109.07 101.55 3 0.0014529 1 74062 20150910_Q1_SA_NiHu_Masterprac_group13_C 51.524 40.981 3580600 0 917650 1265400 0 0 1397600 6035 341 5946 26420;26421;26422 17428 17428 1 QQQLVSGMAER Unmodified 1245.6136 0.61356977 1298 Q8N3X1;Q8N3X1-2 FNBP4 Formin-binding protein 4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 86.272 79.052 2 0.0082479 2 54339 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.385 13.126 4924200 830680 610140 0 0 1794300 1689000 6036 1298 5947 26423;26424;26425;26426 17429;17430 17429 2 QQQMAALTKEK Unmodified 1274.6653 0.66527099 23 A6NHR9;A6NHR9-2;A6NHR9-3 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 60.028 52.137 3 4.2915E-05 4 37525 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.834 56.325 3806700 521640 345290 573120 0 989690 1376900 6037 23 5948 26427;26428;26429;26430;26431 17431;17432;17433;17434 17433 4 QQQQQQQQQQQQQQQQQQHVTSWPGKQVETLR Unmodified 3941.9229 0.92293411 1094 Q14119 VEZF1 Vascular endothelial zinc finger 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 108.79 102.51 4 0.0029374 2 67522 20150910_Q1_SA_NiHu_Masterprac_group10_B 31.252 27.834 5728700 1488600 1210400 0 0 0 3029600 6038 1094 5949 26432;26433;26434 17435;17436 17436 2 QQQREPAQTEAAASTEPATR Unmodified 2169.041 0.041036552 1308 Q8N8A6 DDX51 ATP-dependent RNA helicase DDX51 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 61.467 53.771 3 0.0037865 1 38104 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.953 34.513 3391800 0 0 0 0 2042200 1349600 6039 1308 5950 26435;26436 17437 17437 1 QQSAQSQVSTTAENK Unmodified 1605.7594 0.75944196 1477 Q9H0A0;E7ESU4;E9PMN9 NAT10 N-acetyltransferase 10 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 42.028 40.397 2 0.0012219 2 28587 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.331 43.882 984200 0 222370 0 0 0 761830 6040 1477 5951 26437;26438 17438;17439 17438 2 QQSHFAMMHGGTGFAGIDSSSPEVK Unmodified 2605.169 0.16895596 1135 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 131.29 129.43 4 9.1871E-16 4 86446 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.589 64.427 133650000 0 33121000 0 15026000 0 85506000 6041 1135 5952 26439;26440;26441 17440;17441;17442;17443 17441 4 QQSHFAMMHGGTGFAGIDSSSPEVK Oxidation (M) 2621.1639 0.16387058 1135 Q15365 PCBP1 Poly(rC)-binding protein 1 yes yes 0 1 0 By matching By matching By matching By matching By matching By MS/MS 1 124.53 119.77 4 0.0020139 1 81287 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.254 23.555 4861400 0 0 0 0 0 4861400 6042 1135 5952 26442 17444 17444 143 1 QQTDIAVNWAGGLHHAK Unmodified 1844.9282 0.92817905 1086 Q13547;Q5TEE2 HDAC1 Histone deacetylase 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 2 2 118.36 115.58 3;4 3.4651E-08 4 78923 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.716 93.716 12332000 0 2533000 0 0 0 9799200 6043 1086 5953 26443;26444;26445;26446 17445;17446;17447;17448 17447 4 QQTDIAVNWAGGLHHAKK Unmodified 1973.0231 0.023142064 1086 Q13547;Q5TEE2 HDAC1 Histone deacetylase 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 112.08 101.5 4 0.00088819 1 69177 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.788 41.189 2436100 0 0 504660 0 0 1931500 6044 1086 5954 26447;26448 17449 17449 1 QQTDMAVNWAGGLHHAK Unmodified 1862.8846 0.88459967 1358 Q92769;H3BM24;B3KRS5 HDAC2 Histone deacetylase 2;Histone deacetylase yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 2 2 1 2 2 116.56 107.03 3;4 0.0048796 2 77567 20150910_Q1_SA_NiHu_Masterprac_group13_C 46.324 31.034 22672000 251660 2721900 4468000 736550 2471300 12023000 6045 1358 5955 26449;26450;26451;26452;26453;26454;26455;26456;26457;26458 17450;17451 17450 2 QQTNNQTEVVKIIEK Unmodified 1770.9476 0.94757708 1177 Q5BKZ1;Q5BKZ1-3 ZNF326 DBIRD complex subunit ZNF326 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 117.95 106.15 3 3.1054E-13 1 72656 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.2 74.612 12054000 3037800 0 0 0 3981300 5035000 6046 1177 5956 26459;26460;26461 17452 17452 1 QQVAFYGQTLGQAQAHSQEQ Unmodified 2218.0403 0.04030827 1394 Q96I24;Q96I24-2 FUBP3 Far upstream element-binding protein 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 129.88 129.27 2 0.0062105 2 85903 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.448 47.862 3168300 0 3168300 0 0 0 0 6047 1394 5957 26462;26463 17453;17454 17453 2 QQVENRVVEEAK Unmodified 1427.7369 0.73685603 778 O96006 ZBED1 Zinc finger BED domain-containing protein 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 63.997 57.037 3 0.0041764 2 40437 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.842 36.292 11587000 998700 3976300 2050600 358890 912150 3290300 6048 778 5958 26464;26465;26466;26467;26468;26469 17455;17456 17456 2 QQVSGWTPAHVRK Unmodified 1492.7899 0.78989465 1009 Q5VUC9;Q5VUC3;P78345 RPP38 Ribonuclease P protein subunit p38 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 72.316 65.137 3 0.00058185 4 50956 20150910_Q1_SA_NiHu_Masterprac_group15_C 77.185 55.635 11323000 0 926390 3544900 1413800 2750800 2686800 6049 1009 5959 26470;26471;26472;26473;26474 17457;17458;17459;17460 17460 4 QQVVLENAAKK Unmodified 1226.6983 0.69828568 1030 Q01780;Q01780-2 EXOSC10 Exosome component 10 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 59.463 51.001 3 7.1115E-152 3 36589 20150910_Q1_SA_NiHu_Masterprac_group15_B 169.99 116.98 4270800 0 0 859550 352130 992430 2066700 6050 1030 5960 26475;26476;26477;26478;26479 17461;17462;17463 17462 3 QQYLQSIEER Unmodified 1292.6361 0.63607935 861 P21912 SDHB Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 109.67 102.46 2 0.0027003 1 69787 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.283 57.578 11363000 1043900 3439700 1205100 868570 0 4806200 6051 861 5961 26480;26481;26482;26483;26484 17464 17464 1 QRGWEEDEDPERK Unmodified 1672.7441 0.74412625 713 O43290;G3V1T2 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 59.602 52.006 3 0.010469 1 37124 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.727 15.51 1229300 0 0 0 0 429840 799440 6052 713 5962 26485;26486 17465 17465 1 QRIQPQMDMVEK Unmodified 1501.7381 0.73811836 1511 Q9HA64;F5H4E4 FN3KRP Ketosamine-3-kinase yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 91.336 89.981 3 0.0018583 1 60793 20150910_Q1_SA_NiHu_Masterprac_group10_B 77.124 48.841 2944400 0 1460400 0 411880 0 1072100 6053 1511 5963 26487;26488;26489 17466 17466 1 QRLQAFGLNPK Unmodified 1270.7146 0.71460444 1312 Q8N9T8;D3YTE0;Q8N9T8-2 KRI1 Protein KRI1 homolog yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 103.91 101.58 3 2.3258E-05 1 69326 20150910_Q1_SA_NiHu_Masterprac_group15_B 104.05 69.842 2046500 0 604150 0 0 0 1442400 6054 1312 5964 26490;26491 17467 17467 1 QRQEEPPPGPQRPDQSAAAAGPGDPK Unmodified 2680.2954 0.29535376 1437 Q9BQ61 C19orf43 Uncharacterized protein C19orf43 yes yes 0 0 2 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 71.211 66.234 4 2.5542E-16 2 51688 20150910_Q1_SA_NiHu_Masterprac_group15_C 81.696 71.748 8065300 0 2103000 0 726700 2022700 3212900 6055 1437 5965 26492;26493;26494;26495 17468;17469 17468 2 QSAERNSNLVGAAHEELQQSR Unmodified 2323.1265 0.12649752 783 P02545;P02545-3;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q3BDU5;Q5TCJ4;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 2 2 1 2 102.91 93.812 3;4 0.00063645 6 63405 20150910_Q1_SA_NiHu_Masterprac_group10_C 54.511 39.993 22160000 2099200 8001400 3305000 0 1129600 7624400 6056 783 5966 26496;26497;26498;26499;26500;26501;26502;26503;26504 17470;17471;17472;17473;17474;17475 17475 5 QSEAEVVTEIQLEK Unmodified 1601.8148 0.81483158 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 132.8 124.52 2 2.1682E-146 5 81893 20150910_Q1_SA_NiHu_Masterprac_group15_C 155.37 100.04 62598000 0 28799000 9361200 7235200 6096700 11106000 6057 1109 5967 26505;26506;26507;26508;26509 17476;17477;17478;17479;17480 17479 5 QSEENNNLQSQVQK Unmodified 1644.7703 0.770341 1258 Q86TG7-2;Q86TG7 PEG10 Retrotransposon-derived protein PEG10 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 60.028 52.734 2 0.0040399 2 43192 20150910_Q1_SA_NiHu_Masterprac_group13_C 58.32 58.32 4259300 0 0 1703800 344680 410400 1800400 6058 1258 5968 26510;26511;26512;26513 17481;17482 17481 2 QSGEAFVELGSEDDVK Unmodified 1708.7792 0.77917435 958 P52597 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 131.55 131.25 2 0 2 84359 20150910_Q1_SA_NiHu_Masterprac_group10_B 235.78 203.5 26046000 0 22071000 0 3975400 0 0 6059 958 5969 26514;26515 17483;17484 17484 2 QSGSRGGSGGGGSISGGGYGSGGGSGGR Unmodified 2255.9864 0.98637522 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 41.084 40.23 3 0.0083603 1 28564 20150910_Q1_SA_NiHu_Masterprac_group15_B 33.317 24.415 547850 0 0 0 0 0 547850 + 6060 302 5970 26516 17485 17485 1 QSGSRGGSGGGGSISGGGYGSGGGSGGRYGSGGGSK Unmodified 2949.2946 0.29457849 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 55.306 48.387 4 1.4001E-10 2 34373 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.815 32.586 9855600 0 0 4642200 1982600 995980 2234800 + 6061 302 5971 26517;26518;26519;26520 17486;17487 17487 2 QSHEPVPDTSVEK Unmodified 1451.6892 0.68923713 1609 Q9ULM3 YEATS2 YEATS domain-containing protein 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 56.92 54.938 3 0.0013734 1 38958 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.083 53.192 1208900 0 442160 0 0 0 766720 6062 1609 5972 26521;26522 17488 17488 1 QSLKNADLCIASGTK Unmodified 1604.8192 0.81920545 1042 Q06330;D6R927;Q06330-5;Q06330-4;Q06330-6;Q06330-7;Q06330-3;Q06330-2;D6RBQ8;D6RA45;D6RCM1 RBPJ Recombining binding protein suppressor of hairless yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 98.054 90.025 3 0.012919 1 61708 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.883 29.145 16693000 3463800 2556700 2420400 2715700 2446700 3089900 6063 1042 5973 26523;26524;26525;26526;26527;26528 17489 17489 1 QSLNCLTK Unmodified 962.48552 0.48551571 441 E9PHS0;O43813 LANCL1 LanC-like protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 64.121 61.111 2 0.0081354 1 43030 20150910_Q1_SA_NiHu_Masterprac_group10_B 93.649 41.159 1353200 0 1353200 0 0 0 0 6064 441 5974 26529 17490 17490 1 QSNASSDVEVEEK Unmodified 1420.6318 0.63178183 741 O75475;O75475-2 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 52.795 46.737 2 6.1638E-24 3 35080 20150910_Q1_SA_NiHu_Masterprac_group10_C 114.7 99.318 62122000 4215400 8871600 16887000 3415400 6362400 22371000 6065 741 5975 26530;26531;26532;26533;26534;26535 17491;17492;17493 17493 3 QSPGSTSPKPPHTLSRK Unmodified 1803.9591 0.95914482 462 E9PPY3;O43159 RRP8 Ribosomal RNA-processing protein 8 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 46.585 42.749 4 0.023842 1 30523 20150910_Q1_SA_NiHu_Masterprac_group10_B 50.04 33.51 3416200 0 712270 558010 210440 0 1935500 6066 462 5976 26536;26537;26538;26539 17494 17494 0 QSPQTSFPYK Unmodified 1181.5717 0.57168818 1280 Q8IWC1-2;Q8IWC1;H7BY77;Q8IWC1-3 MAP7D3 MAP7 domain-containing protein 3 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 95.731 88.15 2 1.2281E-23 2 60397 20150910_Q1_SA_NiHu_Masterprac_group15_B 126.03 81.045 15394000 0 2524800 2634800 1273900 2854600 6105700 6067 1280 5977 26540;26541;26542;26543;26544 17495;17496 17495 2 QSQESRMPETVPQEEMPGPPLNSESGEEAPTGRDK Unmodified 3823.7265 0.72651021 706 O15446;O15446-2 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 130.82 125.86 4 0.00012319 1 85593 20150910_Q1_SA_NiHu_Masterprac_group15_B 31.224 26.732 3276500 0 0 0 0 0 3276500 6068 706 5978 26545 17497 17497 1 QSQETEARPSIMK Unmodified 1503.7351 0.73514147 1118 Q14966-3;Q14966;Q14966-5;F5H6M8;E7EUZ3 ZNF638 Zinc finger protein 638 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 68.004 60.794 3 8.9966E-06 3 48148 20150910_Q1_SA_NiHu_Masterprac_group15_C 99.732 76.021 13803000 1473900 2161200 2791300 1033900 1766800 4576100 6069 1118 5979 26546;26547;26548;26549;26550;26551 17498;17499;17500 17499 3 QSRLDELRGQDEGK Unmodified 1629.8071 0.80706086 749 O75683 SURF6 Surfeit locus protein 6 yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 65.334 59.869 3 0.0054221 2 47583 20150910_Q1_SA_NiHu_Masterprac_group15_C 67.519 45.744 4332900 0 0 0 767320 1083400 2482200 6070 749 5980 26552;26553;26554 17501;17502 17502 1 QSSLASASFLPK Unmodified 1234.6558 0.65575216 105 I3L3A5;B4DMI6;Q5MNZ6 WDR45B;WDR45L WD repeat domain phosphoinositide-interacting protein 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.42 131.81 2 0.0018734 1 85307 20150910_Q1_SA_NiHu_Masterprac_group10_B 84.734 42.523 8840600 0 8840600 0 0 0 0 6071 105 5981 26555 17503 17503 1 QSSSTNYTNELK Unmodified 1370.6314 0.6313879 107 F8VQE1;Q9UHB6-2;B4DN52;Q9UHB6;Q9UHB6-4;F8VRN8 LIMA1 LIM domain and actin-binding protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 78.654 69.48 2 0.0026133 2 48655 20150910_Q1_SA_NiHu_Masterprac_group10_B 73.881 48.408 4412800 0 769390 372910 0 804690 2465800 6072 107 5982 26556;26557;26558;26559 17504;17505 17505 2 QSSSTNYTNELKASGGEIK Unmodified 2012.9651 0.96507764 107 F8VQE1;Q9UHB6-2;B4DN52;Q9UHB6;Q9UHB6-4;F8VRN8 LIMA1 LIM domain and actin-binding protein 1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 108.13 97.439 3 0.032267 1 71780 20150910_Q1_SA_NiHu_Masterprac_group13_C 34.649 21.481 6287000 1540900 2794300 1951800 0 0 0 6073 107 5983 26560;26561;26562 17506 17506 1 QSSVTQVTEQSPK Unmodified 1417.7049 0.7048872 1118 Q14966-3;Q14966;Q14966-4;Q14966-2;C9JBI6;F5H330;C9JWN0 ZNF638 Zinc finger protein 638 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 68.172 60.961 2 0.0019861 2 44505 20150910_Q1_SA_NiHu_Masterprac_group10_C 83.856 50.924 12917000 1194400 2510200 2023700 765070 2231100 4192100 6074 1118 5984 26563;26564;26565;26566;26567;26568 17507;17508 17508 2 QSSVTQVTEQSPKVQSR Unmodified 1887.965 0.96501806 1118 Q14966-3;Q14966;Q14966-4;Q14966-2;C9JBI6;F5H330;C9JWN0 ZNF638 Zinc finger protein 638 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 2 75.406 70.984 3 0.010705 1 49326 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.947 12.463 3992000 0 699770 956910 453750 0 1881600 6075 1118 5985 26569;26570;26571;26572;26573 17509 17509 1 QSTDEEVTSLAK Unmodified 1306.6252 0.62523989 864 P23193-2;P23193;E5RIS7;E5RJ93 TCEA1 Transcription elongation factor A protein 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 91.949 84.187 2 0.0038962 1 62439 20150910_Q1_SA_NiHu_Masterprac_group15_C 67.118 42.051 4758100 272570 758050 356160 410860 1523800 1436700 6076 864 5986 26574;26575;26576;26577;26578;26579 17510 17510 1 QSVEADINGLRR Unmodified 1356.711 0.71097563 298;834 P13645;CON__P13645;CON__P02535-1;CON__P08730-1;Q7Z3Y8;CON__Q7Z3Y8;P13646;CON__P13646-1;P13646-2;C9JA77;P13646-3;CON__ENSEMBL:ENSP00000377550 KRT10;KRT27;KRT13 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 27;Keratin, type I cytoskeletal 13 no no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 108.31 98.658 3 0.032886 1 65435 20150910_Q1_SA_NiHu_Masterprac_group10_B 39.625 20.169 2918600 0 1492200 1426400 0 0 0 + 6077 298;834 5987 26580;26581 17511 17511 1 QSVLCGSQNIVLNGK Unmodified 1615.8352 0.83518986 632 H3BUD2;H3BS05;H3BQA4;H3BN51;H3BR94;Q9BTE1 DCTN5 Dynactin subunit 5 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 130.19 129.59 2 4.8344E-09 1 83051 20150910_Q1_SA_NiHu_Masterprac_group10_B 100.18 55.215 7851000 0 7851000 0 0 0 0 6078 632 5988 26582 17512 17512 1 QTAEETGLTPLETSR Unmodified 1631.8002 0.80024414 1068 Q5T8C6;Q7Z651;Q13042-3;Q13042-2;Q13042 CDC16 Cell division cycle protein 16 homolog yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 119.62 106.25 2 2.3627E-42 3 72639 20150910_Q1_SA_NiHu_Masterprac_group15_B 119.65 99.126 4816300 749720 0 448870 0 1357500 2260300 6079 1068 5989 26583;26584;26585;26586 17513;17514;17515 17513 3 QTALLDADDPVSQLHK Unmodified 1749.8897 0.88972785 1042 Q06330;D6R927;Q06330-5;Q06330-4;Q06330-6;Q06330-7;Q06330-3;Q06330-2;H0Y8R3 RBPJ Recombining binding protein suppressor of hairless yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 132.17 125.08 3 0 3 84430 20150910_Q1_SA_NiHu_Masterprac_group10_B 203.05 183.36 129700000 66649000 40160000 0 0 0 22890000 6080 1042 5990 26587;26588;26589 17516;17517;17518 17517 3 QTASIFKQPVTK Unmodified 1346.7558 0.75580056 776;1581 Q9UBB5;O95983;O95983-2 MBD2;MBD3 Methyl-CpG-binding domain protein 2;Methyl-CpG-binding domain protein 3 no no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 88.02 85.938 2;3 0.0018648 2 58294 20150910_Q1_SA_NiHu_Masterprac_group10_B 83.226 38.614 3715000 0 1761300 0 0 0 1953600 6081 1581;776 5991 26590;26591 17519;17520 17520 2 QTDVTGEEELTKGK Unmodified 1533.7522 0.75223132 1109 Q14676;Q14676-3;F8VV34;E7EVA7 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 72.316 66.684 3 0.040612 1 46559 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.094 32.066 1677600 0 0 0 157430 804210 715940 6082 1109 5992 26592;26593;26594 17521 17521 0 QTETEMLYGSAPR Unmodified 1481.682 0.68204326 676 H9KV59;O43663;O43663-2;H0YL53;G3V3N7 PRC1 Protein regulator of cytokinesis 1 no no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 115.68 104.9 2 0.0021953 1 71640 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.513 57.924 2285400 0 0 419320 0 0 1866100 6083 676 5993 26595;26596 17522 17522 1 QTETEMLYGSAPRTPSK Unmodified 1894.9095 0.90947702 676 H9KV59;O43663;O43663-2;H0YL53;G3V3N7 PRC1 Protein regulator of cytokinesis 1 no no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 106.88 98.118 3 0.0015833 3 65174 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.15 45.996 11973000 979130 1361200 2436800 1222700 2403600 3569500 6084 676 5994 26597;26598;26599;26600;26601;26602 17523;17524;17525 17525 3 QTFPEHCSLCK Unmodified 1405.6119 0.61185521 1602 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 82.015 70.753 3 0.011286 1 49082 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.691 51.479 2670800 0 0 395080 0 643230 1632500 6085 1602 5995 26603;26604;26605 17526 17526 1 QTIDNSQGAYQEAFDISK Unmodified 2013.928 0.92796385 883 P27348;B4DMT8 YWHAQ 14-3-3 protein theta yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.3 131.69 2 0.024661 1 85218 20150910_Q1_SA_NiHu_Masterprac_group10_B 37.285 24.56 2291000 0 2291000 0 0 0 0 6086 883 5996 26606 17527 17527 1 QTMLFSATQTR Unmodified 1282.634 0.63397086 1550 Q9NVP1;F5H863;H7C452 DDX18 ATP-dependent RNA helicase DDX18 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 124.8 112.2 2 0.0052347 2 78661 20150910_Q1_SA_NiHu_Masterprac_group15_C 73.082 28.468 5605800 364520 0 0 0 3301400 1939800 6087 1550 5997 26607;26608;26609 17528;17529 17529 2 QTMLFSATQTRK Unmodified 1410.7289 0.72893388 1550 Q9NVP1;F5H863;H7C452 DDX18 ATP-dependent RNA helicase DDX18 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 2 3 2 103.78 90.976 2;3 7.7833E-11 4 62147 20150910_Q1_SA_NiHu_Masterprac_group15_B 107.09 76.024 14044000 0 0 1001700 0 4038200 9003900 6088 1550 5998 26610;26611;26612;26613;26614;26615;26616 17530;17531;17532;17533 17531 3 QTPAPAASVTGSR Unmodified 1241.6364 0.6364137 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 64.689 58.815 2 0.0022329 7 41197 20150910_Q1_SA_NiHu_Masterprac_group13_B 65.495 27.527 110020000 17676000 15158000 0 6212500 26507000 44469000 6089 919;920 5999 26617;26618;26619;26620;26621;26622 17534;17535;17536;17537;17538;17539;17540 17534 7 QTPDSGKPLKISR Unmodified 1425.794 0.79397698 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 58.278 51.949 3 0.0099573 2 37249 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.966 33.827 3066200 560610 666630 1003400 0 0 835520 6090 919;920 6000 26623;26624;26625;26626 17541;17542 17542 2 QTPSRQPPLPHR Unmodified 1412.7637 0.7636799 1045 Q07666;Q07666-3 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 2 1 60.014 52.018 3 0.025265 3 42408 20150910_Q1_SA_NiHu_Masterprac_group15_C 72.152 36.475 20030000 0 2785300 3623000 0 4869600 8752400 6091 1045 6001 26627;26628;26629;26630;26631 17543;17544;17545 17544 3 QTRVNPHSLPDPEVNEQSSSK Unmodified 2348.1357 0.13566522 1428 Q99575;E5RK39 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 89.623 83.933 4 0.032351 1 57730 20150910_Q1_SA_NiHu_Masterprac_group10_C 44.595 38.796 2038600 1326700 711860 0 0 0 0 6092 1428 6002 26632;26633 17546 17546 0 QTTCWDGVRNYQAR Unmodified 1753.7955 0.79545031 1570 Q9P016;Q9P016-2 THYN1 Thymocyte nuclear protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 92.583 90.5 3 0.0079079 1 61978 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.79 34.591 15768000 0 3536600 0 0 0 12232000 6093 1570 6003 26634;26635 17547 17547 1 QTTITSHFAK Unmodified 1132.5877 0.58767259 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 68.628 62.06 2 0.0087566 1 43628 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.201 42.82 2879100 0 544850 0 0 351210 1983000 6094 487 6004 26636;26637;26638 17548 17548 1 QTVAVGVIK Unmodified 913.55967 0.55966693 1006 Q5VTE0;P68104;Q6IQ15;Q05639 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 96.661 88.648 2 0.019216 4 60610 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.256 9.4274 112480000 8381900 14063000 6238000 6639600 24847000 52306000 6095 1006 6005 26639;26640;26641;26642;26643;26644 17549;17550;17551;17552 17550 4 QTVAVGVIKAVDK Unmodified 1326.7871 0.78710068 1006 Q5VTE0;P68104;Q6IQ15 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 1 2 118.87 110.14 2;3 1.8324E-24 9 72012 20150910_Q1_SA_NiHu_Masterprac_group13_B 118.52 80.583 504490000 95677000 101670000 95642000 59165000 3631600 148710000 6096 1006 6006 26645;26646;26647;26648;26649;26650;26651;26652;26653;26654;26655 17553;17554;17555;17556;17557;17558;17559;17560;17561 17553 9 QTVAVGVIKAVDKK Unmodified 1454.8821 0.8820637 1006 Q5VTE0;P68104;Q6IQ15 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 106.33 96.539 2;3 6.5624E-19 3 64533 20150910_Q1_SA_NiHu_Masterprac_group10_C 110.44 88.888 33409000 879620 0 3464800 9924300 4943600 14197000 6097 1006 6007 26656;26657;26658;26659;26660 17562;17563;17564 17564 3 QTYSTEPNNLKAR Unmodified 1520.7583 0.75831975 926 P46779;C9JB50;G5E9L2;H0YLP6;H0YMF4;P46779-2;E9PB24;H0YKD8 RPL28 60S ribosomal protein L28 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 62.667 57.302 3 0.0022764 3 40384 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.023 53.227 7657700 1507700 917050 1000600 2094100 0 2138300 6098 926 6008 26661;26662;26663;26664;26665 17565;17566;17567 17566 3 QVAASPAVGQPLQKEPSLHLDTPSK Unmodified 2597.3813 0.38131522 1351 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 130.88 125.56 4 2.076E-38 3 85767 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.51 80.269 62310000 9079600 16928000 0 10454000 0 25848000 6099 1351 6009 26666;26667;26668;26669 17568;17569;17570 17568 3 QVCGDSIKPEETEQEVAADETR Unmodified 2490.118 0.11802582 1389 Q96GM8;B4DEM6 TOE1 Target of EGR1 protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 110.42 102.8 3 0.0035201 3 67899 20150910_Q1_SA_NiHu_Masterprac_group10_B 47.155 32.265 4260900 0 1643200 1252500 0 0 1365200 6100 1389 6010 26670;26671;26672 17571;17572;17573 17573 3 QVDESGTKVDEYGAK Unmodified 1624.758 0.75804498 856 P19447 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 66.684 56.524 3 0.03914 1 39946 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.199 24.686 1911500 0 0 424500 0 432130 1054900 6101 856 6011 26673;26674;26675 17574 17574 1 QVETEEAGVVTTATASVNLK Unmodified 2046.0481 0.04807899 741 O75475;O75475-2 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 133.11 124.96 2 0 2 79251 20150910_Q1_SA_NiHu_Masterprac_group10_C 212.26 185.22 52649000 42581000 10068000 0 0 0 0 6102 741 6012 26676;26677 17575;17576 17576 2 QVEVLAENIQDTK Unmodified 1485.7675 0.76748745 1415 Q96QE3;Q96QE3-2 ATAD5 ATPase family AAA domain-containing protein 5 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 117.58 114.85 2 0.037466 1 78061 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.377 27.397 1724300 0 792810 0 0 0 931450 6103 1415 6013 26678;26679 17577 17577 0 QVGVGYVDSIQR Unmodified 1319.6834 0.68336389 162 B4E2Z2;P43246;E9PHA6;E7EU21;E7EQQ1;C9J809 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 115.22 112 2 0.022435 1 73200 20150910_Q1_SA_NiHu_Masterprac_group10_B 50.897 14.266 4121200 0 2203400 0 0 0 1917800 6104 162 6014 26680;26681 17578 17578 1 QVGVGYVDSIQRK Unmodified 1447.7783 0.77832691 162 B4E2Z2;P43246;E9PHA6;E7EU21;E7EQQ1;C9J809 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 2 104.95 96.956 2;3 0.0011554 8 64537 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.538 33.971 86780000 922280 12900000 7533800 7530600 8108900 49784000 6105 162 6015 26682;26683;26684;26685;26686;26687;26688;26689;26690 17579;17580;17581;17582;17583;17584;17585;17586 17585 7 QVIAGVGALEQEHAQYK Unmodified 1839.9479 0.94791144 556 F8W6X8;Q14644 RASA3 Ras GTPase-activating protein 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 129.08 124.11 3 0.0014677 2 83863 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.978 61.659 1590500 0 0 0 0 0 1590500 6106 556 6016 26691 17587;17588 17588 2 QVISTGIQPHGETAAK Unmodified 1635.858 0.8580338 1147 Q15776 ZKSCAN8 Zinc finger protein with KRAB and SCAN domains 8 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 85.816 74.486 3 0.022073 1 51600 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.517 14.986 3184600 0 0 444480 0 840850 1899300 6107 1147 6017 26692;26693;26694 17589 17589 1 QVISTSSDAESR Unmodified 1278.6052 0.60517315 474 F2Z2E1;Q96EK7;F5GZX9;F5GY05;Q96EK7-2 FAM120B Constitutive coactivator of peroxisome proliferator-activated receptor gamma yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 49.238 47.456 2 0.01106 1 33730 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.098 49.102 1751100 0 589160 0 0 0 1162000 6108 474 6018 26695;26696 17590 17590 1 QVLLSAAEAAEVILRVDNIIK Unmodified 2264.3104 0.31038211 1010 P78371-2;P78371 CCT2 T-complex protein 1 subunit beta yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 134.17 133.56 3 2.1323E-06 1 87394 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.287 54.086 390630000 0 390630000 0 0 0 0 6109 1010 6019 26697 17591 17591 1 QVLQVAHLVK Unmodified 1133.6921 0.69207809 1675 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 2 2 1 71.89 64.25 2 0.004649 2 44862 20150910_Q1_SA_NiHu_Masterprac_group10_B 87.639 9.0831 18338000 0 6775300 9486400 2076400 0 0 + 6110 1675 6020 26698;26699;26700;26701;26702 17592;17593 17593 2 QVLSGSGESVTK Unmodified 1190.6143 0.61428128 1618 Q9UNY4 TTF2 Transcription termination factor 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 67.409 57.082 2 0.029819 1 40501 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.606 30.693 6688100 0 0 2049500 0 1552100 3086600 6111 1618 6021 26703;26704;26705 17594 17594 1 QVLVAPGNAGTACSEK Unmodified 1600.7879 0.78790532 239 C9JBJ1;C9JTV6;F8WD69;P22102-2;P22102;C9JZG2;C9JKQ7 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 91.974 84.211 2 0.0015194 7 57500 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.326 41.381 33841000 3092700 6037900 5950300 3918400 5748200 9093800 6112 239 6022 26706;26707;26708;26709;26710;26711 17595;17596;17597;17598;17599;17600;17601 17597 7 QVNYNDGSQEDR Unmodified 1423.5964 0.59639938 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 38.955 38.102 2 0.0034305 1 26885 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.089 56.904 513670 0 0 0 0 0 513670 6113 486 6023 26712 17602 17602 1 QVSSHIQVLARK Unmodified 1364.7888 0.78883202 1429 Q99594 TEAD3 Transcriptional enhancer factor TEF-5 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 72.45 65.072 3 0.0043096 7 52646 20150910_Q1_SA_NiHu_Masterprac_group13_C 60.691 49.744 23642000 2130200 1773900 2577100 1789500 6649700 8722100 6114 1429 6024 26713;26714;26715;26716;26717;26718 17603;17604;17605;17606;17607;17608;17609 17605 7 QVSSHLQVLAR Unmodified 1236.6939 0.693869 606 H0Y3A6 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 2 1 1 89.723 81.734 2;3 0.0021191 8 56034 20150910_Q1_SA_NiHu_Masterprac_group13_B 87.568 54.378 63104000 8330500 4582800 3264500 4724600 14665000 27536000 6115 606 6025 26719;26720;26721;26722;26723;26724;26725;26726;26727 17610;17611;17612;17613;17614;17615;17616;17617 17611 8 QWGWTQGRWPK Unmodified 1428.7051 0.70510239 855 P18621;B4E3C2 RPL17 60S ribosomal protein L17 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 132.42 132.42 3 0.012541 1 85457 20150910_Q1_SA_NiHu_Masterprac_group13_B 62.166 62.166 5103000 0 0 0 5103000 0 0 6116 855 6026 26728 17618 17618 1 QYADVEGF Unmodified 927.39741 0.39741221 984 P61978-3;P61978-2;B4DFF1 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.01 126.05 1 2.9646E-142 1 85811 20150910_Q1_SA_NiHu_Masterprac_group15_B 175.75 150.3 6124200 0 0 0 0 0 6124200 6117 984 6027 26729 17619 17619 1 QYDEALNKQDWVDGEPTEAEK Unmodified 2464.103 0.10302769 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 128.45 116.33 3 2.6763E-09 2 79039 20150910_Q1_SA_NiHu_Masterprac_group10_B 85.087 75.601 9239300 0 2585000 5363700 0 1290600 0 6118 1012 6028 26730;26731;26732 17620;17621 17621 2 QYESLPATHIR Unmodified 1313.6728 0.67279921 331 E7EQY4;Q9BTC8-2;D6W5A2;F8W8M8;E7EV10;Q9BTC8;E9PCS8 MTA3 Metastasis-associated protein MTA3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 90.262 88.28 3 0.016783 1 59664 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.721 33.035 4921400 0 1338700 0 0 0 3582700 6119 331 6029 26733;26734 17622 17622 1 QYGAYREQPLPAQDPVSVKEEPEAEVR Unmodified 3084.5152 0.51524252 730 O60479 DLX3 Homeobox protein DLX-3 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 130.27 125.31 4 0.0022549 1 85052 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.512 24.533 3625000 0 0 0 0 0 3625000 6120 730 6030 26735 17623 17623 1 QYRVEVYKNR Unmodified 1353.7153 0.71533272 162 B4E2Z2;P43246;E9PHA6;E7EU21;E7EQQ1;C9J809 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 58.236 56.254 3 0.025218 1 39805 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.647 57.529 1622600 0 545870 0 0 0 1076700 6121 162 6031 26736;26737 17624 17624 1 QYSSRDLPSHTK Unmodified 1417.695 0.69499121 1569 Q9P013 CWC15 Spliceosome-associated protein CWC15 homolog yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 49.028 43.337 3 0.013906 1 30983 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.98 14.597 10602000 1607400 1469700 1948700 988610 1638700 2949100 6122 1569 6032 26738;26739;26740;26741;26742;26743 17625 17625 1 QYYQQPTATAAAVAAAAQPQPSVAETYYQTAPK Unmodified 3483.6947 0.69466345 1403 Q96KR1;B5MEH6 ZFR Zinc finger RNA-binding protein yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 133.38 115.53 3 1.1272E-52 1 82461 20150910_Q1_SA_NiHu_Masterprac_group15_C 95.152 86.848 34217000 0 0 0 0 34217000 0 6123 1403 6033 26744 17626 17626 1 RAAALEACLDVTKQK Unmodified 1672.893 0.89303909 526 F5H727;Q9H0G5;H7BYM1 NSRP1 Nuclear speckle splicing regulatory protein 1 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 100.06 91.926 3 1.1669E-69 6 61811 20150910_Q1_SA_NiHu_Masterprac_group10_B 131.72 109.81 19148000 2238100 3141900 5022200 2326500 2822300 3597400 6124 526 6034 26745;26746;26747;26748;26749;26750 17627;17628;17629;17630;17631;17632 17631 6 RAAEEEPSTSATVPMSK Unmodified 1789.8516 0.85162779 1079 Q13356;H7C2D2 PPIL2 Peptidyl-prolyl cis-trans isomerase-like 2;Peptidyl-prolyl cis-trans isomerase yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 79.872 72.343 3 4.7706E-08 5 56990 20150910_Q1_SA_NiHu_Masterprac_group13_C 92.096 77.925 39695000 4310100 6551500 6502800 5438700 6434800 10457000 6125 1079 6035 26751;26752;26753;26754;26755;26756 17633;17634;17635;17636;17637 17634 5 RAAPPPGQSQAQSQGQPVPTAPAR Unmodified 2396.2309 0.23090301 1234 Q6STE5;C9JYI7;Q6STE5-2 SMARCD3 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 79.032 69.606 3 0.03937 1 48531 20150910_Q1_SA_NiHu_Masterprac_group10_B 25.924 17.999 754590 0 444580 0 0 310010 0 6126 1234 6036 26757;26758 17638 17638 1 RAASVAAATTSPTPR Unmodified 1455.7794 0.77938954 1631 Q9Y2D9 ZNF652 Zinc finger protein 652 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 52.166 51.112 3 9.3585E-09 1 36530 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.38 60.706 0 0 0 0 0 0 0 6127 1631 6037 26759 17639 17639 1 RAATLAQELEK Unmodified 1228.6776 0.67755023 1110 Q14683;G8JLG1 SMC1A Structural maintenance of chromosomes protein 1A yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 89.765 82.325 2 0.017169 1 63048 20150910_Q1_SA_NiHu_Masterprac_group13_C 82.417 2.3151 6658900 0 1719400 700340 736110 783610 2719400 6128 1110 6038 26760;26761;26762;26763;26764 17640 17640 1 RAAVGQESPGGLEAGNAK Unmodified 1710.8649 0.86491009 1159 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 72.49 61.661 3 0.00477 1 43158 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.633 24.22 2435800 0 0 626860 0 655470 1153500 6129 1159 6039 26765;26766;26767 17641 17641 1 RAAVGQESPGGLEAGNAKAPK Unmodified 2007.0498 0.049750745 1159 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 1 2 71.744 64.988 3;4 1.1582E-90 11 45252 20150910_Q1_SA_NiHu_Masterprac_group15_B 125.03 108.65 61131000 8526200 9840500 9626500 6124900 8654500 18359000 6130 1159 6040 26768;26769;26770;26771;26772;26773;26774;26775;26776;26777;26778;26779 17642;17643;17644;17645;17646;17647;17648;17649;17650;17651;17652 17646 11 RAAVLLEQERQQEIAK Unmodified 1881.0432 0.043208804 1083 Q13435;E9PJ04;H0YCG1;E9PJT3 SF3B2 Splicing factor 3B subunit 2 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 92.746 85.226 3 0.00068273 2 57748 20150910_Q1_SA_NiHu_Masterprac_group10_B 85.163 67.598 25633000 0 5325700 8014900 3693700 200550 8398400 6131 1083 6041 26780;26781;26782;26783;26784 17653;17654 17654 2 RACAAGTPAVIR Unmodified 1241.6663 0.66627404 18 A6NEM2;P51610-2;P51610 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 59.815 57.733 3 0.0069166 1 40867 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.205 42.771 1782500 0 470210 0 0 0 1312300 6132 18 6042 26785;26786 17655 17655 1 RACASPSAQVEGSPVAGSDGSQPAVK Unmodified 2512.1976 0.19761355 1587 Q9UFC0 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 94.35 84.949 3 0.0096838 2 58198 20150910_Q1_SA_NiHu_Masterprac_group15_B 32.548 32.548 6152000 0 1302500 1317500 0 946850 2585200 6133 1587 6043 26787;26788;26789;26790 17656;17657 17656 2 RADESHFLIENSTK Unmodified 1645.806 0.80599822 1351 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 89.89 82.45 3 7.4651E-30 3 56110 20150910_Q1_SA_NiHu_Masterprac_group10_B 113.67 70.358 17644000 0 3091100 2317500 2156200 3233800 6845500 6134 1351 6044 26791;26792;26793;26794;26795 17658;17659;17660 17660 3 RADESHFLIENSTKEER Unmodified 2059.9923 0.99229545 1351 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 87.606 79.57 3;4 7.8804E-08 11 54548 20150910_Q1_SA_NiHu_Masterprac_group10_C 92.236 77.981 29012000 3160700 3002800 5608100 5369200 5402900 6468100 6135 1351 6045 26796;26797;26798;26799;26800;26801;26802;26803;26804;26805 17661;17662;17663;17664;17665;17666;17667;17668;17669;17670;17671 17671 11 RADLQSTFSGGRIPK Unmodified 1631.8744 0.87435256 1193 Q5T670;Q7L590-2;Q7L590 MCM10 Protein MCM10 homolog yes no 0 0 2 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 106.67 98.724 3 0.0019137 4 71099 20150910_Q1_SA_NiHu_Masterprac_group15_C 73.833 55.443 5816100 0 1713400 1200600 1022500 1583300 296310 6136 1193 6046 26806;26807;26808;26809;26810 17672;17673;17674;17675 17674 4 RAFLIEEQKIVVK Unmodified 1571.9399 0.93991293 933 P49207 RPL34 60S ribosomal protein L34 yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 128.57 128.57 3 0.028198 1 81966 20150910_Q1_SA_NiHu_Masterprac_group13_B 56.569 32.635 2108100 0 0 0 2108100 0 0 6137 933 6047 26811 17676 17676 1 RAFQLEEGEETEPDCK Unmodified 1936.8473 0.84727069 904 P38432 COIL Coilin yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 99.637 91.507 3 3.8067E-27 7 66939 20150910_Q1_SA_NiHu_Masterprac_group15_C 110.32 110.32 50774000 6743700 10236000 9011000 3555900 8312600 12915000 6138 904 6048 26812;26813;26814;26815;26816;26817 17677;17678;17679;17680;17681;17682;17683 17680 7 RAFQLEEGEETEPDCKYSK Unmodified 2315.0376 0.037590658 904 P38432 COIL Coilin yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 1 2 99.88 92.57 3;4 9.5819E-10 8 63254 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.604 63.244 62739000 26391000 5752400 15538000 6103000 2022800 6931800 6139 904 6049 26818;26819;26820;26821;26822;26823;26824;26825;26826;26827;26828 17684;17685;17686;17687;17688;17689;17690;17691 17687 8 RAGAVQNTNDSSALSK Unmodified 1617.8071 0.80706086 650 H3BU01;O60294 LCMT2 Leucine carboxyl methyltransferase 2 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 44.807 39.484 3 0.0012968 2 28103 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.768 40.742 2810200 402510 405710 659590 341850 389070 611410 6140 650 6050 26829;26830;26831;26832;26833;26834 17692;17693 17692 2 RAGTCCANCQTTTTTLWRR Unmodified 2313.0525 0.052486411 869 P23769 GATA2 Endothelial transcription factor GATA-2 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 91.159 83.699 4 0.039467 1 57413 20150910_Q1_SA_NiHu_Masterprac_group15_B 32.998 21.802 8583600 0 1045900 1745000 1016700 1663100 3112900 6141 869 6051 26835;26836;26837;26838;26839 17694 17694 1 RALASFNQEER Unmodified 1319.6582 0.65821178 1303 Q8N5F7;Q5M9Q1 NKAP;NKAPL NF-kappa-B-activating protein;NKAP-like protein yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 73.182 65.788 3 0.0010505 7 45982 20150910_Q1_SA_NiHu_Masterprac_group10_B 89.356 70.732 10546000 898660 1581100 1444900 576010 1879300 4166100 6142 1303 6052 26840;26841;26842;26843;26844;26845 17695;17696;17697;17698;17699;17700;17701 17700 7 RALASNTSFFSGCSPIEEEAH Unmodified 2309.0383 0.03825936 768 O95239;F5H4Q9;Q2VIQ3 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 132.98 132.98 3 2.26E-111 1 85995 20150910_Q1_SA_NiHu_Masterprac_group13_B 131.31 107.94 19014000 0 0 0 19014000 0 0 6143 768 6053 26846 17702 17702 1 RALDFTDSQENEEK Unmodified 1680.7591 0.75910761 755 O94782;C9JWX4;C9JC88 USP1 Ubiquitin carboxyl-terminal hydrolase 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 84.1 76.768 3 5.1539E-08 2 53153 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.273 84.755 5648100 223270 1590600 1776500 0 0 2057700 6144 755 6054 26847;26848;26849;26850 17703;17704 17703 2 RALERDPTEDDVESK Unmodified 1758.8384 0.83842057 170 Q86YP4;B5MC40;Q86YP4-2;C9JHD7;C9JJK9;C9JVY3;C9JMI3;C9JGN4 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 1 2 57.385 51.569 3;4 7.6621E-21 9 36648 20150910_Q1_SA_NiHu_Masterprac_group15_B 109.83 87.297 123090000 2631400 31977000 40149000 3416300 1038000 43877000 6145 170 6055 26851;26852;26853;26854;26855;26856;26857;26858;26859;26860;26861 17705;17706;17707;17708;17709;17710;17711;17712;17713 17710 9 RALGAHLEAEPK Unmodified 1290.7044 0.70443369 1546 Q9NUQ3;Q9NUQ3-2 TXLNG Gamma-taxilin yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 2 57.059 49.891 3 0.00093377 2 35088 20150910_Q1_SA_NiHu_Masterprac_group10_C 80.014 37.539 9012900 9012900 0 0 0 0 0 6146 1546 6056 26862;26863 17714;17715 17714 2 RALLNLPGTQTSGEAK Unmodified 1654.9002 0.90023296 1389 Q96GM8;B4DEM6 TOE1 Target of EGR1 protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 3 125.12 115.76 3 1.9662E-07 8 77507 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.952 71.986 141370000 18322000 30358000 39393000 8012600 4128800 41151000 6147 1389 6057 26864;26865;26866;26867;26868;26869;26870;26871;26872 17716;17717;17718;17719;17720;17721;17722;17723 17718 8 RALLNLPGTQTSGEAKDGPPK Unmodified 2149.1491 0.14913044 1389 Q96GM8;B4DEM6 TOE1 Target of EGR1 protein 1 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 2 119.94 108.14 3;4 4.5997E-22 8 74194 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.234 88.498 30978000 7128300 1459700 10350000 0 6192900 5846900 6148 1389 6058 26873;26874;26875;26876;26877;26878;26879;26880 17724;17725;17726;17727;17728;17729;17730;17731 17726 8 RANPQVGVAFPHIK Unmodified 1532.8576 0.85758029 830 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 2 117.48 112.92 3 0.00084285 2 77011 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.171 53.229 1518600 0 0 0 0 0 1518600 6149 830 6059 26881;26882 17732;17733 17732 2 RAPASSAPQPKPLK Unmodified 1446.8307 0.83069683 424 E9PE58;Q15345-3;Q15345 LRRC41 Leucine-rich repeat-containing protein 41 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 47.329 42.987 3 0.010943 2 35244 20150910_Q1_SA_NiHu_Masterprac_group13_C 59.225 45.807 7405600 467630 1873600 2625400 287080 0 2151900 6150 424 6060 26883;26884;26885;26886;26887 17734;17735 17734 2 RAPPVRVDEEK Unmodified 1294.6993 0.69934831 572 Q149N8-5;F8WEL0;Q149N8-2;Q149N8-4;Q149N8 SHPRH E3 ubiquitin-protein ligase SHPRH yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 45.444 40.317 3 0.013028 1 32811 20150910_Q1_SA_NiHu_Masterprac_group13_C 78.342 47.778 3281400 311790 646500 1570300 0 0 752820 6151 572 6061 26888;26889;26890;26891 17736 17736 1 RAPSSPVAKPGPVK Unmodified 1389.8092 0.80923311 1474 Q9GZR2;Q9GZR2-2 REXO4 RNA exonuclease 4 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 54.519 46.135 3 0.0034523 1 38464 20150910_Q1_SA_NiHu_Masterprac_group15_C 76.728 56.345 2980400 909430 0 255870 0 1204900 610130 6152 1474 6062 26892;26893;26894;26895 17737 17737 1 RAQEYDSSFPNWEFAR Unmodified 2001.8969 0.8969385 193 B7Z6Q6;Q99661;Q99661-2;Q5JR91;B7Z7M6;Q5JR89 KIF2C Kinesin-like protein KIF2C yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 134.57 126.29 3 1.9355E-16 3 86763 20150910_Q1_SA_NiHu_Masterprac_group13_B 95.554 63.854 222980000 0 52757000 109870000 39391000 18659000 2306100 6153 193 6063 26896;26897;26898;26899;26900 17738;17739;17740 17738 2 RAQGGDGVLDATGEEANSNAENPK Unmodified 2399.0949 0.094922616 665 H7C109;Q6P158 DHX57 Putative ATP-dependent RNA helicase DHX57 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 86.455 80.489 3 0.0052627 1 61943 20150910_Q1_SA_NiHu_Masterprac_group13_C 36.923 28.453 5329200 849980 2169500 654890 538600 0 1116300 6154 665 6064 26901;26902;26903;26904;26905 17741 17741 1 RAQGRGEVGAGAGPGAQAGPSAK Unmodified 2049.0464 0.046396701 177 E7EM45;C9J8M4;O94966-2;E7EST9;B5MEG5;E7EN22;E7ETS0;E9PEG8 USP19 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 19 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 46.156 40.842 4 0.0019385 1 33346 20150910_Q1_SA_NiHu_Masterprac_group13_C 50.232 34.71 3071800 0 525170 686670 503710 692310 663970 6155 177 6065 26906;26907;26908;26909;26910 17742 17742 1 RAQRPTATYCAVTDGIPAASEGK Unmodified 2419.1914 0.19140596 260 C9JM75;H7C454;H7C1H7;Q6P087-2;Q6P087 RPUSD3 RNA pseudouridylate synthase domain-containing protein 3 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 111.37 102.46 4 0.00024165 3 68793 20150910_Q1_SA_NiHu_Masterprac_group10_C 56.882 40.504 11079000 1226500 2474300 2427900 1226400 1076600 2647400 6156 260 6066 26911;26912;26913;26914;26915;26916 17743;17744;17745 17745 3 RARGPEEEEIGSPEPMAAPASASQK Unmodified 2594.2395 0.23947836 1115 Q14807;B7Z265;H3BRB3 KIF22 Kinesin-like protein KIF22 yes no 0 0 2 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 1 2 2 2 2 100.66 91.938 3;4 1.1265E-08 6 67143 20150910_Q1_SA_NiHu_Masterprac_group15_C 62.325 46.389 127610000 30060000 15673000 26680000 10001000 14608000 30588000 6157 1115 6067 26917;26918;26919;26920;26921;26922;26923;26924;26925;26926;26927 17746;17747;17748;17749;17750;17751 17748 6 RARPAEVGGMQLR Unmodified 1439.7779 0.77794976 609 H0Y477;H0YNJ9;P33316-2 DUT Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 72.85 67.686 3 0.035818 1 46921 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.023 27.611 12000000 0 2567500 2309200 1526600 0 5597000 6158 609 6068 26928;26929;26930;26931 17752 17752 1 RARQPLSEASNQQPLSGGEEK Unmodified 2281.1411 0.14108495 1533 Q9NQW6;Q9NQW6-2;C9JJT6 ANLN Actin-binding protein anillin yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 74.319 67.638 3;4 6.8972E-05 5 54355 20150910_Q1_SA_NiHu_Masterprac_group13_C 61.757 30.812 98371000 11097000 18295000 22420000 12974000 12618000 20967000 6159 1533 6069 26932;26933;26934;26935;26936;26937;26938;26939;26940;26941;26942 17753;17754;17755;17756;17757 17754 5 RASNLLYGQLK Unmodified 1261.7143 0.71427009 1287 Q8IXB1;Q8IXB1-2;F8W884 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 110.5 97.819 2 0.026759 1 65801 20150910_Q1_SA_NiHu_Masterprac_group10_C 72.289 36.515 1253600 1253600 0 0 0 0 0 6160 1287 6070 26943 17758 17758 1 RASQGLLSSIENSESDSSEAK Unmodified 2194.0349 0.034948121 1201 Q5UIP0-2;Q5UIP0 RIF1 Telomere-associated protein RIF1 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 128.1 121.01 3 3.9035E-15 6 78972 20150910_Q1_SA_NiHu_Masterprac_group10_B 91.337 60.473 17368000 8160100 2375800 0 0 0 6832200 6161 1201 6071 26944;26945;26946 17759;17760;17761;17762;17763;17764 17763 6 RATIQFHQPQRFK Unmodified 1655.9008 0.90084208 1275 Q8IUF8-4;Q8IUF8;Q8IUF8-2 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA yes no 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 84.829 77.449 4 0.0011913 6 58329 20150910_Q1_SA_NiHu_Masterprac_group15_C 78.705 78.705 16268000 0 483280 1651300 1943700 5345100 6844400 6162 1275 6072 26947;26948;26949;26950;26951 17765;17766;17767;17768;17769;17770 17769 6 RAVGPSSTQLYMVR Unmodified 1563.8191 0.81914587 359 Q7L576;E7EQ04;E7EVJ5;Q96F07-2;E7EVF4;F5H583;E7EW33 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 118.73 108.23 3 0.010896 1 74110 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.807 23.768 5576500 0 0 0 0 1601800 3974700 6163 359 6073 26952;26953 17771 17771 1 RAYDIAGSTKDVK Unmodified 1422.7467 0.74669243 655 P11388;H7BXX8;P11388-2;P11388-3;P11388-4;C9J5P2;H7BXH5 TOP2A DNA topoisomerase 2-alpha yes no 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 66.652 58.028 3 0.0332 2 46541 20150910_Q1_SA_NiHu_Masterprac_group15_C 54.898 21.625 7575000 0 985410 594730 0 1490200 4504800 6164 655 6074 26954;26955;26956;26957 17772;17773 17773 2 RAYDLAGSCRGVK Unmodified 1451.7303 0.73033086 1035 Q02880-2;Q02880;E9PCY5 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 0 0 2 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 64.458 56.437 3 0.0047708 3 39869 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.789 36.128 10379000 924740 3423200 3013100 1259700 1758100 0 6165 1035 6075 26958;26959;26960;26961;26962;26963 17774;17775;17776 17774 3 RAYETMAGAGVPFSANGRPLASGIR Oxidation (M) 2564.2918 0.29178871 754 O94776;Q68DB1 MTA2;DKFZp686F2281 Metastasis-associated protein MTA2 yes no 0 1 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 132.49 124.64 4 8.6096E-08 5 83283 20150910_Q1_SA_NiHu_Masterprac_group13_C 59.539 51.787 241360000 0 19203000 93873000 0 0 128280000 6166 754 6076 26964;26965;26966 17777;17778;17779;17780;17781 17777 76 5 RAYETMAGAGVPFSANGRPLASGIR Unmodified 2548.2969 0.29687408 754 O94776;Q68DB1 MTA2;DKFZp686F2281 Metastasis-associated protein MTA2 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 132.52 122.13 3;4 4.9624E-39 4 83325 20150910_Q1_SA_NiHu_Masterprac_group13_C 99.569 80.807 199560000 0 19820000 81918000 0 0 97818000 6167 754 6076 26967;26968;26969;26970 17782;17783;17784;17785 17782 4 RCATPVIIDEILPSK Unmodified 1710.9338 0.93384128 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 135.89 119.12 3 0.00033771 2 82606 20150910_Q1_SA_NiHu_Masterprac_group15_C 70.783 42.004 259770000 6968200 0 0 0 252800000 0 6168 1611 6077 26971;26972 17786;17787 17786 2 RCGKPPCEVDSPSFPCTHCGK Unmodified 2475.0552 0.055188528 1402 Q96KM6 ZNF512B Zinc finger protein 512B yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 88.91 80.355 4 0.021437 1 55328 20150910_Q1_SA_NiHu_Masterprac_group10_C 35.023 32.408 3537700 1990800 0 1115000 431900 0 0 6169 1402 6078 26973;26974;26975 17788 17788 1 RCLYASVLTAQPR Unmodified 1533.8086 0.80858118 833 P13639;B4DPU3 EEF2 Elongation factor 2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 122.19 119.51 3 0.038183 1 76751 20150910_Q1_SA_NiHu_Masterprac_group10_B 35.657 25.012 701940 0 552830 0 0 0 149100 6170 833 6079 26976;26977 17789 17789 1 RCSDNTEVEVSNLENKQPVESTSAK Unmodified 2820.3196 0.31957918 1533 Q9NQW6;Q9NQW6-2;C9JJT6 ANLN Actin-binding protein anillin yes no 0 0 2 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 104.57 97.374 3;4 6.6188E-21 2 64593 20150910_Q1_SA_NiHu_Masterprac_group10_B 85.11 77.083 11754000 1448100 10306000 0 0 0 0 6171 1533 6080 26978;26979 17790;17791 17790 2 RCTYLVLDEADR Unmodified 1509.7246 0.72457678 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 117.88 113.32 3 0.01944 1 77289 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.213 23.158 959790 0 0 0 0 0 959790 6172 1361;629 6081 26980 17792 17792 1 RDAALAVAEAMADK Unmodified 1430.7188 0.71876312 921 P46060;F8W7I9;H0Y4Q3 RANGAP1 Ran GTPase-activating protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.8 131.19 3 0.016896 1 84638 20150910_Q1_SA_NiHu_Masterprac_group10_B 40.798 27.069 7319600 0 7319600 0 0 0 0 6173 921 6082 26981 17793 17793 1 RDAEDAMDAMDGAVLDGR Unmodified 1906.8149 0.81492471 1026 Q8NAK9;Q01130;H0YG49 SRSF2;SFRS2 Serine/arginine-rich splicing factor 2 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 132.95 132.95 3 0.0008788 1 86000 20150910_Q1_SA_NiHu_Masterprac_group13_B 56.719 44.004 2673600 0 0 0 2673600 0 0 6174 1026 6083 26982 17794 17794 1 RDEEPESIEGKVK Unmodified 1514.7577 0.75765105 701 O15014 ZNF609 Zinc finger protein 609 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 61.01 57.976 3 0.0063781 1 40957 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.321 46.31 3799900 440850 1120400 0 419630 0 1819000 6175 701 6084 26983;26984;26985;26986 17795 17795 1 RDEFEFLEK Unmodified 1211.5823 0.58225287 1105 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 132.75 117.06 2 0.035017 1 78467 20150910_Q1_SA_NiHu_Masterprac_group10_C 89.171 21.965 35187000 35187000 0 0 0 0 0 6176 1105 6085 26987 17796 17796 1 RDFSAPTLEDHFNK Unmodified 1675.7954 0.79543354 967 P55081 MFAP1 Microfibrillar-associated protein 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 110.75 108.92 3 4.0784E-05 3 74927 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.689 90.689 3225600 0 925590 0 268510 0 2031500 6177 967 6086 26988;26989;26990 17797;17798;17799 17798 3 RDGRCATGILIHLAK Unmodified 1679.9253 0.92534227 280 C9K0Y1;Q96GN5-4;Q96GN5-2;Q96GN5 CDCA7L Cell division cycle-associated 7-like protein yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 127.44 109.45 4 0.0052412 1 78944 20150910_Q1_SA_NiHu_Masterprac_group13_C 51.939 37.899 1282000 0 0 1282000 0 0 0 6178 280 6087 26991 17800 17800 1 RDGSLHVTCTDQETGK Unmodified 1802.8217 0.82172464 1056 Q0VDF9 HSPA14 Heat shock 70 kDa protein 14 yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 2 51.475 45.27 3;4 1.3836E-11 6 32534 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.247 83.407 9867700 759920 987010 788580 730010 3487400 3114800 6179 1056 6088 26992;26993;26994;26995;26996;26997;26998;26999 17801;17802;17803;17804;17805;17806 17803 6 RDGWPAMCIHGDK Unmodified 1541.6868 0.68675149 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching 1 2 2 2 107.68 97.401 3 0.0033562 3 64903 20150910_Q1_SA_NiHu_Masterprac_group13_B 59.225 28.658 10457000 0 2301700 2422200 1539500 4194000 0 6180 1361;629 6089 27000;27001;27002;27003;27004;27005;27006 17807;17808;17809 17808 3 RDHANYEEDENGDITPIKAK Unmodified 2314.0826 0.082567016 1427 Q99547;H3BSB3;H3BNT4 MPHOSPH6 M-phase phosphoprotein 6 yes no 0 0 2 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 84.273 75.199 4 0.00021969 3 57239 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.044 48.261 14538000 1791600 2161100 4616100 0 2287800 3681600 6181 1427 6090 27007;27008;27009;27010;27011 17810;17811;17812 17811 3 RDILSFDK Unmodified 992.5291 0.52909508 1097 Q14151 SAFB2 Scaffold attachment factor B2 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 107.51 101.87 2 0.00012115 2 69324 20150910_Q1_SA_NiHu_Masterprac_group15_B 117.53 52.06 16761000 0 2325100 2943400 1900200 0 9592600 6182 1097 6091 27012;27013;27014;27015 17813;17814 17813 2 RDILSFDKIK Unmodified 1233.7081 0.70812208 1097 Q14151 SAFB2 Scaffold attachment factor B2 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 123.69 114.19 3 2.4264E-23 4 78750 20150910_Q1_SA_NiHu_Masterprac_group15_B 127.83 66.237 20101000 2070300 1214700 6555400 1656600 2961400 5642800 6183 1097 6092 27016;27017;27018;27019;27020;27021 17815;17816;17817;17818 17816 4 RDISEEVQLHRTLLAR Unmodified 1935.065 0.065006878 1282 Q8IWY8-2;Q8IWY8;Q8IWY8-4 ZSCAN29 Zinc finger and SCAN domain-containing protein 29 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 129.97 111.98 4 0.0017053 1 80636 20150910_Q1_SA_NiHu_Masterprac_group13_C 68.481 48.817 6575800 0 0 6575800 0 0 0 6184 1282 6093 27022 17819 17819 1 RDITVLDLGCGK Unmodified 1345.7024 0.70238478 709 O43148;O43148-2;B7Z8S9 RNMT mRNA cap guanine-N7 methyltransferase yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 128.55 125.76 3 0.0021225 2 85171 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.809 32.267 4805500 0 395790 0 0 0 4409700 6185 709 6094 27023;27024 17820;17821 17820 2 RDLMACAQTGSGK Oxidation (M) 1409.6391 0.63913259 693 O00571;O00571-2;B4DLU5;B4DXX7;O15523;C9J081;D6RCM4;E9PCD8;Q9NQI0-2;D6RDK4;Q9NQI0;H0Y960 DDX3X;DDX3Y;DDX4 ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX4 yes no 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 37.442 32.397 3 0.0032693 7 22444 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.498 71.719 13033000 1457400 1641600 2677900 1259900 1776900 4219600 6186 693 6095 27025;27026;27027;27028;27029;27030;27031;27032;27033;27034;27035;27036;27037 17822;17823;17824;17825;17826;17827;17828 17825 70 6 RDLMACAQTGSGK Unmodified 1393.6442 0.64421797 693 O00571;O00571-2;B4DLU5;B4DXX7;O15523;C9J081;D6RCM4;E9PCD8;Q9NQI0-2;D6RDK4;Q9NQI0;H0Y960 DDX3X;DDX3Y;DDX4 ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX4 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 3 1 2 2 2 2 61.467 54.336 2;3 0.0010278 4 44758 20150910_Q1_SA_NiHu_Masterprac_group13_C 83.856 65.046 196790000 31146000 3572000 41151000 26001000 44248000 50675000 6187 693 6095 27038;27039;27040;27041;27042;27043;27044;27045;27046;27047;27048;27049 17829;17830;17831;17832 17829 4 RDPTAEQFQEELEK Unmodified 1718.8111 0.81114318 888 P31944 CASP14 Caspase-14;Caspase-14 subunit p19;Caspase-14 subunit p10 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 123.11 113.29 3 1.6093E-08 5 73815 20150910_Q1_SA_NiHu_Masterprac_group10_B 99.927 81.095 13598000 1116600 3225400 7369000 0 0 1887000 6188 888 6096 27050;27051;27052;27053 17833;17834;17835;17836;17837 17836 4 RDQAEEEPNRIPSR Unmodified 1695.8289 0.82885893 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 54.779 48.748 3;4 0.00099168 7 40059 20150910_Q1_SA_NiHu_Masterprac_group13_C 71.513 52.607 26420000 2315300 5444300 5531100 4514400 3855900 4758900 6189 1109 6097 27054;27055;27056;27057;27058;27059;27060;27061;27062;27063 17838;17839;17840;17841;17842;17843;17844 17840 7 RDQPAFTPSGILTPHALGSR Unmodified 2120.1127 0.11268535 146 Q9H0D6-2;B4DZC3;Q9H0D6 XRN2 5'-3' exoribonuclease 2 yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 132.93 120.99 3 0.0014299 2 85920 20150910_Q1_SA_NiHu_Masterprac_group13_B 48.706 35.808 31566000 0 0 8258800 12988000 10319000 0 6190 146 6098 27064;27065;27066 17845;17846 17845 2 RDSFDNCSLGESSK Unmodified 1600.6787 0.6787488 1201 Q5UIP0-2;Q5UIP0 RIF1 Telomere-associated protein RIF1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 2 2 2 70.709 64.519 2;3 1.9805E-20 5 50457 20150910_Q1_SA_NiHu_Masterprac_group15_C 110.22 97.685 27002000 0 4479800 4295900 2583000 6088100 9555400 6191 1201 6099 27067;27068;27069;27070;27071;27072;27073;27074;27075 17847;17848;17849;17850;17851 17850 5 RDVVGNDVATILSR Unmodified 1513.8213 0.82125436 1663 Q9Y6W5 WASF2 Wiskott-Aldrich syndrome protein family member 2 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 133.27 128.31 3 0.014187 1 88389 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.191 13.287 18999000 0 0 0 0 0 18999000 6192 1663 6100 27076 17852 17852 1 REAEEVYRNSMPASSFQQQK Unmodified 2384.1179 0.11790666 186 B7Z500;Q9Y383-2;Q9Y383;B7Z4Q3 LUC7L2;C7orf55 Putative RNA-binding protein Luc7-like 2;UPF0562 protein C7orf55 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 98.353 93.373 4 8.7005E-11 3 63704 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.502 82.221 13886000 4087400 3597400 0 0 0 6201400 6193 186 6101 27077;27078;27079 17853;17854;17855 17854 3 REAFLEQFRK Unmodified 1322.7095 0.70951906 866 P23258 TUBG1 Tubulin gamma-1 chain yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 108.7 99.13 3 0.00029823 2 67371 20150910_Q1_SA_NiHu_Masterprac_group15_B 107.03 71.316 10279000 0 0 1853100 1118300 2898600 4408600 6194 866 6102 27080;27081;27082;27083 17856;17857 17856 2 REDPSFERYPK Unmodified 1422.6892 0.68917755 1554 Q9NWH9;H7C3F4;A8K5V8 SLTM SAFB-like transcription modulator yes no 0 0 2 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 69.464 62.187 3 0.0044873 5 48978 20150910_Q1_SA_NiHu_Masterprac_group15_C 91.701 56.401 17774000 1555300 2170600 2416400 1124200 5308400 5199300 6195 1554 6103 27084;27085;27086;27087;27088;27089 17858;17859;17860;17861;17862 17861 4 REEAEKLPEVSK Unmodified 1413.7464 0.74635808 27 F5H101;Q76FK4-2;Q76FK4-4;A6NJK7;Q76FK4;Q76FK4-3 NOL8 Nucleolar protein 8 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 65.916 57.443 3 0.015937 1 46016 20150910_Q1_SA_NiHu_Masterprac_group15_C 64.313 28.313 9132600 0 1432400 1387400 0 2632400 3680400 6196 27 6104 27090;27091;27092;27093 17863 17863 1 REEEEQQEGGFASPR Unmodified 1747.7762 0.77615466 175 B5ME40;F5GXG0;Q96T88 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 63.31 56.434 3 2.9096E-87 4 45459 20150910_Q1_SA_NiHu_Masterprac_group15_C 140.96 123 34321000 3503200 5356900 6088800 1608000 4152400 13612000 6197 175 6105 27094;27095;27096;27097;27098;27099 17864;17865;17866;17867 17865 4 REEEEQQEGGFASPRTGK Unmodified 2033.9403 0.94025987 175 B5ME40;F5GXG0;Q96T88 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 60.621 50.245 3 0.0054193 1 41298 20150910_Q1_SA_NiHu_Masterprac_group13_C 65.808 35.069 948050 299070 0 648980 0 0 0 6198 175 6106 27100;27101 17868 17868 1 REGAGDAEADPLEPPPPQQQLGLSLRR Unmodified 2896.4791 0.47913178 1447 Q9BTC0;Q9BTC0-1;Q9BTC0-2;Q9BTC0-3 DIDO1 Death-inducer obliterator 1 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 132.44 122.03 4 1.3199E-18 5 78715 20150910_Q1_SA_NiHu_Masterprac_group10_C 83.221 68.773 165370000 24840000 10887000 25701000 93844000 10100000 0 6199 1447 6107 27102;27103;27104;27105;27106 17869;17870;17871;17872;17873 17873 5 REGLGLDVERVNK Unmodified 1483.8107 0.81068967 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 95.664 87.735 3 5.5279E-46 5 59368 20150910_Q1_SA_NiHu_Masterprac_group10_B 126.56 87.604 43456000 4720100 4966000 4643500 6353500 12190000 10582000 6200 578 6108 27107;27108;27109;27110;27111;27112 17874;17875;17876;17877;17878 17877 5 REHALTSGTIK Unmodified 1211.6622 0.66223452 340 E5RHG8;E5RJ89;Q15369;E5RGD9 TCEB1 Transcription elongation factor B polypeptide 1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 39.743 35.331 3 0.00022571 2 24641 20150910_Q1_SA_NiHu_Masterprac_group10_B 96.604 71.766 3134600 0 1785500 1152300 0 0 196700 6201 340 6109 27113;27114;27115 17879;17880 17880 2 REHPADFVAQK Unmodified 1296.6575 0.65748349 1494 Q9H609 ZNF576 Zinc finger protein 576 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 52.532 47.886 3 0.0034234 1 39231 20150910_Q1_SA_NiHu_Masterprac_group13_C 69.815 48.464 1501600 0 0 696300 236550 0 568770 6202 1494 6110 27116;27117;27118 17881 17881 1 REILSDRHAFETAR Unmodified 1699.8754 0.87541519 1414 Q96QC0 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 80.563 74.797 4 0.016271 2 51646 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.992 30.448 4103600 0 0 0 752470 2051500 1299600 6203 1414 6111 27119;27120;27121 17882;17883 17882 2 RELEVDSQCVR Unmodified 1389.6671 0.6670619 1209 Q5VWQ0 RSBN1 Round spermatid basic protein 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 72.451 65.233 3 0.010951 1 45479 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.04 37.906 4225300 0 858740 750800 303290 827310 1485100 6204 1209 6112 27122;27123;27124;27125;27126 17884 17884 1 RELHGQNPVVTPCNK Unmodified 1747.8788 0.87878601 573 Q16630-3;F8WJN3;Q16630;Q16630-2 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 57.992 52.861 3 0.0040948 1 37651 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.149 29.066 1693500 0 0 0 299290 663300 730870 6205 573 6113 27127;27128;27129 17885 17885 1 RELHPPATSHEAPGTK Unmodified 1726.8751 0.87508084 424 E9PE58;Q15345-3;Q15345 LRRC41 Leucine-rich repeat-containing protein 41 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 49.62 42.676 4 0.0018799 1 30402 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.454 41.916 8066900 0 1798000 2232900 0 1770000 2266000 6206 424 6114 27130;27131;27132;27133 17886 17886 1 RELKEDSLWSAK Unmodified 1460.7623 0.7623425 736 O60934 NBN Nibrin yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 94.463 86.903 3 0.011075 2 59448 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.345 41.663 10704000 0 1681500 2108700 953070 2106800 3854000 6207 736 6115 27134;27135;27136;27137;27138 17887;17888 17888 2 RENFCNIHVSLVPQPSSTGEQK Unmodified 2526.2285 0.22851975 852 P17812;B7Z9C4 CTPS1 CTP synthase 1 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 131.28 125.16 4 4.4531E-06 2 83913 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.862 48.576 45612000 0 38246000 0 3435100 3931500 0 6208 852 6116 27139;27140;27141 17889;17890 17890 2 REPFLLSGGDDGALK Unmodified 1573.81 0.81002097 1438 Q9BQ67 GRWD1 Glutamate-rich WD repeat-containing protein 1 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 132.71 119.11 3 9.4232E-06 2 87669 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.259 67.08 34970000 0 0 3246600 0 6207600 25516000 6209 1438 6117 27142;27143;27144 17891;17892 17891 2 REPGYTPPGAGNQNPPGMYPVTGPK Unmodified 2581.2384 0.23835615 1367 Q93052;C9JUT4;C9JXK9 LPP Lipoma-preferred partner yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 128.77 119.17 3 0.0018259 4 76710 20150910_Q1_SA_NiHu_Masterprac_group10_C 40.625 29.466 16339000 10030000 0 0 898240 1597500 3813700 6210 1367 6118 27145;27146;27147;27148 17893;17894;17895;17896 17896 4 REQGNIEEAVR Unmodified 1299.6531 0.6531264 705 O15294;O15294-2;O15294-3 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 53.832 52.777 3 0.006772 1 37638 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.235 35.893 695490 0 0 0 0 0 695490 6211 705 6119 27149 17897 17897 1 RESQSVEEALK Unmodified 1274.6466 0.64664404 129 F8W720;B4DUT7;P49915 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 63.509 56.649 3 0.0014546 6 46034 20150910_Q1_SA_NiHu_Masterprac_group13_C 85.672 33.694 6226100 612630 1017700 976340 513480 1149900 1956000 6212 129 6120 27150;27151;27152;27153;27154;27155 17898;17899;17900;17901;17902;17903 17899 6 RESQSVEEALKK Unmodified 1402.7416 0.74160705 129 F8W720;B4DUT7;P49915 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 2 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 58.62 48.844 3 0.0058494 3 40120 20150910_Q1_SA_NiHu_Masterprac_group15_C 84.734 32.238 38566000 0 10589000 14041000 0 13937000 0 6213 129 6121 27156;27157;27158 17904;17905;17906 17905 3 RESVCNKADAESEPVAQK Unmodified 2016.9535 0.9534671 769 O95243-2 MBD4 Methyl-CpG-binding domain protein 4 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 2 2 2 2 48.828 43.078 3;4 2.6958E-21 13 31689 20150910_Q1_SA_NiHu_Masterprac_group10_B 102.36 87.182 40357000 8338900 5321800 7728000 11644000 4552800 2772100 6214 769 6122 27159;27160;27161;27162;27163;27164;27165;27166;27167;27168;27169;27170;27171 17907;17908;17909;17910;17911;17912;17913;17914;17915;17916;17917;17918;17919 17915 13 RETGNYTCEFCGK Unmodified 1620.6661 0.66607562 1195 Q5T7W0-2;B1ALC2;B5MDS3 ZNF618 Zinc finger protein 618 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 78.84 71.206 3 1.5217E-05 4 49454 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.464 80.645 7821000 1543700 1060700 906510 1023600 1280600 2005800 6215 1195 6123 27172;27173;27174;27175;27176;27177;27178 17920;17921;17922;17923 17921 3 RETGNYTCEFCGKQYK Unmodified 2039.8829 0.88294469 1195 Q5T7W0-2;B1ALC2;B5MDS3 ZNF618 Zinc finger protein 618 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 83.969 75.13 3 0.0016335 5 52442 20150910_Q1_SA_NiHu_Masterprac_group10_C 72.428 65.229 3850800 1279800 0 1027000 0 0 1544100 6216 1195 6124 27179;27180;27181 17924;17925;17926;17927;17928 17927 5 REVDDLGPEVGDIK Unmodified 1540.7733 0.77330111 524 F5H6K0;O43143 DHX15 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 118.21 110.33 3 0.00057272 5 75370 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.722 43.546 17852000 1569800 4284200 3017100 756560 0 8224800 6217 524 6125 27182;27183;27184;27185;27186 17929;17930;17931;17932;17933 17930 4 REVVVYAPLSK Unmodified 1259.7238 0.72377215 1540 Q9NRZ9-6;Q9NRZ9-5;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9 HELLS Lymphoid-specific helicase yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 108.57 101.02 3 0.029798 1 68849 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.761 31.493 4284400 0 1263400 1061100 0 0 1959800 6218 1540 6126 27187;27188;27189 17934 17934 1 RFANFSGGK Unmodified 982.49846 0.49846366 1576 Q9P275;Q9P275-2;E9PEW0;F5H3B9 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 62.494 53.996 2 0.034145 1 38761 20150910_Q1_SA_NiHu_Masterprac_group10_B 89.886 62.582 6351500 0 2874400 3477100 0 0 0 6219 1576 6127 27190;27191 17935 17935 1 RFCNTTCLGAYKK Unmodified 1617.7756 0.77556649 1102 Q14202-2;Q14202-3;A6NL54;A6NHN7;Q14202;A6NHB5 ZMYM3 Zinc finger MYM-type protein 3 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 74.218 69.029 3 0.023113 2 47931 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.268 45.926 11383000 0 1951400 1832200 1451300 0 6148600 6220 1102 6128 27192;27193;27194;27195 17936;17937 17937 2 RFDDAVVQSDMK Unmodified 1409.6609 0.66091389 824 P11142;E9PKE3;P11142-2;E9PNE6;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 2 1 2 1 1 97.815 91.086 2;3 0.0061479 3 62221 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.425 33.911 22281000 2810900 4325400 1818600 2161600 2973900 8191100 6221 824 6129 27196;27197;27198;27199;27200;27201;27202;27203;27204 17938;17939;17940 17938 3 RFDFEQVTVK Unmodified 1267.6561 0.65608651 1346 Q8WYQ5-3;Q8WYQ5 DGCR8 Microprocessor complex subunit DGCR8 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 129.85 124.89 2 0.024972 1 84614 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.184 43.414 3448400 0 0 0 0 0 3448400 6222 1346 6130 27205 17941 17941 1 RFDRAEAEYIAAK Unmodified 1538.7841 0.78414057 1194 Q5T7V8-3;Q5T7V8-4;Q5T7V8 GORAB RAB6-interacting golgin yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 91.627 84.574 3 0.0041121 1 57967 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.165 43.232 2450300 0 306190 1020800 0 0 1123300 6223 1194 6131 27206;27207;27208 17942 17942 1 RFGQNHNLLK Unmodified 1225.668 0.6679886 1586 Q9UEG4 ZNF629 Zinc finger protein 629 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 63.46 56.721 3 0.0048567 4 46448 20150910_Q1_SA_NiHu_Masterprac_group13_C 76.064 53.037 10040000 0 1057500 3394500 1239200 1735600 2612700 6224 1586 6132 27209;27210;27211;27212;27213 17943;17944;17945;17946 17944 4 RFGQSSVLAIHAR Unmodified 1440.795 0.79498003 646 H3BS42;Q9H5H4;B7Z2Y7 ZNF768 Zinc finger protein 768 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 1 1 1 101.65 93.506 3 0.00068297 5 69995 20150910_Q1_SA_NiHu_Masterprac_group13_C 89.663 68.93 16827000 3361300 2837000 2776000 742480 1399100 5711000 6225 646 6133 27214;27215;27216;27217;27218;27219;27220 17947;17948;17949;17950;17951 17947 5 RFGVPVIADGGIQNVGHIAK Unmodified 2047.1327 0.13269251 610 H0Y4R1;P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 133.31 125.47 3 4.1851E-52 2 79284 20150910_Q1_SA_NiHu_Masterprac_group10_C 116.13 86.553 36074000 23943000 0 0 12131000 0 0 6226 610 6134 27221;27222 17952;17953 17953 2 RFHWTAYLR Unmodified 1248.6516 0.65161026 628 Q6JHV3;H0YMI4;Q9Y6I4;B3KMX7;H0YLB7;H0YKU8;F5H1A6;B4DWJ6 USP3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.62 125.66 3 0.011271 1 85444 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.847 43.505 8142200 0 0 0 0 0 8142200 6227 628 6135 27223 17954 17954 1 RFIPLAELK Unmodified 1085.6597 0.65971533 1570 Q9P016 THYN1 Thymocyte nuclear protein 1 yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 132.74 118.61 2 3.5106E-06 3 87490 20150910_Q1_SA_NiHu_Masterprac_group15_B 117.02 72.042 55565000 15617000 0 18539000 0 3463200 17947000 6228 1570 6136 27224;27225;27226;27227 17955;17956;17957 17955 3 RFLINTIK Unmodified 1003.6179 0.61785051 1637 Q9Y2S0-2 POLR1D DNA-directed RNA polymerases I and III subunit RPAC2 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 120.38 107.42 2 0.031718 1 73396 20150910_Q1_SA_NiHu_Masterprac_group15_B 106.68 22.115 23833000 0 0 4693000 0 3728500 15411000 6229 1637 6137 27228;27229;27230 17958 17958 1 RFSCIIGPNGSGK Unmodified 1391.698 0.6979681 419 E9PD53;Q9NTJ3;Q9NTJ3-2;E7ET04;C9JR83;C9J9E4;C9JWF0;C9IYK2;C9JJ64 SMC4 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 4 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 95.855 86.605 3 0.037857 1 59385 20150910_Q1_SA_NiHu_Masterprac_group15_B 35.763 18.596 5958000 0 0 0 0 1550600 4407400 6230 419 6138 27231;27232 17959 17959 1 RFSHSGSYSSHISSK Unmodified 1665.7859 0.78593148 415 F5H4I8;E9PCM7;F5H2R1;P37275;Q2KJ05;F5H8J0;F5H838;Q5VZ84;G3V1R3;F5H1R1;H0YMN2;H0YND9;H0YME0;H0YKM9;H0YMD3;H0YK86;F5H601;E7ESP8;E7EUW9;F5H814;O60315 ZEB1;ZEB2 Zinc finger E-box-binding homeobox 1;Zinc finger E-box-binding homeobox 2 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 44.101 38.31 4 0.0014421 3 31340 20150910_Q1_SA_NiHu_Masterprac_group13_C 63.212 49.173 5041200 0 0 1694900 1320600 680330 1345300 6231 415 6139 27233;27234;27235;27236 17960;17961;17962 17961 3 RFSQTSNFTQHQR Unmodified 1635.7866 0.78660019 353 E7ENV5;O75123 ZNF623 Zinc finger protein 623 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 56.993 50.695 3 0.00022327 7 36187 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.478 73.049 7870800 0 1524500 1393300 661670 1517700 2773700 6232 353 6140 27237;27238;27239;27240;27241 17963;17964;17965;17966;17967;17968;17969 17967 7 RFTIHRTSNVLTLSLK Unmodified 1885.0898 0.089765066 1576 Q9P275;Q9P275-2;E9PEW0;F5H3B9 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 131.19 131.19 4 0.011829 1 84201 20150910_Q1_SA_NiHu_Masterprac_group13_B 43.557 26.132 6730500 0 0 0 6730500 0 0 6233 1576 6141 27242 17970 17970 1 RFTRSDELQR Unmodified 1306.6742 0.67419619 804 P08047;G5E9M8 SP1 Transcription factor Sp1 no no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 47.512 42.077 3 4.0718E-34 2 29487 20150910_Q1_SA_NiHu_Masterprac_group13_B 132.01 74.225 69098000 0 14987000 20658000 8752500 8647700 16053000 6234 804 6142 27243;27244;27245;27246;27247 17971;17972 17971 2 RFTSLKEHIK Unmodified 1257.7194 0.71935547 415 F5H4I8;E9PCM7;F5H2R1;P37275;Q2KJ05;F5H8J0;F5H838;Q5VZ84;F5H1R1;H0YMN2;H0YND9;F6TDF5 ZEB1 Zinc finger E-box-binding homeobox 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 60.386 52.79 3 1.7413E-14 1 37613 20150910_Q1_SA_NiHu_Masterprac_group15_B 119.34 70.275 2633300 0 0 0 0 1368300 1265000 6235 415 6143 27248;27249 17973 17973 1 RFVNDTLRSEFHK Unmodified 1647.8481 0.84813781 1569 Q9P013 CWC15 Spliceosome-associated protein CWC15 homolog yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 100.46 91.358 4 0.0012512 4 66790 20150910_Q1_SA_NiHu_Masterprac_group15_C 75.739 49.916 22188000 0 0 6279100 3766300 3884700 8257800 6236 1569 6144 27250;27251;27252;27253 17974;17975;17976;17977 17977 4 RGAAGDWGERANQVLK Unmodified 1726.8863 0.88631423 1120 Q14978;Q14978-3;Q14978-2 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 106.27 97.706 3;4 0.0017424 10 64887 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.709 42.823 160180000 36854000 22205000 10363000 11263000 55175000 24318000 6237 1120 6145 27254;27255;27256;27257;27258;27259;27260;27261;27262;27263;27264;27265 17978;17979;17980;17981;17982;17983;17984;17985;17986;17987 17985 9 RGAFSSVSMSGGAGR Unmodified 1425.6783 0.67829529 300 F8VS64;P19013;CON__P19013;F5H8K9;F8VX05;F8VZR6 KRT4 Keratin, type II cytoskeletal 4 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 85.659 76.911 3 0.0014162 2 58125 20150910_Q1_SA_NiHu_Masterprac_group15_C 65.467 23.225 14209000 0 0 0 0 6250200 7959200 + 6238 300 6146 27266;27267 17988;17989 17989 2 RGAFSSVSMSGGAGR Oxidation (M) 1441.6732 0.67320991 300 F8VS64;P19013;CON__P19013;F5H8K9;F8VX05;F8VZR6 KRT4 Keratin, type II cytoskeletal 4 yes no 0 1 1 By matching By matching By matching By matching By MS/MS By matching 1 65.477 51.54 3 0.012417 1 42211 20150910_Q1_SA_NiHu_Masterprac_group15_C 51.073 9.3299 970670 0 0 0 0 970670 0 + 6239 300 6146 27268 17990 17990 28 1 RGAGNGVVPAGVILER Unmodified 1563.8845 0.88452332 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 131.06 120.88 3 0.0014075 4 85797 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.912 34.246 91781000 0 0 39037000 9791500 5346600 37606000 6240 1109 6147 27269;27270;27271;27272 17991;17992;17993;17994 17993 4 RGAPAAATAPAPTAHKAK Unmodified 1685.9325 0.93253614 1350 Q92522 H1FX Histone H1x yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 36.254 31.139 4 0.0017805 1 26627 20150910_Q1_SA_NiHu_Masterprac_group15_C 53.255 37.868 544410 0 0 0 133000 411410 0 6241 1350 6148 27273;27274 17995 17995 1 RGAPDPRVDDDSLGEFPVTNSR Unmodified 2399.1466 0.14656426 1359 Q92785;B4DT58 DPF2 Zinc finger protein ubi-d4 yes no 0 0 2 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 129.97 123.77 4 0.0042016 2 81937 20150910_Q1_SA_NiHu_Masterprac_group13_C 45.363 29.051 26167000 0 13364000 10159000 2643800 0 0 6242 1359 6149 27275;27276;27277 17996;17997 17997 2 RGAPPSSNIEDFHGLLPK Unmodified 1934.001 0.0010096381 52 P43243;A8MXP9;D6REM6;D6R991;H0Y8T4 MATR3 Matrin-3 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 2 1 1 132.3 126.31 3;4 2.7588E-06 6 84967 20150910_Q1_SA_NiHu_Masterprac_group10_B 88.951 66.602 65175000 0 29318000 6677300 11444000 4947100 12789000 6243 52 6150 27278;27279;27280;27281;27282;27283;27284 17998;17999;18000;18001;18002;18003 18003 5 RGDQLLSVNGVSVEGEHHEK Unmodified 2189.0825 0.082507436 575 G3V1D4;Q9NUP9;O14910 LIN7C;LIN7A Protein lin-7 homolog C;Protein lin-7 homolog A yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 106.37 97.618 4 0.00010221 3 72048 20150910_Q1_SA_NiHu_Masterprac_group13_C 73.984 58.821 15991000 2433400 1961500 3652500 1341800 1682900 4918600 6244 575 6151 27285;27286;27287;27288;27289;27290 18004;18005;18006 18004 2 RGFAFVTFDDHDSVDK Unmodified 1854.8537 0.8536767 537 H0YH80;P09651-3;F8VXY0;F8VRQ1;P09651-2;F8W6I7;P09651;F8VSB5;F8W1S7;F8VTQ5;F8VZ49;Q32P51 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 133.01 130.53 3 0.00015045 2 85893 20150910_Q1_SA_NiHu_Masterprac_group13_B 83.823 68.984 51919000 0 0 0 6337600 0 45582000 6245 537 6152 27291;27292 18007;18008 18007 2 RGFAFVTFDDHDTVDK Unmodified 1868.8693 0.86932676 371;955 E7EWI9;E7ERJ4;P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 133.09 115.17 3 6.7962E-197 2 84161 20150910_Q1_SA_NiHu_Masterprac_group13_C 169.15 130.89 231640000 0 0 180750000 0 50882000 0 6246 371;955 6153 27293;27294;27295 18009;18010 18009 1 RGFAFVTFDDHDTVDKIVVQK Unmodified 2436.2438 0.2437591 371;955 E7EWI9;E7ERJ4;P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 133.58 133.58 4 2.7517E-134 1 86671 20150910_Q1_SA_NiHu_Masterprac_group13_B 142.23 51.478 162490000 0 0 0 162490000 0 0 6247 371;955 6154 27296 18011 18011 1 RGFGFVTFDDHDPVDK Unmodified 1850.8588 0.85876208 863 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 133.16 127.01 3 1.3663E-65 2 86110 20150910_Q1_SA_NiHu_Masterprac_group13_B 135.57 105.63 60534000 0 7874900 0 29752000 22907000 0 6248 863 6155 27297;27298;27299 18012;18013 18012 1 RGFGFVYFQNHDAADK Unmodified 1870.8751 0.87508084 1074 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 133.01 121.83 3;4 7.0841E-32 2 78539 20150910_Q1_SA_NiHu_Masterprac_group10_C 116.86 94.471 169180000 158940000 0 0 8891900 1355000 0 6249 1074 6156 27300;27301;27302 18014;18015 18015 1 RGGNRFEPYANPTK Unmodified 1605.8012 0.80118762 956 P52272-2;P52272 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 0 0 2 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 71.004 62.097 4 0.0046896 2 49563 20150910_Q1_SA_NiHu_Masterprac_group15_C 56.295 36.171 3430100 1305200 907780 0 0 1217100 0 6250 956 6157 27303;27304;27305 18016;18017 18016 2 RGGTMETDDHMGGIPARNSK Unmodified 2128.9742 0.97421932 32 Q99755-2;Q99755-3;A6PW57;Q99755;B4DY52;A2A3N6 PIP5K1A;PIPSL Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha;Putative PIP5K1A and PSMD4-like protein yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 66.887 61.356 4 0.018795 1 42993 20150910_Q1_SA_NiHu_Masterprac_group15_B 36.657 25.858 2273000 0 0 0 235300 712180 1325500 6251 32 6158 27306;27307;27308 18018 18018 1 RGHVLGNGSQVTQAANSGCSK Unmodified 2127.0239 0.0239467 1265 Q86V48-2;Q86V48-3;Q86V48 LUZP1 Leucine zipper protein 1 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 59.311 53.887 3;4 6.0097E-06 6 38223 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.606 45.869 12500000 0 4325200 0 1665100 5762300 747820 6252 1265 6159 27309;27310;27311;27312;27313;27314 18019;18020;18021;18022;18023;18024 18021 6 RGISSSNEGVEEPSK Unmodified 1574.7536 0.7536283 1560 Q9NXV6 CDKN2AIP CDKN2A-interacting protein yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 1 1 1 1 1 53.91 47.665 3 0.00040602 4 33922 20150910_Q1_SA_NiHu_Masterprac_group13_B 76.341 43.149 13219000 2181400 1516700 2163700 1690000 3252700 2414800 6253 1560 6160 27315;27316;27317;27318;27319;27320;27321 18025;18026;18027;18028 18025 4 RGISSSNEGVEEPSKK Unmodified 1702.8486 0.84859132 1560 Q9NXV6 CDKN2AIP CDKN2A-interacting protein yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 44.179 38.872 3 0.00015255 5 26771 20150910_Q1_SA_NiHu_Masterprac_group13_B 88.319 58.852 67345000 9079300 8614500 11424000 11534000 12744000 13950000 6254 1560 6161 27322;27323;27324;27325;27326;27327 18029;18030;18031;18032;18033 18029 5 RGLNSQSSDDHLNK Unmodified 1569.7495 0.74954598 34 Q96HA1-2;A8CG34-2;Q96HA1-3;A8MXF9;A8CG34;Q96HA1 POM121;POM121C Nuclear envelope pore membrane protein POM 121;Nuclear envelope pore membrane protein POM 121C yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 37.134 31.518 3 0.0023679 2 21581 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.414 43.828 4954700 0 1240700 3004600 0 221830 487630 6255 34 6162 27328;27329;27330;27331 18034;18035 18035 2 RGLVGIEFKEK Unmodified 1274.7347 0.73467118 840 P15924;P15924-2 DSP Desmoplakin yes no 0 0 2 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 105.71 98.728 3 0.024715 2 65661 20150910_Q1_SA_NiHu_Masterprac_group13_B 67.879 51.31 4891300 0 0 1870900 1106600 0 1913800 6256 840 6163 27332;27333;27334 18036;18037 18036 2 RGPNYTSGYGTNSELSNPSETESERK Unmodified 2859.2907 0.29072189 140 P51114-3;B4DXZ6;P51114;E7EU85;E9PFF5;P51114-2 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 96.581 87.086 4 0.001999 2 59650 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.656 46.656 8111500 1444200 1531000 1910400 0 1034100 2191800 6257 140 6164 27335;27336;27337;27338;27339 18038;18039 18039 2 RGPPSDGHEALEK Unmodified 1391.6793 0.67934115 477 H0Y5J9;F2Z2W0;Q9H2D6-5;F8W6V6;Q9H2D6-3;Q9H2D6-2;Q9H2D6 TRIOBP TRIO and F-actin-binding protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 40.436 35.522 3 0.010589 1 25074 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.277 20.045 1446400 277360 199090 0 0 429680 540310 6258 477 6165 27340;27341;27342;27343 18040 18040 1 RGPQLVCTGSDDGTVK Unmodified 1688.8152 0.8151827 117 Q96DI7;B4DQJ1 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 74.771 73.516 3 0.0014279 2 50985 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.755 36.227 1720000 0 0 0 0 0 1720000 6259 117 6166 27344 18041;18042 18042 2 RGPSEETGGAVFDHPAK Unmodified 1753.8384 0.83836099 732 O60563 CCNT1 Cyclin-T1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 72.914 65.409 3 1.8373E-58 7 45859 20150910_Q1_SA_NiHu_Masterprac_group10_B 122.29 110.92 36689000 8079200 6472600 7966600 3703700 4075400 6391400 6260 732 6167 27345;27346;27347;27348;27349;27350;27351 18043;18044;18045;18046;18047;18048;18049 18047 7 RGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSK Unmodified 4337.1116 0.11164608 838 P14866;A6NIT8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 2 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 133.01 121.06 5 3.9269E-07 2 84006 20150910_Q1_SA_NiHu_Masterprac_group13_C 34.503 29.667 53994000 0 0 21965000 23079000 8949900 0 6261 838 6168 27352;27353;27354 18050;18051 18051 2 RGSLPAEASCTT Unmodified 1248.5768 0.57684991 1297 Q8N3V7-2 SYNPO Synaptopodin yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 65.342 58.265 2 0.0027226 3 41065 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.122 70.744 15656000 1930500 1714100 3445100 969780 1874800 5721700 6262 1297 6169 27355;27356;27357;27358;27359;27360 18052;18053;18054 18052 2 RGSLPDTQPSQGPSTPK Unmodified 1751.8802 0.8802258 675 H9KV46;Q86Y91;Q86Y91-2;Q86Y91-3;Q86Y91-4 KIF18B Kinesin-like protein KIF18B yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 1 1 72.05 64.588 3 0.00034095 4 44939 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.433 56.193 17450000 2655500 2778200 1379900 857410 3030700 6748400 6263 675 6170 27361;27362;27363;27364;27365;27366;27367 18055;18056;18057;18058 18056 4 RGSPAPANPGRAPVASK Unmodified 1631.8856 0.88558595 448 G3XAA9;E9PJN1;O75676-2;O75676 RPS6KA4 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-4 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 48.67 43.129 3 0.0051449 1 30782 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.461 43.83 1728500 295330 308000 0 0 255900 869300 6264 448 6171 27368;27369;27370;27371 18059 18059 1 RGSYRGGSISVQVNSIK Unmodified 1806.97 0.97004386 1120 Q14978;Q14978-3;Q14978-2 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 107.18 90.341 4 0.0035595 1 66374 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.223 32.021 6117800 0 0 0 0 6117800 0 6265 1120 6172 27372 18060 18060 1 RGVITDQNSDGYCQTGTMSR Unmodified 2244.9852 0.98517793 840 P15924;P15924-2 DSP Desmoplakin yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 88.288 81.269 3 0.00072893 2 55770 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.451 45.657 2289600 0 486130 658150 0 0 1145300 6266 840 6173 27373;27374;27375 18061;18062 18061 2 RGYQLEPDLSEEVSAR Unmodified 1847.9014 0.90135517 115 B4DQ42;Q9HC62;E7ENF4;H7C1A0 SENP2 Sentrin-specific protease 2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 131.19 128.4 3 0.0015302 2 86407 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.964 38.791 14634000 0 5645800 0 0 0 8988600 6267 115 6174 27376;27377 18063;18064 18063 1 RHATAEEVEEEER Unmodified 1583.7176 0.71757715 1337 Q8TDN6 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 43.765 38.525 3 7.1367E-06 6 27722 20150910_Q1_SA_NiHu_Masterprac_group10_C 98.943 88.871 11551000 1397900 1490600 1528100 1039600 3141900 2952900 6268 1337 6175 27378;27379;27380;27381;27382;27383 18065;18066;18067;18068;18069;18070 18070 6 RHDSDTFPELK Unmodified 1343.647 0.64697839 426 E9PFZ0;P38398-4;P38398-2;P38398;E9PFC7;E7EP70;F8W8H7;E7EMP0 BRCA1 Breast cancer type 1 susceptibility protein yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 2 1 86.902 78.061 3 0.0021408 3 53727 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.548 51.399 13299000 0 1916700 2587600 1075700 4104000 3614500 6269 426 6176 27384;27385;27386;27387;27388;27389 18071;18072;18073 18071 3 RHDVCPAPSSSASHGPF Unmodified 1807.806 0.806015 664 H7C0N4 SF1 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 4 2 1 2 3 2 81.906 74.293 3;4 0.00079001 10 51408 20150910_Q1_SA_NiHu_Masterprac_group13_B 80.102 73.121 59007000 11173000 8664400 4704300 4817300 10209000 19439000 6270 664 6177 27390;27391;27392;27393;27394;27395;27396;27397;27398;27399;27400;27401;27402;27403 18074;18075;18076;18077;18078;18079;18080;18081;18082;18083 18074 10 RHEVERAPEAAAAER Unmodified 1690.8499 0.84992873 1447 Q9BTC0 DIDO1 Death-inducer obliterator 1 yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 43.163 37.448 4 0.0024797 2 26042 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.219 37.639 3648300 0 0 777010 396540 743750 1731000 6271 1447 6178 27404;27405;27406;27407 18084;18085 18084 2 RHIPEAHQATLLDGK Unmodified 1684.9009 0.90090166 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 72.234 70.152 4 0.0017641 2 48140 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.288 35.402 2374800 0 875460 0 0 0 1499300 6272 1325 6179 27408;27409 18086;18087 18086 1 RHMDGMYGPPAK Unmodified 1358.6224 0.62236032 1326 Q8NFD5;Q8NFD5-2;Q8NFD5-3;G3XAA0;H0Y7H8;Q8NFD5-4 ARID1B AT-rich interactive domain-containing protein 1B yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 60.198 52.602 3 0.015662 1 37597 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.429 36.21 1182600 0 0 0 0 452580 729990 6273 1326 6180 27410;27411 18088 18088 1 RHPEYAVSVLLR Unmodified 1438.8045 0.80448208 294 CON__P02769 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 129.27 119.09 3 1.8479E-18 5 80298 20150910_Q1_SA_NiHu_Masterprac_group15_C 115.34 80.444 59198000 0 0 13756000 3246800 5201000 36994000 + 6274 294 6181 27412;27413;27414;27415 18089;18090;18091;18092;18093 18093 5 RHSNVVILTTSNITEK Unmodified 1810.9901 0.9901106 1142 Q15645 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 103.31 100.15 3 0.018519 1 68298 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.949 39.528 0 0 0 0 0 0 0 6275 1142 6182 27416 18094 18094 1 RHTGEKPYVCDTCGK Unmodified 1806.8141 0.81413685 1524 Q9NPC7-3;Q9NPC7-2;Q9NPC7 MYNN Myoneurin yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 38.978 29.604 4 0.0039108 1 23998 20150910_Q1_SA_NiHu_Masterprac_group13_C 54.402 33.745 623480 0 0 623480 0 0 0 6276 1524 6183 27417 18095 18095 1 RHTQAGEGTSLETKTPR Unmodified 1867.95 0.9500367 1249 Q7Z2Z1-2;Q7Z2Z1 TICRR Treslin yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 39.481 38.627 4 0.010235 1 27288 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.226 15.198 1016200 0 0 0 0 0 1016200 6277 1249 6184 27418 18096 18096 1 RHVCIQSSLAK Unmodified 1297.6925 0.69248879 1302 Q8N5C6;Q8N5C6-2 SRBD1 S1 RNA-binding domain-containing protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 54.135 48.495 2;3 0.00026985 5 36208 20150910_Q1_SA_NiHu_Masterprac_group13_B 95.618 63.984 17923000 1429400 6379900 7013900 3099800 0 0 6278 1302 6185 27419;27420;27421;27422;27423 18097;18098;18099;18100;18101 18097 4 RIAACQEQILR Unmodified 1356.7296 0.72960258 1442 Q9BRP1 PDCD2L Programmed cell death protein 2-like yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 89.238 81.542 3 3.1724E-20 7 55608 20150910_Q1_SA_NiHu_Masterprac_group10_B 120.06 97.5 16481000 1977700 1840200 1107800 1703400 5163000 4689100 6279 1442 6186 27424;27425;27426;27427;27428;27429 18102;18103;18104;18105;18106;18107;18108 18106 7 RIAELSEDDQK Unmodified 1302.6416 0.64155866 1471 Q9BZE4;B7Z7A3;B4DY13 GTPBP4 Nucleolar GTP-binding protein 1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 3 1 1 2 58.735 51.999 2;3 0.00090953 6 37307 20150910_Q1_SA_NiHu_Masterprac_group10_B 90.434 63.648 7075000 537470 1046700 1307700 298720 707090 3177200 6280 1471 6187 27430;27431;27432;27433;27434;27435;27436;27437;27438 18109;18110;18111;18112;18113;18114 18114 6 RIAVHHNSVEDVPEEK Unmodified 1857.9333 0.933324 1604 Q9UKY1 ZHX1 Zinc fingers and homeoboxes protein 1 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 3 1 2 2 65.321 57.044 3;4 0.0013297 8 40865 20150910_Q1_SA_NiHu_Masterprac_group10_B 56.514 33.523 16333000 0 3374400 4139000 1332500 2886700 4600600 6281 1604 6188 27439;27440;27441;27442;27443;27444;27445;27446;27447;27448 18115;18116;18117;18118;18119;18120;18121;18122 18122 8 RIEELNKTANGNVEAK Unmodified 1784.9381 0.93807503 754;1078 Q13330;Q13330-3;E7ESY4;Q13330-2;H7C3F3;O94776 MTA1;MTA2 Metastasis-associated protein MTA1;Metastasis-associated protein MTA2 no no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 60.524 55.861 3 0.0030854 1 45821 20150910_Q1_SA_NiHu_Masterprac_group13_C 80.508 52.982 22123000 0 6519400 10023000 377200 0 5203300 6282 1078;754 6189 27449;27450;27451;27452 18123 18123 1 RIEFAEQINK Unmodified 1246.667 0.66698555 1486 Q9H307;Q9H307-2 PNN Pinin yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 98.128 91.851 3 0.013944 2 62883 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.63 21.121 4897400 529310 310730 0 285460 1482100 2289900 6283 1486 6190 27453;27454;27455;27456;27457 18124;18125 18124 2 RIEPAEELNSNDMK Unmodified 1644.7777 0.77773456 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 4 3 98.089 89.228 2;3 0.00066948 10 60501 20150910_Q1_SA_NiHu_Masterprac_group13_B 70.197 45.772 271820000 17481000 36247000 48383000 16085000 68870000 84758000 6284 919;920 6191 27458;27459;27460;27461;27462;27463;27464;27465;27466;27467;27468;27469;27470;27471;27472;27473 18126;18127;18128;18129;18130;18131;18132;18133;18134;18135 18126 10 RIEPAEELNSNDMK Oxidation (M) 1660.7726 0.77264919 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 1 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 77.753 68.629 3 0.0056477 1 53187 20150910_Q1_SA_NiHu_Masterprac_group15_C 61.444 44.697 8562300 0 1674600 1445100 0 1100800 4341800 6285 919;920 6191 27474;27475;27476;27477 18136 18136 107 1 RIEPAEELNSNDMKTNK Unmodified 1987.9633 0.9633035 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 87.307 79.678 3 3.0884E-31 6 61551 20150910_Q1_SA_NiHu_Masterprac_group13_C 108.25 95.365 17631000 2031600 3930300 3359400 2814400 2376700 3118300 6286 919;920 6192 27478;27479;27480;27481;27482;27483 18137;18138;18139;18140;18141;18142 18139 6 RIFHTVTTTDDPVIRK Unmodified 1898.0374 0.037395144 50 B0QYA5;B4DVY1;A8MWD3;O15371 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 91.044 90.016 4 0.0052378 1 61508 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.391 34.842 3108900 0 0 0 780880 0 2328000 6287 50 6193 27484;27485 18143 18143 1 RIGAPSADQTLTNMNR Unmodified 1743.8686 0.86861526 1411 Q96PU4 UHRF2 E3 ubiquitin-protein ligase UHRF2 yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 109.43 97.036 3 2.5614E-18 4 66084 20150910_Q1_SA_NiHu_Masterprac_group15_B 102.63 81.316 14504000 1728600 0 2635400 0 296110 9843900 6288 1411 6194 27486;27487;27488;27489;27490 18144;18145;18146;18147 18146 4 RIGVPSATEIIK Unmodified 1282.7609 0.76088593 1534 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 2 130.38 120.06 2;3 1.1777E-65 5 77363 20150910_Q1_SA_NiHu_Masterprac_group10_C 142.76 82.699 48788000 6044400 1573300 2894900 0 2723000 35552000 6289 1534 6195 27491;27492;27493;27494;27495;27496 18148;18149;18150;18151;18152 18152 3 RIGVPSATEIIKASSK Unmodified 1655.957 0.95701956 1534 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 130.61 125.29 3 2.9715E-37 4 85648 20150910_Q1_SA_NiHu_Masterprac_group15_B 116.96 80.365 27540000 12650000 6766300 0 2764200 0 5359400 6290 1534 6196 27497;27498;27499;27500 18153;18154;18155;18156 18154 3 RIHISQEDNVANK Unmodified 1522.7852 0.7852032 1536 Q9NRL2-2;Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 58.937 52.539 3 0.0002922 4 37414 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.906 71.131 5612900 0 924810 748220 372770 1437100 2130000 6291 1536 6197 27501;27502;27503;27504;27505 18157;18158;18159;18160 18157 4 RIHQLEQQVEK Unmodified 1406.763 0.7630112 1552 Q9NVV9 THAP1 THAP domain-containing protein 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 48.028 47.074 3 0.0093167 1 33670 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.149 18.435 977300 0 0 0 0 0 977300 6292 1552 6198 27506 18161 18161 1 RILDEIEEHNIK Unmodified 1507.7995 0.79945628 172 C9J2Q4;H7C2Y0;B5MCX3;Q15019;Q15019-2 SEPT2 Septin-2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 115.59 113.31 3 0.0063941 1 77257 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.034 27.711 3511700 0 0 0 658130 0 2853600 6293 172 6199 27507;27508 18162 18162 1 RILELDQFKGQQGQK Unmodified 1786.969 0.96898123 60 B1AHC9;B1AHC8;P12956;B1AHC7 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 2 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 113.44 103.77 3 0.0045249 2 73847 20150910_Q1_SA_NiHu_Masterprac_group15_C 68.751 48.227 17539000 0 0 5031500 3826000 2922000 5759300 6294 60 6200 27509;27510;27511;27512 18163;18164 18164 2 RILELSGSSSEDSEK Unmodified 1635.7952 0.79515877 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 2 2 86.045 78.704 2;3 0.00026624 8 54278 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.54 65.445 12843000 881980 2991500 252160 727420 2550500 5439400 6295 1012 6201 27513;27514;27515;27516;27517;27518;27519;27520;27521 18165;18166;18167;18168;18169;18170;18171;18172 18166 8 RILFSIVHDK Unmodified 1226.7135 0.71354181 427 Q9UHL9-2;Q9UHL9;E9PFE2;Q9UHL9-3 GTF2IRD1 General transcription factor II-I repeat domain-containing protein 1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 112.94 110.91 3 2.4473E-09 3 75729 20150910_Q1_SA_NiHu_Masterprac_group15_B 115.91 95.628 6526200 0 0 0 551850 0 5974300 6296 427 6202 27522;27523;27524 18173;18174;18175 18174 3 RILQSLEK Unmodified 985.59203 0.59202969 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 68.844 68.844 2 0.0002861 1 47933 20150910_Q1_SA_NiHu_Masterprac_group13_B 115.49 19.679 1702400 0 0 0 1702400 0 0 6297 531 6203 27525 18176 18176 1 RILVLNGGYRGNEGTLESINEK Unmodified 2431.2819 0.28193553 136 B4DX32;O60870;F5GXB3 KIN DNA/RNA-binding protein KIN17 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 2 130.97 130.77 3;4 5.8427E-06 2 83956 20150910_Q1_SA_NiHu_Masterprac_group13_B 66.777 37.302 120500000 0 2491300 0 118010000 0 0 6298 136 6204 27526;27527;27528 18177;18178 18177 2 RIQDPTEDAEAEDTPRK Unmodified 1969.9341 0.93411186 779 O96028-5;O96028-3;O96028;H0Y9L4 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 2 2 69.738 62.333 3;4 3.4985E-13 14 50367 20150910_Q1_SA_NiHu_Masterprac_group13_C 99.392 77.341 42998000 9482600 8125100 8559500 3971500 3686900 9172500 6299 779 6205 27529;27530;27531;27532;27533;27534;27535;27536;27537;27538;27539;27540;27541;27542 18179;18180;18181;18182;18183;18184;18185;18186;18187;18188;18189;18190;18191;18192 18181 13 RISEQFTAMFR Oxidation (M) 1400.6871 0.68706906 1007;542 P68371;E7EWR1;Q5ST81;F5H8C9;Q9BVA1;Q13885;B4DFH6;B4DJ43;P04350;A8K854;Q13509;F8VUJ7;Q5JP53;F8VYX6;F8VW92;P07437;E9PBJ4 TUBB4B;TUBB;TUBB2B;TUBB2A;TUBB4A;TUBB3 Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain;Tubulin beta-3 chain;Tubulin beta chain no no 0 1 1 By matching By matching By matching By matching By matching By MS/MS 1 117.51 112.95 3 0.0033858 1 77075 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.226 36.271 0 0 0 0 0 0 0 6300 1007;542 6206 27543 18193 18193 61 1 RISGLIYEETRGVLK Unmodified 1732.9836 0.98356866 994 P62805 HIST1H4A Histone H4 yes yes 0 0 2 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 132.67 115.95 3 0.0094771 2 78693 20150910_Q1_SA_NiHu_Masterprac_group10_C 57.794 29.474 8159300 6157700 0 0 0 2001500 0 6301 994 6207 27544;27545 18194;18195 18195 2 RISIGGGSCAISGGYGSR Unmodified 1753.853 0.85296519 287;788 P02538;CON__P02538;E7EUE8;P04259;CON__P04259;F5H6G5 KRT6A;KRT6B Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 110.92 100.94 3 1.9001E-05 5 66706 20150910_Q1_SA_NiHu_Masterprac_group10_B 87.323 87.323 52402000 5759000 6028700 3890800 31385000 5338400 0 + 6302 287;788 6208 27546;27547;27548;27549;27550;27551 18196;18197;18198;18199;18200 18199 5 RISISTSGGSFR Unmodified 1266.668 0.66804818 299 P13647;CON__P13647;F8VV57 KRT5 Keratin, type II cytoskeletal 5 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 96.523 90.239 3 0.0036321 1 60918 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.162 37.662 17357000 0 2344600 0 12939000 2073800 0 + 6303 299 6209 27552;27553;27554 18201 18201 1 RISSKSPGHMVILDQTK Unmodified 1896.0251 0.025115899 1554 Q9NWH9;A8K5V8 SLTM SAFB-like transcription modulator yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 87.389 81.105 4 0.0060075 1 60462 20150910_Q1_SA_NiHu_Masterprac_group15_C 45.883 34.277 3937700 0 509130 0 323850 3104800 0 6304 1554 6210 27555;27556;27557 18202 18202 1 RITADQALKHPWVCQR Unmodified 1978.0319 0.031932611 612 H0Y6G2;Q8WU40;Q13555-10;Q5SWX3;Q13555-3;Q13555-5;Q13555-4;Q13555-7;Q13555-9;Q13555-2;Q13555-8;Q13555;Q13555-6 CAMK2G Calcium/calmodulin-dependent protein kinase type II subunit gamma yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 114.26 101.07 4 0.011829 1 67749 20150910_Q1_SA_NiHu_Masterprac_group10_C 43.557 12.468 1597300 1597300 0 0 0 0 0 6305 612 6211 27558 18203 18203 1 RITQETFDAVLQEK Unmodified 1676.8733 0.87334951 1284 Q8IX01-4;Q8IX01-3;Q8IX01 SUGP2 SURP and G-patch domain-containing protein 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 132.61 127.65 3 0.0078624 1 87561 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.217 29.322 7013300 0 0 0 0 0 7013300 6306 1284 6212 27559 18204 18204 1 RKAQAVSEEEEEEEGK Unmodified 1846.8545 0.85446456 588 G3V529;Q9GZR7;F5H4J5;Q4V9L5 DDX24 ATP-dependent RNA helicase DDX24 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 36.033 31.54 3 1.4662E-11 1 25318 20150910_Q1_SA_NiHu_Masterprac_group13_C 100.23 84.47 4838300 0 837160 1330600 905990 634130 1130400 6307 588 6213 27560;27561;27562;27563;27564 18205 18205 1 RKASGPPVSELITK Unmodified 1481.8566 0.85657723 818 P10412;P16402 HIST1H1E;HIST1H1D Histone H1.4;Histone H1.3 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 94.269 86.187 3 5.2509E-20 7 58367 20150910_Q1_SA_NiHu_Masterprac_group10_C 111.81 80.737 155720000 42770000 21355000 12348000 13553000 41805000 23889000 6308 818 6214 27565;27566;27567;27568;27569;27570;27571 18206;18207;18208;18209;18210;18211;18212 18212 7 RKATGPPVSELITK Unmodified 1495.8722 0.8722273 842 P16401 HIST1H1B Histone H1.5 yes yes 0 0 2 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 98.173 88.631 3 1.1802E-19 2 65984 20150910_Q1_SA_NiHu_Masterprac_group15_C 110.25 92.178 50919000 18141000 13103000 0 0 19675000 0 6309 842 6215 27572;27573;27574 18213;18214 18213 2 RKAVEAAQLAEDLK Unmodified 1540.8573 0.85730551 634 O75150-4;H3BP71;O75150;F8W8Z4;F6SYU7;Q6ZN99 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 100.23 97.893 3 0.037446 1 66690 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.709 25.444 2522300 0 1011800 0 0 0 1510500 6310 634 6216 27575;27576 18215 18215 0 RKEFEDDLVK Unmodified 1277.6616 0.66156582 709 O43148;O43148-2 RNMT mRNA cap guanine-N7 methyltransferase yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 76.24 69.571 3 4.5651E-34 1 48266 20150910_Q1_SA_NiHu_Masterprac_group15_B 131.42 68.344 9174100 0 1456500 0 0 2023800 5693900 6311 709 6217 27577;27578;27579 18216 18216 1 RKELSQNTDESGLNDEAIAK Unmodified 2217.0873 0.087318043 896 P35251-2;P35251 RFC1 Replication factor C subunit 1 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 85.029 76.868 3;4 0.00055034 2 52954 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.414 57.414 25918000 5390800 7606200 5162000 1502700 2606600 3649400 6312 896 6218 27580;27581;27582;27583;27584;27585;27586;27587;27588 18217;18218 18218 2 RKGDEVDGVDEVAK Unmodified 1515.7529 0.75290002 815 P09874;F8WC10 PARP1 Poly [ADP-ribose] polymerase 1 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 3 2 2 3 1 59.902 52.582 2;3 3.3554E-29 8 38726 20150910_Q1_SA_NiHu_Masterprac_group10_B 115.04 73.006 127450000 17875000 17997000 13380000 13859000 19346000 44991000 6313 815 6219 27589;27590;27591;27592;27593;27594;27595;27596;27597;27598;27599;27600;27601;27602 18219;18220;18221;18222;18223;18224;18225;18226 18224 8 RKGFNEGLWEIDNNPK Unmodified 1915.9541 0.95405945 741 O75475;O75475-2 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 2 126.72 124.09 3;4 0.013904 2 83856 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.242 21.487 7623600 0 291970 0 576660 0 6755000 6314 741 6220 27603;27604;27605;27606 18227;18228 18228 2 RKGFSEGLWEIENNPTVK Unmodified 2103.0749 0.074902863 954 P51858;A8K8G0;Q5SZ08;Q5SZ07 HDGF Hepatoma-derived growth factor yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 132.6 132.29 4 0.0098347 1 85217 20150910_Q1_SA_NiHu_Masterprac_group13_B 41.323 18.097 19695000 0 6107300 0 13587000 0 0 6315 954 6221 27607;27608 18229 18229 1 RKGGPGSTLSFVGK Unmodified 1389.7728 0.7728476 1437 Q9BQ61 C19orf43 Uncharacterized protein C19orf43 yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 86.326 77.774 3 0.0043294 4 60561 20150910_Q1_SA_NiHu_Masterprac_group13_C 83.869 62.473 55661000 3827500 0 8248700 6440800 16093000 21051000 6316 1437 6222 27609;27610;27611;27612;27613 18230;18231;18232;18233 18231 4 RKGVHCVMSLGVPGPATLAK Unmodified 2077.1289 0.12886946 683 Q96CP2;I3L1Y9;I3L4I0 FLYWCH2 FLYWCH family member 2 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 2 1 130.79 116.63 3;4 0.00016742 4 81623 20150910_Q1_SA_NiHu_Masterprac_group13_C 76.068 64.313 109410000 16859000 0 28323000 0 0 64228000 6317 683 6223 27614;27615;27616;27617 18234;18235;18236;18237 18234 4 RKLDAEDVIGSR Unmodified 1357.7314 0.73137672 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 93.558 82.617 3 6.7497E-26 2 56697 20150910_Q1_SA_NiHu_Masterprac_group15_B 119.25 82.575 9961600 883820 0 1756800 0 1660300 5660700 6318 919;920 6224 27618;27619;27620;27621 18238;18239 18239 2 RKLESLDALEPEEK Unmodified 1655.873 0.87301516 1115 Q14807;B7Z265 KIF22 Kinesin-like protein KIF22 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 107 99.667 3 0.01306 1 66095 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.079 58.079 3762700 0 1539800 0 0 422630 1800200 6319 1115 6225 27622;27623;27624 18240 18240 1 RKLLENSTLNSK Unmodified 1401.794 0.79397698 628 Q6JHV3;H0YMI4;Q9Y6I4;B3KMX7;H0YLB7;H0YKU8;F5H1A6;H0YL81;B4DV65;H0YLG0 USP3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 3 yes no 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 59.009 52.533 3 1.849E-07 3 38353 20150910_Q1_SA_NiHu_Masterprac_group13_B 106.29 68.353 46509000 2419900 4214100 14210000 7751400 9462500 8450700 6320 628 6226 27625;27626;27627;27628;27629;27630 18241;18242;18243 18241 3 RKLSDDPCPVESK Unmodified 1529.7508 0.75079153 727 O60244 MED14 Mediator of RNA polymerase II transcription subunit 14 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 50.579 44.705 3 0.0037533 1 32136 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.894 45.372 6135300 596440 1015200 1002800 799000 809900 1912000 6321 727 6227 27631;27632;27633;27634;27635;27636 18244 18244 1 RKMEESDEEAVQAK Unmodified 1648.7726 0.77264919 314 E7EMR1;D4QA03;E9PIL6;Q9Y2K7-3;Q9Y2K7-2;Q9Y2K7 KDM2A Lysine-specific demethylase 2A yes no 0 0 2 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 38.846 35.298 3 0.0034579 3 24751 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.531 58.469 3110000 0 667110 0 564390 586510 1292000 6322 314 6228 27637;27638;27639;27640 18245;18246;18247 18246 2 RKMVNDAEPDTK Unmodified 1402.6875 0.68746299 1550 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 32.298 27.159 3 0.013209 1 19066 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.295 35.089 2838400 0 868620 1969700 0 0 0 6323 1550 6229 27641;27642 18248 18248 1 RKPDYEPVENTDEAQK Unmodified 1917.9068 0.90683448 276 H0Y6A0;C9JZR4;E9PB03;Q9NP61 ARFGAP3 ADP-ribosylation factor GTPase-activating protein 3 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 59.377 52.939 3 1.1863E-06 2 37235 20150910_Q1_SA_NiHu_Masterprac_group13_B 92.952 84.652 6340900 0 1025500 1289500 1152100 1159800 1714000 6324 276 6230 27643;27644;27645;27646;27647 18249;18250 18249 2 RKPSTPLSEVIVK Unmodified 1452.8664 0.86641364 1351 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 96.493 96.493 3 0.020693 1 64411 20150910_Q1_SA_NiHu_Masterprac_group13_B 70.373 43.714 0 0 0 0 0 0 0 6325 1351 6231 27648 18251 18251 1 RKSEDGTPAEDGTPAATGGSQPPSMGR Unmodified 2656.2147 0.21472018 682 I3L1L3;Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 2 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 78.423 70.911 4 6.491E-17 4 49055 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.974 63.351 18408000 3090500 1454000 2245500 1915000 4798000 4904700 6326 682 6232 27649;27650;27651;27652;27653;27654 18252;18253;18254;18255 18253 4 RKSNEMITNLGK Unmodified 1389.7398 0.73983292 1248 Q7Z2T5 TRMT1L TRMT1-like protein yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 60.022 60.022 3 0.009677 1 42010 20150910_Q1_SA_NiHu_Masterprac_group13_B 71.888 47.463 5863800 0 0 0 5863800 0 0 6327 1248 6233 27655 18256 18256 1 RKSPGVAAAVAEDGGLK Unmodified 1624.8897 0.88966827 468 E9PQV9;Q9BTE7;E9PLH8;E9PM78;H0YD80;E9PLS2;E9PM04 DCUN1D5 DCN1-like protein 5 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 88.945 81.489 3 0.010463 2 55825 20150910_Q1_SA_NiHu_Masterprac_group10_B 50.831 38.913 5670600 0 1127300 1278200 903780 378950 1982400 6328 468 6234 27656;27657;27658;27659;27660 18257;18258 18258 2 RLAADGRGLQTVHINENFAK Unmodified 2209.1716 0.17159721 583 Q13573;G3V3A4;G3V4X8 SNW1 SNW domain-containing protein 1 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 2 1 2 122.99 114.34 4;5 0.0060981 4 80447 20150910_Q1_SA_NiHu_Masterprac_group13_C 43.752 30.129 91521000 15522000 0 39404000 5878600 17627000 13089000 6329 583 6235 27661;27662;27663;27664;27665;27666;27667 18259;18260;18261;18262 18259 3 RLAETQEEISAEVAAK Unmodified 1743.9003 0.90029254 186 B7Z500;Q9Y383-2;Q9Y383;B7Z4Q3;C9JWT3 LUC7L2;C7orf55 Putative RNA-binding protein Luc7-like 2;UPF0562 protein C7orf55 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 109.44 101.92 3 3.5721E-07 3 69532 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.14 77.992 10605000 0 1752400 4541600 0 0 4311000 6330 186 6236 27668;27669;27670 18263;18264;18265 18264 3 RLAGGDWFTSR Unmodified 1264.6313 0.63126874 81 F5H3X9;B4DDF7;P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 122.83 118.07 3 0.0082608 1 80328 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.511 41.344 577860 0 0 0 0 0 577860 6331 81 6237 27671 18266 18266 1 RLAGTSGSDKGLSGK Unmodified 1432.7634 0.76340513 1570 Q9P016;Q9P016-2;E9PPQ6 THYN1 Thymocyte nuclear protein 1 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 32.759 30.751 3 0.0026418 1 20936 20150910_Q1_SA_NiHu_Masterprac_group10_B 77.24 77.24 851930 0 851930 0 0 0 0 6332 1570 6238 27672 18267 18267 1 RLAIKLPDDQIPK Unmodified 1505.893 0.89296274 1031 Q01813;H0Y3P8;Q5VSR7;B1APP6 PFKP 6-phosphofructokinase type C yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 131.31 126.35 3 5.3761E-15 1 86120 20150910_Q1_SA_NiHu_Masterprac_group15_B 109.95 94.985 5278300 0 0 0 0 0 5278300 6333 1031 6239 27673 18268 18268 1 RLASMATLLAR Unmodified 1201.6965 0.69651154 255 C9JJU9;Q96P11-2;G3V0G9;Q96P11;Q96P11-4 NSUN5 Putative methyltransferase NSUN5 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 132.21 129.43 3 5.9165E-05 4 85122 20150910_Q1_SA_NiHu_Masterprac_group13_B 103.91 77.123 15912000 0 6087200 0 0 0 9824400 6334 255 6240 27674;27675;27676 18269;18270;18271;18272 18269 4 RLCENIAGHLK Unmodified 1309.6925 0.69248879 785 P04040 CAT Catalase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 78.76 73.546 3 0.0022783 3 51004 20150910_Q1_SA_NiHu_Masterprac_group13_B 77.062 54.035 3480100 0 701240 997010 1095200 0 686690 6335 785 6241 27677;27678;27679;27680 18273;18274;18275 18273 3 RLEEEEAAAEK Unmodified 1273.615 0.61500956 1189 Q5T280;E7ESY7 C9orf114 Uncharacterized protein C9orf114 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 45.839 39.452 3 0.001072 4 31886 20150910_Q1_SA_NiHu_Masterprac_group13_C 89.189 59.262 4570600 511810 1049300 1721200 0 515830 772530 6336 1189 6242 27681;27682;27683;27684;27685 18276;18277;18278;18279 18276 4 RLEEEEAAAEKEDR Unmodified 1673.7857 0.78565671 1189 Q5T280;E7ESY7 C9orf114 Uncharacterized protein C9orf114 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 58.072 51.579 3 2.9669E-07 6 36902 20150910_Q1_SA_NiHu_Masterprac_group10_B 97.45 84.387 25727000 2331300 7493700 4949800 1227200 2840700 6884100 6337 1189 6243 27686;27687;27688;27689;27690;27691 18280;18281;18282;18283;18284;18285 18283 6 RLEINRGHMTTEAK Unmodified 1654.8573 0.85732229 1423 Q99459 CDC5L Cell division cycle 5-like protein yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 60.724 53.33 4 0.0036175 1 43504 20150910_Q1_SA_NiHu_Masterprac_group15_C 58.32 39.076 5314400 0 0 877630 612190 2295600 1528900 6338 1423 6244 27692;27693;27694;27695 18286 18286 1 RLELDDNLDTERPVQK Unmodified 1939.9963 0.99631819 57 B0QYQ2;Q96RU7 TRIB3 Tribbles homolog 3 yes no 0 0 2 By MS/MS By matching By matching By MS/MS By matching By matching 2 1 112.06 102.73 3;4 0.0040432 3 68921 20150910_Q1_SA_NiHu_Masterprac_group10_C 51.073 41.261 23640000 20615000 0 0 3024600 0 0 6339 57 6245 27696;27697;27698 18287;18288;18289 18289 3 RLETPEPGQQGLQAAAR Unmodified 1820.9493 0.94930842 680 I3L476;Q9BSJ6-2;I3L1U3;I3L419;Q9BSJ6;I3L156 FAM64A Protein FAM64A yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 100.53 92.365 3 5.6356E-45 5 62075 20150910_Q1_SA_NiHu_Masterprac_group10_B 115.87 98.238 34148000 2330400 7441600 9533100 307230 1674900 12860000 6340 680 6246 27699;27700;27701;27702;27703;27704 18290;18291;18292;18293;18294 18293 5 RLFVMEESTERK Unmodified 1523.7766 0.77661235 1154 Q16600 ZNF239 Zinc finger protein 239 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 95.107 86.209 3 0.005797 1 58834 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.169 47.491 2510100 0 0 339800 345760 732250 1092300 6341 1154 6247 27705;27706;27707;27708 18295 18295 1 RLGAAALVPEAQDSQVTSTK Unmodified 2041.0804 0.080382171 1310 Q8N9M1-3;Q8N9M1-2;Q8N9M1 C19orf47 Uncharacterized protein C19orf47 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 131.13 114.42 3 0.01092 1 75873 20150910_Q1_SA_NiHu_Masterprac_group10_C 58.339 34.31 2458400 1739000 0 0 0 719430 0 6342 1310 6248 27709;27710 18296 18296 0 RLGAAALVPEAQDSQVTSTKSK Unmodified 2256.2074 0.2073736 1310 Q8N9M1-3;Q8N9M1-2;Q8N9M1 C19orf47 Uncharacterized protein C19orf47 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 110.93 102 4 0.011189 2 69745 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.379 29.908 6101800 1759100 1549900 944480 0 0 1848300 6343 1310 6249 27711;27712;27713;27714 18297;18298 18297 2 RLGAGEQDAEEIK Unmodified 1414.7052 0.70522155 1226 Q6P5Z2 PKN3 Serine/threonine-protein kinase N3 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 64.476 62.393 3 0.0058112 2 43693 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.276 31.947 2002400 0 748230 0 0 0 1254100 6344 1226 6250 27715;27716 18299;18300 18299 2 RLGLPGDEVDNK Unmodified 1311.6783 0.67827852 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 94.607 87.638 3 0.0012128 3 60055 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.987 47.557 3478900 0 841300 0 0 687860 1949800 6345 1012 6251 27717;27718;27719 18301;18302;18303 18301 3 RLGLPGDEVDNKVK Unmodified 1538.8417 0.84165545 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 97.184 89.171 3 3.9919E-05 5 60199 20150910_Q1_SA_NiHu_Masterprac_group10_B 94.45 77.198 94957000 10547000 17327000 8979500 5667400 6434500 46002000 6346 1012 6252 27720;27721;27722;27723;27724;27725 18304;18305;18306;18307;18308 18306 5 RLGLSCANCHTTTTTLWRR Unmodified 2303.1375 0.13753667 1363 Q92908-2;Q92908 GATA6 Transcription factor GATA-6 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 116.4 106 4 0.0018125 1 72658 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.112 41.764 6180600 0 0 0 0 1193000 4987600 6347 1363 6253 27726;27727 18309 18309 1 RLGSSYRALPK Unmodified 1246.7146 0.71460444 1420 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 66.13 59.661 3 0.030218 1 42005 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.278 28.861 11209000 0 2442400 0 0 3130000 5636400 6348 1420 6254 27728;27729;27730 18310 18310 1 RLIDLHSPSEIVK Unmodified 1505.8566 0.85657723 979 P60866;P60866-2;G3XAN0 RPS20 40S ribosomal protein S20 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 129.57 119.25 3 6.5896E-47 2 79943 20150910_Q1_SA_NiHu_Masterprac_group15_C 127.79 99.826 50678000 0 1019700 2513000 0 15462000 31683000 6349 979 6255 27731;27732;27733;27734 18311;18312 18312 2 RLLKEEDMTK Unmodified 1261.67 0.67002202 684 I3L2M0;I3L2Z3;I3L3H2;I3L3F6;P38919 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 0 0 2 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 57.642 51.345 3 0.014708 2 42057 20150910_Q1_SA_NiHu_Masterprac_group15_C 87.568 58.86 3990700 0 603180 707690 390860 987600 1301400 6350 684 6256 27735;27736;27737;27738;27739 18313;18314 18314 2 RLLNTWTNRYPDAK Unmodified 1746.9166 0.91655173 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 110.79 102.71 3 0.0044219 1 70098 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.456 44.008 55041000 0 2905200 7170800 6818700 3737300 34409000 6351 1012 6257 27740;27741;27742;27743;27744 18315 18315 1 RLLTSITTK Unmodified 1031.6339 0.63389451 1533 Q9NQW6;Q9NQW6-2;H7C3S1;H7C1K5;H7C1C2 ANLN Actin-binding protein anillin yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 86.077 77.545 2 0.030153 3 58902 20150910_Q1_SA_NiHu_Masterprac_group15_C 93.556 57.904 55320000 3501400 0 9222900 4851400 14335000 23409000 6352 1533 6258 27745;27746;27747;27748;27749 18316;18317;18318 18317 3 RLNPEALQAEQLNKQQR Unmodified 2035.0923 0.092284261 1594 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YAV4 TRPS1 Zinc finger transcription factor Trps1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 101.27 91.481 3 0.0089098 1 62631 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.112 32.95 1615800 226540 0 0 0 448500 940730 6353 1594 6259 27750;27751;27752 18319 18319 1 RLNQSAENGSSLPSAASSCAEAR Unmodified 2362.0931 0.093148477 1315 Q8NB90;Q8NB90-3;Q8NB90-2 SPATA5 Spermatogenesis-associated protein 5 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 84.639 82.706 3 0.0030122 1 56326 20150910_Q1_SA_NiHu_Masterprac_group10_B 41.911 34.821 1147700 0 639130 0 0 0 508610 6354 1315 6260 27753;27754 18320 18320 1 RLNVWDLSK Unmodified 1129.6244 0.62439245 1153;1051 Q16576;E9PC52;Q16576-2;Q5JP02;Q09028-3;Q09028;Q09028-2;Q09028-4;H0YCT5;H0YF10;H0YDK2;H0YEU5;B4DRT0 RBBP7;RBBP4 Histone-binding protein RBBP7;Histone-binding protein RBBP4 no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.84 125.88 2 4.832E-11 1 85631 20150910_Q1_SA_NiHu_Masterprac_group15_B 125.68 74.616 54968000 0 0 0 0 0 54968000 6355 1153;1051 6261 27755 18321 18321 1 RLPDAHSDYAR Unmodified 1299.632 0.63199703 1410 Q96PK6 RBM14 RNA-binding protein 14 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 55.47 48.521 3 0.002584 2 34186 20150910_Q1_SA_NiHu_Masterprac_group13_B 74.237 57.069 4669800 799290 0 428640 605920 1331600 1504400 6356 1410 6262 27756;27757;27758;27759;27760 18322;18323 18322 2 RLPFSSLSSLASLHKPER Unmodified 2024.1167 0.1167081 1318 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 133 121.06 4 0.00078461 2 81953 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.081 45.09 15060000 0 0 5125200 5488300 4446200 0 6357 1318 6263 27761;27762;27763 18324;18325 18325 2 RLPLRAVNLNLR Unmodified 1433.8943 0.89430014 680 I3L476;Q9BSJ6-2;I3L1U3;I3L419;Q9BSJ6;I3L156;I3L427 FAM64A Protein FAM64A yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 131.13 126.17 3 1.1012E-36 1 85957 20150910_Q1_SA_NiHu_Masterprac_group15_B 125.68 67.052 16969000 0 0 0 0 0 16969000 6358 680 6264 27764 18326 18326 1 RLPNGTELRGR Unmodified 1267.7109 0.71091605 594 G5E9E2;Q5J9I4;P29372-2;P29372;A2IDA3 MPG DNA-3-methyladenine glycosylase yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 62.033 53.936 3 0.010595 2 38343 20150910_Q1_SA_NiHu_Masterprac_group10_B 82.831 58.555 80733000 0 6851600 6195700 0 10497000 57189000 6359 594 6265 27765;27766;27767;27768 18327;18328 18328 2 RLQELEGQIADLKK Unmodified 1639.9257 0.92571943 768 O95239;O95239-2 KIF4A Chromosome-associated kinesin KIF4A yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 126.55 116.27 3 4.3324E-07 2 81238 20150910_Q1_SA_NiHu_Masterprac_group13_C 95.755 69.164 34688000 0 2624600 9432400 0 9412900 13218000 6360 768 6266 27769;27770;27771;27772 18329;18330 18329 2 RLQGLSASDVTEQIIK Unmodified 1756.9683 0.96831253 1581 Q9UBB5 MBD2 Methyl-CpG-binding domain protein 2 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 133.05 124.77 2;3 1.323E-11 4 88373 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.208 62.943 727650000 0 73528000 160680000 21517000 4335200 467590000 6361 1581 6267 27773;27774;27775;27776;27777 18331;18332;18333;18334 18333 4 RLQGQLEQGDDTAAER Unmodified 1785.8606 0.86055299 1321 Q8NE71;Q8NE71-2;H0YGW7 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 68.283 61.364 3 0.0013523 2 42971 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.339 40.099 4290200 790330 890330 0 0 870290 1739300 6362 1321 6268 27778;27779;27780;27781 18335;18336 18335 2 RLQGQLEQGDDTAAERLEK Unmodified 2156.0822 0.082173085 1321 Q8NE71;Q8NE71-2;H0YGW7 ABCF1 ATP-binding cassette sub-family F member 1 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 2 95.899 88.689 3;4 2.0083E-05 8 67002 20150910_Q1_SA_NiHu_Masterprac_group13_C 84.249 65.426 24399000 6014800 3580400 3614000 2512300 2781800 5895200 6363 1321 6269 27782;27783;27784;27785;27786;27787;27788;27789;27790;27791;27792 18337;18338;18339;18340;18341;18342;18343;18344 18338 8 RLQQQQRPEDAEDGAEGGGK Unmodified 2168.0206 0.020635461 1050 Q08J23-2;Q08J23;D6RAS3 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1 43.586 38.286 4 3.7356E-05 4 32297 20150910_Q1_SA_NiHu_Masterprac_group15_C 82.121 71.322 5902400 849520 857790 890630 928970 1050700 1324800 6364 1050 6270 27793;27794;27795;27796;27797;27798;27799 18345;18346;18347;18348 18347 4 RLRYHDEADQSALQR Unmodified 1856.9242 0.9241563 1059 Q12789-3;Q12789;H7BYG6;H3BRD0 GTF3C1 General transcription factor 3C polypeptide 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 56.704 55.65 4 0.039815 1 39323 20150910_Q1_SA_NiHu_Masterprac_group15_B 36.944 18.871 2543600 0 0 0 0 0 2543600 6365 1059 6271 27800 18349 18349 1 RLSSGEDTTELRK Unmodified 1490.7689 0.76888444 1579 Q9P2N5 RBM27 RNA-binding protein 27 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 48.55 42.893 3 6.2642E-15 6 30543 20150910_Q1_SA_NiHu_Masterprac_group10_B 109.44 109.44 21454000 2367000 4375100 4830800 1472000 3754300 4655200 6366 1579 6272 27801;27802;27803;27804;27805;27806 18350;18351;18352;18353;18354;18355 18353 6 RLTDSNLKVPEEK Unmodified 1527.8257 0.82567103 1353 Q92576-2;Q92576;E7EVH3;E7ER40 PHF3 PHD finger protein 3 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 87.685 78.611 3 4.151E-47 6 54376 20150910_Q1_SA_NiHu_Masterprac_group15_B 130.61 76.589 71221000 14181000 11833000 17775000 0 11282000 16150000 6367 1353 6273 27807;27808;27809;27810;27811;27812 18356;18357;18358;18359;18360;18361 18358 6 RLTSECVSSNPYSKPSSK Unmodified 2025.979 0.97895357 567 F8WBE0;Q8IYA6 CKAP2L Cytoskeleton-associated protein 2-like yes no 0 0 2 By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 1 1 1 1 1 69.717 62.297 3 3.2327E-12 5 44919 20150910_Q1_SA_NiHu_Masterprac_group10_C 87.676 61.264 8374800 1792200 790300 1707800 1110100 1417700 1556700 6368 567 6274 27813;27814;27815;27816;27817;27818;27819 18362;18363;18364;18365;18366 18366 4 RLTVNYEQCASGVHGPEGFHYK Unmodified 2548.1917 0.19174031 412 Q05CP4;E9PC80;P19525 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 128.14 114.64 4 2.7955E-11 4 80521 20150910_Q1_SA_NiHu_Masterprac_group13_C 88.983 72.574 14387000 0 0 9295600 0 1016900 4074200 6369 412 6275 27820;27821;27822 18367;18368;18369;18370 18367 4 RLVNSQCEFER Unmodified 1436.683 0.68304632 1529 Q9NPI1;Q9NPI1-2 BRD7 Bromodomain-containing protein 7 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 80.096 70.896 3 0.004856 1 49243 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.695 52.417 3279500 0 754930 545170 0 709650 1269700 6370 1529 6276 27823;27824;27825;27826 18371 18371 1 RLYGAAGPGAGLLR Unmodified 1370.7783 0.77826733 832 P13631-2 RARG Retinoic acid receptor gamma yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 122.95 118.19 3 0.011375 1 80430 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.426 14.422 482050 0 0 0 0 0 482050 6371 832 6277 27827 18372 18372 1 RLYSLALHPNAFK Unmodified 1528.8514 0.85143227 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 131.18 121.68 3 5.8042E-91 7 77453 20150910_Q1_SA_NiHu_Masterprac_group10_C 143.31 120.82 277410000 14788000 6916200 42534000 36564000 12541000 164070000 6372 1012 6278 27828;27829;27830;27831;27832;27833 18373;18374;18375;18376;18377;18378;18379 18379 6 RLYSLALHPNAFKR Unmodified 1684.9525 0.9525433 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 2 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 126.28 112.88 4 6.6703E-20 3 80598 20150910_Q1_SA_NiHu_Masterprac_group13_C 107.53 91.71 5556100 0 0 2470100 0 1086200 1999900 6373 1012 6279 27834;27835;27836 18380;18381;18382 18380 1 RMCRDLLQPR Unmodified 1343.6914 0.69144293 754 O94776;Q68DB1 MTA2;DKFZp686F2281 Metastasis-associated protein MTA2 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 73.486 66.634 3 9.5344E-09 2 46325 20150910_Q1_SA_NiHu_Masterprac_group15_B 117.01 71.353 13028000 0 879670 4207000 0 0 7941200 6374 754 6280 27837;27838;27839 18383;18384 18384 2 RMDHVDFDICTK Unmodified 1535.6861 0.68608279 1422 Q96T58 SPEN Msx2-interacting protein yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 115.26 104.91 3 0.040487 1 71774 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.613 31.338 1731600 0 0 0 0 1045600 685980 6375 1422 6281 27840;27841 18385 18385 1 RMEELHNQEMQK Unmodified 1571.7184 0.71844555 865 P23246;P23246-2;H0Y9K7 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 53.608 44.4 3 0.012241 3 37095 20150910_Q1_SA_NiHu_Masterprac_group15_C 50.354 27.776 2294800 0 374410 169000 0 1751400 0 6376 865 6282 27842;27843;27844 18386;18387;18388 18386 3 RMEELHNQEVQK Unmodified 1539.7464 0.74637486 1133 Q15233;F5GYZ3;C9JYS8;H7C367 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 46.705 41.33 3 0.0048958 4 28763 20150910_Q1_SA_NiHu_Masterprac_group13_B 59.418 33.435 5369000 0 799340 623750 654240 1151700 2140100 6377 1133 6283 27845;27846;27847;27848;27849 18389;18390;18391;18392 18389 4 RMHVQLSTSR Unmodified 1213.635 0.63497391 1457 Q9BWF3;E9PB51;Q9BQ04;B0LM41 RBM4;RBM4B;RBM14 RNA-binding protein 4;RNA-binding protein 4B;RNA-binding protein 14 yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 56.694 50.497 3 0.0080911 3 41302 20150910_Q1_SA_NiHu_Masterprac_group15_C 67.385 41.911 14263000 0 2367000 4810600 921120 1290100 4874400 6378 1457 6284 27850;27851;27852;27853;27854 18393;18394;18395 18395 3 RMIETAQVDER Unmodified 1346.6612 0.66124824 1605 Q9UL25 RAB21 Ras-related protein Rab-21 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 67.197 62.209 3 0.025036 1 50375 20150910_Q1_SA_NiHu_Masterprac_group13_C 46.069 19.362 3084900 0 749220 826640 150880 0 1358200 6379 1605 6285 27855;27856;27857;27858 18396 18396 1 RMLATDGAAQQAHTTR Unmodified 1726.8533 0.85329954 546 F8VXI8;Q9H9L4;F8VX10;H0YHR2;H0YIQ8 KANSL2 KAT8 regulatory NSL complex subunit 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 54.615 48.915 3 1.9657E-18 1 34833 20150910_Q1_SA_NiHu_Masterprac_group15_B 103.67 79.253 2503200 0 307770 0 0 1242900 952550 6380 546 6286 27859;27860;27861 18397 18397 1 RMQALEPYPANESSK Unmodified 1719.825 0.82501911 709 O43148;O43148-2;F5H2D9 RNMT mRNA cap guanine-N7 methyltransferase yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 2 93.888 85.555 2;3 0.001702 6 58569 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.148 42.268 35630000 3341600 3805400 4147600 6320700 8303200 9711800 6381 709 6287 27862;27863;27864;27865;27866;27867;27868;27869;27870 18398;18399;18400;18401;18402;18403 18400 4 RMQCECTPLSK Unmodified 1408.6261 0.62612507 479 Q9BYW2;F2Z317;H7C3H4;H7BZ93;Q9BYW2-3;Q9BYW2-2;F5H340 SETD2 Histone-lysine N-methyltransferase SETD2 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 61.217 53.142 3 0.0060895 2 43758 20150910_Q1_SA_NiHu_Masterprac_group13_C 62.799 49.791 2507400 0 695700 604860 0 415670 791150 6382 479 6288 27871;27872;27873;27874 18404;18405 18404 2 RMRPNSNTPVNETATASDSK Unmodified 2175.0338 0.033842684 701 O15014 ZNF609 Zinc finger protein 609 yes yes 0 0 2 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 55.067 49.01 4 0.00012683 4 35124 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.201 60.81 4053300 0 752210 645810 497040 874770 1283500 6383 701 6289 27875;27876;27877;27878;27879 18406;18407;18408;18409 18409 4 RMVCVEYPGVVRDVAK Unmodified 1876.9652 0.96515818 657 Q5T7U1;Q9Y5Q8-2;H7BY84;Q9Y5Q8;Q9Y5Q8-3 GTF3C5 General transcription factor 3C polypeptide 5 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 129.71 127.85 3 0.0068836 2 85280 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.973 33.862 11922000 0 3513000 0 1036600 0 7372300 6384 657 6290 27880;27881;27882 18410;18411 18410 2 RNAAPPPSNTEAPPGETR Unmodified 1860.9078 0.90783753 588 G3V529;Q9GZR7;F5H4J5;Q4V9L5;F5GYL3 DDX24 ATP-dependent RNA helicase DDX24 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 1 1 56.187 50.032 3 0.00080779 9 35214 20150910_Q1_SA_NiHu_Masterprac_group13_B 60.093 47.6 9880400 3049200 1152300 1189200 587730 2114300 1787700 6385 588 6291 27883;27884;27885;27886;27887;27888;27889;27890;27891 18412;18413;18414;18415;18416;18417;18418;18419;18420 18413 9 RNAEFLTCNIPTSNASNNMVTTEK Unmodified 2711.2643 0.26431291 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 131.82 122.32 3 7.6155E-85 8 84217 20150910_Q1_SA_NiHu_Masterprac_group10_B 119.52 91.981 421490000 51914000 100580000 75794000 37560000 14205000 141440000 6386 352;968 6292 27892;27893;27894;27895;27896;27897 18421;18422;18423;18424;18425;18426;18427;18428 18426 8 RNAEFLTCNIPTSNASNNMVTTEK Oxidation (M) 2727.2592 0.25922753 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 1 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 128.21 120.36 3 1.3184E-10 2 81513 20150910_Q1_SA_NiHu_Masterprac_group13_C 81.65 49.615 17084000 0 2857600 6686700 0 0 7539900 6387 352;968 6292 27898;27899;27900 18429;18430 18429 36 2 RNAEFLTCNIPTSNASNNMVTTEKVENGQEPVIK Unmodified 3804.8411 0.84108646 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 2 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 132.31 120.4 4 1.8157E-43 2 85240 20150910_Q1_SA_NiHu_Masterprac_group13_B 81.368 73.284 43181000 0 0 29881000 6358900 6940700 0 6388 352;968 6293 27901;27902;27903 18431;18432 18431 2 RNAVPITPTLNR Unmodified 1350.7732 0.77318195 289 CON__P02663 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 103.11 95.625 3 0.00098854 7 65343 20150910_Q1_SA_NiHu_Masterprac_group15_B 85.973 67.9 34007000 3467700 9013900 2840300 2835800 5550600 10299000 + 6389 289 6294 27904;27905;27906;27907;27908;27909;27910 18433;18434;18435;18436;18437;18438;18439 18436 7 RNEIDAEPPAK Unmodified 1238.6255 0.62551466 1337 Q8TDN6 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 53.557 48.724 3 0.0026149 4 36227 20150910_Q1_SA_NiHu_Masterprac_group10_C 73.951 44.401 6037900 991610 811120 0 523410 1788800 1923000 6390 1337 6295 27911;27912;27913;27914;27915;27916 18440;18441;18442;18443 18443 4 RNFILDQCNVYNSGQR Unmodified 1982.9381 0.93809181 640 H3BQZ7;Q1KMD3 hCG_2044799;HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 128.17 118.57 3 1.262E-11 4 76988 20150910_Q1_SA_NiHu_Masterprac_group10_C 96.435 72.382 14015000 4205600 0 0 1139100 2403100 6267600 6391 640 6296 27917;27918;27919;27920 18444;18445;18446;18447 18447 4 RNFILDQTNVSAAAQR Unmodified 1802.9387 0.93874373 1022;1023 Q00839;B3KX72;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 127.87 118.37 3 8.7256E-164 6 76971 20150910_Q1_SA_NiHu_Masterprac_group10_C 154.81 118.22 114930000 50116000 575800 41588000 5064400 17043000 539030 6392 1022;1023 6297 27921;27922;27923;27924;27925;27926 18448;18449;18450;18451;18452;18453 18453 5 RNFQEEQINTR Unmodified 1433.7011 0.70113922 1287 Q8IXB1;Q8IXB1-2;F8W884 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 66.012 58.778 3 1.0391E-69 7 41856 20150910_Q1_SA_NiHu_Masterprac_group10_B 144.1 91.936 72967000 7419300 16856000 9406600 5274700 10973000 23038000 6393 1287 6298 27927;27928;27929;27930;27931;27932;27933 18454;18455;18456;18457;18458;18459;18460 18458 7 RNFQEEQINTRDAK Unmodified 1747.8602 0.86015906 1287 Q8IXB1;Q8IXB1-2;F8W884 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 62.337 55.2 3;4 2.5011E-41 7 45077 20150910_Q1_SA_NiHu_Masterprac_group13_C 121.42 91.95 347510000 28152000 2870000 55153000 63061000 58991000 139280000 6394 1287 6299 27934;27935;27936;27937;27938;27939;27940;27941;27942;27943;27944 18461;18462;18463;18464;18465;18466;18467 18462 7 RNFWSVTHPAK Unmodified 1341.6942 0.69420335 1576 Q9P275;Q9P275-2;E9PEW0 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 94.028 84.878 3 0.0017244 2 62995 20150910_Q1_SA_NiHu_Masterprac_group15_C 83.182 54.899 6424500 0 0 0 0 2708400 3716100 6395 1576 6300 27945;27946 18468;18469 18469 2 RNLQQELETQNQK Unmodified 1627.8278 0.8277963 660 Q02241-2;H7BYN4;Q02241;B4E1K0 KIF23 Kinesin-like protein KIF23 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 1 1 1 1 1 79.675 72.041 3 1.8703E-155 4 49962 20150910_Q1_SA_NiHu_Masterprac_group15_B 163.45 145.24 33664000 4391900 8857600 5062000 2678400 4450800 8223600 6396 660 6301 27947;27948;27949;27950;27951;27952;27953 18470;18471;18472;18473 18470 4 RNNEETVMSAR Unmodified 1305.6095 0.60954702 526 F5H727;Q9H0G5 NSRP1 Nuclear speckle splicing regulatory protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 49.386 43.662 3 0.0026707 6 36308 20150910_Q1_SA_NiHu_Masterprac_group15_C 73.435 53.808 4826600 646230 681100 832430 386450 808150 1472300 6397 526 6302 27954;27955;27956;27957;27958;27959 18474;18475;18476;18477;18478;18479 18477 6 RNQSFCPTVNLDK Unmodified 1577.762 0.76202492 447 E9PJD9;P46776;E9PLL6 RPL27A 60S ribosomal protein L27a yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 107.09 98.543 2;3 0.0039065 7 67132 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.116 45.624 29544000 6008900 2708600 2172400 2753600 8506000 7394500 6398 447 6303 27960;27961;27962;27963;27964;27965;27966;27967;27968;27969 18480;18481;18482;18483;18484;18485;18486 18482 6 RNRASTAASSALGFSK Unmodified 1622.8489 0.84886609 779 O96028-5;O96028-3;O96028;H0Y9U6 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 1 79.44 72.805 3;4 0.015291 2 50621 20150910_Q1_SA_NiHu_Masterprac_group10_B 50.305 23.534 10030000 0 4492400 2724500 655330 358020 1799400 6399 779 6304 27970;27971;27972;27973;27974;27975 18487;18488 18488 2 RNREEEWDPEYTPK Unmodified 1847.8438 0.84384029 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 93.19 85.361 3 0.0065817 2 64849 20150910_Q1_SA_NiHu_Masterprac_group13_C 65.295 41.339 23308000 531490 2044600 3911400 3983300 5515200 7322200 6400 1639 6305 27976;27977;27978;27979;27980;27981 18489;18490 18489 2 RNRLAPAHVDEQVFLYENAR Unmodified 2397.2302 0.23017473 778 O96006 ZBED1 Zinc finger BED domain-containing protein 1 yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 130.6 119.12 4 0.0016582 2 81594 20150910_Q1_SA_NiHu_Masterprac_group13_C 51.225 41.711 22432000 0 0 8179600 0 0 14252000 6401 778 6306 27982;27983 18491;18492 18491 2 RNSQWVPTLPNSSHHLDAVPCSTTINRNR Unmodified 3356.6545 0.65448716 592 Q12824-2;Q12824;G5E975;C9JTA6 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 130.33 130.33 5 0.0012585 1 83340 20150910_Q1_SA_NiHu_Masterprac_group13_B 46.399 46.399 7469700 0 0 0 7469700 0 0 6402 592 6307 27984 18493 18493 1 RNTDVPESQQNFHRPVK Unmodified 2051.0297 0.029684005 1353 Q92576-2;Q92576;E7EVH3;E9PE34;B3KP41;D6R9X2 PHF3 PHD finger protein 3 yes no 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 63.932 56.971 4 0.0010677 5 45897 20150910_Q1_SA_NiHu_Masterprac_group15_C 73.758 56.193 16084000 1406900 2263700 2193600 1717800 3411600 5090400 6403 1353 6308 27985;27986;27987;27988;27989;27990 18494;18495;18496;18497;18498 18496 5 RNTNSVPETAPAAIPETK Unmodified 1894.9749 0.97485447 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 99.32 90.819 2;3 3.0508E-05 8 61386 20150910_Q1_SA_NiHu_Masterprac_group13_B 86.179 86.179 264840000 0 62199000 36278000 28460000 59659000 78243000 6404 352;968 6309 27991;27992;27993;27994;27995;27996;27997;27998;27999 18499;18500;18501;18502;18503;18504;18505;18506 18499 8 RNTNSVPETAPAAIPETKR Unmodified 2051.076 0.075965495 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 2 By matching By matching By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 89.403 81.691 3;4 0.01219 4 56077 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.825 29.488 18860000 2885100 4150900 3028700 1885200 2777900 4132000 6405 352;968 6310 28000;28001;28002;28003;28004;28005;28006;28007;28008;28009;28010;28011 18507;18508;18509;18510 18509 4 RNVESGEEELASK Unmodified 1446.6951 0.69505079 1392 Q96HS1-2;Q96HS1 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 58.227 51.734 3 3.0229E-74 6 42329 20150910_Q1_SA_NiHu_Masterprac_group15_C 137.8 104.86 5650200 874950 742200 717820 576890 1255500 1482900 6406 1392 6311 28012;28013;28014;28015;28016;28017 18511;18512;18513;18514;18515;18516 18513 6 RNVVVTAIRGK Unmodified 1211.7462 0.74623892 1066 Q12986 NFX1 Transcriptional repressor NF-X1 yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 64.866 60.015 3 0.029298 1 42352 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.695 40.842 4937000 0 892280 0 344920 739080 2960700 6407 1066 6312 28018;28019;28020;28021 18517 18517 1 RNYENFIGNAHYRPNDK Unmodified 2106.9984 0.99838388 740 O75362 ZNF217 Zinc finger protein 217 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 101.17 91.811 4 0.036394 1 62792 20150910_Q1_SA_NiHu_Masterprac_group15_B 35.492 28.167 5990500 568030 0 1155800 1249800 1262600 1754300 6408 740 6313 28022;28023;28024;28025;28026 18518 18518 1 RPAEDMEEEQAFK Unmodified 1578.6984 0.69842161 984 P61978-3;P61978-2;B4DFF1;P61978;Q5T6W5;Q5T6W2 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 85.717 78.062 2;3 8.9133E-75 12 60482 20150910_Q1_SA_NiHu_Masterprac_group13_C 141.37 111.19 52084000 4488200 8308900 8578300 3265400 9673100 17770000 6409 984 6314 28027;28028;28029;28030;28031;28032;28033;28034;28035;28036;28037;28038;28039 18519;18520;18521;18522;18523;18524;18525;18526;18527;18528;18529;18530 18521 11 RPAEDMEEEQAFKR Unmodified 1734.7995 0.79953264 984 P61978-3;P61978-2;B4DFF1;P61978;Q5T6W5;Q5T6W2 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 78.975 70.563 3 0.005522 1 48950 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.326 47.089 8776800 490700 0 1048500 747820 1867000 4622800 6410 984 6315 28040;28041;28042;28043;28044 18531 18531 1 RPLDDGVGNQLGALVHQR Unmodified 1944.029 0.028955723 1394 Q96I24;A6NJ37 FUBP3 Far upstream element-binding protein 3 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 131.92 131.62 3 0.0005806 1 84680 20150910_Q1_SA_NiHu_Masterprac_group10_B 78.848 67.162 10073000 0 7594700 0 2478200 0 0 6411 1394 6316 28045;28046 18532 18532 1 RPYAPINANAIK Unmodified 1326.7408 0.74081919 754 O94776;Q68DB1 MTA2;DKFZp686F2281 Metastasis-associated protein MTA2 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 1 2 99.491 90.926 2;3 3.7756E-18 4 61177 20150910_Q1_SA_NiHu_Masterprac_group10_B 118.23 78.503 70156000 0 14372000 9435700 0 706370 45642000 6412 754 6317 28047;28048;28049;28050;28051;28052;28053 18533;18534;18535;18536 18536 4 RQAHLCVLASNCDEPMYVK Unmodified 2290.0657 0.065676859 875 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 128.43 115.7 4 0.00016619 5 76189 20150910_Q1_SA_NiHu_Masterprac_group10_C 69.979 52.301 8285400 4695200 0 0 0 2538400 1051800 6413 875 6318 28054;28055;28056 18537;18538;18539;18540;18541 18540 5 RQALVEFENIDSAK Unmodified 1618.8315 0.83148469 236 Q8WVV9-4;C9J9G0;Q8WVV9;Q5JB52;B7WPG3;Q8WVV9-3;Q8WVV9-2;C9IYN3;H7BXH8;C9JJZ7 HNRNPLL;HNRPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 128.47 127.87 3 0.011594 2 81639 20150910_Q1_SA_NiHu_Masterprac_group10_B 44.252 44.252 11419000 0 11419000 0 0 0 0 6414 236 6319 28057;28058 18542;18543 18543 2 RQAVTNPNNTFYATK Unmodified 1723.8642 0.86418181 187 B7Z4V2;P38646;D6RJI2;D6RA73 HSPA9 Stress-70 protein, mitochondrial yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 84.375 76.797 3 2.3747E-56 5 59903 20150910_Q1_SA_NiHu_Masterprac_group13_C 128.85 105.85 24708000 2595500 4419800 5489500 2817300 2949900 6436100 6415 187 6320 28059;28060;28061;28062;28063;28064 18544;18545;18546;18547;18548 18545 5 RQCHMFTDQIK Unmodified 1462.6809 0.68093783 1096 Q14149 MORC3 MORC family CW-type zinc finger protein 3 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 75.816 70.765 3 0.0063658 1 54388 20150910_Q1_SA_NiHu_Masterprac_group15_C 62.166 31.277 4027900 0 773130 0 192250 939430 2123100 6416 1096 6321 28065;28066;28067;28068 18549 18549 1 RQDSDLVQCGVTSPSSAEATGK Unmodified 2292.0652 0.065202392 1519 Q9HC52 CBX8 Chromobox protein homolog 8 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 1 100.24 89.273 3 1.8559E-15 6 61136 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.06 80.226 24226000 0 3178500 4222800 0 9092900 7731500 6417 1519 6322 28069;28070;28071;28072;28073;28074 18550;18551;18552;18553;18554;18555 18551 6 RQKGTEGMEPEEGVTVESQPQVK Unmodified 2542.2333 0.23333035 706 O15446;O15446-2 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 2 2 1 96.359 88.294 3;4 3.2745E-08 6 65114 20150910_Q1_SA_NiHu_Masterprac_group15_C 66.467 55.913 23443000 3269700 2291700 3901500 5482500 5715600 2781600 6418 706 6323 28075;28076;28077;28078;28079;28080;28081;28082 18556;18557;18558;18559;18560;18561 18559 6 RQLEDGDQPESK Unmodified 1400.6532 0.65318598 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 1 32.933 27.954 2;3 8.091E-27 5 19697 20150910_Q1_SA_NiHu_Masterprac_group13_B 120.84 93.284 49866000 2005100 5791500 36184000 3444700 1182800 1258400 6419 1366 6324 28083;28084;28085;28086;28087;28088;28089;28090;28091;28092 18562;18563;18564;18565;18566 18562 5 RQLEDGDQPESKK Unmodified 1528.7481 0.74814899 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 24.539 21.238 3 0.0055691 4 14758 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.565 66.02 7442400 427030 1364100 3469900 717330 534970 929030 6420 1366 6325 28093;28094;28095;28096;28097;28098 18567;18568;18569;18570 18569 3 RQLQEDQENNLQDNQTSNSSPCR Unmodified 2760.2118 0.21176006 1353 Q92576-2;Q92576 PHF3 PHD finger protein 3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 72.46 63.511 3 0.014476 1 44342 20150910_Q1_SA_NiHu_Masterprac_group15_B 32.896 24.502 4721800 0 729310 1173900 0 1321300 1497300 6421 1353 6326 28099;28100;28101;28102 18571 18571 1 RQLQQLQEGTLQEYQK Unmodified 1989.028 0.02795267 1500 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 110.84 103.46 3 5.7212E-29 6 75356 20150910_Q1_SA_NiHu_Masterprac_group13_C 113.01 92.491 14635000 3498100 2777600 2996400 1088200 0 4274800 6422 1500 6327 28103;28104;28105;28106;28107 18572;18573;18574;18575;18576;18577 18574 6 RQNALLEQQVR Unmodified 1353.7477 0.74769548 981 P61244-2;P61244;G3V5L1;G3V570 MAX Protein max yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 77.645 70.91 3 3.2165E-07 4 54598 20150910_Q1_SA_NiHu_Masterprac_group15_C 107.03 80.914 2821200 0 579450 0 0 1082100 1159700 6423 981 6328 28108;28109;28110 18578;18579;18580;18581 18580 4 RQNLDEILQQHKLK Unmodified 1761.985 0.98496564 224 C9J7T7;C9JE98;C9J239;Q9Y618-5;C9J0Q5;Q9Y618-4;C9JJF6;C9JFD3;Q9Y618-3;Q9Y618;C9JQE8;C9JNV9 NCOR2 Nuclear receptor corepressor 2 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 113.51 106.54 4 0.0010194 1 73022 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.74 59.984 2174100 0 0 0 508960 239330 1425800 6424 224 6329 28111;28112;28113 18582 18582 1 RQQEEEAAAQMKEK Unmodified 1674.7995 0.79953264 1514 Q9HAU5-2;Q9HAU5 UPF2 Regulator of nonsense transcripts 2 yes no 0 0 2 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1 40.811 35.773 3 0.0034538 2 24449 20150910_Q1_SA_NiHu_Masterprac_group13_B 75.316 49.787 3550900 702650 385100 579950 738960 372070 772190 6425 1514 6330 28114;28115;28116;28117;28118;28119;28120 18583;18584 18583 2 RQQEGFKGTFPDAR Unmodified 1635.8118 0.8117523 1133 Q15233;F5GYZ3 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 2 2 2 2 2 84.803 77.156 3;4 0.0010621 8 60155 20150910_Q1_SA_NiHu_Masterprac_group13_C 78.401 46.52 49272000 12840000 9421900 8623600 4664800 7733800 5987100 6426 1133 6331 28121;28122;28123;28124;28125;28126;28127;28128;28129;28130;28131;28132;28133 18585;18586;18587;18588;18589;18590;18591;18592 18585 8 RQQEPLGEDCPSELR Unmodified 1812.8425 0.84246009 1314 Q8NB16;Q8NB16-2;I3L2U3 MLKL Mixed lineage kinase domain-like protein yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1 1 96.211 86.987 3 0.00043839 5 59564 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.324 65.949 11374000 1612300 3142300 1516000 680280 324110 4098800 6427 1314 6332 28134;28135;28136;28137;28138;28139;28140 18593;18594;18595;18596;18597 18595 4 RQQHQEEEDILDVR Unmodified 1793.8656 0.86563837 1191 Q5T3I0;Q5T3I0-3 GPATCH4 G patch domain-containing protein 4 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 97.607 89.966 3 0.00079324 4 60803 20150910_Q1_SA_NiHu_Masterprac_group10_B 68.751 68.751 5293600 0 1153300 803220 607920 929370 1799800 6428 1191 6333 28141;28142;28143;28144;28145 18598;18599;18600;18601 18600 4 RQQHQEEEDILDVRDEK Unmodified 2166.0301 0.030137515 1191 Q5T3I0;Q5T3I0-3 GPATCH4 G patch domain-containing protein 4 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 89.814 82.135 4 3.7446E-73 6 56224 20150910_Q1_SA_NiHu_Masterprac_group10_C 125.33 112.73 20018000 3031800 2534800 3853600 2685900 3304800 4607400 6429 1191 6334 28146;28147;28148;28149;28150;28151 18602;18603;18604;18605;18606;18607 18607 6 RQSNVAAPGDATPPAEK Unmodified 1707.854 0.85401105 1414 Q96QC0;F5H5K4 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 62.15 54.581 3 0.00075952 4 38870 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.422 56.501 10296000 3016000 0 2815900 1976200 445210 2042200 6430 1414 6335 28152;28153;28154;28155;28156;28157 18608;18609;18610;18611 18610 4 RQTFITLEK Unmodified 1134.6397 0.63970816 1201 Q5UIP0-2;Q5UIP0 RIF1 Telomere-associated protein RIF1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 104.99 95.135 2 0.030976 1 64873 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.775 39.343 9981000 0 0 0 0 2772500 7208400 6431 1201 6336 28158;28159 18612 18612 1 RQTLRLCEDQNGNPYVK Unmodified 2090.0327 0.032720472 767 O95235;B4DL79 KIF20A Kinesin-like protein KIF20A yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 98.659 92.108 4 0.014775 1 62945 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.624 27.005 3346500 0 0 1227300 608870 0 1510400 6432 767 6337 28160;28161;28162 18613 18613 1 RQYENHIFVGSK Unmodified 1476.7474 0.74736113 1523 Q9NP92 MRPS30 28S ribosomal protein S30, mitochondrial yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 74.65 65.6 3 0.0018612 1 45702 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.03 48.794 5042300 0 729670 850280 0 921890 2540500 6433 1523 6338 28163;28164;28165;28166 18614 18614 1 RRAADALEEQQR Unmodified 1441.7386 0.73858736 1121 Q14980-2;Q14980;F5H4J1 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 37.175 35.644 3 0.011481 1 24944 20150910_Q1_SA_NiHu_Masterprac_group10_B 68.515 47.477 3328500 0 1897800 0 0 0 1430600 6434 1121 6339 28167;28168 18615 18615 1 RRALAAPAAEEK Unmodified 1281.7153 0.71533272 1028 Q01650 SLC7A5 Large neutral amino acids transporter small subunit 1 yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 40.365 36.069 3 1.083E-06 2 29201 20150910_Q1_SA_NiHu_Masterprac_group13_C 102.4 52.047 9203700 0 3319400 5497000 387270 0 0 6435 1028 6340 28169;28170;28171 18616;18617 18616 2 RRDISSSLNSLADSNAR Unmodified 1860.9402 0.9402003 754 O94776 MTA2 Metastasis-associated protein MTA2 yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 1 2 106.07 97.201 3;4 8.049E-13 6 66226 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.129 66.798 68992000 0 11348000 8735000 0 1439400 47470000 6436 754 6341 28172;28173;28174;28175;28176;28177;28178 18618;18619;18620;18621;18622;18623 18621 6 RRELLDQLQQK Unmodified 1425.8052 0.80521036 1493 Q9H5Q4 TFB2M Dimethyladenosine transferase 2, mitochondrial yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 92.163 82.852 3 0.025083 1 56675 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.704 28.9 7108600 0 525310 1184200 0 803090 4596000 6437 1493 6342 28179;28180;28181;28182 18624 18624 1 RRFAIGSQVSEHSIIK Unmodified 1827.0115 0.011514745 892 P33992;B1AHB1 MCM5 DNA replication licensing factor MCM5 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 109.45 102.4 4 0.039696 1 74959 20150910_Q1_SA_NiHu_Masterprac_group13_C 35.836 8.5736 8020700 0 0 937840 365840 0 6717000 6438 892 6343 28183;28184;28185 18625 18625 1 RRLDDQESPVYAAQQR Unmodified 1930.9609 0.96093574 1420 Q96ST3;H3BMA2;H3BT34;H3BQ76;H3BQ88;H3BNA0;H3BNZ3;H3BQL7;H3BP90 SIN3A Paired amphipathic helix protein Sin3a yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 77.061 71.366 4 0.020418 1 49636 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.278 24.434 6212900 874790 1050500 0 397540 1348900 2541100 6439 1420 6344 28186;28187;28188;28189;28190 18626 18626 1 RRLQELAELEAK Unmodified 1454.8205 0.82052608 37 A8MPX7;F5GWL7;Q9H5V9 CXorf56 UPF0428 protein CXorf56 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 104.86 98.428 3 0.01156 1 72358 20150910_Q1_SA_NiHu_Masterprac_group13_C 68.355 27.114 6506300 0 1721300 2809400 1975600 0 0 6440 37 6345 28191;28192;28193 18627 18627 1 RRNETSFLPAK Unmodified 1317.7153 0.71533272 565 F8WAJ0;Q9H8H2;Q9H8H2-2;B4E3G7;Q9H8H2-3;Q9H8H2-4 DDX31 Probable ATP-dependent RNA helicase DDX31 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 71.683 63.486 3 0.0088678 1 51219 20150910_Q1_SA_NiHu_Masterprac_group13_C 85.533 53.204 13245000 0 0 2831900 2904000 7293600 215320 6441 565 6346 28194;28195;28196;28197 18628 18628 1 RRQTNNQNWGSQPIAQQPLQGGDHSGNYGYK Unmodified 3498.6526 0.65257291 731 O60506-2;O60506 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 105.71 102.25 5 0.025526 1 69870 20150910_Q1_SA_NiHu_Masterprac_group15_B 28.327 22.25 2825500 0 0 0 0 0 2825500 6442 731 6347 28198 18629 18629 0 RRSGASEANLIVAK Unmodified 1470.8267 0.82667409 919;920 P46013;F5H4V4;P46013-2;E7EN66 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 1 1 66.759 59.483 3 2.4788E-19 5 42584 20150910_Q1_SA_NiHu_Masterprac_group10_B 107.17 70.022 148130000 22033000 14122000 26918000 9419000 608850 75029000 6443 919;920 6348 28199;28200;28201;28202;28203;28204;28205 18630;18631;18632;18633;18634 18632 5 RRSPPADAIPK Unmodified 1206.6833 0.68330431 271 C9JW69;P18754;P18754-2;C9JRH2;C9JMJ4;C9J3R0;C9JQZ4 RCC1 Regulator of chromosome condensation yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 49.257 43.662 3 0.039465 1 31145 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.765 27.072 7223000 0 1265700 1401800 834080 1533000 2188500 6444 271 6349 28206;28207;28208;28209;28210 18635 18635 1 RRSSTVAPAQPDGAESEWTDVETR Unmodified 2644.2477 0.24773486 660 Q02241-2;H7BYN4;Q02241;B4E1K0 KIF23 Kinesin-like protein KIF23 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 108.12 106.61 4 0.0019901 1 70233 20150910_Q1_SA_NiHu_Masterprac_group10_B 50.202 40.221 1335100 0 1335100 0 0 0 0 6445 660 6350 28211 18636 18636 1 RRTTQIINITMTK Unmodified 1574.8926 0.89264516 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;Q9BTE9 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 110.08 100.48 3 0.0039985 1 68360 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.357 56.078 7216900 0 0 2169300 730230 1600500 2716900 6446 1121 6351 28212;28213;28214;28215 18637 18637 1 RRVVIVDPETNK Unmodified 1424.81 0.80996139 840 P15924;P15924-2 DSP Desmoplakin yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 70.479 63.727 3 0.028641 1 44696 20150910_Q1_SA_NiHu_Masterprac_group10_B 74.962 44.756 3197800 0 1402700 878700 0 0 916370 6447 840 6352 28216;28217;28218 18638 18638 0 RSAPGGGSKVPQK Unmodified 1267.6997 0.69968266 801 P06748-2;P06748;P06748-3;E5RI98 NPM1 Nucleophosmin yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 19.886 17.499 3 8.8912E-15 5 11001 20150910_Q1_SA_NiHu_Masterprac_group10_C 107.93 66.685 23434000 3972300 10557000 0 2152500 3362300 3389300 6448 801 6353 28219;28220;28221;28222;28223 18639;18640;18641;18642;18643 18643 5 RSAVETQANNLICR Unmodified 1630.8209 0.82093678 740 O75362 ZNF217 Zinc finger protein 217 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 102.35 94.239 3 0.0012102 4 64339 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.244 37.596 6426000 1007200 1031100 982880 0 0 3405000 6449 740 6354 28224;28225;28226;28227 18644;18645;18646;18647 18645 4 RSDDMFTFHGPGK Unmodified 1493.6721 0.67214728 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 2 1 112.65 103.05 3 0.00078797 2 70324 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.282 52.759 6866800 0 791090 1033300 766320 1931500 2344600 6450 945 6355 28228;28229;28230;28231;28232;28233 18648;18649 18648 1 RSDGPPAACDAHQCDDAETILLK Unmodified 2539.1431 0.14313514 728 O60287 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 120.4 115.74 4 0.0016057 1 78914 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.597 36.934 1083900 0 0 0 0 0 1083900 6451 728 6356 28234 18650 18650 1 RSDHLINTESEAVNLSK Unmodified 1911.965 0.96501806 1232 Q6PJP8 DCLRE1A DNA cross-link repair 1A protein yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 111.29 96.755 3 0.0023144 1 71472 20150910_Q1_SA_NiHu_Masterprac_group13_C 47.942 29.364 3467400 2357700 0 1109700 0 0 0 6452 1232 6357 28235;28236 18651 18651 1 RSEACPCQPDSGSPLPAEEEK Unmodified 2343.0107 0.01072398 1098 Q14160-2;Q14160;Q14160-3 SCRIB Protein scribble homolog yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 87.946 80.96 3 0.0025088 1 55547 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.423 38.479 2681100 0 742720 572090 0 0 1366300 6453 1098 6358 28237;28238;28239 18652 18652 1 RSEAEEAITSFNGHKPPGSSEPITVK Unmodified 2767.3777 0.3776864 1146 Q15717 ELAVL1 ELAV-like protein 1 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 2 129.58 120.89 4;5 1.9822E-117 10 81026 20150910_Q1_SA_NiHu_Masterprac_group13_C 130.57 111.22 748440000 149480000 57793000 196960000 25195000 34217000 284790000 6454 1146 6359 28240;28241;28242;28243;28244;28245;28246;28247;28248 18653;18654;18655;18656;18657;18658;18659;18660;18661;18662 18655 10 RSEIPCYWENQPTGCQK Unmodified 2151.9466 0.94660758 97 B4DLG2;O75152;E9PQ61;E9PBY7 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 122.84 113.34 3 1.6926E-58 6 80597 20150910_Q1_SA_NiHu_Masterprac_group13_C 122.5 111.96 37135000 11925000 2639900 8833700 2493200 7774700 3468300 6455 97 6360 28249;28250;28251;28252;28253;28254 18663;18664;18665;18666;18667;18668 18664 5 RSELSQDAEPAGSQETK Unmodified 1831.8548 0.85479891 425 E9PEL7;Q9BVJ6;Q9BVJ6-2;F8WD00 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 55.166 48.298 3 0.0028077 1 39701 20150910_Q1_SA_NiHu_Masterprac_group13_C 46.877 34.36 3603000 0 0 803450 500620 829120 1469800 6456 425 6361 28255;28256;28257;28258 18669 18669 1 RSEVSEEVTENGTEEAAK Unmodified 1963.8971 0.89705766 1164 Q3B726 TWISTNB DNA-directed RNA polymerase I subunit RPA43 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 65.427 64.272 3 0.00088879 1 44916 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.916 47.643 1853700 0 0 0 0 0 1853700 6457 1164 6362 28259 18670 18670 1 RSEVVESTTESQDKENSHQK Unmodified 2317.0782 0.078209919 1201 Q5UIP0-2;Q5UIP0 RIF1 Telomere-associated protein RIF1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 32.739 28.485 4 0.00097731 1 20108 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.327 53.327 9253300 1370600 1567700 1501600 1897400 823990 2092100 6458 1201 6363 28260;28261;28262;28263;28264;28265 18671 18671 1 RSGASEANLIVAK Unmodified 1314.7256 0.72556306 919;920 P46013;F5H4V4;P46013-2;E7EN66 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 2 1 1 80.056 73.088 3 0.0088568 4 57675 20150910_Q1_SA_NiHu_Masterprac_group13_C 71.933 31.997 3016100 515820 852540 885700 762040 0 0 6459 919;920 6364 28266;28267;28268;28269;28270;28271 18672;18673;18674;18675 18672 4 RSGGGGGRFSSCGGGGGSFGAGGGFGSR Unmodified 2449.069 0.068999412 789 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 2 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 97.784 88.761 4 0.00020781 2 66965 20150910_Q1_SA_NiHu_Masterprac_group13_C 42.416 39.992 11186000 0 0 3775800 3946900 1068700 2394500 + 6460 789 6365 28272;28273;28274;28275 18676;18677 18677 2 RSHDFSNSENLEK Unmodified 1561.7121 0.71209784 1480 Q9H0J9;G5E9U9 PARP12 Poly [ADP-ribose] polymerase 12 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 51.486 45.67 3 0.00097522 2 32151 20150910_Q1_SA_NiHu_Masterprac_group13_B 82.202 46.608 8339500 0 1528400 1619700 1635300 1436900 2119300 6461 1480 6366 28276;28277;28278;28279;28280 18678;18679 18678 2 RSHQLIHAASLK Unmodified 1359.7735 0.7735163 1390 Q96H79 ZC3HAV1L Zinc finger CCCH-type antiviral protein 1-like yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 58.73 51.486 3 0.0023505 4 41740 20150910_Q1_SA_NiHu_Masterprac_group15_C 64.945 37.517 6539800 0 0 2177100 570870 2071900 1720000 6462 1390 6367 28281;28282;28283;28284 18680;18681;18682;18683 18683 4 RSIADSEESEAYK Unmodified 1483.6791 0.67906638 38 Q9BY42;A8MSH5 RTFDC1 Protein RTF2 homolog yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 64.711 57.627 2;3 1.6504E-24 10 42600 20150910_Q1_SA_NiHu_Masterprac_group10_C 116.79 80.786 100460000 17098000 17132000 18490000 10664000 13670000 23410000 6463 38 6368 28285;28286;28287;28288;28289;28290;28291;28292;28293;28294;28295;28296;28297 18684;18685;18686;18687;18688;18689;18690;18691;18692;18693 18693 10 RSIADSEESEAYKSLFTTHSSAK Unmodified 2543.214 0.21397512 38 Q9BY42;A8MSH5 RTFDC1 Protein RTF2 homolog yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 131.35 113.36 4 3.4764E-22 1 82081 20150910_Q1_SA_NiHu_Masterprac_group13_C 89.622 65.214 15845000 0 0 15845000 0 0 0 6464 38 6369 28298 18694 18694 0 RSIFASPESVTGK Unmodified 1377.7252 0.72522871 751 O75940 SMNDC1 Survival of motor neuron-related-splicing factor 30 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 3 110.31 101.87 2;3 2.6308E-09 9 67389 20150910_Q1_SA_NiHu_Masterprac_group13_B 101.75 69.315 137660000 12134000 17552000 14373000 16358000 23839000 53407000 6465 751 6370 28299;28300;28301;28302;28303;28304;28305;28306;28307;28308;28309;28310;28311;28312;28313 18695;18696;18697;18698;18699;18700;18701;18702;18703 18696 9 RSIGASPNPFSVHTATAVPSGK Unmodified 2180.1338 0.13381473 30 P09884;A6NMQ1 POLA1 DNA polymerase alpha catalytic subunit;DNA polymerase yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 114.86 114.46 4 0.0047892 1 74332 20150910_Q1_SA_NiHu_Masterprac_group10_B 43.328 30.948 1164100 0 705500 0 458650 0 0 6466 30 6371 28314;28315 18704 18704 0 RSLDPADERDDVLAK Unmodified 1698.8537 0.8536767 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 2 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 2 1 95.714 86.597 3 0.0022889 3 58531 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.589 54.317 55478000 2135700 6518300 13831000 1019400 3762400 28211000 6467 1344 6372 28316;28317;28318;28319;28320;28321;28322 18705;18706;18707 18707 3 RSLEVWGSQEALEEAK Unmodified 1830.9112 0.91119158 475 F2Z2T2;P23025 XPA DNA repair protein complementing XP-A cells yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 131.55 131.55 3 4.707E-27 1 84534 20150910_Q1_SA_NiHu_Masterprac_group13_B 109.67 76.953 3000000 0 0 0 3000000 0 0 6468 475 6373 28323 18708 18708 1 RSLGEPAAGEGSAK Unmodified 1328.6684 0.66844211 1450 Q9BUL9 RPP25 Ribonuclease P protein subunit p25 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 43.679 38.44 2 0.019603 1 31200 20150910_Q1_SA_NiHu_Masterprac_group13_C 58.461 9.9293 5639000 680930 903380 1710400 504460 567750 1272100 6469 1450 6374 28324;28325;28326;28327;28328;28329 18709 18709 1 RSLKQPLEQNQTISPLSTYEESK Unmodified 2675.3766 0.37662377 1626 Q9UQR1;F5H173 ZNF148 Zinc finger protein 148 yes no 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 130.6 118.69 4 4.4839E-08 2 82956 20150910_Q1_SA_NiHu_Masterprac_group13_B 65.111 50.919 34053000 0 0 19044000 10205000 4803700 0 6470 1626 6375 28330;28331;28332 18710;18711 18710 2 RSLRPDPNFDALISK Unmodified 1727.9319 0.93186744 1424;1043 Q99496;Q06587-2;Q06587 RNF2;RING1 E3 ubiquitin-protein ligase RING2;E3 ubiquitin-protein ligase RING1 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 2 131.79 120.45 3;4 1.6229E-08 10 77982 20150910_Q1_SA_NiHu_Masterprac_group10_C 100.11 60.15 172360000 30975000 5757500 32308000 5175100 12646000 85499000 6471 1424;1043 6376 28333;28334;28335;28336;28337;28338;28339;28340;28341;28342 18712;18713;18714;18715;18716;18717;18718;18719;18720;18721 18720 10 RSLTVSDDAESSEPERK Unmodified 1904.9076 0.90756276 1325 Q8NFC6;H0Y9Y2 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 62.078 55.26 3 0.00073751 7 45182 20150910_Q1_SA_NiHu_Masterprac_group13_C 71.286 59.385 12667000 1422300 2590500 2476000 1646100 1764900 2766800 6472 1325 6377 28343;28344;28345;28346;28347;28348 18722;18723;18724;18725;18726;18727;18728 18724 7 RSMGGAAIAPPTSLVEK Unmodified 1683.8978 0.89779012 1395 Q96I25;H0Y6J6;Q5W012;Q5W011;Q5W010 RBM17 Splicing factor 45 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 129.95 118.55 3 0.00075952 3 84738 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.422 47.51 37373000 6779800 1716500 10667000 0 3541600 14668000 6473 1395 6378 28349;28350;28351;28352;28353 18729;18730;18731 18729 3 RSMQQLDPSPARK Unmodified 1512.7831 0.78309471 1488 Q9H410;B4DWT2;Q5JW54;Q9H410-2;Q9H410-3 DSN1 Kinetochore-associated protein DSN1 homolog yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 55.094 49.037 3 0.03827 1 34547 20150910_Q1_SA_NiHu_Masterprac_group13_B 53.3 31.947 8497600 0 1095200 1767200 1588000 1872300 2174900 6474 1488 6379 28354;28355;28356;28357;28358 18732 18732 1 RSNVLTGLQDSSTDNRAK Unmodified 1960.9926 0.9926298 687 O00257;O00257-3 CBX4 E3 SUMO-protein ligase CBX4 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 81.624 75.744 3 3.4948E-13 3 52308 20150910_Q1_SA_NiHu_Masterprac_group10_C 96.143 81.867 15259000 2492900 1750100 3364000 3554500 0 4097300 6475 687 6380 28359;28360;28361;28362;28363 18733;18734;18735 18735 3 RSNVRWDHESVCK Unmodified 1671.79 0.78997101 766 O95232;F5H1W9;H7C5U7;O95232-2;C9JL41 LUC7L3 Luc7-like protein 3 yes no 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 53.583 47.563 3;4 0.0019992 5 33991 20150910_Q1_SA_NiHu_Masterprac_group13_B 66.326 50.94 66252000 3253700 4080500 14568000 11760000 19572000 13017000 6476 766 6381 28364;28365;28366;28367;28368;28369;28370;28371;28372;28373;28374 18736;18737;18738;18739;18740 18736 5 RSPCNLAIPSEVDVEK Unmodified 1812.904 0.90399771 367 Q8NEM7-2;F5GX46;Q8NEM7;E7ER46 SUPT20H Transcription factor SPT20 homolog yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 130.45 122.61 3 1.8976E-06 2 77406 20150910_Q1_SA_NiHu_Masterprac_group10_C 79.837 41.609 10301000 8252300 0 0 2048500 0 0 6477 367 6382 28375;28376 18741;18742 18742 1 RSPHFFQPTNQQFK Unmodified 1760.8747 0.87468691 1386 Q96FV9 THOC1 THO complex subunit 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 103.18 95.911 3 0.014123 1 65633 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.242 13.515 3582400 0 385500 0 0 996590 2200300 6478 1386 6383 28377;28378;28379 18743 18743 1 RSPSAPAATSSASSSTSSYK Unmodified 1928.9076 0.90756276 424 E9PE58;Q15345-3;Q15345 LRRC41 Leucine-rich repeat-containing protein 41 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 57.924 51.398 3 5.5708E-18 7 42657 20150910_Q1_SA_NiHu_Masterprac_group13_C 97.271 85.772 16685000 870570 3827400 4139600 1018400 1306600 5522500 6479 424 6384 28380;28381;28382;28383;28384;28385;28386 18744;18745;18746;18747;18748;18749;18750 18744 6 RSQANGAGALSYVSPNTSKCPVTIPEDQK Unmodified 3074.5091 0.50911128 772 O95453-2;O95453-3;O95453;F5H1Z4 PARN Poly(A)-specific ribonuclease PARN yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 130.47 124.58 4 8.3324E-13 4 83129 20150910_Q1_SA_NiHu_Masterprac_group13_B 63.932 51.484 33399000 0 9856400 10549000 4228000 0 8765700 6480 772 6385 28387;28388;28389;28390 18751;18752;18753;18754 18751 4 RSQEDEISSPVNK Unmodified 1487.7216 0.72159989 1201 Q5UIP0-2;Q5UIP0;H7C2B5 RIF1 Telomere-associated protein RIF1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 63.808 56.747 3 0.00067409 6 40277 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.529 54.457 18858000 2107500 3567900 4447000 1725600 2522200 4487400 6481 1201 6386 28391;28392;28393;28394;28395;28396;28397 18755;18756;18757;18758;18759;18760 18757 6 RSQEDEISSPVNKVR Unmodified 1742.8911 0.89112484 1201 Q5UIP0-2;Q5UIP0;H7C2B5 RIF1 Telomere-associated protein RIF1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 75.781 68.319 3 0.0076027 2 47412 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.884 42.255 7179600 1014500 1275400 2210700 858620 599910 1220400 6482 1201 6387 28398;28399;28400;28401;28402;28403 18761;18762 18762 2 RSQPEPGVADEDQTA Unmodified 1598.7172 0.7172428 1450 Q9BUL9 RPP25 Ribonuclease P protein subunit p25 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 63.742 57.408 2 0.034979 1 45911 20150910_Q1_SA_NiHu_Masterprac_group15_C 50.305 42.773 20176000 0 6571300 0 0 5692700 7912500 6483 1450 6388 28404;28405;28406 18763 18763 1 RSQSHLPYFTPKPPQDSAVIK Unmodified 2395.2648 0.2648289 1516 Q9HB21;Q9HB21-2;Q5RGS4 PLEKHA1 Pleckstrin homology domain-containing family A member 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 127.22 124.74 4 0.0040042 1 84444 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.844 25.248 4727900 0 0 0 1014600 0 3713300 6484 1516 6389 28407;28408 18764 18764 1 RSREDAGDNDDTEGAIGVR Unmodified 2031.9206 0.92058707 1481 Q9H0S4;G5E955 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 1 1 62.768 56.125 3;4 1.1194E-25 9 46023 20150910_Q1_SA_NiHu_Masterprac_group13_C 101.78 89.882 27160000 4313900 4981800 6460600 3330600 357090 7715500 6485 1481 6390 28409;28410;28411;28412;28413;28414;28415;28416;28417;28418 18765;18766;18767;18768;18769;18770;18771;18772;18773 18767 9 RSRVEEPSGAVTTPAGVIAAAGPQGPGTGE Unmodified 2818.4209 0.4209482 1017 P85037;P85037-2;I3L0E1 FOXK1 Forkhead box protein K1 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 132.25 124.39 3 4.7534E-111 3 84783 20150910_Q1_SA_NiHu_Masterprac_group10_B 121.97 108.64 75412000 0 31767000 34030000 0 0 9615500 6486 1017 6391 28419;28420;28421 18774;18775;18776 18776 3 RSSGFISELPSEEGK Unmodified 1621.7948 0.79476484 1212 Q5VZK9-2;Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 121.39 113.55 3 0.0011404 1 74983 20150910_Q1_SA_NiHu_Masterprac_group10_C 66.826 52.395 2795800 1736700 0 0 1059100 0 0 6487 1212 6392 28422;28423 18777 18777 1 RSSGKGNSSDHEGCWNEESWTFSQSGTSGSK Unmodified 3375.4083 0.40828762 238 C9JA69;Q8WY36-2;Q8WY36 BBX HMG box transcription factor BBX yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 124.86 106.87 4 0.013719 1 77419 20150910_Q1_SA_NiHu_Masterprac_group13_C 27.208 26.851 1207400 0 0 1207400 0 0 0 6488 238 6393 28424 18778 18778 1 RSSNPPARSQSSDTEQQSPTSGGGK Unmodified 2545.1753 0.1752982 121 B4DS13;E7EPC9;P23588;E7EX17 EIF4B Eukaryotic translation initiation factor 4B yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 28.399 26.895 4 0.0047334 1 18728 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.223 32.125 1493800 398870 0 0 593660 0 501310 6489 121 6394 28425;28426;28427 18779 18779 1 RSTRIPGTDAQAQAEDMNVK Unmodified 2187.0702 0.07022819 1231 Q6PJG2;F6RU81 ELMSAN1 ELM2 and SANT domain-containing protein 1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 96.027 86.993 4 0.0021287 2 59574 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.773 31.878 6240400 788330 0 821350 828500 1185900 2616300 6490 1231 6395 28428;28429;28430;28431;28432 18780;18781 18781 2 RSTSSFSCLSR Unmodified 1286.6037 0.60373336 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 70.425 63.097 3 3.8865E-21 6 50815 20150910_Q1_SA_NiHu_Masterprac_group13_C 124.38 87.05 45130000 3364600 6557800 10577000 7740400 5984000 10905000 + 6491 302 6396 28433;28434;28435;28436;28437;28438 18782;18783;18784;18785;18786;18787 18783 5 RSTSSFSCLSRHGGGGGGFGGGGFGSR Unmodified 2588.1687 0.16871346 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 112.3 100.55 4 0.035815 1 73714 20150910_Q1_SA_NiHu_Masterprac_group13_C 27.09 22.021 7922000 0 0 3253200 3389000 1279800 0 + 6492 302 6397 28439;28440;28441 18788 18788 1 RSTYNYSLPITVK Unmodified 1540.8249 0.82494275 657 Q5T7U1;Q9Y5Q8-2;H7BY84;Q9Y5Q8;Q9Y5Q8-3;H0Y5D2;H0Y3Y0;C9J393;H9KV68 GTF3C5 General transcription factor 3C polypeptide 5 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 132.03 126.14 2;3 2.9019E-09 5 84790 20150910_Q1_SA_NiHu_Masterprac_group13_B 101.2 81.079 74355000 0 37347000 17873000 7944200 0 11191000 6493 657 6398 28442;28443;28444;28445;28446 18789;18790;18791;18792;18793 18789 4 RSTYNYSLPITVKK Unmodified 1668.9199 0.91990577 657 Q5T7U1;Q9Y5Q8-2;H7BY84;Q9Y5Q8;Q9Y5Q8-3;H0Y5D2;H0Y3Y0;C9J393;H9KV68 GTF3C5 General transcription factor 3C polypeptide 5 yes no 0 0 2 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 125.02 112.21 3 1.6622E-07 2 80242 20150910_Q1_SA_NiHu_Masterprac_group13_C 99.069 81.816 28268000 6105400 0 17669000 3494600 998910 0 6494 657 6399 28447;28448;28449;28450 18794;18795 18795 2 RSVENQESVEIINDLK Unmodified 1871.9589 0.95887005 1345 Q8WYP5;Q8WYP5-3;Q8WYP5-2 AHCTF1 Protein ELYS yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.15 131.54 3 6.4038E-143 1 84988 20150910_Q1_SA_NiHu_Masterprac_group10_B 156.29 109.42 7580200 0 7580200 0 0 0 0 6495 1345 6400 28451 18796 18796 0 RSVNVNAASGGVQNSGIVR Unmodified 1883.9926 0.99257022 585 Q8NHV4-2;Q8NHV4;G3V3F1 NEDD1 Protein NEDD1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 96.104 88.175 3 2.3877E-17 6 60412 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.988 75.464 8765700 1753600 1641300 886460 789600 1539900 2154900 6496 585 6401 28452;28453;28454;28455;28456;28457 18797;18798;18799;18800;18801;18802 18799 5 RSYEQHNGVDGNMK Unmodified 1633.7267 0.72670205 1078 Q13330;Q13330-3;E7EN71;H0Y4T7;F8W9Y9 MTA1 Metastasis-associated protein MTA1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 38.425 34.112 3 0.00066006 2 23811 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.639 64.301 3366600 0 626280 1876500 0 0 863820 6497 1078 6402 28458;28459;28460 18803;18804 18803 2 RSYEQHNGVDGNMKK Unmodified 1761.8217 0.82166506 1078 Q13330;Q13330-3;E7EN71;H0Y4T7;F8W9Y9 MTA1 Metastasis-associated protein MTA1 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 28.807 27.627 4 0.0021705 1 19434 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.709 44.514 2157900 0 1487900 0 0 0 669910 6498 1078 6403 28461;28462 18805 18805 1 RSYESVEGNIK Unmodified 1280.6361 0.63607935 390 E7EVK1;O75376;O75376-2 NCOR1 Nuclear receptor corepressor 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 63.76 61.677 2 0.016628 2 43238 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.045 40.327 980610 0 293840 0 0 0 686770 6499 390 6404 28463;28464 18806;18807 18806 2 RTAAENDFVTLK Unmodified 1363.7096 0.70957864 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 105.66 96.131 3 8.5942E-06 2 64291 20150910_Q1_SA_NiHu_Masterprac_group10_B 100.73 74.616 5415000 0 4127400 0 0 1287600 0 + 6500 302 6405 28465;28466;28467 18808;18809 18809 2 RTAAENDFVTLKK Unmodified 1491.8045 0.80454166 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 87.356 77.655 3 0.0057365 2 53213 20150910_Q1_SA_NiHu_Masterprac_group10_B 81.904 58.087 11203000 0 5101000 6102200 0 0 0 + 6501 302 6406 28468;28469 18810;18811 18811 2 RTAAENEFVTLK Unmodified 1377.7252 0.72522871 287;788 P02538;CON__P02538;E7EUE8;CON__P50446;P04259;CON__P04259 KRT6A;KRT6B Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B no no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 108.15 98.002 3 0.013171 1 70658 20150910_Q1_SA_NiHu_Masterprac_group15_C 82.069 46.069 1085100 0 0 0 0 701230 383910 + 6502 287;788 6407 28470;28471 18812 18812 0 RTAAENEFVTLKK Unmodified 1505.8202 0.82019173 287;788 P02538;CON__P02538;E7EUE8;CON__P50446;P04259;CON__P04259 KRT6A;KRT6B Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B no no 0 0 2 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 92.088 80.14 3 0.020701 2 60148 20150910_Q1_SA_NiHu_Masterprac_group15_C 70.373 49.566 4452000 0 1107700 791400 0 2552800 0 + 6503 287;788 6408 28472;28473;28474 18813;18814 18813 1 RTAEQSCDQKLTNTNR Unmodified 1920.9072 0.90718561 175 B5ME40;F5GXG0;Q96T88 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 36.085 31.348 3 0.014474 1 25263 20150910_Q1_SA_NiHu_Masterprac_group13_C 50.831 35.557 1074300 0 0 850190 224100 0 0 6504 175 6409 28475;28476 18815 18815 1 RTAEVPVSEASGQAPPAK Unmodified 1793.9272 0.92717599 553 F8W689;P48382;B7Z848 RFX5 DNA-binding protein RFX5 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 2 1 1 2 79.054 71.543 3 0.00084752 5 50988 20150910_Q1_SA_NiHu_Masterprac_group10_C 61.477 42.776 5746000 802680 793070 915550 820290 788440 1625900 6505 553 6410 28477;28478;28479;28480;28481;28482;28483;28484 18816;18817;18818;18819;18820 18820 4 RTAITTPNFK Unmodified 1147.635 0.63495714 1463;1464 Q9BXS6-2;Q9BXS6-3;Q9BXS6;E7ERR5;Q9BXS6-5;E9PB35;H0YMD2;Q9BXS6-4 NUSAP1 Nucleolar and spindle-associated protein 1 no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 90.502 82.79 2 0.0224 1 56993 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.789 21.599 18288000 1616100 3249300 5655500 1505400 1657700 4604200 6506 1463;1464 6411 28485;28486;28487;28488;28489;28490 18821 18821 1 RTAITTPNFKK Unmodified 1275.7299 0.72992016 1463;1464 Q9BXS6-2;Q9BXS6-3;Q9BXS6;E7ERR5;Q9BXS6-5;E9PB35;H0YMD2;Q9BXS6-4 NUSAP1 Nucleolar and spindle-associated protein 1 no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 74.574 66.277 3 0.012121 2 46175 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.014 26.263 8414900 0 0 3468900 163550 1480900 3301500 6507 1463;1464 6412 28491;28492;28493;28494 18822;18823 18823 2 RTALHGESNSVLIIGPR Unmodified 1819.0064 0.006429367 725 O43929;C9JGH7;C9J2X8;Q53SE3 ORC4;ORC4L Origin recognition complex subunit 4 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 119.35 108.85 3 0.028309 1 74557 20150910_Q1_SA_NiHu_Masterprac_group15_B 33.667 25.066 2085600 0 0 0 0 938200 1147400 6508 725 6413 28495;28496 18824 18824 1 RTALHGESNSVLIIGPRGSGK Unmodified 2148.1763 0.17634824 725 O43929;C9JGH7;C9J2X8;Q53SE3 ORC4;ORC4L Origin recognition complex subunit 4 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 99.948 92.288 4 0.039232 1 62929 20150910_Q1_SA_NiHu_Masterprac_group15_B 31.389 17.406 10162000 0 1744300 2202900 1347300 1985100 2882100 6509 725 6414 28497;28498;28499;28500;28501 18825 18825 1 RTAPEDFLGKGPTK Unmodified 1515.8045 0.80454166 1386 Q96FV9 THOC1 THO complex subunit 1 yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 95.302 86.705 3 0.0095466 1 58823 20150910_Q1_SA_NiHu_Masterprac_group13_B 60.968 43.397 3281600 0 0 1938500 1343200 0 0 6510 1386 6415 28502;28503 18826 18826 1 RTAQEVETYRR Unmodified 1407.7219 0.72187466 853 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 0 0 2 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 40.254 36.323 3 0.012916 2 26076 20150910_Q1_SA_NiHu_Masterprac_group10_C 78.548 53.422 56374000 5670900 20216000 0 4474200 8019400 17993000 6511 853 6416 28504;28505;28506;28507;28508 18827;18828 18828 2 RTEALEQGGLPK Unmodified 1297.699 0.69901396 317 D6R9G1;D6RAD4;P50613 CDK7 Cyclin-dependent kinase 7 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 76.244 69.877 3 0.0012001 4 48742 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.088 37.76 6485100 733640 0 0 1224900 2329700 2196900 6512 317 6417 28509;28510;28511;28512 18829;18830;18831;18832 18830 4 RTECSVARESQGSSGPEFSCNSFLQEK Unmodified 3076.3615 0.36146077 884 P28356 HOXD9 Homeobox protein Hox-D9 yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 130.64 112.64 4 1.3262E-05 1 81319 20150910_Q1_SA_NiHu_Masterprac_group13_C 56.588 49.712 7096200 0 0 7096200 0 0 0 6513 884 6418 28513 18833 18833 1 RTEEGPTLSYGRDGR Unmodified 1692.818 0.81795989 52 P43243;A8MXP9;D6REM6;D6R991 MATR3 Matrin-3 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 69.434 62.335 3 0.018275 1 43643 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.939 17.838 5128500 0 864670 908510 670020 1044300 1641000 6514 52 6419 28514;28515;28516;28517;28518 18834 18834 1 RTERVEQFLTIAR Unmodified 1617.8951 0.895088 1447 Q9BTC0;Q9BTC0-1;Q9BTC0-2;Q9BTC0-3 DIDO1 Death-inducer obliterator 1 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 130.03 127.55 4 0.0038543 2 85570 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.338 45.981 7906000 0 0 0 2514400 0 5391600 6515 1447 6420 28519;28520 18835;18836 18836 2 RTEVTLETLGPKPAAR Unmodified 1737.9737 0.97373226 1046 Q08050-2;Q08050;H0YGS4;Q08050-3 FOXM1 Forkhead box protein M1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 106.47 98.527 3 0.01208 1 67041 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.372 43.054 9656400 0 1913500 1825100 557990 1335600 4024300 6516 1046 6421 28521;28522;28523;28524;28525 18837 18837 1 RTFEYEADKNPK Unmodified 1496.726 0.72595699 1011 P78524 ST5 Suppression of tumorigenicity 5 protein yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 1 1 1 55.825 50.016 3 0.0056985 4 35842 20150910_Q1_SA_NiHu_Masterprac_group10_B 82.705 68.074 4752800 575190 1033900 664810 440950 806070 1231900 6517 1011 6422 28526;28527;28528;28529;28530;28531;28532 18838;18839;18840;18841 18840 4 RTFGSTSQSSSFSK Unmodified 1505.711 0.71103521 1492 Q9H582-2;Q9H582;F5GWV4 ZNF644 Zinc finger protein 644 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 61.854 54.907 3 2.6426E-05 7 39542 20150910_Q1_SA_NiHu_Masterprac_group10_B 92.269 77.838 23374000 2828200 6836900 3410800 2617700 2839600 4840900 6518 1492 6423 28533;28534;28535;28536;28537;28538;28539 18842;18843;18844;18845;18846;18847;18848 18846 7 RTGFSTSPESPYTHWK Unmodified 1879.8853 0.88531118 454 E9PKG1;Q99873-3;Q99873-2;G5E9B6;Q99873;H7C2I1 PRMT1 Protein arginine N-methyltransferase 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 2 112.43 102.91 3;4 0.00017824 2 70305 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.143 52.154 16478000 1170400 1346700 969410 0 1956100 11035000 6519 454 6424 28540;28541;28542;28543;28544;28545 18849;18850 18849 2 RTGLGLASLPGPVK Unmodified 1364.814 0.81398414 1283 Q8IWZ8;B4DVK3;Q8IWZ8-2 SUGP1 SURP and G-patch domain-containing protein 1 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 132.4 121.25 3 0.00071786 3 81403 20150910_Q1_SA_NiHu_Masterprac_group15_C 81.185 65.243 9111700 3962500 0 0 3230100 1919000 0 6520 1283 6425 28546;28547;28548 18851;18852;18853 18852 3 RTHSQGGYGSQGYKYNWK Unmodified 2115.9875 0.98748484 165 B4E363;Q9Y285 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 79.856 68.694 4 0.028798 1 54965 20150910_Q1_SA_NiHu_Masterprac_group13_C 35.348 23.808 3630700 0 0 1215400 0 970320 1444900 6521 165 6426 28549;28550;28551 18854 18854 1 RTIAQDYGVLK Unmodified 1262.6983 0.69828568 1044 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 2 2 2 2 108.61 99.464 2;3 0.00013583 8 67777 20150910_Q1_SA_NiHu_Masterprac_group15_B 103.43 41.665 248470000 14941000 45046000 20337000 9021500 43108000 116020000 6522 1044 6427 28552;28553;28554;28555;28556;28557;28558;28559;28560;28561;28562;28563;28564 18855;18856;18857;18858;18859;18860;18861;18862 18857 8 RTIAQDYGVLKADEGISFR Unmodified 2138.112 0.11201665 1044 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 132.98 125.15 3;4 5.8421E-65 7 85745 20150910_Q1_SA_NiHu_Masterprac_group13_B 122.94 99.245 174340000 4419600 55419000 13678000 19313000 4955100 76551000 6523 1044 6428 28565;28566;28567;28568;28569;28570;28571;28572 18863;18864;18865;18866;18867;18868;18869 18863 7 RTIKETDPDYEDVSVALPNK Unmodified 2289.1489 0.14885567 1609 Q9ULM3 YEATS2 YEATS domain-containing protein 2 yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 130.22 112.47 3 0.0030035 1 79420 20150910_Q1_SA_NiHu_Masterprac_group15_C 54.253 32.717 3431800 0 0 0 0 3431800 0 6524 1609 6429 28573 18870 18870 1 RTLAEPPAKGLLQPVK Unmodified 1717.025 0.025039544 1497 Q9H6R4-4;Q9H6R4;Q9H6R4-2;G8JLK7;Q9H6R4-3 NOL6 Nucleolar protein 6 yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 117.5 108.27 3;4 0.00080458 9 71801 20150910_Q1_SA_NiHu_Masterprac_group10_C 70.197 61.855 108570000 9018600 17289000 38000000 20309000 13479000 10474000 6525 1497 6430 28574;28575;28576;28577;28578;28579;28580;28581;28582;28583;28584;28585 18871;18872;18873;18874;18875;18876;18877;18878;18879 18879 9 RTLEGELHDLRGQVAK Unmodified 1820.9857 0.98569392 783 P02545;P02545-3;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q3BDU5;Q5TCJ4;Q5TCI8;H0YAB0 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 123.72 113.6 4 0.0017698 1 77578 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.885 39.712 1602100 301280 0 0 0 0 1300800 6526 783 6431 28586;28587 18880 18880 1 RTLPVDSSHGFSSK Unmodified 1516.7634 0.76340513 147 B4DZN9;Q6P4F7;H3BR51 ARHGAP11A Rho GTPase-activating protein 11A yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 76.089 69.17 3 7.5424E-05 2 48119 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.633 61.283 5013100 0 1697800 1604800 0 0 1710500 6527 147 6432 28588;28589;28590 18881;18882 18882 0 RTLSTSTLRSAK Unmodified 1319.7521 0.75211216 1632 Q9Y2F5 KIAA0947 Uncharacterized protein KIAA0947 yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 50.063 46.026 3 0.010822 1 37809 20150910_Q1_SA_NiHu_Masterprac_group13_C 69.864 42.436 2700900 0 721450 945340 487090 0 547010 6528 1632 6433 28591;28592;28593;28594 18883 18883 1 RTNAENEFVTIK Unmodified 1420.731 0.73104237 789 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 99.826 91.697 2;3 1.1187E-26 12 67110 20150910_Q1_SA_NiHu_Masterprac_group15_C 119.25 71.282 166590000 7048800 43698000 46415000 14066000 23613000 31750000 + 6529 789 6434 28595;28596;28597;28598;28599;28600;28601;28602;28603;28604;28605;28606 18884;18885;18886;18887;18888;18889;18890;18891;18892;18893;18894;18895 18891 11 RTNAENEFVTIKK Unmodified 1548.826 0.82600539 789 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 80.745 73.217 3 1.6403E-73 2 50726 20150910_Q1_SA_NiHu_Masterprac_group10_B 138.31 95.276 29729000 3023200 7854600 6645800 4053600 6079000 2073000 + 6530 789 6435 28607;28608;28609;28610;28611;28612 18896;18897 18897 1 RTNPPGGKGSGIFDESTPVQTR Unmodified 2300.1509 0.15092135 98 Q9H910;B4DLH4;H3BU16;Q9H910-2;A6NGP5;H3BMV3;B4DL85;H3BMT0;H3BTV5 HN1L Hematological and neurological expressed 1-like protein yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 102.67 94.852 4 0.038381 1 68952 20150910_Q1_SA_NiHu_Masterprac_group15_C 42.639 28.202 9236600 0 2099600 1398200 456690 1482900 3799200 6531 98 6436 28613;28614;28615;28616;28617 18898 18898 0 RTPAPEPEPCEASELPAK Unmodified 1977.9466 0.94659081 203 B7ZAS8;Q9ULV3-3;H0Y5D5;Q9BTG3;Q9ULV3-4;Q9ULV3-2;Q5SYW2;Q9ULV3;F5H2X7;Q96KB7 CIZ1 Cip1-interacting zinc finger protein yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 99.707 91.986 3 0.0015231 5 63035 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.944 24.106 9020400 0 1739700 2278700 1136200 1587300 2278500 6532 203 6437 28618;28619;28620;28621;28622 18899;18900;18901;18902;18903 18901 5 RTPLEDYSGECFRK Unmodified 1756.8203 0.82026808 1288 Q8IY37;F5H3Y4 DHX37 Probable ATP-dependent RNA helicase DHX37 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 107 97.336 3 0.027343 1 64648 20150910_Q1_SA_NiHu_Masterprac_group10_B 52.009 30.763 6586700 1079000 1510600 1432700 1414100 1150200 0 6533 1288 6438 28623;28624;28625;28626;28627 18904 18904 1 RTPSATFQQATKIK Unmodified 1575.8733 0.87328993 464 Q03164-2;Q03164;E9PQG7;E9PR05;Q9Y6P1 KMT2A;MLL Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 82.723 76.674 3 0.0056409 1 59773 20150910_Q1_SA_NiHu_Masterprac_group13_C 67.095 56.05 6415100 0 0 2062900 2759800 0 1592500 6534 464 6439 28628;28629;28630 18905 18905 1 RTQQMLHGLQR Unmodified 1366.7252 0.7251859 726 O60216;E5RI01;E5RFZ5;B3KUT8 RAD21 Double-strand-break repair protein rad21 homolog yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 58.552 57.498 3 0.029966 1 40605 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.68 22.641 954220 0 0 0 0 0 954220 6535 726 6440 28631 18906 18906 1 RTSLSAEDAEVTK Unmodified 1405.7049 0.7048872 1578 Q9P2D1 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 68.902 61.658 3 0.00055718 3 48724 20150910_Q1_SA_NiHu_Masterprac_group15_C 90.707 90.707 4470200 542310 595670 648160 398040 864190 1421900 6536 1578 6441 28632;28633;28634;28635;28636;28637 18907;18908;18909 18907 3 RTSSAQVEGGVHSLHSYEK Unmodified 2071.0083 0.0082798605 610 H0Y4R1;P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 70.794 66.709 3 0.00051256 3 46668 20150910_Q1_SA_NiHu_Masterprac_group13_B 60.938 29.619 2055800 1053400 0 0 1002300 0 0 6537 610 6442 28638;28639 18910;18911;18912 18910 3 RTTSPSSDTDLLDRSASK Unmodified 1935.9498 0.94976193 237 Q96QT6-2;Q96QT6-3;C9J9G2;Q96QT6 PHF12 PHD finger protein 12 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 83.523 73.722 3 0.0071568 2 57970 20150910_Q1_SA_NiHu_Masterprac_group13_C 52.52 25.265 2564400 0 1617200 947200 0 0 0 6538 237 6443 28640;28641 18913;18914 18913 2 RTVDLSSHLAK Unmodified 1225.6779 0.67788459 523 F8WF32;F5H6I5;P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 71.332 63.278 3 0.0055807 2 45200 20150910_Q1_SA_NiHu_Masterprac_group10_C 63.966 35.258 3046200 856550 0 1324200 865410 0 0 6539 523 6444 28642;28643;28644 18915;18916 18916 2 RTVIEDCNKVQEK Unmodified 1617.8145 0.81445442 1470 Q9BZD4;E9PQC4 NUF2 Kinetochore protein Nuf2 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 49.77 43.979 3 0.0069705 1 31401 20150910_Q1_SA_NiHu_Masterprac_group10_B 67.095 51.55 5478400 666800 1105900 1191800 405880 655290 1452700 6540 1470 6445 28645;28646;28647;28648;28649;28650 18917 18917 1 RTVLEGSTASTSPADHSALPNQSLTVR Unmodified 2794.4209 0.4209482 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 125.19 118.17 4 8.9708E-15 3 81477 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.818 61.017 12683000 4740800 3673400 0 0 0 4268800 6541 1325 6446 28651;28652;28653 18918;18919;18920 18918 2 RTVTAAGAENIQQK Unmodified 1485.79 0.78995423 1159 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 55.993 49.684 3 1.7331E-08 6 40778 20150910_Q1_SA_NiHu_Masterprac_group13_C 99.834 74.64 42930000 4589000 6659400 5597700 3801500 9867400 12415000 6542 1159 6447 28654;28655;28656;28657;28658;28659 18921;18922;18923;18924;18925;18926 18922 6 RTVTAAGAENIQQKTDEK Unmodified 1959.0021 0.0021318501 1159 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 61.247 54.372 3 1.8208E-132 8 39004 20150910_Q1_SA_NiHu_Masterprac_group10_B 148.52 115.6 45298000 11525000 3219700 9481500 12261000 5464500 3346800 6543 1159 6448 28660;28661;28662;28663;28664;28665;28666 18927;18928;18929;18930;18931;18932;18933;18934 18932 8 RVAIFIEKTK Unmodified 1203.7339 0.7339429 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 88.944 80.246 3 0.029901 3 55040 20150910_Q1_SA_NiHu_Masterprac_group13_B 75.566 46.858 25746000 0 0 2800100 3827000 4845500 14274000 6544 1575 6449 28667;28668;28669;28670 18935;18936;18937 18935 3 RVCEEIAIIPSK Unmodified 1413.765 0.76498503 625 H0YN73;P0CW22;P08708;H0YN88;H0YK46 RPS17L;RPS17 40S ribosomal protein S17-like;40S ribosomal protein S17 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 116.87 114.08 3 0.00085356 1 77743 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.412 58.69 2462600 0 813200 0 0 0 1649400 6545 625 6450 28671;28672 18938 18938 1 RVEIFHETGK Unmodified 1214.6408 0.6407708 1504 Q9H967 WDR76 WD repeat-containing protein 76 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 66.106 60.641 3 0.0016155 2 42461 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.701 49.276 4468100 0 0 0 605590 1926300 1936200 6546 1504 6451 28673;28674;28675 18939;18940 18940 2 RVGIVAWHPTAR Unmodified 1361.768 0.768037 33 Q9ULV4;A7MAP0;B4E3S0;F8W1H8;F8VUX3;F8VSA4;F8VRE9;F8VTT6;F8VVB7;F8VV53 CORO1C Coronin-1C;Coronin yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 108.98 96.409 3 0.006088 3 65737 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.52 57.52 22983000 0 0 3386100 0 1712900 17884000 6547 33 6452 28676;28677;28678 18941;18942;18943 18942 3 RVGLSGAPADACSTAQK Unmodified 1687.8312 0.83116712 1327 Q8NFW8 CMAS N-acylneuraminate cytidylyltransferase yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 1 1 1 1 72.707 66.557 3 8.7975E-08 3 46439 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.502 74.738 10869000 1714600 2773700 1293900 754770 0 4331600 6548 1327 6453 28679;28680;28681;28682;28683;28684 18944;18945;18946 18945 3 RVHSGEKPYQCER Unmodified 1644.7791 0.77907197 1320 Q8NDX6 ZNF740 Zinc finger protein 740 yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 26.203 19.059 4 0.0023272 1 15623 20150910_Q1_SA_NiHu_Masterprac_group13_C 64.827 48.886 1067300 0 0 971540 0 95768 0 6549 1320 6454 28685;28686 18947 18947 1 RVIERPPLTQQQAAQK Unmodified 1862.0486 0.048628533 27 F5H101;Q76FK4-2;Q76FK4-4;A6NJK7;Q76FK4;F8WE42;Q76FK4-3;F5GWN9;F5H540 NOL8 Nucleolar protein 8 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 74.638 66.282 3 0.010638 1 47415 20150910_Q1_SA_NiHu_Masterprac_group10_C 53.3 28.382 1567800 1208400 0 0 0 213560 145830 6550 27 6455 28687;28688;28689 18948 18948 1 RVIISAPSADAPMFVMGVNHEK Oxidation (M) 2384.1981 0.19807124 791 P04406;E7EUT5;E7EUT4;E7EU54 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 1 1 By matching By matching By matching By MS/MS By matching By matching 1 1 133.12 132.82 3 0.00019367 1 85526 20150910_Q1_SA_NiHu_Masterprac_group13_B 58.712 41.209 13609000 0 11111000 0 2497900 0 0 6551 791 6456 28690;28691 18949 18949 78 1 RVKGGQPISPNGQDPEDGDSTASPSSE Unmodified 2711.2271 0.227059 948 P50221;A8MWF9;F8VXS6 MEOX1 Homeobox protein MOX-1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 77.373 70.42 3 7.3971E-09 1 55910 20150910_Q1_SA_NiHu_Masterprac_group13_C 62.193 51.366 16673000 0 3855500 7967000 0 0 4850700 6552 948 6457 28692;28693;28694 18950 18950 1 RVLLQASQDENFGNTTPR Unmodified 2045.029 0.029015303 975 P57740;G3V1T4 NUP107 Nuclear pore complex protein Nup107 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 120.39 109.43 3 2.4628E-14 3 72953 20150910_Q1_SA_NiHu_Masterprac_group10_C 99.011 90.252 11065000 2630700 0 1248800 773480 1841300 4570900 6553 975 6458 28695;28696;28697;28698;28699 18951;18952;18953 18953 3 RVLLQASQDENFGNTTPRNQVIPR Unmodified 2752.4369 0.43687304 975 P57740;G3V1T4 NUP107 Nuclear pore complex protein Nup107 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 130.7 130.4 4 3.1173E-07 1 83204 20150910_Q1_SA_NiHu_Masterprac_group13_B 61.276 49.881 3905100 0 2326600 0 1578500 0 0 6554 975 6459 28700;28701 18954 18954 1 RVNDSDDLIMTENEVGK Unmodified 1933.9051 0.90511992 1447 Q9BTC0;Q9BTC0-1 DIDO1 Death-inducer obliterator 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 124.1 111.42 3 0.005643 1 76070 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.633 24.876 9463900 873810 0 4948600 0 0 3641500 6555 1447 6460 28702;28703;28704 18955 18955 1 RVNILSDMHLR Unmodified 1352.7347 0.73468796 140 P51114-3;B4DXZ6;P51114;E7EU85;E9PFF5;P51114-2;C9JZE0;C9JY20 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 131.28 126.32 3 9.4369E-05 1 86152 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.539 72.785 3453000 0 0 0 0 0 3453000 6556 140 6461 28705 18956 18956 1 RVNLSHQLNNIK Unmodified 1434.8055 0.80554471 1415 Q96QE3;Q96QE3-2 ATAD5 ATPase family AAA domain-containing protein 5 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 84.695 75.47 3 0.0012493 4 59130 20150910_Q1_SA_NiHu_Masterprac_group13_C 74.698 46.314 10948000 0 1524300 1859700 0 1814500 5749100 6557 1415 6462 28706;28707;28708;28709 18957;18958;18959;18960 18957 4 RVNSASSSNPPAEVDPDTILK Unmodified 2196.1022 0.10223983 1465 Q9BY77;Q9BY77-2 POLDIP3 Polymerase delta-interacting protein 3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.77 125.8 3 0.021603 1 85574 20150910_Q1_SA_NiHu_Masterprac_group15_B 31.767 8.3966 4172600 0 0 0 0 0 4172600 6558 1465 6463 28710 18961 18961 1 RVPSNASWEQAMK Unmodified 1502.73 0.72999651 438 E9PHJ7;O75400-2;O75400-3;F8W9L2;O75400;F5H578 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 105.31 95.237 3 2.9345E-60 1 65033 20150910_Q1_SA_NiHu_Masterprac_group15_B 133.98 94.191 8631100 533100 2063100 790240 0 1924200 3320600 6559 438 6464 28711;28712;28713;28714;28715 18962 18962 1 RVPSPTPAPKEAVR Unmodified 1503.8522 0.85216056 1623 Q9UQ35;F5GWZ7;Q9UQ35-2 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 62.726 55.058 3 0.017407 1 40776 20150910_Q1_SA_NiHu_Masterprac_group10_C 55.724 38.999 805260 805260 0 0 0 0 0 6560 1623 6465 28716 18963 18963 1 RVQDPLAELVK Unmodified 1266.7296 0.7295858 1302 Q8N5C6;Q8N5C6-2;B7Z6X7 SRBD1 S1 RNA-binding domain-containing protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 133.19 130.4 2 1.1217E-85 2 85889 20150910_Q1_SA_NiHu_Masterprac_group10_B 150.06 94.742 57461000 0 19301000 0 0 0 38161000 6561 1302 6466 28717;28718 18964;18965 18965 2 RVQLAEDLKK Unmodified 1198.7034 0.70337105 336 O60313;E5KLK1;E5KLJ6;E5KLJ9;O60313-2;E5KLJ5;H7C141 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 64.318 59.467 3 0.013191 2 41979 20150910_Q1_SA_NiHu_Masterprac_group13_B 88.134 56.537 8011700 0 1718000 0 1587000 1430100 3276500 6562 336 6467 28719;28720;28721;28722 18966;18967 18966 2 RVSISEGDDKIEYR Unmodified 1665.8322 0.83221298 862 P22087 FBL rRNA 2'-O-methyltransferase fibrillarin yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 92.4 84.588 3 2.0512E-29 6 64534 20150910_Q1_SA_NiHu_Masterprac_group13_C 116.58 104.43 45544000 4117700 2312900 2852900 3919500 19426000 12916000 6563 862 6468 28723;28724;28725;28726;28727;28728 18968;18969;18970;18971;18972;18973 18969 6 RVSISRSQHDILQMICSK Unmodified 2157.1147 0.11467596 919;920 P46013;F5H4V4;P46013-2;E7EN66 MKI67 Antigen KI-67 no no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 132.03 132.03 4 0.030342 1 85028 20150910_Q1_SA_NiHu_Masterprac_group13_B 35.133 17.376 40632000 0 0 0 40632000 0 0 6564 919;920 6469 28729 18974 18974 1 RVSLEPHQGPGTPESK Unmodified 1717.8747 0.87474649 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;Q9BTE9 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 1 2 2 3 63.136 57.049 3;4 2.0657E-164 8 46965 20150910_Q1_SA_NiHu_Masterprac_group13_C 159.34 126.64 203220000 37642000 34296000 34251000 22918000 36230000 37881000 6565 1121 6470 28730;28731;28732;28733;28734;28735;28736;28737;28738;28739;28740;28741;28742;28743 18975;18976;18977;18978;18979;18980;18981;18982 18976 8 RVSLEPHQGPGTPESKK Unmodified 1845.9697 0.96970951 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;Q9BTE9 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 53.723 47.746 4 0.0094009 2 33959 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.947 26.425 11512000 0 1438600 1346400 1120700 1924300 5681900 6566 1121 6471 28744;28745;28746;28747;28748 18983;18984 18983 1 RVVGCLIAEPIK Unmodified 1353.7802 0.78024117 1176 Q56NI9;Q49AP4 ESCO2 N-acetyltransferase ESCO2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 124.55 119.78 3 0.019326 1 81361 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.28 27.447 1360400 0 0 0 0 0 1360400 6567 1176 6472 28749 18985 18985 1 RVVHLGVGTPGR Unmodified 1246.7258 0.72583783 225 C9J384;E9PHS3;Q9BQ75 CMSS1 Protein CMSS1 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 73.639 65.368 3 0.00096751 4 51466 20150910_Q1_SA_NiHu_Masterprac_group15_C 84.605 65.648 9714900 612150 0 660310 551740 3783600 4107000 6568 225 6473 28750;28751;28752;28753;28754 18986;18987;18988;18989 18988 4 RVVSEDTSHYILIK Unmodified 1658.8992 0.89917033 571 F8WDY3;P28715;I3L0G8 ERCC5 DNA repair protein complementing XP-G cells yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 119.85 108.92 3 9.8912E-06 1 74564 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.09 54.359 1575500 0 0 472870 0 0 1102600 6569 571 6474 28755;28756 18990 18990 1 RWECPALPQGWER Unmodified 1683.794 0.79399375 776 O95983 MBD3 Methyl-CpG-binding domain protein 3 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.6 132 3 0.032069 1 85554 20150910_Q1_SA_NiHu_Masterprac_group10_B 37.654 14.511 7282800 0 7282800 0 0 0 0 6570 776 6475 28757 18991 18991 1 RWEFCDIPR Unmodified 1277.5975 0.59752577 295 CON__P06868 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 132.7 122.38 3 0.0054161 2 87414 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.38 76.543 12751000 4427600 0 0 0 0 8323800 + 6571 295 6476 28758;28759 18992;18993 18992 2 RWEFCDIPRCTTPPPSSGPK Unmodified 2387.1151 0.11506989 295 CON__P06868 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 131.31 121.81 3;4 3.9132E-38 10 86171 20150910_Q1_SA_NiHu_Masterprac_group15_B 110.77 90.307 430930000 125320000 29068000 79616000 77513000 33282000 86125000 + 6572 295 6477 28760;28761;28762;28763;28764;28765;28766;28767;28768;28769;28770;28771 18994;18995;18996;18997;18998;18999;19000;19001;19002;19003 18997 10 RYDALSEHNLK Unmodified 1344.6786 0.67861287 1604 Q9UKY1 ZHX1 Zinc fingers and homeoboxes protein 1 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 70.616 63.288 3 7.2059E-05 3 51194 20150910_Q1_SA_NiHu_Masterprac_group13_C 100.04 69.148 13775000 957120 1843700 1985400 895570 3058400 5034700 6573 1604 6478 28772;28773;28774;28775;28776;28777 19004;19005;19006 19005 3 RYDYCDIPECEDK Unmodified 1761.6974 0.69743533 295 CON__P06868 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 100.47 91.388 3 0.0011549 5 66971 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.92 69.92 12431000 0 4958100 2500000 1893600 3079700 0 + 6574 295 6479 28778;28779;28780;28781 19007;19008;19009;19010;19011 19010 5 RYESHPVCADLQAK Unmodified 1672.7991 0.79913871 268 Q9NX63;C9JRZ6 CHCHD3 Coiled-coil-helix-coiled-coil-helix domain-containing protein 3, mitochondrial yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 67.118 60.968 3 0.00062819 3 42637 20150910_Q1_SA_NiHu_Masterprac_group13_B 70.68 22.147 3687300 0 380160 0 2164600 1142600 0 6575 268 6480 28782;28783;28784;28785 19012;19013;19014 19012 3 RYGPMEEPLVIEK Unmodified 1559.8018 0.80176447 902 P36969-2;P36969 GPX4 Phospholipid hydroperoxide glutathione peroxidase, mitochondrial yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 2 131.11 127.04 2;3 1.5648E-24 4 83460 20150910_Q1_SA_NiHu_Masterprac_group10_B 116.9 84.424 114110000 43511000 27217000 0 43387000 0 0 6576 902 6481 28786;28787;28788;28789 19015;19016;19017;19018 19017 4 RYIGIVKQAGLER Unmodified 1501.8729 0.872896 958 P52597;B4DKS8 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 101.9 92.654 3 0.0051081 2 61644 20150910_Q1_SA_NiHu_Masterprac_group10_C 74.475 60.61 16833000 7981500 1894900 4013300 2303100 640700 0 6577 958 6482 28790;28791;28792;28793;28794 19019;19020 19020 2 RYLDYEKQHGTEK Unmodified 1665.8111 0.8110836 1112 Q14690 PDCD11 Protein RRP5 homolog yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 50.26 43.817 4 0.0014545 2 36585 20150910_Q1_SA_NiHu_Masterprac_group15_C 74.537 54.413 3618300 0 0 775520 661970 1122800 1058000 6578 1112 6483 28795;28796;28797;28798 19021;19022 19022 2 SAAAEAPTDDQPTDLSLPKNPHKPTGK Unmodified 2785.3883 0.38825109 1117 Q14865-2;Q14865 ARID5B AT-rich interactive domain-containing protein 5B yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 103.4 93.746 4 0.0034591 3 62797 20150910_Q1_SA_NiHu_Masterprac_group10_B 36.316 29.218 2909300 0 1312800 1596500 0 0 0 6579 1117 6484 28799;28800 19023;19024;19025 19024 3 SAADARYEAACNR Unmodified 1453.6368 0.63682441 1478 Q9H0C8 ILKAP Integrin-linked kinase-associated serine/threonine phosphatase 2C yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 42.707 41.853 3 0.01641 1 29808 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.95 41.107 370350 0 0 0 0 0 370350 6580 1478 6485 28801 19026 19026 1 SAADEVDGLGVARPHYGSVLDNER Acetyl (Protein N-term) 2568.2205 0.22045748 929 P46940;H0YLE8 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 1 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 133.03 130.25 3 6.1153E-40 2 88310 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.48 86.076 34554000 0 18337000 0 0 0 16217000 6581 929 6486 28802;28803 19027;19028 19027 2 SAAEPVASTPASR Unmodified 1242.6204 0.62042929 939 P49674;H0Y5S9;H0Y682 CSNK1E Casein kinase I isoform epsilon yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 57.108 50.683 2 0.0011454 7 41297 20150910_Q1_SA_NiHu_Masterprac_group13_C 90.412 57.22 46303000 2852300 8167400 6459500 2044300 5893100 20886000 6582 939 6487 28804;28805;28806;28807;28808;28809;28810 19029;19030;19031;19032;19033;19034;19035 19030 7 SAAGYPDYYCK Unmodified 1293.5336 0.53358811 695 O14646-2;O14646 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 85.714 83.782 2 0.0169 1 57122 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.885 44.878 896800 0 273260 0 0 0 623550 6583 695 6488 28811;28812 19036 19036 1 SAALLRR Acetyl (Protein N-term) 827.49774 0.49773538 1269 Q86WX3;F8WFE7 RPS19BP1 Active regulator of SIRT1 yes no 1 0 1 By matching By matching By matching By matching By MS/MS By matching 1 105.44 88.595 2 0.015859 1 65391 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.176 6.7114 0 0 0 0 0 0 0 6584 1269 6489 28813 19037 19037 1 SAAMTLNER Unmodified 991.47568 0.4756793 1563;452 Q9NYF8-2;Q9NYF8;Q9NYF8-4;E9PK09;E9PQN2;E9PKI6;Q9NYF8-3;E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 66.702 59.592 2 0.0012891 6 47255 20150910_Q1_SA_NiHu_Masterprac_group15_C 107.21 74.015 24120000 1942000 2367000 7326700 4402800 2503800 5577100 6585 1563;452 6490 28814;28815;28816;28817;28818;28819 19038;19039;19040;19041;19042;19043 19041 6 SAAMTLNERFTSYQK Unmodified 1745.8407 0.84066917 1563;452 Q9NYF8-2;Q9NYF8;Q9NYF8-4;E9PK09;E9PQN2;E9PKI6;Q9NYF8-3;E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 124.75 114.37 2;3 2.596E-32 6 75834 20150910_Q1_SA_NiHu_Masterprac_group10_C 119 96.65 71582000 54031000 3481400 3087400 8348600 486800 2147200 6586 1563;452 6491 28820;28821;28822;28823;28824;28825;28826 19044;19045;19046;19047;19048;19049 19048 6 SAAPSQLQGNSFKKPK Unmodified 1686.9053 0.90531834 1660 Q9Y620;E5RJF7;F6WBS8;E5RI14;E5RHN9 RAD54B DNA repair and recombination protein RAD54B yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 63.899 62.745 4 0.0040621 1 43916 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.03 34.501 938260 0 0 0 0 0 938260 6587 1660 6492 28827 19050 19050 1 SAAPSSVPAAPPGPEPR Unmodified 1586.8053 0.80526994 1158 Q1W6H9 FAM110C Protein FAM110C yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 103.21 93.56 2 0.0014626 1 63869 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.428 43.431 3585400 0 974000 1078000 0 259980 1273400 6588 1158 6493 28828;28829;28830;28831 19051 19051 1 SAAPSTLDSSSTAPAQLGK Unmodified 1787.8901 0.89012178 672 H7C4H2;Q9Y5M8 SRPRB Signal recognition particle receptor subunit beta yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 106.55 97.719 2 0.00014412 3 64889 20150910_Q1_SA_NiHu_Masterprac_group10_B 82.01 61.918 7283000 1639100 2379000 1065400 0 0 2199400 6589 672 6494 28832;28833;28834;28835 19052;19053;19054 19053 3 SAAQAAAQTNSNAAGK Unmodified 1459.7015 0.70153315 1316;1317 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein no no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 2 1 1 30.854 27.669 2;3 0.0010964 3 21917 20150910_Q1_SA_NiHu_Masterprac_group13_C 69.485 50.286 18195000 0 13009000 2406000 0 0 2780300 6590 1316;1317 6495 28836;28837;28838;28839 19055;19056;19057 19055 3 SAAQAAAQTNSNAAGKQLR Unmodified 1856.9453 0.94528567 1316;1317 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein no no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 60.513 53.118 3 0.00059188 2 37318 20150910_Q1_SA_NiHu_Masterprac_group13_B 76.051 68.612 4172300 0 0 1843300 990350 430250 908320 6591 1316;1317 6496 28840;28841;28842;28843 19058;19059 19058 2 SAAVSEQQQLEQK Unmodified 1444.7158 0.71578623 390 E7EVK1;O75376;B4DJ25 NCOR1 Nuclear receptor corepressor 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 64.287 57.293 2 1.0542E-34 6 41115 20150910_Q1_SA_NiHu_Masterprac_group10_B 122.52 88.47 5049900 200120 824640 1354000 530180 621480 1519500 6592 390 6497 28844;28845;28846;28847;28848;28849 19060;19061;19062;19063;19064;19065 19063 6 SACGVCPGRLR Unmodified 1231.5914 0.59139454 933 P49207 RPL34 60S ribosomal protein L34 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 63.222 55.402 3 0.011458 2 44646 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.426 47.463 3056600 466100 0 0 0 880770 1709800 6593 933 6498 28850;28851;28852 19066;19067 19067 2 SADEGQTVFYTCTNCK Unmodified 1879.7717 0.77166291 1574 Q9P1U0 ZNRD1 DNA-directed RNA polymerase I subunit RPA12 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 109.64 99.084 2 0.0020877 2 67341 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.158 50.086 6968900 1201300 1469700 605740 0 1658900 2033300 6594 1574 6499 28853;28854;28855;28856;28857 19068;19069 19068 2 SAEEAYKQQIK Unmodified 1293.6565 0.65648044 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 55.693 49.452 2;3 0.0013267 6 34781 20150910_Q1_SA_NiHu_Masterprac_group13_B 92.239 42.959 14857000 2145000 2891700 1681500 1246400 3219700 3672700 6595 578 6500 28858;28859;28860;28861;28862;28863;28864;28865;28866;28867;28868;28869 19070;19071;19072;19073;19074;19075 19070 6 SAEEVEEIKAEK Unmodified 1360.6722 0.67219008 1339 Q8WUA2 PPIL4 Peptidyl-prolyl cis-trans isomerase-like 4 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 70.935 62.463 2 5.0176E-06 2 43980 20150910_Q1_SA_NiHu_Masterprac_group10_B 93.623 65.391 992300 0 0 338970 0 0 653320 6596 1339 6501 28870;28871;28872 19076;19077 19077 2 SAELSGEFPKEPR Unmodified 1445.7151 0.71505795 1466 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 97.385 95.303 3 0.0013956 1 65120 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.89 44.822 3334700 0 1395800 0 0 0 1938900 6597 1466 6502 28873;28874 19078 19078 1 SAESCATWKVQK Unmodified 1393.666 0.66599927 1271 Q86Y07-4;Q86Y07-3;Q86Y07;Q86Y07-5;Q86Y07-2;E9PFA9 VRK2 Serine/threonine-protein kinase VRK2 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 76.324 60.809 3 0.016357 1 48262 20150910_Q1_SA_NiHu_Masterprac_group15_C 54.005 34.873 1739200 0 0 1042900 0 696310 0 6598 1271 6503 28875;28876 19079 19079 1 SAESPSWTPAEHVAK Unmodified 1595.758 0.7579854 1080 Q13415 ORC1 Origin recognition complex subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 95.922 88.152 2;3 6.2046E-44 10 66587 20150910_Q1_SA_NiHu_Masterprac_group13_C 124.81 96.022 131630000 12289000 21948000 22717000 14969000 20946000 38757000 6599 1080 6504 28877;28878;28879;28880;28881;28882;28883;28884;28885;28886;28887 19080;19081;19082;19083;19084;19085;19086;19087;19088;19089 19083 9 SAFLCGVMK Unmodified 1011.4882 0.48815825 731;715 O43390;O43390-2;Q2L7G6;F6UXX1;O60506-2;O60506;O60506-4;O60506-3 HNRNPR;SYNCRIP Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 131.46 131.46 2 0.0089047 2 84475 20150910_Q1_SA_NiHu_Masterprac_group13_B 86.67 48.859 4640200 0 0 0 4640200 0 0 6600 715;731 6505 28888 19090;19091 19091 2 SAFRDGTAEVETR Unmodified 1437.6848 0.68482046 504 F5H0P9;Q9HAW0 BRF2 Transcription factor IIIB 50 kDa subunit yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 75.81 64.848 3 0.0052067 1 45239 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.167 43.446 2765900 0 0 458130 0 305540 2002200 6601 504 6506 28889;28890;28891 19092 19092 1 SAGAGQGSSNSVSDTGAHGVQGSSAR Unmodified 2331.0436 0.043555747 395 H0Y3R4;Q9C0A6-2;Q9C0A6-3;Q9C0A6;E7EWN3 SETD5 SET domain-containing protein 5 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 50.493 46.319 3 0.0034578 3 38601 20150910_Q1_SA_NiHu_Masterprac_group15_C 38.688 30.545 2527800 0 504220 0 629590 587890 806130 6602 395 6507 28892;28893;28894;28895 19093;19094;19095 19094 3 SAGEAGPGGSQGRVVR Unmodified 1483.7492 0.74915205 1178 Q5C9Z4 NOM1 Nucleolar MIF4G domain-containing protein 1 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 43.418 38.195 3 0.002815 4 27033 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.287 31.073 5647800 996750 564030 593930 595620 1133400 1764000 6603 1178 6508 28896;28897;28898;28899;28900;28901 19096;19097;19098;19099 19096 4 SAGEEEDGPVLTDEQK Unmodified 1702.7534 0.75335353 1214 Q66PJ3;F5GYV5;H7BZV4;B3V0L1;F8WCT1;F5H7X4;Q66PJ3-4;Q66PJ3-3;Q66PJ3-2 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 83.466 76.472 2 0.0021925 2 52859 20150910_Q1_SA_NiHu_Masterprac_group10_B 60.489 51.888 5686800 756730 2290200 1563200 1076700 0 0 6604 1214 6509 28902;28903;28904;28905 19100;19101 19100 2 SAGEEEDGPVLTDEQKSR Unmodified 1945.8865 0.88649297 1214 Q66PJ3;F5GYV5;H7BZV4;B3V0L1;F8WCT1;F5H7X4;Q66PJ3-4;Q66PJ3-3;Q66PJ3-2 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 76.638 67.705 3 0.0016994 1 47176 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.197 42.375 4103600 537740 487240 534840 0 1214600 1329300 6605 1214 6510 28906;28907;28908;28909;28910 19102 19102 1 SAGGIGVAVSCIR Unmodified 1245.65 0.64995528 870 P23921;H0YFI0;E9PD78;E9PL69;E9PP77;H0YCY7 RRM1 Ribonucleoside-diphosphate reductase large subunit;Ribonucleoside-diphosphate reductase yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 124.89 122.1 2 0.0020505 1 82898 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.814 60.176 12021000 0 1293500 0 0 0 10728000 6606 870 6511 28911;28912 19103 19103 0 SAGQGEVLVYVEDPAGHQEEAK Unmodified 2312.0921 0.092069069 860 Q5HY54;P21333-2;P21333;A6NDY9;F8WE98 FLNA Filamin-A yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 131.5 131.2 3 0.027134 1 84341 20150910_Q1_SA_NiHu_Masterprac_group10_B 32.695 19.41 13343000 0 11089000 0 2254000 0 0 6607 860 6512 28913;28914 19104 19104 1 SAGVPSRVIHIR Unmodified 1290.7521 0.75205258 882 P26599;P26599-2;P26599-3 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 89.826 82.387 3 0.00747 3 56141 20150910_Q1_SA_NiHu_Masterprac_group13_B 61.815 39.788 89637000 0 14622000 14728000 8101300 16181000 36004000 6608 882 6513 28915;28916;28917;28918;28919 19105;19106;19107 19105 3 SAGVQCFGPTAEAAQLESSK Unmodified 2036.9473 0.94731909 239 C9JBJ1;C9JTV6;F8WD69;P22102-2;P22102;C9JZG2;C9JKQ7 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 2 1 1 132.27 123.04 2;3 1.1786E-26 3 84963 20150910_Q1_SA_NiHu_Masterprac_group10_B 101.48 89.278 22931000 0 12397000 6727500 0 3806100 0 6609 239 6514 28920;28921;28922;28923 19108;19109;19110 19109 2 SAHATAPVNIAGSR Unmodified 1350.7004 0.70041094 1623 Q9UQ35;F5GWZ7 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 4 1 2 2 2 2 73.885 66.034 2;3 0.0018473 7 46404 20150910_Q1_SA_NiHu_Masterprac_group10_C 64.798 46.725 33659000 5686000 3580000 3583200 1814200 7389500 11606000 6610 1623 6515 28924;28925;28926;28927;28928;28929;28930;28931;28932;28933;28934;28935;28936 19111;19112;19113;19114;19115;19116;19117 19114 6 SAHATAPVNIAGSRTAAALAPASLTSAR Unmodified 2632.4045 0.40451028 1623 Q9UQ35;F5GWZ7 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 131.89 122.39 3;4 9.5684E-64 5 84591 20150910_Q1_SA_NiHu_Masterprac_group13_B 106.88 87.465 267270000 98396000 68140000 38052000 36810000 13507000 12365000 6611 1623 6516 28937;28938;28939;28940;28941;28942 19118;19119;19120;19121;19122 19118 4 SAHLTNPWNEHKPVK Unmodified 1756.9009 0.90090166 1407 Q96MU7-2;Q96MU7 YTHDC1 YTH domain-containing protein 1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 80.873 73.921 4 0.00057984 2 51065 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.258 54.269 4336700 0 1127600 1036300 0 0 2172800 6612 1407 6517 28943;28944;28945 19123;19124 19124 1 SAHSLQPSISQK Unmodified 1281.6677 0.66771383 1292 Q8IYW5 RNF168 E3 ubiquitin-protein ligase RNF168 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 1 2 1 2 60.491 54.337 2;3 0.0014941 5 38835 20150910_Q1_SA_NiHu_Masterprac_group10_B 78.548 44.787 19296000 1600600 2944600 8051700 1196700 0 5502600 6613 1292 6518 28946;28947;28948;28949;28950;28951;28952;28953 19125;19126;19127;19128;19129 19129 5 SAHTLVGPTPSR Unmodified 1221.6466 0.64658446 1082;383 Q13428-7;E7ETY2;Q13428-3;Q13428-8 TCOF1 Treacle protein no no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 61.49 56.195 3 0.0015241 4 45244 20150910_Q1_SA_NiHu_Masterprac_group15_C 83.226 64.554 6238400 1130300 853310 0 429760 2273000 1552000 6614 383;1082 6519 28954;28955;28956;28957;28958 19130;19131;19132;19133 19132 4 SAIDLTPIVVEDKEEK Unmodified 1784.9408 0.94076037 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 133.15 131.29 2;3 0 8 88491 20150910_Q1_SA_NiHu_Masterprac_group15_B 241.39 177.64 875820000 0 415960000 0 58346000 0 401520000 6615 486 6520 28959;28960;28961;28962;28963;28964 19134;19135;19136;19137;19138;19139;19140;19141 19139 8 SAIDLTPIVVEDKEEKK Unmodified 1913.0357 0.035723389 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 131.59 125.55 3;4 1.0245E-07 4 86750 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.355 67.245 43579000 0 22273000 14827000 0 0 6478400 6616 486 6521 28965;28966;28967;28968 19142;19143;19144;19145 19143 4 SAILQENSTLSASNK Unmodified 1561.7948 0.79476484 628 Q6JHV3;H0YMI4;Q9Y6I4;B3KMX7;H0YLB7;H0YKU8;F5H1A6;B4DWJ6 USP3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 3 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 1 105.42 94.234 2 1.8386E-05 5 63701 20150910_Q1_SA_NiHu_Masterprac_group10_C 77.726 48.402 30759000 1812700 4134600 2476200 0 8099700 14235000 6617 628 6522 28969;28970;28971;28972;28973;28974 19146;19147;19148;19149;19150 19150 4 SAILSAQSAANVRK Unmodified 1414.7892 0.78922595 595 G5E9F3;Q9Y6J0;F5H085;B5MEB3 CABIN1 Calcineurin-binding protein cabin-1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 87.061 79.679 3 0.0083913 1 54484 20150910_Q1_SA_NiHu_Masterprac_group10_B 46.797 31.828 4733400 299200 999530 1507800 0 0 1927000 6618 595 6523 28975;28976;28977;28978 19151 19151 1 SAIMVKKMR 2 Oxidation (M) 1094.594 0.5940203 497 I3L4S5;I3L0T4;F5GYQ8;Q15067-2;Q15067 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 yes no 0 2 2 By matching By matching By matching By matching By matching By MS/MS 1 133.87 128.91 2 0.034282 1 89051 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.96 12.691 0 0 0 0 0 0 0 6619 497 6524 28979 19152 19152 58;59 1 SAKPQDAVVPESSSCAPSANGWCPGDR Unmodified 2829.2446 0.2446401 1576 Q9P275;Q9P275-2;E9PEW0 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 120.4 117.66 3 0.00087645 1 80076 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.656 41.962 4379300 0 2584600 0 0 0 1794700 6620 1576 6525 28980;28981 19153 19153 1 SALAFLNRGQPSSSNAGNK Unmodified 1917.9657 0.96568676 1479 Q9H0H5;F8VRD2;F8W1E5;F8W1T4;F8VV37;F8VQF5;F8VYH6;F8VQZ5;F8VZ66;F8VV47;F8VWY4;F8VVE5 RACGAP1 Rac GTPase-activating protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 120.99 111.03 3 2.2143E-51 7 80097 20150910_Q1_SA_NiHu_Masterprac_group13_C 116.61 116.61 69415000 6989100 11830000 33694000 0 0 16901000 6621 1479 6526 28982;28983;28984;28985;28986 19154;19155;19156;19157;19158;19159;19160 19156 7 SALAPNLLTSGK Unmodified 1170.6608 0.66083754 706 O15446;O15446-2 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 132.02 114.27 2 0.0018781 1 81073 20150910_Q1_SA_NiHu_Masterprac_group15_C 84.892 45.013 6862100 0 0 0 0 6862100 0 6622 706 6527 28987 19161 19161 1 SALCNADSPKDPVLPMK Unmodified 1841.9016 0.90155487 1159 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1 1 123.85 114.77 2;3 1.5017E-07 7 81038 20150910_Q1_SA_NiHu_Masterprac_group13_C 90.259 55.047 93218000 34410000 6881800 25874000 9278200 4282300 12492000 6623 1159 6528 28988;28989;28990;28991;28992;28993;28994;28995 19162;19163;19164;19165;19166;19167;19168 19164 6 SALEEFSK Unmodified 909.44436 0.4443624 539 Q8TAQ2-2;F8VTJ5;Q8TAQ2;F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 1 1 1 1 1 91.163 83.285 2 1.4398E-25 4 57217 20150910_Q1_SA_NiHu_Masterprac_group15_B 136.27 88.611 52599000 8013500 6257500 9970900 5274800 6314900 16768000 6624 539 6529 28996;28997;28998;28999;29000;29001;29002 19169;19170;19171;19172 19170 4 SALEQPETGK Unmodified 1058.5244 0.52440364 1620 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 54.782 42.802 2 0.02 1 35201 20150910_Q1_SA_NiHu_Masterprac_group13_C 63.624 32.338 419630 0 0 419630 0 0 0 6625 1620 6530 29003 19173 19173 1 SALFSESQK Unmodified 995.49238 0.49237523 1399 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 77.557 70.046 2 0.033202 2 48816 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.076 6.1598 12595000 1167400 2120000 3275700 1313900 1733900 2983700 6626 1399 6531 29004;29005;29006;29007;29008;29009 19174;19175 19175 2 SALGDDINFEK Unmodified 1207.5721 0.57208211 1322 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 126.25 119.4 2 0.025646 3 77406 20150910_Q1_SA_NiHu_Masterprac_group10_C 52.79 18.92 19400000 14248000 0 0 2230000 0 2922100 6627 1322 6532 29010;29011;29012 19176;19177;19178 19178 1 SALGPGVPHIINTK Unmodified 1402.7932 0.79324869 1475 Q9GZS1-2;Q9GZS1;E7EX70 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 129.79 118.39 3 5.4171E-20 3 77192 20150910_Q1_SA_NiHu_Masterprac_group10_C 108.23 93.236 39828000 10758000 1850000 7405300 0 4993900 14821000 6628 1475 6533 29013;29014;29015;29016;29017 19179;19180;19181 19181 3 SALLSHQDIHNKVK Unmodified 1588.8685 0.8685389 1147 Q15776 ZKSCAN8 Zinc finger protein with KRAB and SCAN domains 8 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 63.038 55.669 3 0.0012784 1 44909 20150910_Q1_SA_NiHu_Masterprac_group15_C 70.438 45.316 861530 0 0 0 334860 526670 0 6629 1147 6534 29018;29019 19182 19182 1 SALQSYLK Unmodified 908.49673 0.49673232 1618 Q9UNY4 TTF2 Transcription termination factor 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 106.52 103.06 2 0.028515 1 70460 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.23 13.634 1090900 0 0 0 0 0 1090900 6630 1618 6535 29020 19183 19183 1 SALSTVSFYNQNK Unmodified 1457.7151 0.71505795 1176 Q56NI9;E5RFE4;E5RFP7;E5RIE3 ESCO2 N-acetyltransferase ESCO2 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 128.47 123.15 2 7.2483E-24 4 84921 20150910_Q1_SA_NiHu_Masterprac_group15_B 113.95 99.514 50900000 14713000 7242200 0 2043500 0 26901000 6631 1176 6536 29021;29022;29023;29024 19184;19185;19186;19187 19185 3 SAMPEGYVQER Unmodified 1265.571 0.57103625 310 CON__Q9U6Y5 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 91.743 84.724 2 0.011996 1 57976 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.528 37.232 29335000 0 13757000 6687900 0 0 8890000 + 6632 310 6537 29025;29026;29027 19188 19188 1 SANVSSIWHR Unmodified 1155.5785 0.57850489 1624 Q9UQ84-4;Q9UQ84 EXO1 Exonuclease 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 101.55 94.26 2 0.021394 1 64426 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.466 46.328 5827300 0 975480 1380300 0 0 3471600 6633 1624 6538 29028;29029;29030 19189 19189 1 SAPAGSSHPAASAR Acetyl (Protein N-term) 1307.6218 0.62182627 207 O95487-2;O95487;B7ZKM8 SEC24B Protein transport protein Sec24B yes no 1 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 41.547 37.519 2 0.00060275 1 26455 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.031 47.277 1793600 0 0 0 263410 467040 1063100 6634 207 6539 29031;29032;29033 19190 19190 1 SAPAMQSSGSFNYARPK Unmodified 1797.8468 0.84681718 1343 Q8WX93-3;Q8WX93;Q8WX93-4 PALLD Palladin yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 100.28 91.087 2;3 0.0016716 6 62203 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.673 59.673 28303000 0 9439700 4015500 1449800 4588000 8810000 6635 1343 6540 29034;29035;29036;29037;29038;29039 19191;19192;19193;19194;19195;19196 19193 6 SAPASQASLRATSSTQSLAR Unmodified 1989.0239 0.023929925 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;Q9BTE9 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 89.719 84.029 3 0.00046586 1 56981 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.848 43.813 33025000 18400000 14626000 0 0 0 0 6636 1121 6541 29040;29041 19197 19197 1 SAQIADLQQK Unmodified 1100.5826 0.58258722 768 O95239;O95239-2;F5H4Q9;Q2VIQ3 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 68.713 67.325 2 0.0047104 2 47121 20150910_Q1_SA_NiHu_Masterprac_group10_B 87.568 36.292 6137900 0 1881100 0 368910 0 3887900 6637 768 6542 29042;29043;29044 19198;19199 19199 2 SAQNLASRNLK Unmodified 1200.6575 0.65748349 965 P54132;F5H7R6;H0YNU5 BLM Bloom syndrome protein yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 53.837 45.908 2;3 0.0050112 2 33079 20150910_Q1_SA_NiHu_Masterprac_group10_B 74.611 47.462 3407100 333940 532110 2081300 331570 128160 0 6638 965 6543 29045;29046;29047;29048;29049;29050 19200;19201 19201 2 SAQQEASADVATPKMPGQSVR Unmodified 2157.0484 0.048430116 1345 Q8WYP5;Q8WYP5-3;Q8WYP5-2 AHCTF1 Protein ELYS yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 112.22 97.033 3 0.026492 1 65582 20150910_Q1_SA_NiHu_Masterprac_group10_C 34.649 20.785 2746200 2125700 0 620480 0 0 0 6639 1345 6544 29051;29052 19202 19202 1 SAQQEASADVATPKMPGQSVRK Unmodified 2285.1434 0.14339313 1345 Q8WYP5;Q8WYP5-3;Q8WYP5-2 AHCTF1 Protein ELYS yes no 0 0 2 By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 1 1 1 1 1 93.214 85.165 4 8.4415E-06 4 58528 20150910_Q1_SA_NiHu_Masterprac_group10_C 61.276 51.221 23056000 7144200 2959400 3888000 2172100 3383600 3508600 6640 1345 6545 29053;29054;29055;29056;29057;29058;29059 19203;19204;19205;19206 19206 4 SAQYKKPPITVDSVCLK Unmodified 1933.0343 0.034283601 1501 Q9H7Z6 KAT8 Histone acetyltransferase KAT8 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 2 121.19 113.39 3;4 0.027333 3 80423 20150910_Q1_SA_NiHu_Masterprac_group13_C 44.299 27.77 12521000 2092300 2511600 3927500 506150 401980 3081500 6641 1501 6546 29060;29061;29062;29063;29064;29065;29066;29067 19207;19208;19209 19207 3 SARLQCPQCVFGTNCPK Unmodified 2021.9234 0.92336972 1492 Q9H582-2;Q9H582;F5GWV4 ZNF644 Zinc finger protein 644 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 124.55 106.56 3 0.028531 1 77261 20150910_Q1_SA_NiHu_Masterprac_group13_C 67.299 45.496 0 0 0 0 0 0 0 6642 1492 6547 29068 19210 19210 1 SARQNESSQPKVAEESGGQK Unmodified 2116.0145 0.01448745 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 36.903 28.03 4 0.012799 1 22540 20150910_Q1_SA_NiHu_Masterprac_group13_C 39.364 23.052 695710 0 0 695710 0 0 0 6643 919;920 6548 29069 19211 19211 1 SASAPAAEGEGTPTQPASEKEPEMPGPR Acetyl (Protein N-term) 2820.2872 0.28721642 901 P35659;P35659-2;B4DFG0;D6R9L5 DEK Protein DEK yes no 1 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 124.24 111.1 3 1.2509E-10 3 79212 20150910_Q1_SA_NiHu_Masterprac_group13_C 60.472 56.743 98645000 42385000 18039000 28322000 0 9899200 0 6644 901 6549 29070;29071;29072;29073 19212;19213;19214 19212 3 SASELTAGAEAEAEEVKTGK Unmodified 1976.9538 0.95384425 1482 Q9H0U9;B4DN10 TSPYL1 Testis-specific Y-encoded-like protein 1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 130.79 115.1 3 1.0975E-17 1 76409 20150910_Q1_SA_NiHu_Masterprac_group10_C 97.271 80.385 3083700 3083700 0 0 0 0 0 6645 1482 6550 29074 19215 19215 1 SASLKNVDAAVSPRGAAAQAGER Unmodified 2225.1513 0.1512557 1422 Q96T58 SPEN Msx2-interacting protein yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 105.81 92.022 4 0.0070029 1 62446 20150910_Q1_SA_NiHu_Masterprac_group10_C 40.158 18.131 1198200 681940 0 516250 0 0 0 6646 1422 6551 29075;29076 19216 19216 1 SASNTAAEFGEPLPK Unmodified 1517.7362 0.73618733 740 O75362;E7ET68 ZNF217 Zinc finger protein 217 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 121.83 114 2 0.0025153 2 77956 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.165 47.3 9275400 2352100 1313300 3052100 385230 0 2172700 6647 740 6552 29077;29078;29079;29080;29081 19217;19218 19218 2 SASVAPFTCK Unmodified 1066.5117 0.51173046 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 88.692 80.843 2 1.9889E-61 6 55517 20150910_Q1_SA_NiHu_Masterprac_group15_B 145.99 86.08 36426000 7613200 3245600 5266000 4179300 8323500 7798500 6648 531 6553 29082;29083;29084;29085;29086;29087;29088 19219;19220;19221;19222;19223;19224 19220 6 SATESTPGERGEEKPLDGQEHR Unmodified 2409.1157 0.11565806 430 Q12873;E9PG89 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 2 2 2 1 1 2 53.414 47.358 3;4 3.3377E-15 4 39084 20150910_Q1_SA_NiHu_Masterprac_group13_C 89.859 82.587 58017000 2884100 16216000 15792000 1750000 2937400 18437000 6649 430 6554 29089;29090;29091;29092;29093;29094;29095;29096;29097;29098 19225;19226;19227;19228 19226 4 SATEYKNEEYQR Unmodified 1516.6794 0.67940073 1407 Q96MU7-2;Q96MU7 YTHDC1 YTH domain-containing protein 1 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 48.391 42.751 3 0.0021903 4 30612 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.788 68.333 6927000 752120 737700 2002400 925990 888200 1620600 6650 1407 6555 29099;29100;29101;29102;29103;29104 19229;19230;19231;19232 19230 4 SATNLPQLK Unmodified 970.54475 0.54474515 947 P49916-2;P49916 LIG3 DNA ligase 3 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 95.088 88.788 2 0.0060764 2 60935 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.598 30.179 2183100 0 0 0 344300 646590 1192200 6651 947 6556 29105;29106;29107 19233;19234 19233 2 SATNTTLPHMLMSQR Unmodified 1686.8182 0.81815959 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 130.13 127.34 2;3 1.5039E-70 2 85702 20150910_Q1_SA_NiHu_Masterprac_group15_B 134.4 110.32 35503000 0 640500 0 0 0 34862000 6652 1344 6557 29108;29109 19235;19236 19235 2 SATVKPGAVGAGEFVSPCESGDNTGEPSALEEQRGPLPLNK Unmodified 4152.007 0.0069658166 1063 Q12888;Q12888-2;A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 132.78 124.5 4 1.2148E-93 4 87996 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.674 80.439 74543000 0 10812000 19116000 12104000 3694000 28818000 6653 1063 6558 29110;29111;29112;29113;29114 19237;19238;19239;19240 19238 4 SAVCIADPLPTPSQEK Unmodified 1711.8451 0.84508585 1428 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 132.69 129.9 2 3.4203E-218 2 85295 20150910_Q1_SA_NiHu_Masterprac_group10_B 167.69 124 45155000 0 20911000 0 0 0 24244000 6654 1428 6559 29115;29116 19241;19242 19242 2 SAVGFDYQGK Unmodified 1070.5033 0.50327426 1104 Q14247;Q14247-3;Q14247-2;H7C314 CTTN Src substrate cortactin yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 90.488 87.067 2 0.010216 1 59434 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.9 50.547 9965700 1561400 2489800 0 308680 0 5605800 6655 1104 6560 29117;29118;29119;29120 19243 19243 1 SAVGFDYQGKTEK Unmodified 1428.6885 0.68850885 1104 Q14247;Q14247-3;Q14247-2;H7C314 CTTN Src substrate cortactin yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 84.908 75.107 3 0.0019706 2 52079 20150910_Q1_SA_NiHu_Masterprac_group10_B 84.365 56.934 3014700 0 1124400 1890300 0 0 0 6656 1104 6561 29121;29122 19244;19245 19245 2 SAVGFEYQGK Unmodified 1084.5189 0.51892433 1104 Q14247;Q14247-3;Q14247-2;H7C314 CTTN Src substrate cortactin yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 1 1 92.636 84.616 2 6.1332E-05 4 57709 20150910_Q1_SA_NiHu_Masterprac_group10_B 107.55 76.757 15946000 2876300 1838000 2294700 1645300 2788800 4502700 6657 1104 6562 29123;29124;29125;29126;29127;29128;29129 19246;19247;19248;19249 19248 4 SAVGFEYQGKTEK Unmodified 1442.7042 0.70415892 1104 Q14247;Q14247-3;Q14247-2;H7C314 CTTN Src substrate cortactin yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 2 2 1 1 1 79.58 72.456 2;3 0.0022762 4 50359 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.708 52.464 9327400 2856200 1578200 2182700 1435100 0 1275200 6658 1104 6563 29130;29131;29132;29133;29134;29135;29136;29137;29138 19250;19251;19252;19253 19252 4 SAVQKPPSTGSAPAIESVD Unmodified 1839.9214 0.92142191 1546 Q9NUQ3;Q9NUQ3-2 TXLNG Gamma-taxilin yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 118.4 104.02 2 0.019626 1 70008 20150910_Q1_SA_NiHu_Masterprac_group10_C 43.326 33.851 5277200 5277200 0 0 0 0 0 6659 1546 6564 29139 19254 19254 1 SAVRPASLNLNR Unmodified 1296.7262 0.72623176 1409 Q96N67-4;Q96N67-3;Q96N67-5;Q96N67-2;Q96N67-6;Q96N67;H0Y7L2 DOCK7 Dedicator of cytokinesis protein 7 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 1 1 1 1 91.019 81.862 3 5.3573E-18 4 56378 20150910_Q1_SA_NiHu_Masterprac_group15_B 113.61 77.932 12289000 2213900 1270200 1014200 0 3639900 4150600 6660 1409 6565 29140;29141;29142;29143;29144;29145 19255;19256;19257;19258 19255 4 SAVRVGIADGHR Unmodified 1236.6687 0.66871688 1031 Q01813;H0Y3P8;Q5VSR7;B1APP6 PFKP 6-phosphofructokinase type C yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 57.908 50.462 3 0.0028155 1 36124 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.273 44.317 953640 0 0 0 0 410640 543010 6661 1031 6566 29146;29147 19259 19259 1 SAVTTVVNPK Unmodified 1014.571 0.5709599 798 P05556 ITGB1 Integrin beta-1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 74.421 67.141 2 0.024054 1 46932 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.255 26.714 5632900 0 1666700 939800 249980 784670 1991800 6662 798 6567 29148;29149;29150;29151;29152 19260 19260 1 SAVTTVVNPKYEGK Unmodified 1491.7933 0.79330827 798 P05556 ITGB1 Integrin beta-1 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 87.669 81.683 2;3 0.0014627 7 56047 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.345 53.404 10960000 1105100 2208600 3468100 1115900 0 3062100 6663 798 6568 29153;29154;29155;29156;29157;29158;29159;29160;29161;29162 19261;19262;19263;19264;19265;19266;19267 19264 7 SAVTYLNSTMHPGTRK Unmodified 1761.8832 0.88320269 1371 Q96BD5-2;Q96BD5;Q96BD5-3 PHF21A PHD finger protein 21A yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 100.2 93.736 3 0.023257 1 64303 20150910_Q1_SA_NiHu_Masterprac_group15_B 35.711 35.711 2539900 934090 0 0 0 0 1605800 6664 1371 6569 29163;29164 19268 19268 1 SAWYRGQSPAGDGSPEPPTPR Unmodified 2212.0297 0.029743584 1497 Q9H6R4-4;Q9H6R4;Q9H6R4-2;G8JLK7;Q9H6R4-3 NOL6 Nucleolar protein 6 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 112.9 104.86 3 1.0861E-14 3 71876 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.756 89.756 27439000 0 3136700 2932500 1537600 6024300 13808000 6665 1497 6570 29165;29166;29167;29168;29169 19269;19270;19271 19270 3 SAYNVYVAER Unmodified 1170.5669 0.56693715 1019 Q00059;H7BYN3 TFAM Transcription factor A, mitochondrial yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 99.922 93.525 2 0.0030919 3 63776 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.112 68.358 12525000 2367800 824190 0 1633500 3379300 4320300 6666 1019 6571 29170;29171;29172;29173;29174 19272;19273;19274 19272 3 SAYNVYVAERFQEAK Unmodified 1773.8686 0.86859848 1019 Q00059;H7BYN3 TFAM Transcription factor A, mitochondrial yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 131.2 126.24 3 0.00024128 1 86056 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.738 67.565 8339000 0 0 0 0 0 8339000 6667 1019 6572 29175 19275 19275 1 SCAAAGTECLISGWGNTK Unmodified 1881.8349 0.83493187 284 CON__P00761 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 2 1 135.46 131.21 2;3 0 7 86489 20150910_Q1_SA_NiHu_Masterprac_group13_B 300.29 274.46 528480000 12416000 188660000 0 315750000 0 11650000 + 6668 284 6573 29176;29177;29178;29179;29180 19276;19277;19278;19279;19280;19281;19282 19276 7 SCCSCCPVGCAK Unmodified 1444.5026 0.50258081 303 Q8N339;P80297;P13640-2;P04732;P02795;CON__P67983;P13640 MT1M;MT1X;MT1G;MT1E;MT2A Metallothionein-1M;Metallothionein-1X;Metallothionein-1G;Metallothionein-1E;Metallothionein-2 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 46.71 41.254 2 0.0017931 2 33128 20150910_Q1_SA_NiHu_Masterprac_group13_C 78.548 78.548 7434000 429640 1237900 3509600 254010 384240 1618600 + 6669 303 6574 29181;29182;29183;29184;29185;29186 19283;19284 19284 2 SCEGQNPELLPKTPISPLK Unmodified 2107.0983 0.098340421 1533 Q9NQW6;Q9NQW6-2 ANLN Actin-binding protein anillin yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 132.91 120.97 3 2.8042E-06 2 85850 20150910_Q1_SA_NiHu_Masterprac_group13_B 87.088 54.758 16458000 0 0 5429000 6327600 4701200 0 6670 1533 6575 29187;29188;29189 19285;19286 19285 2 SCFLCMVCK Unmodified 1203.4909 0.49087714 859 P21291;B3KVC9;E9PS42 CSRP1 Cysteine and glycine-rich protein 1 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 133.12 133.12 2 0.011026 1 86187 20150910_Q1_SA_NiHu_Masterprac_group13_B 83.783 64.429 13728000 0 0 0 13728000 0 0 6671 859 6576 29190 19287 19287 1 SCGLHVTSIK Unmodified 1100.5648 0.56482866 852 P17812;B7Z9C4 CTPS1 CTP synthase 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 81.72 70.458 2 0.0060443 1 48859 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.014 49.567 6253800 0 0 787980 0 1705300 3760500 6672 852 6577 29191;29192;29193 19288 19288 1 SCGPASQSTLGLK Unmodified 1304.6395 0.63945017 1463;1464 Q9BXS6-2;Q9BXS6-3;Q9BXS6;E7ERR5;Q9BXS6-5;E9PB35;H0YMD2;Q9BXS6-4 NUSAP1 Nucleolar and spindle-associated protein 1 no no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 85.937 84.005 2 0.0070898 1 57456 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.595 31.883 3505600 0 733960 0 0 0 2771600 6673 1463;1464 6578 29194;29195 19289 19289 1 SCGPASQSTLGLKGSLK Unmodified 1689.872 0.8719693 1463;1464 Q9BXS6-2;Q9BXS6-3;Q9BXS6;E7ERR5;Q9BXS6-5;E9PB35;H0YMD2;Q9BXS6-4 NUSAP1 Nucleolar and spindle-associated protein 1 no no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 102.71 94.986 3 0.0021855 2 69007 20150910_Q1_SA_NiHu_Masterprac_group15_C 54.859 30.153 8645600 1770000 0 0 918310 1421900 4535400 6674 1463;1464 6579 29196;29197;29198;29199 19290;19291 19290 2 SCHAQFYQCHSLLK Unmodified 1777.8028 0.80284388 1300 Q8N554-2;Q8N554;H3BPT7;H3BTT0;H3BTK0 ZNF276 Zinc finger protein 276 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 100.7 94.082 3 0.00092216 1 64232 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.758 51.409 10553000 0 0 1754600 4954900 0 3843400 6675 1300 6580 29200;29201;29202 19292 19292 1 SCISCLNSNAMPR Unmodified 1508.6534 0.65340245 1273 Q86Y79 PTRH1 Probable peptidyl-tRNA hydrolase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 115.22 106.07 2 0.008202 3 72432 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.434 35.659 21510000 1235400 2269300 1524600 883260 4513400 11084000 6676 1273 6581 29203;29204;29205;29206;29207;29208 19293;19294;19295 19294 3 SCLVKEVEK Unmodified 1090.5692 0.56924534 193 B7Z6Q6;Q99661;Q99661-2;Q5JR91;B7Z7M6;Q5JR89 KIF2C Kinesin-like protein KIF2C yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 67.619 56.673 2 8.9927E-29 2 46176 20150910_Q1_SA_NiHu_Masterprac_group13_C 132.32 78.825 24690000 0 8899800 9937200 0 5853200 0 6677 193 6582 29209;29210;29211 19296;19297 19296 2 SCLVKEVEKMK Unmodified 1349.7047 0.70469296 193 B7Z6Q6;Q99661;Q99661-2;Q5JR91;B7Z7M6;Q5JR89 KIF2C Kinesin-like protein KIF2C yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 95.379 87.759 3 3.7386E-41 4 66419 20150910_Q1_SA_NiHu_Masterprac_group13_C 131.83 88.146 21528000 0 1867900 7816100 3747200 2814100 5282300 6678 193 6583 29212;29213;29214;29215;29216 19298;19299;19300;19301 19299 4 SCNEQIEESEK Unmodified 1351.5562 0.55617405 547 Q99590-2;F8VXG7;Q99590;F8W028 SCAF11 Protein SCAF11 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 47.468 36.69 2 0.016471 1 29910 20150910_Q1_SA_NiHu_Masterprac_group13_C 58.172 46.464 696360 0 0 696360 0 0 0 6679 547 6584 29217 19302 19302 1 SCNEQIEESEKHTANYDTEER Unmodified 2568.0671 0.067052885 547 Q99590-2;F8VXG7;Q99590;F8W028 SCAF11 Protein SCAF11 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 76.981 68.735 4 1.4352E-05 2 54970 20150910_Q1_SA_NiHu_Masterprac_group13_C 63.225 61.353 3479000 0 0 2127800 1351200 0 0 6680 547 6585 29218;29219 19303;19304 19304 2 SCPCGYIFISRK Unmodified 1486.7061 0.70608995 638 Q6PH81;H3BQL3;Q6PH81-2 C16orf87 UPF0547 protein C16orf87 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 130.42 112.55 3 0.0053108 1 81293 20150910_Q1_SA_NiHu_Masterprac_group13_C 58.754 36.203 3202000 0 0 2232800 0 969210 0 6681 638 6586 29220;29221 19305 19305 1 SCQAQPTTMAR Unmodified 1249.5543 0.55434033 291 CON__P02668 yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 49.301 43.034 2 0.0008967 4 32138 20150910_Q1_SA_NiHu_Masterprac_group10_C 93.839 70.827 18477000 2875800 0 4834500 2835000 2606100 5326000 + 6682 291 6587 29222;29223;29224;29225;29226 19306;19307;19308;19309 19309 4 SCQISCKSR Acetyl (Protein N-term) 1166.5172 0.51722654 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 1 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 40.528 38.297 2 0.014113 2 27010 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.499 23.063 10425000 1138900 5537600 0 2930900 0 817970 + 6683 302 6588 29227;29228;29229;29230 19310;19311 19310 2 SCQVENGRVIACFDSLKGR Unmodified 2195.0576 0.057555014 263;764 Q9NR56-3;Q9NR56-4;E9PBW7;Q9NR56-6;C9JP00;Q9NR56-2;Q9NR56-5;Q9NR56;H7C4T5;O95205;Q5VZF2-3;Q5VZF2-2;Q5VZF2;B4E3F7 MBNL1;MBLL;MBNL2 Muscleblind-like protein 1;Muscleblind-like protein 2 no no 0 0 2 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 2 1 1 129.71 123.72 3;4 2.3622E-10 4 83331 20150910_Q1_SA_NiHu_Masterprac_group10_B 90.385 80.82 77857000 0 18325000 22629000 16725000 5394800 14784000 6684 263;764 6589 29231;29232;29233;29234;29235;29236;29237 19312;19313;19314;19315 19315 4 SCREGICGSCAMNINGGNTLACTR Unmodified 2658.1189 0.11892777 861 P21912 SDHB Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 130.43 114.74 3 0.0034029 1 76062 20150910_Q1_SA_NiHu_Masterprac_group10_C 48.232 42.768 4830400 4830400 0 0 0 0 0 6685 861 6590 29238 19316 19316 1 SCRQFSSSYLSR Acetyl (Protein N-term) 1518.6885 0.68852563 899 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 1 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 116.91 107.19 2 0.005152 4 75922 20150910_Q1_SA_NiHu_Masterprac_group15_C 65.809 49.783 141980000 0 0 29926000 43963000 67599000 491180 + 6686 899 6591 29239;29240;29241;29242 19317;19318;19319;19320 19320 4 SCSAQAEPPEPNEYDIPPASHVYSLKPK Unmodified 3110.4655 0.46551513 197 O94762;B7Z8Y7 RECQL5 ATP-dependent DNA helicase Q5 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 131.3 130.99 4 0.0066297 1 84289 20150910_Q1_SA_NiHu_Masterprac_group13_B 34.04 29.03 14362000 0 8240500 0 6121800 0 0 6687 197 6592 29243;29244 19321 19321 1 SCSDRAMESTESR Unmodified 1514.609 0.60895468 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 31.715 30.827 3 0.0022298 1 21002 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.558 71.558 3169900 0 1509700 0 287550 0 1372700 6688 352;968 6593 29245;29246;29247 19322 19322 1 SCSDRAMESTESRHYPVFENPK Unmodified 2626.154 0.15403417 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 102.93 93.502 4 0.004586 4 69621 20150910_Q1_SA_NiHu_Masterprac_group13_C 44.743 38.329 36270000 5796900 9666200 7713200 4215900 8878000 0 6689 352;968 6594 29248;29249;29250;29251;29252 19323;19324;19325;19326 19324 3 SCSVPTGPATTFCSFDK Unmodified 1860.8022 0.80223475 309 Q9BYR8;CON__Q9BYR8 KRTAP3-1 Keratin-associated protein 3-1 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 132.88 132.88 2 7.0226E-14 1 85848 20150910_Q1_SA_NiHu_Masterprac_group13_B 100.04 92.128 45961000 0 0 0 45961000 0 0 + 6690 309 6595 29253 19327 19327 1 SCTAPTAQPHDRPLTASSSLAPGQR Unmodified 2605.2667 0.26669617 39 Q7Z5J4-3;E7EVZ3;Q7Z5J4;A8MTC3;Q7Z5J4-2;C9JWB0;A8MXE8;Q7Z5J4-4;E7ETW1 RAI1 Retinoic acid-induced protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 94.53 86.949 4 0.024814 1 59618 20150910_Q1_SA_NiHu_Masterprac_group15_B 32.548 22.199 7379800 0 1326100 1491900 1025600 1649500 1886600 6691 39 6596 29254;29255;29256;29257;29258 19328 19328 1 SCTPYELR Unmodified 1024.4648 0.46478027 1347 Q92466-2;Q92466-4;Q92466 DDB2 DNA damage-binding protein 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 86.859 77.765 2 0.02554 1 53609 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.043 57.135 7637400 423350 1184900 1300300 0 780760 3948100 6692 1347 6597 29259;29260;29261;29262;29263 19329 19329 1 SCTQSATAPQQEADAEVNTETLNK Unmodified 2592.161 0.16095327 1160 Q9ULU4-14;Q2HXV3;Q9ULU4-12;Q9ULU4-13;B7ZM62;H7C4X9;Q9ULU4-8;Q2HXV1;Q9ULU4-9;F8WAN7;Q9ULU4-5;Q9ULU4-10;Q9ULU4-7;E7ETU8;F5H0X3;Q9ULU4-4;Q9ULU4-3;Q9ULU4-6;H7C0U2;Q9ULU4;Q9ULU4-11;Q9ULU4-2 ZMYND8 Protein kinase C-binding protein 1 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 117.15 103.16 3 0.0079798 1 69048 20150910_Q1_SA_NiHu_Masterprac_group10_C 37.373 29.91 2804600 2804600 0 0 0 0 0 6693 1160 6598 29264 19330 19330 1 SCVSVEWAEGGATK Unmodified 1479.6664 0.6663932 193 B7Z6Q6;Q99661;Q5JR91;Q5JR89 KIF2C Kinesin-like protein KIF2C yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 2 121.96 111.48 2 3.9463E-14 3 76277 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.676 67.329 13535000 0 4302700 5482800 0 322540 3426800 6694 193 6599 29265;29266;29267;29268;29269 19331;19332;19333 19332 3 SCVSVEWAEGGATKGK Unmodified 1664.7828 0.78281994 193 B7Z6Q6;Q99661;Q5JR91;Q5JR89 KIF2C Kinesin-like protein KIF2C yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 108.62 97.895 2;3 3.4159E-27 3 64991 20150910_Q1_SA_NiHu_Masterprac_group10_B 111.81 86.686 14311000 2735500 7406700 4169300 0 0 0 6695 193 6600 29270;29271;29272;29273 19334;19335;19336 19335 3 SDAEDGEGTVASWELR Unmodified 1720.754 0.75402223 1388 Q96GM5-2;Q96GM5 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 132.21 131.91 2 0.002299 1 85239 20150910_Q1_SA_NiHu_Masterprac_group13_B 57.595 34.233 3785800 0 2325300 0 1460500 0 0 6696 1388 6601 29274;29275 19337 19337 1 SDAGLESDTAMK Unmodified 1223.534 0.53398204 1534 Q9NR30;Q3SWU7 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 80.918 65.053 2 0.021164 1 50818 20150910_Q1_SA_NiHu_Masterprac_group15_C 51.463 38.506 2530400 0 0 515490 0 2015000 0 6697 1534 6602 29276;29277 19338 19338 1 SDASPSSIRSLK Unmodified 1246.6517 0.65172941 892 P33992;E7EQY5;B1AHA9;F8WBR1 MCM5 DNA replication licensing factor MCM5 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 2 1 1 2 71.068 64.049 2;3 0.0018213 3 44947 20150910_Q1_SA_NiHu_Masterprac_group10_B 77.674 45.917 8894300 0 4189300 1779200 452840 320930 2152000 6698 892 6603 29278;29279;29280;29281;29282;29283;29284;29285 19339;19340;19341 19341 3 SDATSGILNSTNIQS Unmodified 1506.7162 0.71618016 676 H9KV59;O43663;O43663-2 PRC1 Protein regulator of cytokinesis 1 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 132.7 115.85 2 3.3111E-70 4 83293 20150910_Q1_SA_NiHu_Masterprac_group13_C 132.31 91.068 80455000 22438000 0 58016000 0 0 0 6699 676 6604 29286;29287 19342;19343;19344;19345 19343 4 SDAYYCTGDVTAWTK Unmodified 1736.7352 0.73520105 815 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 132.73 124.45 2 1.8485E-229 5 87964 20150910_Q1_SA_NiHu_Masterprac_group15_B 176.25 166.4 149500000 0 42933000 39032000 12718000 12588000 42234000 6700 815 6605 29288;29289;29290;29291;29292 19346;19347;19348;19349;19350 19348 4 SDCGVDCCCDPTK Unmodified 1572.5313 0.53129798 768 O95239;F5H4Q9 KIF4A Chromosome-associated kinesin KIF4A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 57.019 47.928 2 0.0016243 1 34235 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.537 56.951 1795000 0 0 457950 0 299170 1037900 6701 768 6606 29293;29294;29295 19351 19351 1 SDCGVDCCCDPTKCR Unmodified 1888.6631 0.66305721 768 O95239;F5H4Q9 KIF4A Chromosome-associated kinesin KIF4A yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 60.079 53.601 3 0.0025498 1 37510 20150910_Q1_SA_NiHu_Masterprac_group13_B 60.937 60.937 16225000 0 2518700 2718100 1425700 2283600 7279300 6702 768 6607 29296;29297;29298;29299;29300 19352 19352 1 SDDILEEGEK Unmodified 1133.5088 0.50881315 1248 Q7Z2T5;Q7Z2T5-2 TRMT1L TRMT1-like protein yes no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 85.293 77.913 2 0.0025538 3 53726 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.3 67.551 18586000 0 4757700 1860200 1052300 3067100 7848800 6703 1248 6608 29301;29302;29303;29304;29305 19353;19354;19355 19354 3 SDDYLPSIEQQPQQK Unmodified 1774.8374 0.83735793 1578 Q9P2D1;Q9P2D1-2 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 125.55 122.76 2 0.022098 1 82974 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.621 27.875 2068500 0 768730 0 0 0 1299800 6704 1578 6609 29306;29307 19356 19356 1 SDEEEQQYVIK Unmodified 1366.6252 0.62523989 436 Q9Y4E5-2;E9PH99;Q9Y4E5 ZNF451 Zinc finger protein 451 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 1 88.445 80.257 2 8.06E-56 6 61578 20150910_Q1_SA_NiHu_Masterprac_group13_C 142.19 105.87 23064000 2738600 3761100 3382500 1429300 3916900 7836200 6705 436 6610 29308;29309;29310;29311;29312;29313;29314;29315;29316 19357;19358;19359;19360;19361;19362 19358 6 SDESIKEEDKDQDEK Unmodified 1793.7803 0.78029656 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 28.547 25.287 3 0.0009638 2 20850 20150910_Q1_SA_NiHu_Masterprac_group13_C 85.909 75.913 3440800 0 579020 2658800 203020 0 0 6706 487 6611 29317;29318;29319 19363;19364 19364 2 SDFQVNLNNASR Unmodified 1363.648 0.64804102 275 O60716-32;O60716-31;O60716-29;O60716-27;O60716-30;O60716-28;O60716-26;O60716-25;O60716-24;O60716-23;O60716-21;O60716-19;O60716-22;O60716-20;O60716-16;O60716-18;O60716-15;O60716-17;O60716-13;O60716-11;O60716-14;O60716-12;O60716-10;O60716-8;O60716-9;E9PIE5;O60716-7;O60716-5;C9JZR2;O60716-3;O60716-6;F8WA43;O60716-4;O60716-2;O60716;H0YC95 CTNND1 Catenin delta-1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 118.5 106.38 2 0.0018947 2 77013 20150910_Q1_SA_NiHu_Masterprac_group13_C 85.45 63.121 8081100 1257600 0 2238200 0 0 4585300 6707 275 6612 29320;29321;29322 19365;19366 19365 2 SDGACDSPSSDKENSSQIAQDHQK Unmodified 2590.0838 0.083765582 1596 Q9UIG0-2;Q9UIG0 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 49.455 43.097 4 0.01084 3 30750 20150910_Q1_SA_NiHu_Masterprac_group15_B 36.744 31.624 3204900 0 0 631960 624790 1030100 918050 6708 1596 6613 29323;29324;29325;29326 19367;19368;19369 19369 3 SDGEAKPEPSPSPR Unmodified 1452.6845 0.68448611 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 38.311 33.573 3 1.5651E-07 2 23286 20150910_Q1_SA_NiHu_Masterprac_group10_B 95.183 70.219 14605000 1407600 2410100 3847500 618230 1936100 4385300 6709 487 6614 29327;29328;29329;29330;29331;29332 19370;19371 19371 1 SDHPGISITDLSK Unmodified 1368.6885 0.68850885 1048 Q08945 SSRP1 FACT complex subunit SSRP1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 116.09 113.31 3 0.0016366 2 73662 20150910_Q1_SA_NiHu_Masterprac_group10_B 82.705 41.463 2216900 0 1081300 0 0 0 1135700 6710 1048 6615 29333;29334 19372;19373 19373 2 SDMEWTSSSK Unmodified 1156.4707 0.47065351 1107 Q14527;Q14527-2;H7C5K0 HLTF Helicase-like transcription factor yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 68.825 67.67 2 0.0076039 1 47046 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.198 70.429 2374400 0 0 0 0 0 2374400 6711 1107 6616 29335 19374 19374 1 SDMHYSVAEGLKPAAPSAR Unmodified 1985.9629 0.96290957 911 P41182-2;P41182 BCL6 B-cell lymphoma 6 protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 111.1 103.44 3 0.018622 1 70887 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.057 17.533 2507500 0 732140 672800 0 0 1102600 6712 911 6617 29336;29337;29338 19375 19375 1 SDNFVICSVTGAGPREER Unmodified 1992.9323 0.93233773 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 130.82 130.52 3 0.00010238 1 83581 20150910_Q1_SA_NiHu_Masterprac_group10_B 84.046 54.948 25074000 0 22380000 0 2694600 0 0 6713 1325 6618 29339;29340 19376 19376 1 SDPQKAVDQPRQLFWEK Unmodified 2071.0487 0.048688112 776 O95983;O95983-2 MBD3 Methyl-CpG-binding domain protein 3 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 130.74 119.26 3 0.010471 2 82022 20150910_Q1_SA_NiHu_Masterprac_group13_C 66.568 39.443 45364000 0 0 33405000 0 0 11960000 6714 776 6619 29341;29342 19377;19378 19377 2 SDPVDPDKEPEKEDVSASGPSPEATQLAK Unmodified 3022.4255 0.42548404 1422 Q96T58 SPEN Msx2-interacting protein yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 111.69 102.03 4 0.013269 1 74474 20150910_Q1_SA_NiHu_Masterprac_group13_C 29.341 24.438 1651900 0 885390 766510 0 0 0 6715 1422 6620 29343;29344 19379 19379 1 SDQALNCGGTASTGSAGNVK Unmodified 1893.8487 0.84866768 689 O00287 RFXAP Regulatory factor X-associated protein yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 61.37 60.215 2 0.016015 1 42291 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.72 36.363 0 0 0 0 0 0 0 6716 689 6621 29345 19380 19380 1 SDQDHSMDEMTAVVK Acetyl (Protein N-term) 1733.7237 0.72365008 804 P08047;H3BUU5 SP1 Transcription factor Sp1 yes no 1 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 131.26 117.16 2 0 4 84545 20150910_Q1_SA_NiHu_Masterprac_group15_B 201.4 140.77 121860000 40497000 0 44984000 0 5953200 30429000 6717 804 6622 29346;29347;29348;29349 19381;19382;19383;19384 19382 4 SDQEAKPSTEDLGDK Acetyl (Protein N-term) 1660.7428 0.74278885 213 B8ZZJ0;B9A032;P63165;B8ZZN6 SUMO1 Small ubiquitin-related modifier 1 yes no 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 74.604 67.07 2 2.9712E-08 8 46996 20150910_Q1_SA_NiHu_Masterprac_group10_B 96.489 73.998 23117000 4328300 5551400 2966600 1665000 3581400 5024700 6718 213 6623 29350;29351;29352;29353;29354;29355;29356 19385;19386;19387;19388;19389;19390;19391;19392 19390 8 SDQEAKPSTEDLGDKK Acetyl (Protein N-term) 1788.8378 0.83775186 213 B8ZZJ0;B9A032;P63165;B8ZZN6 SUMO1 Small ubiquitin-related modifier 1 yes no 1 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 63.195 56.205 3 6.9459E-80 6 46001 20150910_Q1_SA_NiHu_Masterprac_group13_C 134.88 112.03 19042000 1919000 4076300 4012000 2413500 3138000 3483100 6719 213 6624 29357;29358;29359;29360;29361;29362;29363 19393;19394;19395;19396;19397;19398 19394 6 SDQSRLDSELK Unmodified 1276.6259 0.62590859 789 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 2 1 2 1 71.027 61.566 2;3 0.031885 2 49564 20150910_Q1_SA_NiHu_Masterprac_group13_C 62.166 30.132 22118000 0 5903600 4550700 1163100 7544700 2955500 + 6720 789 6625 29364;29365;29366;29367;29368;29369;29370 19399;19400 19399 2 SDSGKPYYYNSQTK Unmodified 1636.7369 0.73691561 438 E9PHJ7;O75400-2;O75400-3;F8W9L2;O75400;F5H578;H7C2N3;H0YG38 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 1 58.712 51.773 2;3 6.0247E-05 7 36982 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.812 76.539 38360000 3116300 5257300 8226100 4143500 7649400 9967200 6721 438 6626 29371;29372;29373;29374;29375;29376;29377;29378;29379;29380 19401;19402;19403;19404;19405;19406;19407 19403 7 SDSGTAAQTSLDIDKNEK Unmodified 1878.8807 0.88067931 535 Q96RL1;F8VQY2;Q96RL1-3;F2Z2T8;Q96RL1-2;Q96RL1-4;H7BXP9 UIMC1 BRCA1-A complex subunit RAP80 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 2 1 2 80.382 73.754 2;3 5.4696E-45 8 56338 20150910_Q1_SA_NiHu_Masterprac_group15_C 114.56 90.093 61495000 8307600 10313000 9247700 7476100 9841700 16309000 6722 535 6627 29381;29382;29383;29384;29385;29386;29387;29388;29389;29390;29391 19408;19409;19410;19411;19412;19413;19414;19415 19413 8 SDSNLGGHSIRCK Unmodified 1429.6732 0.67320991 1118 Q14966-3;Q14966;Q14966-4;Q14966-2;C9JBI6;F5H330 ZNF638 Zinc finger protein 638 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 41.452 36.798 3 0.0023228 2 29928 20150910_Q1_SA_NiHu_Masterprac_group13_C 65.295 65.295 3279700 370960 905610 1696500 306680 0 0 6723 1118 6628 29392;29393;29394;29395 19416;19417 19416 2 SDSPAIQLR Unmodified 985.51926 0.51925868 1420 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 93.331 84.483 2 0.023291 2 57801 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.016 37.329 7407600 0 0 902110 571770 1710700 4223100 6724 1420 6629 29396;29397;29398;29399 19418;19419 19419 2 SDSQTPSPNEIK Unmodified 1301.6099 0.60992418 1562 Q9NYD6;D6RAG4 HOXC10 Homeobox protein Hox-C10 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 64.49 60.412 2 0.0015649 3 42071 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.697 56.514 12715000 1189800 3080600 0 0 0 8444800 6725 1562 6630 29400;29401;29402 19420;19421;19422 19420 1 SDSQTPSPNEIKTEQSLAGPK Unmodified 2213.0812 0.081170032 1562 Q9NYD6;D6RAG4 HOXC10 Homeobox protein Hox-C10 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 105.01 98.064 3 0.009727 1 72192 20150910_Q1_SA_NiHu_Masterprac_group13_C 40.952 40.952 5989000 0 0 2367200 1431200 0 2190500 6726 1562 6631 29403;29404;29405 19423 19423 1 SDSSGLTSLK Unmodified 993.49785 0.49785453 27 F5H101;Q76FK4-2;Q76FK4-4;A6NJK7;Q76FK4;F8WE42;Q76FK4-3 NOL8 Nucleolar protein 8 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 75.377 67.933 2 0.0028576 4 52468 20150910_Q1_SA_NiHu_Masterprac_group15_C 95.483 73.144 19113000 2578100 3644300 226510 1849900 5305100 5509000 6727 27 6632 29406;29407;29408;29409;29410;29411 19424;19425;19426;19427 19424 4 SDTLTDSQIDRDLHK Unmodified 1742.8435 0.84350594 1250 Q7Z333-3;Q7Z333;Q7Z333-4 SETX Probable helicase senataxin yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 99.754 91.795 3 0.0073455 1 62735 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.108 33.446 5647500 328420 1494800 983990 0 0 2840300 6728 1250 6633 29412;29413;29414;29415 19428 19428 1 SDTSESGAGLTRFQAEASEK Acetyl (Protein N-term) 2111.9607 0.96072055 1614 Q9UNF1;Q9UNF1-2;H7BXW3;Q5H907 MAGED2 Melanoma-associated antigen D2 yes no 1 0 1 By matching By matching By MS/MS By matching By matching By matching 1 130.73 112.73 2 0.010534 1 81434 20150910_Q1_SA_NiHu_Masterprac_group13_C 42.123 27.243 3344600 0 0 3344600 0 0 0 6729 1614 6634 29416 19429 19429 1 SDTTDSSQGLQDKEQNLTR Unmodified 2121.9774 0.97743324 729 O60293-2;O60293 ZFC3H1 Zinc finger C3H1 domain-containing protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 82.837 76.102 3 0.016691 2 52423 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.777 24.987 2509800 0 875600 0 0 553990 1080200 6730 729 6635 29417;29418;29419 19430;19431 19430 2 SDVEAIFSK Unmodified 994.49713 0.49712625 68 G3V576;G3V4W0;B4DY08;G3V4C1;P07910-2;B2R603;G3V2Q1;P07910;G3V555;G3V575;P07910-4;O60812;G3V2H6;G3V4M8;Q569J8;G3V5X6;G3V3K6;G3V251;B4DSU6 HNRNPC;HNRNPCL1;HNRPC Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 1 125.78 115.13 1;2 2.9821E-19 6 81894 20150910_Q1_SA_NiHu_Masterprac_group13_C 120.27 82.724 81039000 38338000 6531700 10016000 2229300 13077000 10846000 6731 68 6636 29420;29421;29422;29423;29424;29425;29426 19432;19433;19434;19435;19436;19437 19432 6 SDVYYFSPSGK Unmodified 1248.5663 0.56626845 1581 Q9UBB5;Q9UBB5-3 MBD2 Methyl-CpG-binding domain protein 2 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 120.11 111.72 2 0.00089665 4 80192 20150910_Q1_SA_NiHu_Masterprac_group13_C 93.839 93.839 96639000 0 21877000 68520000 3442700 1932000 867510 6732 1581 6637 29427;29428;29429;29430;29431 19438;19439;19440;19441 19440 4 SEAASPALPVITK Unmodified 1282.7133 0.71326704 1434 Q99958 FOXC2 Forkhead box protein C2 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 2 1 1 127.06 125.52 2 0.0013002 4 84805 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.747 59.743 23343000 0 3616700 0 1629600 0 18097000 6733 1434 6638 29432;29433;29434;29435 19442;19443;19444;19445 19443 3 SEAGGLKQEIMTLKEEQNK Unmodified 2132.0783 0.078333261 936 P49454 CENPF Centromere protein F yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 129.75 129.14 3 0.0039479 1 82627 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.616 40.195 2212400 0 2212400 0 0 0 0 6734 936 6639 29436 19446 19446 1 SEAITSVDDAIRK Unmodified 1403.7256 0.72562264 205 E9PN68;E9PLN2;E9PNT0;E9PLH1;Q9H6S3;B7ZKL3 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 106.16 95.984 3 0.00067415 1 65600 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.24 34.415 2614300 0 0 900070 0 0 1714300 6735 205 6640 29437;29438 19447 19447 1 SEALRTKPDVCK Unmodified 1402.7238 0.7238485 516 Q9Y4C1;F5H4E6;F5H070;F8WE62 KDM3A Lysine-specific demethylase 3A yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 48.123 42.516 3 0.0062938 4 29688 20150910_Q1_SA_NiHu_Masterprac_group13_B 76.332 57.2 12561000 948780 2315300 4050800 1523400 878400 2844600 6736 516 6641 29439;29440;29441;29442;29443;29444 19448;19449;19450;19451 19448 4 SEATDGGFTSQIRK Unmodified 1495.7267 0.72668527 1415 Q96QE3;Q96QE3-2 ATAD5 ATPase family AAA domain-containing protein 5 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 84.062 76.484 2;3 4.1587E-55 9 52823 20150910_Q1_SA_NiHu_Masterprac_group15_B 130.19 110.66 25859000 2185800 5534900 6092100 2029000 3198600 6818600 6737 1415 6642 29445;29446;29447;29448;29449;29450;29451;29452;29453;29454;29455;29456 19452;19453;19454;19455;19456;19457;19458;19459;19460 19456 9 SEDGTPAEDGTPAATGGSQPPSMGR Unmodified 2372.0186 0.01864613 682 I3L1L3;Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 99.11 89.236 3 0.0081297 1 60893 20150910_Q1_SA_NiHu_Masterprac_group10_C 35.66 31.95 2778700 2778700 0 0 0 0 0 6738 682 6643 29457 19461 19461 1 SEDGTPAEDGTPAATGGSQPPSMGRK Unmodified 2500.1136 0.11360915 682 I3L1L3;Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 85.868 76.618 3 0.001433 3 57960 20150910_Q1_SA_NiHu_Masterprac_group15_C 40.177 32.921 5215700 0 1134500 875500 0 1673800 1531900 6739 682 6644 29458;29459;29460;29461 19462;19463;19464 19463 3 SEDGTPAEDGTPAATGGSQPPSMGRKK Unmodified 2628.2086 0.20857217 682 I3L1L3;Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 74.231 66.803 4 1.241E-219 9 48242 20150910_Q1_SA_NiHu_Masterprac_group10_C 153.58 144.82 48618000 12590000 7556400 8268000 8166600 6926500 5110100 6740 682 6645 29462;29463;29464;29465;29466;29467 19465;19466;19467;19468;19469;19470;19471;19472;19473 19473 9 SEDSSGAAGLSGLHR Unmodified 1442.675 0.67498405 1260 Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-3;Q86U86-9;Q86U86-2;Q86U86-8;Q86U86;E7EVG2;H0Y5B5 PBRM1 Protein polybromo-1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 81.202 72.229 2 0.0026064 1 50259 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.885 32.132 696540 0 0 109250 0 0 587290 6741 1260 6646 29468;29469 19474 19474 1 SEDVTPMEVTAEK Unmodified 1434.6548 0.65482546 440 O94916-2;O94916-3;O94916;O94916-4;E9PHR7 NFAT5 Nuclear factor of activated T-cells 5 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 109.51 97.559 2 0.013039 2 71877 20150910_Q1_SA_NiHu_Masterprac_group13_C 52.821 40.553 5893000 1325300 0 887310 1956200 1724300 0 6742 440 6647 29470;29471;29472;29473 19475;19476 19475 2 SEEANEPKAEKPDATADAEPDANQK Unmodified 2654.1944 0.19436189 1422 Q96T58 SPEN Msx2-interacting protein yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 61.332 56.594 4 0.0022446 2 40354 20150910_Q1_SA_NiHu_Masterprac_group10_B 49.66 38.252 4921200 0 980550 1957800 1053200 0 929650 6743 1422 6648 29474;29475;29476;29477 19477;19478 19478 2 SEEGNVSAPGPESK Unmodified 1386.6263 0.62630252 464 Q03164-2;Q03164;E9PQG7;E9PR05;H7BYJ6 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 57.898 50.729 2 4.2233E-05 7 36219 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.773 66.066 10783000 2035600 0 1261300 1641400 3253600 2590800 6744 464 6649 29478;29479;29480;29481;29482 19479;19480;19481;19482;19483;19484;19485 19482 7 SEEGNVSAPGPESKQATTPASRK Unmodified 2327.1353 0.13533087 464 Q03164-2;Q03164;E9PQG7;E9PR05;H7BYJ6 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 56.569 52.785 4 0.031586 1 39099 20150910_Q1_SA_NiHu_Masterprac_group10_C 31.503 8.4766 1339900 1073900 0 0 266000 0 0 6745 464 6650 29483;29484 19486 19486 1 SEEKISDSEGFKANLSLLR Unmodified 2122.0906 0.090612506 865 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 132.48 131.87 4 0.0025551 1 85413 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.189 33.936 3340400 0 3340400 0 0 0 0 6746 865 6651 29485 19487 19487 0 SEELAALSSQQPEK Unmodified 1515.7417 0.74166663 1084 Q13506 NAB1 NGFI-A-binding protein 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 107.02 97.319 2 1.2287E-07 2 64808 20150910_Q1_SA_NiHu_Masterprac_group10_B 96.371 61.451 3983700 0 2518100 1465500 0 0 0 6747 1084 6652 29486;29487 19488;19489 19489 2 SEELGLNSSKQPGTK Unmodified 1573.7948 0.79476484 388 E7EVA0 MAP4 Microtubule-associated protein yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 2 1 1 1 1 1 69.464 62.074 3 0.0029804 2 49088 20150910_Q1_SA_NiHu_Masterprac_group15_C 58.079 35.297 6421100 1804200 394670 555660 1104700 1565500 996310 6748 388 6653 29488;29489;29490;29491;29492;29493;29494 19490;19491 19490 2 SEFLSTAPR Unmodified 1006.5084 0.50835964 1081 Q13416 ORC2 Origin recognition complex subunit 2 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 96.789 88.539 2 0.0060764 6 60666 20150910_Q1_SA_NiHu_Masterprac_group10_C 93.598 62.176 49546000 8171200 6900000 7948700 3759800 7921200 14845000 6749 1081 6654 29495;29496;29497;29498;29499;29500;29501 19492;19493;19494;19495;19496;19497 19497 6 SEGDGTQDIVDK Unmodified 1262.5626 0.56263964 1201 Q5UIP0-2;Q5UIP0 RIF1 Telomere-associated protein RIF1 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 2 1 1 1 62.004 54.776 2 0.0017862 2 41058 20150910_Q1_SA_NiHu_Masterprac_group10_C 77.644 64.367 7165900 519870 3056900 710870 0 970070 1908200 6750 1201 6655 29502;29503;29504;29505;29506;29507 19498;19499 19499 2 SEGDGTQDIVDKSSEK Unmodified 1693.7643 0.76425257 1201 Q5UIP0-2;Q5UIP0 RIF1 Telomere-associated protein RIF1 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 62.464 54.894 3 0.0074805 3 38434 20150910_Q1_SA_NiHu_Masterprac_group13_B 46.89 39.428 6296800 677410 0 1976700 690490 1084100 1868200 6751 1201 6656 29508;29509;29510;29511;29512 19500;19501;19502 19500 3 SEGELLER Unmodified 931.46108 0.4610751 2 A1X283 SH3PXD2B SH3 and PX domain-containing protein 2B yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 70.272 67.188 2 0.0083162 2 46840 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.136 38.658 3790200 849760 192020 0 521510 0 2226900 6752 2 6657 29513;29514;29515;29516 19503;19504 19503 2 SEGFKAGDKTLTPR Unmodified 1505.7838 0.78380622 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 72.538 63.832 3 0.0044219 5 50337 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.456 37.297 17726000 4144800 2733700 4643400 0 1587700 4616200 6753 919 6658 29517;29518;29519;29520;29521;29522 19505;19506;19507;19508;19509 19507 5 SEHPGLSIGDTAK Unmodified 1310.6466 0.64664404 315 D6R9A6;P26583 HMGB2 High mobility group protein B2 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 81.785 73.314 3 0.0086219 3 50839 20150910_Q1_SA_NiHu_Masterprac_group13_B 55.196 25.645 5630400 1629800 0 507560 1249300 1228900 1014700 6754 315 6659 29523;29524;29525;29526;29527 19510;19511;19512 19510 3 SEIAHRFKDLGEEHFK Unmodified 1941.9697 0.96970951 294 CON__P02769 yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 2 2 1 109.91 100.62 3;4 0.0013274 2 68523 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.156 59.974 13369000 0 0 1015300 5816100 2324500 4213400 + 6755 294 6660 29528;29529;29530;29531;29532;29533 19513;19514 19514 1 SEICTEEPQKQK Unmodified 1475.6926 0.69260795 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 1 2 2 43.577 37.946 2;3 0.0084877 5 26832 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.085 53.883 7259100 691040 1061100 2632700 407160 813320 1653800 6756 1325 6661 29534;29535;29536;29537;29538;29539;29540;29541;29542;29543 19515;19516;19517;19518;19519 19519 5 SEIEYYAMLAK Oxidation (M) 1332.6272 0.62715415 342 E5RI99;P62888 RPL30 60S ribosomal protein L30 yes no 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 3 1 134.02 121.96 2 3.7995E-86 8 81885 20150910_Q1_SA_NiHu_Masterprac_group15_C 152.69 110.45 1328900000 618020000 46279000 28878000 195670000 381220000 58795000 6757 342 6662 29544;29545;29546;29547;29548;29549;29550;29551;29552 19520;19521;19522;19523;19524;19525;19526;19527 19522 31 8 SEIEYYAMLAK Unmodified 1316.6322 0.63223953 342 E5RI99;P62888 RPL30 60S ribosomal protein L30 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching 3 1 3 1 132.69 119.86 2 4.239E-65 7 79632 20150910_Q1_SA_NiHu_Masterprac_group10_C 139.15 99.28 2693900000 227750000 0 0 2079300000 385640000 1277100 6758 342 6662 29553;29554;29555;29556;29557;29558;29559;29560 19528;19529;19530;19531;19532;19533;19534 19534 7 SEIIDEKGPVMSK Unmodified 1431.7279 0.72793082 1488 Q9H410;Q5JW53 DSN1 Kinetochore-associated protein DSN1 homolog yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 99.057 89.607 3 0.0077701 1 61377 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.04 45.277 1311500 0 0 0 0 429430 882110 6759 1488 6663 29561;29562 19535 19535 1 SEISENTDASGK Unmodified 1236.547 0.54698957 107 F8VQE1;Q9UHB6-2;B4DN52;Q9UHB6;Q9UHB6-4;F8VRN8 LIMA1 LIM domain and actin-binding protein 1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 42.967 33.292 2 0.0079543 1 26862 20150910_Q1_SA_NiHu_Masterprac_group13_C 61.11 30.971 418400 0 0 418400 0 0 0 6760 107 6664 29563 19536 19536 1 SEKGVIQVYDLGQDGQGMSR Unmodified 2166.0375 0.037531078 100 E9PF10;O75694-2;B4DLT2;O75694 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.5 130.89 3 0.00011416 1 84358 20150910_Q1_SA_NiHu_Masterprac_group10_B 80.109 58.639 8053600 0 8053600 0 0 0 0 6761 100 6665 29564 19537 19537 1 SEKIPKESTTVTCTGEK Unmodified 1893.9354 0.93535742 1353 Q92576-2;Q92576;E7EVH3;E9PE34;E7ER40 PHF3 PHD finger protein 3 yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 1 1 1 1 63.664 56.011 3;4 7.5408E-07 3 46160 20150910_Q1_SA_NiHu_Masterprac_group13_C 81.656 81.656 6590600 1984800 0 1951700 1400800 901080 352280 6762 1353 6666 29565;29566;29567;29568;29569;29570 19538;19539;19540 19539 2 SEKLKDLFDYSPPLHK Unmodified 1916.0044 0.0043636815 1563;452 Q9NYF8-2;Q9NYF8;E9PK09;E9PQN2;E9PKI6;Q9NYF8-3;E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 132.49 132.49 4 0.0089452 1 85508 20150910_Q1_SA_NiHu_Masterprac_group13_B 45.384 35.47 5462700 0 0 0 5462700 0 0 6763 1563;452 6667 29571 19541 19541 1 SEKLPEDLTVK Unmodified 1257.6816 0.68163256 415 F5H4I8;E9PCM7;F5H2R1;P37275;Q2KJ05;F5H8J0;F5H838;Q5VZ84;G3V1R3;F5H1R1;H0YME0;H0YKM9 ZEB1 Zinc finger E-box-binding homeobox 1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 1 103.31 95.473 2;3 7.5638E-20 4 63910 20150910_Q1_SA_NiHu_Masterprac_group10_B 119.03 77.919 7047500 0 1272400 1799200 1408900 545930 2021100 6764 415 6668 29572;29573;29574;29575;29576;29577 19542;19543;19544;19545 19545 4 SEKPLENGTGFQAQDISGQK Unmodified 2133.0338 0.033825909 945 P49792;E9PGT0 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 107.86 99.741 3 0.0020191 4 73104 20150910_Q1_SA_NiHu_Masterprac_group13_C 50.87 42.111 7292600 2078500 1968300 2436900 808960 0 0 6765 945 6669 29578;29579;29580;29581 19546;19547;19548;19549 19547 4 SELGNQSPSTSSR Unmodified 1348.6219 0.62188585 453 H0YD16;E9PKD1;Q5JTV8 TOR1AIP1 Torsin-1A-interacting protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 46.671 41.506 2 0.0065897 1 29595 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.116 42.739 1108500 0 268480 0 0 325290 514730 6766 453 6670 29582;29583;29584 19550 19550 1 SELVANNVTLPAGEQR Unmodified 1696.8744 0.87441214 913;914 P42166;P42167;P42167-2;G5E972 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 128.68 118.86 2 2.0587E-164 5 77271 20150910_Q1_SA_NiHu_Masterprac_group10_C 160.03 109.92 33542000 13402000 4551600 9670900 0 0 5917400 6767 913;914 6671 29585;29586;29587;29588 19551;19552;19553;19554;19555 19555 4 SELVANNVTLPAGEQRK Unmodified 1824.9694 0.96937516 913;914 P42166;P42167;P42167-2;G5E972 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 113.41 105.09 2;3 5.9592E-14 9 76229 20150910_Q1_SA_NiHu_Masterprac_group13_C 99.344 99.344 473150000 80437000 120980000 56351000 50787000 36240000 128360000 6768 913;914 6672 29589;29590;29591;29592;29593;29594;29595;29596;29597;29598;29599 19556;19557;19558;19559;19560;19561;19562;19563;19564 19557 9 SEMTPEELQK Unmodified 1190.5489 0.54890383 990 P62316 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 85.625 76.936 2 0.0086142 2 52820 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.916 50.347 11741000 1977100 0 0 0 4038300 5726100 6769 990 6673 29600;29601;29602 19565;19566 19565 2 SENGLQNESLSSTHHTDGLSK Unmodified 2240.0305 0.030531445 361 Q9GZR1-2;Q9GZR1;E7EQN6 SENP6 Sentrin-specific protease 6 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 2 2 2 82.33 75.378 3;4 0.0015888 3 52135 20150910_Q1_SA_NiHu_Masterprac_group10_B 50.493 38.113 10548000 0 2848000 3073400 0 0 4626900 6770 361 6674 29603;29604;29605;29606;29607;29608 19567;19568;19569 19569 3 SENPRGPLVLPAGGGAQDESGSRIHHK Unmodified 2765.3957 0.3957365 1161 Q2TAK8;Q2TAK8-2;H0YFM5 MUM1 PWWP domain-containing protein MUM1 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 1 2 2 94.487 86.064 4;5 2.6552E-15 4 65384 20150910_Q1_SA_NiHu_Masterprac_group13_C 79.172 49.698 53267000 0 9445900 20199000 2752300 7159800 13710000 6771 1161 6675 29609;29610;29611;29612;29613;29614;29615;29616;29617 19570;19571;19572;19573 19571 4 SENVDVGKPALGK Unmodified 1312.6987 0.69867961 1345 Q8WYP5;Q8WYP5-3;Q8WYP5-2 AHCTF1 Protein ELYS yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 2 2 78.082 70.463 2;3 4.6014E-34 12 55906 20150910_Q1_SA_NiHu_Masterprac_group13_C 120.84 83.184 51937000 12095000 7336600 8731100 6134800 9716600 7923400 6772 1345 6676 29618;29619;29620;29621;29622;29623;29624;29625;29626;29627;29628;29629;29630;29631 19574;19575;19576;19577;19578;19579;19580;19581;19582;19583;19584;19585 19576 12 SEPKPGLPEDLQK Unmodified 1436.7511 0.75110911 225 C9J384;E9PHS3;Q9BQ75 CMSS1 Protein CMSS1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 2 2 2 98.298 90.427 2;3 0.0093598 6 67868 20150910_Q1_SA_NiHu_Masterprac_group13_C 56.414 39.391 161960000 3167000 24125000 26198000 20564000 38989000 48918000 6773 225 6677 29632;29633;29634;29635;29636;29637;29638;29639;29640;29641;29642 19586;19587;19588;19589;19590;19591 19586 6 SEPVKEESSELEQPFAQDTSSVGPDRK Unmodified 2975.3996 0.39960364 1097;1137 Q14151;A8MXT5;C9JPX0;Q15424;F5H1L1;F5H0H3;F5GZU3;B7Z2F6 SAFB2;SAFB Scaffold attachment factor B2;Scaffold attachment factor B1 no no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 128.34 118.84 3;4 2.8573E-190 12 79434 20150910_Q1_SA_NiHu_Masterprac_group15_C 148.17 140.87 732940000 320740000 22113000 113180000 17633000 171750000 87533000 6774 1097;1137 6678 29643;29644;29645;29646;29647;29648;29649;29650;29651;29652;29653;29654 19592;19593;19594;19595;19596;19597;19598;19599;19600;19601;19602;19603 19600 12 SEQEFSFDTPADR Unmodified 1527.6478 0.64776625 547 Q99590-2;F8VXG7;Q99590 SCAF11 Protein SCAF11 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 127.56 118.08 2 3.4053E-24 6 77503 20150910_Q1_SA_NiHu_Masterprac_group10_C 116.63 90.403 25192000 8610500 2442200 6090900 1310700 2838400 3899400 6775 547 6679 29655;29656;29657;29658;29659;29660 19604;19605;19606;19607;19608;19609 19609 6 SEQPTLVTASK Unmodified 1159.6085 0.60846762 1279 Q8IWA0 WDR75 WD repeat-containing protein 75 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 75.293 66.845 2 0.019417 1 46712 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.205 34.149 1616100 0 0 0 0 371210 1244900 6776 1279 6680 29661;29662 19610 19610 1 SEREVSTAPAGTDMPAAK Acetyl (Protein N-term) 1858.8731 0.87309151 745 O75530-3;O75530;O75530-2;F5GY72;E9PJK2 EED Polycomb protein EED yes no 1 0 1 By MS/MS By matching By matching By matching By matching By matching 1 103.74 93.366 2 0.0053902 1 62976 20150910_Q1_SA_NiHu_Masterprac_group10_C 47.68 35.949 2990100 2990100 0 0 0 0 0 6777 745 6681 29663 19611 19611 1 SERPSHPLYEPEPEPR Unmodified 1918.9173 0.91733959 1199 Q5TGY3 AHDC1 AT-hook DNA-binding motif-containing protein 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 2 83.547 75.836 3;4 0.012487 2 52355 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.252 17.22 5317000 0 985270 993600 0 406220 2931900 6778 1199 6682 29664;29665;29666;29667;29668 19612;19613 19612 2 SERSSSGLLEWESK Unmodified 1593.7635 0.76346471 838 P14866;A6NIT8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 3 3 122.17 111.64 2;3 3.0464E-198 9 80297 20150910_Q1_SA_NiHu_Masterprac_group13_C 167.92 95.236 586660000 57918000 66649000 201240000 112020000 16410000 132420000 6779 838 6683 29669;29670;29671;29672;29673;29674;29675;29676;29677;29678;29679;29680;29681;29682;29683;29684 19614;19615;19616;19617;19618;19619;19620;19621;19622 19616 9 SERTESLEAGDDESK Unmodified 1651.7173 0.71730238 1188 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 48.271 40.713 3 0.020967 1 29096 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.314 42.314 1596400 249990 0 497470 0 295660 553250 6780 1188 6684 29685;29686;29687;29688 19623 19623 1 SERYVCAVTR Unmodified 1239.603 0.60300508 1642 Q9Y314 NOSIP Nitric oxide synthase-interacting protein yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 65.638 57.286 3 0.003091 2 40656 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.943 62.054 4925600 643130 941380 262390 0 700230 2378400 6781 1642 6685 29689;29690;29691;29692;29693 19624;19625 19624 2 SESALSCLSK Unmodified 1080.5121 0.51212439 588 G3V529;Q9GZR7;Q4V9L5;F5GYL3;F5H4V3 DDX24 ATP-dependent RNA helicase DDX24 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 90.56 81.837 2 0.0030558 2 56120 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.611 59.348 22758000 0 0 2540100 3331800 9201200 7685000 6782 588 6686 29694;29695;29696;29697 19626;19627 19626 2 SESALSCLSKQK Unmodified 1336.6657 0.66566492 588 G3V529;Q9GZR7;Q4V9L5;F5GYL3;F5H4V3 DDX24 ATP-dependent RNA helicase DDX24 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 78.254 70.634 2 1.1388E-192 6 49199 20150910_Q1_SA_NiHu_Masterprac_group10_C 174.72 127.49 27819000 8161500 3499200 4529900 3900300 4866100 2862400 6783 588 6687 29698;29699;29700;29701;29702;29703;29704 19628;19629;19630;19631;19632;19633 19631 6 SESFANYIDER Unmodified 1329.5837 0.58370943 936 P49454 CENPF Centromere protein F yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.04 130.43 2 0.001691 1 83817 20150910_Q1_SA_NiHu_Masterprac_group10_B 90.697 73.783 3535500 0 3535500 0 0 0 0 6784 936 6688 29705 19634 19634 1 SESHTDLTFSR Unmodified 1278.584 0.58404378 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 76.898 70.37 2;3 3.6261E-08 5 49010 20150910_Q1_SA_NiHu_Masterprac_group10_B 110.84 71.213 20357000 1494300 3043700 1361300 2198300 8172000 4087700 6785 578 6689 29706;29707;29708;29709;29710;29711;29712;29713;29714;29715 19635;19636;19637;19638;19639 19639 5 SESHTDLTFSRELTNDERK Unmodified 2264.0669 0.066916951 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 102.58 94.284 4 0.0011022 1 68599 20150910_Q1_SA_NiHu_Masterprac_group15_C 58.246 47.288 16046000 2684000 1705200 2304100 5354600 3204300 794310 6786 578 6690 29716;29717;29718;29719;29720;29721 19640 19640 1 SETAPAAPAAAPPAEKAPVK Acetyl (Protein N-term) 1915.0051 0.005091963 843 P16403 HIST1H1C Histone H1.2 yes yes 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 103.87 95.454 2 0.00012461 7 64924 20150910_Q1_SA_NiHu_Masterprac_group10_C 79.565 66.725 28024000 10041000 2845300 2588100 1511500 8031900 3005800 6787 843 6691 29722;29723;29724;29725;29726;29727 19641;19642;19643;19644;19645;19646;19647 19645 7 SETAPAAPAAAPPAEKAPVKK Acetyl (Protein N-term) 2043.1001 0.10005498 843 P16403 HIST1H1C Histone H1.2 yes yes 1 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 87.784 81.778 3 2.7932E-06 5 62503 20150910_Q1_SA_NiHu_Masterprac_group13_C 65.765 57.347 542650000 311170000 60718000 65940000 39977000 0 64851000 6788 843 6692 29728;29729;29730;29731;29732 19648;19649;19650;19651;19652 19649 5 SETAPAAPAAPAPAEKTPVK Acetyl (Protein N-term) 1945.0157 0.015656649 818 P10412 HIST1H1E Histone H1.4 yes yes 1 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 96.716 95.812 2 0.00050166 1 64263 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.372 46.482 2253600 0 1071400 0 1182200 0 0 6789 818 6693 29733;29734 19653 19653 1 SETAPAAPAAPAPAEKTPVKK Unmodified 2031.1001 0.10005498 818 P10412 HIST1H1E Histone H1.4 yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 1 77.609 69.669 3;4 0.0005589 4 49766 20150910_Q1_SA_NiHu_Masterprac_group10_C 54.964 40.573 14946000 4708900 2522200 4170500 2256400 1288300 0 6790 818 6694 29735;29736;29737;29738;29739;29740;29741;29742 19654;19655;19656;19657 19657 4 SETAPAAPAAPAPAEKTPVKK Acetyl (Protein N-term) 2073.1106 0.11061967 818 P10412 HIST1H1E Histone H1.4 yes yes 1 0 2 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 91.763 82.923 3 2.8991E-15 5 56604 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.753 93.753 582510000 257280000 0 45433000 51073000 150640000 78094000 6791 818 6694 29743;29744;29745;29746;29747;29748 19658;19659;19660;19661;19662 19659 5 SETAPAETATPAPVEKSPAK Unmodified 1981.0004 0.0004005156 842 P16401 HIST1H1B Histone H1.5 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 2 1 1 78.523 71.143 3 0.00034648 4 49293 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.764 51.486 3843600 0 795330 789900 692400 977290 588680 6792 842 6695 29749;29750;29751;29752;29753;29754 19663;19664;19665;19666 19665 4 SETAPAETATPAPVEKSPAK Acetyl (Protein N-term) 2023.011 0.010965202 842 P16401 HIST1H1B Histone H1.5 yes yes 1 0 1 By MS/MS By matching By matching By matching By matching By matching 1 99.032 89.158 2 0.005223 1 60702 20150910_Q1_SA_NiHu_Masterprac_group10_C 46.494 35.879 29047000 29047000 0 0 0 0 0 6793 842 6695 29755 19667 19667 1 SETAPAETATPAPVEKSPAKK Acetyl (Protein N-term) 2151.1059 0.10592822 842 P16401 HIST1H1B Histone H1.5 yes yes 1 0 2 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 79.556 76.4 3 1.5324E-05 2 52406 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.21 52.031 36180000 23336000 229060 0 5537900 0 7077300 6794 842 6696 29756;29757;29758;29759 19668;19669 19668 2 SETCNEDLAGTTDEK Unmodified 1668.6785 0.67847403 196 B7Z8R4;Q15723-4;E9PCX3;Q15723-2;Q15723-3;Q15723-1;Q15723;D6R9B1 ELF2 ETS-related transcription factor Elf-2 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 63.045 56.366 2 0.00047238 5 45824 20150910_Q1_SA_NiHu_Masterprac_group13_C 71.781 45.132 6326400 0 1382500 1120300 626220 1122600 2074800 6795 196 6697 29760;29761;29762;29763;29764 19670;19671;19672;19673;19674 19673 5 SETRENGVTDDLDAPKAK Unmodified 1944.9389 0.93886289 515 F5H3H6;Q9BQ39 DDX50 ATP-dependent RNA helicase DDX50 yes no 0 0 2 By MS/MS By matching By matching By MS/MS By matching By matching 2 1 2 2 2 2 73.238 65.445 3;4 0.0015314 3 45562 20150910_Q1_SA_NiHu_Masterprac_group13_B 65.905 53.015 18327000 2895200 2825900 3242700 2159600 3454700 3749400 6796 515 6698 29765;29766;29767;29768;29769;29770;29771;29772;29773;29774;29775 19675;19676;19677 19676 3 SETSKPGPSGLQAK Unmodified 1385.7151 0.71505795 1122 Q14CA3;Q14669;B4DYJ6;G5E9G6;H7C1L9 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 45.896 40.507 2;3 3.6841E-08 4 28916 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.732 77.17 32496000 3918300 4631900 10518000 3038300 3833000 6555800 6797 1122 6699 29776;29777;29778;29779;29780;29781;29782;29783;29784;29785;29786;29787 19678;19679;19680;19681 19679 4 SETTSEHTCQLCGGWFDTK Unmodified 2242.9259 0.92593172 1492 Q9H582-2;Q9H582;F5GWV4 ZNF644 Zinc finger protein 644 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.07 130.46 3 0.00052836 1 83902 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.998 51.458 8518100 0 8518100 0 0 0 0 6798 1492 6700 29788 19682 19682 1 SEVIEDSDVETVSEK Unmodified 1664.7629 0.76285559 1176 Q56NI9;E5RFE4 ESCO2 N-acetyltransferase ESCO2 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 105.73 97.807 2 1.1746E-20 7 71886 20150910_Q1_SA_NiHu_Masterprac_group13_C 108.63 108.63 29184000 0 7863700 8624100 3692500 3806900 5197000 6799 1176 6701 29789;29790;29791;29792;29793 19683;19684;19685;19686;19687;19688;19689 19684 7 SEVIEDSDVETVSEKK Unmodified 1792.8578 0.8578186 1176 Q56NI9;E5RFE4 ESCO2 N-acetyltransferase ESCO2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 2 97.46 88.164 2;3 2.5576E-18 7 66537 20150910_Q1_SA_NiHu_Masterprac_group13_C 102.64 102.64 19571000 2610600 2074400 3700700 851700 3174100 7159700 6800 1176 6702 29794;29795;29796;29797;29798;29799;29800;29801;29802 19690;19691;19692;19693;19694;19695;19696 19691 7 SEVPCAPMPK Unmodified 1114.5151 0.51510128 1428 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 97.764 88.56 2 0.020661 2 59962 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.076 36.289 6502900 1221900 1570600 1259700 740270 1710400 0 6801 1428 6703 29803;29804;29805;29806;29807 19697;19698 19698 2 SEVSTDLIQANPK Unmodified 1400.7147 0.7147236 1524 Q9NPC7-3;Q9NPC7-2;Q9NPC7 MYNN Myoneurin yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 112.66 103.53 2 0.0015287 5 68554 20150910_Q1_SA_NiHu_Masterprac_group10_B 88.224 69.402 23477000 3397000 4245800 4004600 2673100 2395200 6761700 6802 1524 6704 29808;29809;29810;29811;29812;29813 19699;19700;19701;19702;19703 19702 5 SEVSTDLIQANPKQGALAK Unmodified 1969.048 0.04801941 1524 Q9NPC7-3;Q9NPC7-2;Q9NPC7 MYNN Myoneurin yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 130.04 114.35 3 0.00082142 1 75604 20150910_Q1_SA_NiHu_Masterprac_group10_C 62.525 47.932 3204600 3204600 0 0 0 0 0 6803 1524 6705 29814 19704 19704 1 SEVVESTTESQDKENSHQK Unmodified 2160.9771 0.97709889 1201 Q5UIP0-2;Q5UIP0 RIF1 Telomere-associated protein RIF1 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 2 2 38.974 33.487 3;4 0.0027822 6 27024 20150910_Q1_SA_NiHu_Masterprac_group13_C 50.376 39.015 17362000 1527600 1101200 5766200 1604400 1978700 5383500 6804 1201 6706 29815;29816;29817;29818;29819;29820;29821;29822;29823 19705;19706;19707;19708;19709;19710 19707 6 SEYIETASGNK Unmodified 1197.5513 0.55134667 632 H3BUD2;H3BS05;H3BQA4;H3BN51;H3BR94;Q9BTE1 DCTN5 Dynactin subunit 5 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 59.267 52.674 2 0.0033321 5 37734 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.182 49.307 4703300 574030 528730 1314700 555470 612020 1118400 6805 632 6707 29824;29825;29826;29827;29828;29829 19711;19712;19713;19714;19715 19713 5 SEYSVHSSLASK Unmodified 1293.6201 0.62009493 410 F5GZ80;E9PC26;F5GXI5;O43683 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 60.406 59.252 2 0.0024886 2 41753 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.392 37.065 627470 0 0 0 0 0 627470 6806 410 6708 29830 19716;19717 19717 2 SFAGNLNTYK Unmodified 1113.5455 0.54547343 1031 Q01813;H0Y3P8;Q5VSR7;B1APP6 PFKP 6-phosphofructokinase type C yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 107.71 95.703 2 0.025569 1 64126 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.198 33.135 11669000 1536900 2888400 2574400 0 4669200 0 6807 1031 6709 29831;29832;29833;29834 19718 19718 1 SFAQSSGLTK Unmodified 1024.5189 0.51892433 194 B7Z7H3;Q969J2;H7C1Y5;H7BY15 ZKSCAN4 Zinc finger protein with KRAB and SCAN domains 4 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 68.343 65.259 2 0.0095763 1 45407 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.566 54.533 9759700 1547700 2061300 0 1992200 0 4158400 6808 194 6710 29835;29836;29837;29838 19719 19719 1 SFATASHRNTEEEGLKYK Unmodified 2067.0021 0.0021318501 1563;452 Q9NYF8-2;Q9NYF8;E9PK09;E9PQN2;E9PKI6;Q9NYF8-3;E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1 74.287 65.752 4 1.9387E-08 6 45905 20150910_Q1_SA_NiHu_Masterprac_group13_B 93.106 66.556 122010000 29769000 7771600 18457000 17690000 24592000 23728000 6809 1563;452 6711 29839;29840;29841;29842;29843;29844;29845;29846 19720;19721;19722;19723;19724;19725 19720 6 SFCISTLANTK Unmodified 1240.6122 0.61217279 1219 Q69YH5;E9PEI0 CDCA2 Cell division cycle-associated protein 2 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 132.66 120.52 2 0.0042884 2 85070 20150910_Q1_SA_NiHu_Masterprac_group10_B 77.674 28.614 19355000 0 7685300 10786000 0 883480 0 6810 1219 6712 29847;29848;29849 19726;19727 19727 1 SFDPSAREPPGSTAGLPQEPK Unmodified 2167.0546 0.054561351 1447 Q9BTC0 DIDO1 Death-inducer obliterator 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 120.88 111.31 3 0.0029775 4 79565 20150910_Q1_SA_NiHu_Masterprac_group13_C 47.729 33.383 15449000 3353000 2722400 3629900 855000 360850 4528300 6811 1447 6713 29850;29851;29852;29853;29854;29855 19728;19729;19730;19731 19728 4 SFEAPATINSASLHPEK Unmodified 1797.8897 0.88972785 55 B0AZV0;Q9Y3F4;B4DNJ6 STRAP Serine-threonine kinase receptor-associated protein yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 127.94 117.55 2;3 2.9357E-13 6 76782 20150910_Q1_SA_NiHu_Masterprac_group10_C 95.662 70.053 27148000 13429000 2871400 4471000 890770 1698200 3787400 6812 55 6714 29856;29857;29858;29859;29860;29861;29862 19732;19733;19734;19735;19736;19737 19736 6 SFFSVESGTK Unmodified 1087.5186 0.51858998 1118 Q14966-3;Q14966;Q14966-4;Q14966-2;C9JBI6;F5H330 ZNF638 Zinc finger protein 638 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 117.93 113.37 2 0.010869 1 77373 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.2 52.542 1197400 0 0 0 0 0 1197400 6813 1118 6715 29863 19738 19738 1 SFGQFNPGCVER Unmodified 1396.6194 0.61938343 0 D6R9D6;A0AV96-2;B7Z8Z7;A0AV96 RBM47 RNA-binding protein 47 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 127.65 124.86 2 1.7162E-38 1 84592 20150910_Q1_SA_NiHu_Masterprac_group15_B 130.69 116.24 9438800 0 1987200 0 0 0 7451600 6814 0 6716 29864;29865 19739 19739 1 SFGRGSTLIQHQR Unmodified 1485.7801 0.78005825 646 H3BS42;Q9H5H4;B7Z2Y7 ZNF768 Zinc finger protein 768 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 70.472 63.145 3 0.0034634 5 43593 20150910_Q1_SA_NiHu_Masterprac_group10_C 63.662 18.382 7980900 950110 920050 1968100 849520 1634700 1658400 6815 646 6717 29866;29867;29868;29869;29870;29871 19740;19741;19742;19743;19744 19744 5 SFGSTCQLSEK Unmodified 1242.5551 0.55505184 655 P11388;H7BXX8;P11388-2;P11388-3;P11388-4;C9J5P2 TOP2A DNA topoisomerase 2-alpha yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 78.32 72.495 2 0.0028426 5 50299 20150910_Q1_SA_NiHu_Masterprac_group15_B 85.522 66.565 26162000 969480 4586600 4368300 2147800 0 14090000 6816 655 6718 29872;29873;29874;29875;29876 19745;19746;19747;19748;19749 19746 5 SFGSTCQLSEKFIK Unmodified 1630.8025 0.80249275 655 P11388;H7BXX8;P11388-2;P11388-3;P11388-4;C9J5P2 TOP2A DNA topoisomerase 2-alpha yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 131.5 122.41 3 0.00027913 3 82777 20150910_Q1_SA_NiHu_Masterprac_group13_C 74.537 47.879 14613000 0 6564000 4765200 1991400 1292700 0 6817 655 6719 29877;29878;29879;29880 19750;19751;19752 19751 2 SFHKPVTSYQEACSIPGIGK Unmodified 2205.0888 0.088838367 1183 Q5JQP8;Q9HAJ3;Q9UGP5;Q5JQN9 POLL DNA polymerase lambda yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 130.48 114.8 4 0.0027881 1 76132 20150910_Q1_SA_NiHu_Masterprac_group10_C 52.731 35.806 3911200 3911200 0 0 0 0 0 6818 1183 6720 29881 19753 19753 0 SFHTYDVQK Unmodified 1123.5298 0.52982336 1331 Q8NI36;D6R922 WDR36 WD repeat-containing protein 36 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 60.41 59.256 2 1.4318E-16 1 41756 20150910_Q1_SA_NiHu_Masterprac_group15_B 125.71 80.733 0 0 0 0 0 0 0 6819 1331 6721 29882 19754 19754 1 SFIPKDNQNFCVPCYEK Unmodified 2144.9659 0.96594604 1101 Q14192 FHL2 Four and a half LIM domains protein 2 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.97 131.37 3 0.026715 1 84831 20150910_Q1_SA_NiHu_Masterprac_group10_B 38.546 23.399 4167000 0 4167000 0 0 0 0 6820 1101 6722 29883 19755 19755 1 SFIQSSELTQHQR Unmodified 1559.7692 0.76921879 1586 Q9UEG4 ZNF629 Zinc finger protein 629 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 101.55 94.986 2 0.01657 1 64853 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.659 36.576 2667000 0 0 0 357100 395070 1914800 6821 1586 6723 29884;29885;29886 19756 19756 1 SFISPIPSK Unmodified 974.54368 0.54368251 1591 Q9UGU0-2;Q9UGU0 TCF20 Transcription factor 20 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 123 121.17 2 0.0084728 1 82006 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.258 15.879 1951600 0 452690 0 528580 0 970290 6822 1591 6724 29887;29888;29889 19757 19757 1 SFISSGELNK Unmodified 1080.5451 0.54513908 1524 Q9NPC7-3;Q9NPC7-2;Q9NPC7 MYNN Myoneurin yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 1 1 1 1 1 106.81 97.66 2 0.0057609 6 65500 20150910_Q1_SA_NiHu_Masterprac_group10_C 86.344 62.123 22955000 6421100 1843300 3119800 3640600 4554100 3376600 6823 1524 6725 29890;29891;29892;29893;29894;29895;29896 19758;19759;19760;19761;19762;19763 19763 6 SFLKGLSDKQR Unmodified 1277.7092 0.70918471 1439 Q9BQ69 MACROD1 O-acetyl-ADP-ribose deacetylase MACROD1 yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 82.951 77.737 3 0.01581 1 53222 20150910_Q1_SA_NiHu_Masterprac_group10_B 73.9 50.147 4939900 0 1740300 1967500 928410 0 303650 6824 1439 6726 29897;29898;29899;29900 19764 19764 1 SFLQRVNASPAGR Unmodified 1401.7477 0.74769548 1300 Q8N554-2;Q8N554;H3BPT7;H3BTT0;H3BTK0 ZNF276 Zinc finger protein 276 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 103.65 93.948 3 0.0010613 1 64260 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.861 64.107 6754800 0 1262800 761760 0 1401100 3329200 6825 1300 6727 29901;29902;29903;29904 19765 19765 1 SFMMEVKDPNMK Unmodified 1455.656 0.65602821 1255 Q7Z6E9;Q7Z6E9-2;Q7Z6E9-4;H3BSK8;H3BUN0 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 124.33 119.56 3 0.027332 1 81144 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.948 34.503 690030 0 0 0 0 0 690030 6826 1255 6728 29905 19766 19766 1 SFNHNAHLTVHK Unmodified 1403.7058 0.70583067 847 P17098 ZNF8 Zinc finger protein 8 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 50.236 42.992 3 0.024127 2 35307 20150910_Q1_SA_NiHu_Masterprac_group13_C 47.991 16.843 1854000 0 543720 1310300 0 0 0 6827 847 6729 29906;29907 19767;19768 19767 2 SFNYSPNSSTSEVSSTSASK Unmodified 2065.9076 0.90762234 1202 Q5VT52-3;Q5VT52;B4E2Q6;Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 103.33 93.727 2 0.0081901 1 63985 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.592 41.278 5067000 0 1150900 1841900 0 745840 1328300 6828 1202 6730 29908;29909;29910;29911 19769 19769 0 SFPIVTEK Unmodified 919.50148 0.50148335 1176 Q56NI9;E5RFE4;E5RFP7;E5RIE3 ESCO2 N-acetyltransferase ESCO2 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 112.41 103.36 2 0.039944 1 75367 20150910_Q1_SA_NiHu_Masterprac_group13_C 68.224 16.878 22209000 1864600 3485300 4551500 1997200 1349100 8961400 6829 1176 6731 29912;29913;29914;29915;29916;29917 19770 19770 1 SFQDYTGQK Unmodified 1072.4825 0.48253882 141 Q9NP64-2;B4DY38;Q9NP64;E7EPF0 ZCCHC17 Nucleolar protein of 40 kDa yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 69.858 64.906 2 0.021781 2 45792 20150910_Q1_SA_NiHu_Masterprac_group10_B 68.846 20.245 7800100 0 1521500 0 1031400 1913400 3333800 6830 141 6732 29918;29919;29920;29921 19771;19772 19772 2 SFQQCAGFIR Unmodified 1212.571 0.57097667 1302 Q8N5C6;Q8N5C6-2;B7Z6X7 SRBD1 S1 RNA-binding domain-containing protein 1 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 122.07 112.6 2 0.0093219 3 74747 20150910_Q1_SA_NiHu_Masterprac_group10_C 76.228 47.058 26463000 3014300 2447900 2005800 1761000 8171400 9063100 6831 1302 6733 29922;29923;29924;29925;29926;29927 19773;19774;19775 19775 3 SFQQSSLSR Unmodified 1038.5094 0.50942227 52 P43243;A8MXP9;D6REM6;D6R991;Q68E03;D6RB45;D6R9F3;D6RBS2;D6RCM3;D6REK4;D6R8Z5 MATR3;DKFZp686L22104 Matrin-3 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 66.737 56.685 2 0.032961 1 45498 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.184 27.643 15370000 307790 5033800 6058600 0 3970200 0 6832 52 6734 29928;29929;29930;29931 19776 19776 1 SFQTRDNQGILYEAAPTSTLTCDSGPQKQK Unmodified 3340.5994 0.59938285 346 E7EMG6;Q8IV63-2;Q8IV63-3;Q8IV63 VRK3 Inactive serine/threonine-protein kinase VRK3 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 131.16 130.56 4 2.8686E-05 1 83995 20150910_Q1_SA_NiHu_Masterprac_group10_B 41.746 31.643 13971000 0 13971000 0 0 0 0 6833 346 6735 29932 19777 19777 1 SFRHCTASTLPK Unmodified 1403.698 0.6979681 1093 Q14008-2;Q14008;Q14008-3 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 57.469 50.073 3 0.010013 1 35686 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.116 41.377 1721000 0 0 0 0 777990 943020 6834 1093 6736 29933;29934 19778 19778 1 SFRQLSHLQQHTR Unmodified 1636.8546 0.85462017 555 Q8TF68-3;F8W6Q3;Q8TF68-2;Q8TF68;E9PHB3;Q5T0B9 ZNF384;ZNF362 Zinc finger protein 384;Zinc finger protein 362 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 68.219 61.008 4 0.0017718 6 48485 20150910_Q1_SA_NiHu_Masterprac_group15_C 74.133 52.057 26907000 3815700 962310 3064700 3571900 6904900 8587400 6835 555 6737 29935;29936;29937;29938;29939;29940 19779;19780;19781;19782;19783;19784 19782 6 SFRQMSDLVK Unmodified 1209.6176 0.61759251 1408 Q96MX3;E9PQ92;E9PJ50 ZNF48 Zinc finger protein 48 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 112.72 103.79 3 1.3652E-05 4 75682 20150910_Q1_SA_NiHu_Masterprac_group13_C 111.86 70.692 9491000 1798800 1674700 1450300 1845200 283270 2438700 6836 1408 6738 29941;29942;29943;29944;29945;29946 19785;19786;19787;19788 19786 4 SFRYENESLQNGRK Unmodified 1726.8387 0.83869534 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 2 2 1 2 2 73.616 65.567 3;4 8.9877E-05 2 45701 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.46 74.491 18226000 423400 3563800 2650600 566800 2849400 8172200 6837 919;920 6739 29947;29948;29949;29950;29951;29952;29953;29954;29955;29956 19789;19790 19789 2 SFSCPEPACGK Unmodified 1238.506 0.50599315 374 H0YDF5;H0YCH4;Q9BU19-3;E7ESF3;Q9BU19-2;Q9BU19;Q9BU19-5 ZNF692 Zinc finger protein 692 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 73.739 64.765 2 0.0037255 2 45151 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.916 71.809 4512800 0 768570 1434900 0 639400 1670000 6838 374 6740 29957;29958;29959;29960;29961 19791;19792 19792 2 SFSEFGK Unmodified 800.37047 0.37046918 715 O43390;O43390-2;E7ETM7;Q2L7G6 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 2 1 91.447 74.905 1;2 3.388E-08 3 58538 20150910_Q1_SA_NiHu_Masterprac_group13_C 124.59 100.39 8205700 0 0 4013700 0 4192100 0 6839 715 6741 29962;29963;29964 19793;19794;19795 19793 3 SFSHSFSALAK Unmodified 1180.5877 0.58767259 1052 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 110.23 99.704 2 0.0048417 1 67935 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.962 36.967 6638200 0 0 697880 0 0 5940300 6840 1052 6742 29965;29966 19796 19796 1 SFSNSSSFGVHHR Unmodified 1447.6593 0.65927441 1206 Q5VV52-2;Q5VV50;Q5VV52;Q5VV52-3 ZNF691 Zinc finger protein 691 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 64.974 58.076 3 0.0018599 2 41032 20150910_Q1_SA_NiHu_Masterprac_group10_B 68.676 47.616 7017500 0 680930 1626800 506830 938090 3264900 6841 1206 6743 29967;29968;29969;29970;29971 19797;19798 19798 2 SFSQSGLIQHQR Unmodified 1386.7004 0.70041094 714 O43309 ZSCAN12 Zinc finger and SCAN domain-containing protein 12 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 78.092 76.737 2 0.023396 1 52939 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.233 61.233 772820 0 0 0 0 0 772820 6842 714 6744 29972 19799 19799 0 SFSQSSNLITHVR Unmodified 1474.7528 0.75284044 1586 Q9UEG4 ZNF629 Zinc finger protein 629 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 112.69 103.66 3 0.032358 1 70948 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.621 31.628 13357000 2165300 1829800 1489400 1086800 1485000 5300300 6843 1586 6745 29973;29974;29975;29976;29977;29978 19800 19800 1 SFSQSSSLSR Unmodified 1084.5149 0.51490158 1307 Q8N720;Q8N720-3 ZNF655 Zinc finger protein 655 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 62.755 55.929 2 0.0087566 3 41580 20150910_Q1_SA_NiHu_Masterprac_group10_C 79.201 57.456 8351100 1751400 740380 1342900 1227100 1671200 1618100 6844 1307 6746 29979;29980;29981;29982;29983;29984 19801;19802;19803 19803 3 SFSRPDHLNSHVR Unmodified 1550.7702 0.77022184 219 C6G496;P56270;G5E927;I3L2Z5;F5H7A6;H3BQI4 MAZ Myc-associated zinc finger protein yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 2 1 1 2 1 63.552 56.26 3 1.8956E-46 2 39524 20150910_Q1_SA_NiHu_Masterprac_group15_B 126.34 107.52 28876000 0 3798000 4269000 3188600 10004000 7615900 6845 219 6747 29985;29986;29987;29988;29989;29990;29991 19804;19805 19804 2 SFSRSDHLALHMK Unmodified 1527.7616 0.76163099 9 A2TJX0;B4DL96;Q13887 KLF5 Krueppel-like factor 5 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 86.918 79.306 3 0.033102 2 54661 20150910_Q1_SA_NiHu_Masterprac_group13_B 51.612 29.061 6741700 1001100 177370 769030 955750 1681900 2156500 6846 9 6748 29992;29993;29994;29995;29996;29997 19806;19807 19806 0 SFSRSPSDARQPHYGAPAPR Unmodified 2183.062 0.062046766 674;664 H7C561;H7C0N4 SF1 no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 67.242 66.087 4 0.016513 1 46002 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.687 32.159 1727300 0 0 0 0 0 1727300 6847 674;664 6749 29998 19808 19808 1 SFSTASAITPSVSR Unmodified 1409.7151 0.71505795 299 P13647;CON__P13647;F8VV57;E7EU87;CON__Q5XQN5;F8VU69 KRT5 Keratin, type II cytoskeletal 5 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 119.32 111.44 2 6.7963E-05 4 76090 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.307 61.302 29024000 1998500 2631500 0 13766000 1073600 9554400 + 6848 299 6750 29999;30000;30001;30002;30003 19809;19810;19811;19812 19809 4 SFSTASAITPSVSRTSFTSVSR Unmodified 2275.1444 0.14443899 299 P13647;CON__P13647;F8VV57;E7EU87;CON__Q5XQN5;F8VU69 KRT5 Keratin, type II cytoskeletal 5 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 132.49 124.65 3 0.0031886 3 78597 20150910_Q1_SA_NiHu_Masterprac_group10_C 47.726 22.541 43607000 13105000 0 0 30501000 0 0 + 6849 299 6751 30004;30005 19813;19814;19815 19814 3 SFSVSSNLINHQR Unmodified 1487.7481 0.74808942 1586 Q9UEG4 ZNF629 Zinc finger protein 629 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 2 1 1 126.26 109.65 2;3 0.0015009 4 79123 20150910_Q1_SA_NiHu_Masterprac_group13_C 81.676 62.4 5599900 3103800 0 1674500 0 821690 0 6850 1586 6752 30006;30007;30008;30009 19816;19817;19818;19819 19816 4 SFSYQLEALKSK Unmodified 1399.7347 0.73473076 1576 Q9P275;Q9P275-2;F5H3B9 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 1 2 1 1 2 130.51 119.38 2;3 0 8 85403 20150910_Q1_SA_NiHu_Masterprac_group15_B 225.63 172.62 92499000 22628000 6074100 20428000 3674800 4750800 34944000 6851 1576 6753 30010;30011;30012;30013;30014;30015;30016;30017;30018;30019 19820;19821;19822;19823;19824;19825;19826;19827 19823 8 SFTCDSCGFGFSCEK Unmodified 1787.6589 0.65894134 1633 Q9Y2K1;Q9Y2K1-2 ZBTB1 Zinc finger and BTB domain-containing protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.8 131.19 2 0.0027325 1 84677 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.477 61.537 3592000 0 3592000 0 0 0 0 6852 1633 6754 30020 19828 19828 1 SFTSSSPSSPSR Unmodified 1225.5575 0.55749468 257 H7BZX1;H7C1R7;H7BZK1;H7BXR3;E9PAS5;O94875-5;O94875-3;C9JKV9;O94875-2;G3XAI0;O94875-4;H7BXR4;E9PAW4;O94875-7;O94875 SORBS2 Sorbin and SH3 domain-containing protein 2 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 56.962 50.094 2 0.0042781 1 41151 20150910_Q1_SA_NiHu_Masterprac_group15_C 65.241 24.517 478910 0 0 0 126330 352580 0 6853 257 6755 30021;30022 19829 19829 1 SFVLNLGK Unmodified 876.5069 0.50690308 812 P09382 LGALS1 Galectin-1 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 133.25 131.4 2 0.014193 3 85952 20150910_Q1_SA_NiHu_Masterprac_group10_B 89.296 59.958 261810000 0 108570000 0 20196000 0 133050000 6854 812 6756 30023;30024;30025 19830;19831;19832 19832 3 SFVSISEATDCLVDFKK Unmodified 1944.9503 0.9502792 535 Q96RL1;F8VQY2;Q96RL1-3;F2Z2T8;Q96RL1-2;Q96RL1-4;H7BXP9 UIMC1 BRCA1-A complex subunit RAP80 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 133.75 133.15 3 0.025582 1 86865 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.331 38.333 0 0 0 0 0 0 0 6855 535 6757 30026 19833 19833 1 SFVSSNWAETPRLGK Unmodified 1677.8475 0.84746911 965 P54132;F5H7R6;H0YNU5 BLM Bloom syndrome protein yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 132.35 132.35 3 0.0024695 1 85354 20150910_Q1_SA_NiHu_Masterprac_group13_B 59.68 39.555 3067900 0 0 0 3067900 0 0 6856 965 6758 30027 19834 19834 1 SFYSSHYAR Unmodified 1116.4989 0.49885759 401 F8WF16;Q8NEY8-6;E9PAX8;F8W6A0;Q8NEY8-8;Q8NEY8-2;F8W0Q9;Q8NEY8-3;Q8NEY8;F8VPY7;F8VWU8;Q8NEY8-5 PPHLN1 Periphilin-1 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 69.067 62.788 2 0.0062481 2 44026 20150910_Q1_SA_NiHu_Masterprac_group13_B 104.01 74.844 3102000 468310 0 727310 618070 0 1288300 6857 401 6759 30028;30029;30030;30031 19835;19836 19835 2 SGAAHLCDSQETNCSTAGHSK Unmodified 2216.9175 0.9174923 1576 Q9P275;Q9P275-2;E9PEW0 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 43.313 37.573 4 0.010422 2 31791 20150910_Q1_SA_NiHu_Masterprac_group15_C 39.276 33.897 2266800 0 0 249510 321530 614220 1081500 6858 1576 6760 30032;30033;30034;30035 19837;19838 19838 2 SGAAHLCDSQETNCSTAGHSKTPPSGADSK Unmodified 3057.3152 0.31523886 1576 Q9P275;Q9P275-2;E9PEW0 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 1 2 57.186 48.958 4;5 5.0169E-05 5 40372 20150910_Q1_SA_NiHu_Masterprac_group13_C 47.73 45.838 15668000 2050200 3335300 4005500 929560 5347600 0 6859 1576 6761 30036;30037;30038;30039;30040;30041;30042;30043 19839;19840;19841;19842;19843 19840 2 SGAIMCENCMTTNQK Unmodified 1743.7048 0.70484567 170 Q86YP4;B5MC40;Q86YP4-2;B4DKZ7;F5H7D9;H7C3H1 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 90.316 82.62 2 0.022274 4 61569 20150910_Q1_SA_NiHu_Masterprac_group15_C 41.542 35.982 43091000 674480 5634300 12395000 630300 720020 23037000 6860 170 6762 30044;30045;30046;30047;30048;30049 19844;19845;19846;19847 19846 3 SGAIMCENCMTTNQK Oxidation (M) 1759.6998 0.69976029 170 Q86YP4;B5MC40;Q86YP4-2;B4DKZ7;F5H7D9;H7C3H1 GATAD2A Transcriptional repressor p66-alpha yes no 0 1 0 By matching By matching By matching By matching By matching By MS/MS 1 58.006 56.952 2 0.012256 1 40188 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.288 51.832 438930 0 0 0 0 0 438930 6861 170 6762 30050 19848 19848 15 1 SGAIMCENCMTTNQKK Unmodified 1871.7998 0.79980869 170 Q86YP4;B5MC40;Q86YP4-2;B4DKZ7;F5H7D9;H7C3H1 GATAD2A Transcriptional repressor p66-alpha yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 79.286 68.847 3 1.0175E-79 3 54860 20150910_Q1_SA_NiHu_Masterprac_group13_C 130.95 130.95 24064000 582760 0 8696600 0 505200 14279000 6862 170 6763 30051;30052;30053;30054 19849;19850;19851 19849 3 SGAISAIKAETK Unmodified 1174.6558 0.65575216 8 A2ABK4;A2ABK3;E9PD43;A2ABK2;A2ABK1;B4DUN1;P18615;B4DYX9 NELFE Negative elongation factor E yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 72.718 66.972 2 1.8707E-14 4 52216 20150910_Q1_SA_NiHu_Masterprac_group15_C 108.68 61.73 4770500 613790 1002800 885570 584400 0 1683900 6863 8 6764 30055;30056;30057;30058;30059;30060 19852;19853;19854;19855 19854 4 SGALPQQYPASGENKSK Unmodified 1760.8693 0.86932676 1594 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RJ97;E5RFF3;H0YC29 TRPS1 Zinc finger transcription factor Trps1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 67.978 60.767 3 0.016497 1 48086 20150910_Q1_SA_NiHu_Masterprac_group15_C 40.693 27.274 7616500 661660 1253800 2150100 703540 903110 1944400 6864 1594 6765 30061;30062;30063;30064;30065;30066 19856 19856 1 SGAQASSTPLSPTR Unmodified 1358.679 0.6790068 783 P02545;P02545-3;Q6UYC3;P02545-2;Q3BDU5;Q5TCJ4 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 68.245 61.034 2 5.8517E-05 6 48991 20150910_Q1_SA_NiHu_Masterprac_group13_C 91.845 68.091 22722000 1364100 3590100 3118100 1634200 2994500 10021000 6865 783 6766 30067;30068;30069;30070;30071;30072 19857;19858;19859;19860;19861;19862 19858 6 SGAQASSTPLSPTRITR Unmodified 1728.9119 0.91186028 783 P02545;P02545-3;Q6UYC3;P02545-2;Q3BDU5;Q5TCJ4 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 94.541 86.662 3 0.0030445 5 58834 20150910_Q1_SA_NiHu_Masterprac_group13_B 51.771 37.196 59604000 184180 13316000 9371600 3919700 10926000 21886000 6866 783 6767 30073;30074;30075;30076;30077;30078 19863;19864;19865;19866;19867 19863 5 SGASEANLIVAK Unmodified 1158.6245 0.62445203 919;920 P46013;F5H4V4;P46013-2;E7EN66 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 98.834 90.512 2 2.8832E-50 7 66401 20150910_Q1_SA_NiHu_Masterprac_group15_C 132.86 98.992 113440000 19349000 14400000 22398000 13092000 14762000 29441000 6867 919;920 6768 30079;30080;30081;30082;30083;30084;30085 19868;19869;19870;19871;19872;19873;19874 19871 6 SGCIPENHGEDMRK Unmodified 1628.7035 0.70352376 511 F5H1S9;G8JLB3;Q9Y606-2;Q9Y606;F5H168;F5GY32;F8W9U5;F5H1B2;F5GXL3 PUS1 tRNA pseudouridine synthase;tRNA pseudouridine synthase A, mitochondrial yes no 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 49.398 43.657 3;4 0.00094143 6 35776 20150910_Q1_SA_NiHu_Masterprac_group13_C 67.019 60.398 14931000 1196700 2500900 3235000 1318800 2479200 4200200 6868 511 6769 30086;30087;30088;30089;30090;30091;30092;30093;30094;30095;30096;30097 19875;19876;19877;19878;19879;19880 19877 6 SGDETPGSEVPGDK Unmodified 1373.5947 0.59466805 640 H3BQZ7;Q1KMD3 hCG_2044799;HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 60.398 53.721 2 0.0014308 3 37692 20150910_Q1_SA_NiHu_Masterprac_group13_B 81.789 56.168 8934300 680870 1973100 1623800 482530 1047200 3126800 6869 640 6770 30098;30099;30100;30101;30102;30103 19881;19882;19883 19881 3 SGDFQGADRPGPEEK Unmodified 1588.7118 0.71176349 510 F5H1N7;Q6ZU35;F5H2I6 KIAA1211 Uncharacterized protein KIAA1211 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 60.387 54.27 3 0.0025123 2 38556 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.287 47.656 3258500 0 572560 1444800 0 0 1241200 6870 510 6771 30104;30105;30106 19884;19885 19885 2 SGDGANAGGLVAAIAPKGSEK Unmodified 1868.9592 0.9592044 701 O15014 ZNF609 Zinc finger protein 609 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 127.96 127.66 3 0.0030636 1 81620 20150910_Q1_SA_NiHu_Masterprac_group10_B 47.499 32.511 10602000 0 10106000 0 496700 0 0 6871 701 6772 30107;30108 19886 19886 1 SGDGATEQAAEYVPEKVK Acetyl (Protein N-term) 1919.9113 0.91125116 1067 Q12996;E9PB40;E9PJ06;Q12996-2 CSTF3 Cleavage stimulation factor subunit 3 yes no 1 0 1 By matching By matching By MS/MS By matching By matching By matching 1 130.49 112.5 2 0.0076156 1 81162 20150910_Q1_SA_NiHu_Masterprac_group13_C 52.644 13.767 0 0 0 0 0 0 0 6872 1067 6773 30109 19887 19887 1 SGDGEGTPVEHVR Unmodified 1338.6164 0.61640654 359 Q7L576;E7EQ04;Q7L576-3;Q7L576-2 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 50.093 44.661 2 0.016884 1 32188 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.467 33.3 1472300 0 318970 0 0 474020 679290 6873 359 6774 30110;30111;30112 19888 19888 1 SGDICNACVLLVK Unmodified 1447.7163 0.71632028 183 F5H6U2;F5GZ82;Q9NP50;B7Z287 FAM60A Protein FAM60A yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 132.96 132.96 2 0.015427 1 86022 20150910_Q1_SA_NiHu_Masterprac_group13_B 51.359 23.683 4584700 0 0 0 4584700 0 0 6874 183 6775 30113 19889 19889 1 SGDQNWVSVSR Unmodified 1233.5738 0.57381344 171 H7C128;H7C179;Q9H0E9-4;B5MCW3;H7C127;Q9H0E9-2;Q9H0E9;F8WBH2 BRD8 Bromodomain-containing protein 8 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 100.78 91.101 2 0.0040645 4 62106 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.964 44.269 13160000 2003200 1511400 1980900 0 3559500 4105300 6875 171 6776 30114;30115;30116;30117;30118 19890;19891;19892;19893 19892 4 SGEEDEEILFKER Unmodified 1579.7366 0.73658126 945 P49792;E9PGT0 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 120.96 113.14 2;3 0.0045118 4 78717 20150910_Q1_SA_NiHu_Masterprac_group15_C 62.162 42.963 23459000 2697000 5999300 2554700 872870 5325800 6009600 6876 945 6777 30119;30120;30121;30122;30123;30124;30125;30126 19894;19895;19896;19897 19896 4 SGEGIREPISVK Unmodified 1270.6881 0.68811492 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 89.363 83.507 3 0.023874 1 56818 20150910_Q1_SA_NiHu_Masterprac_group10_B 50.46 26.706 6120400 339520 1262000 0 951790 2107400 1459700 6877 578 6778 30127;30128;30129;30130;30131 19898 19898 1 SGEGIREPISVKEQHK Unmodified 1792.9432 0.94316041 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 2 2 2 67.051 59.991 3;4 0.00031317 8 42364 20150910_Q1_SA_NiHu_Masterprac_group10_B 87.363 60.23 74097000 2658100 6917100 12703000 13001000 23519000 15298000 6878 578 6779 30132;30133;30134;30135;30136;30137;30138;30139;30140;30141;30142 19899;19900;19901;19902;19903;19904;19905;19906 19904 8 SGELNGDQVSLGTKK Unmodified 1531.7842 0.78420015 350 E7ENF1;G5EA44;Q96C57;F5H7W8;F5H8B7;H0YGK4;F6TFQ5 C12orf43 Uncharacterized protein C12orf43 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 82.108 74.564 3 0.0023529 2 51697 20150910_Q1_SA_NiHu_Masterprac_group10_B 53.946 36.806 7016100 683990 1179800 801640 913150 2357200 1080400 6879 350 6780 30143;30144;30145;30146;30147;30148 19907;19908 19908 2 SGFEGMFTK Unmodified 1002.4481 0.44806757 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 132.01 121.58 2 2.721E-41 5 83749 20150910_Q1_SA_NiHu_Masterprac_group13_C 137.05 89.13 226340000 110260000 38561000 27656000 33138000 16726000 0 6880 945 6781 30149;30150;30151;30152;30153 19909;19910;19911;19912;19913 19910 5 SGFKGFDTSSSSSNSAASSSFK Unmodified 2171.9607 0.96072055 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 113.77 104.69 3 1.0453E-06 5 71686 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.833 65.833 32985000 6871200 4163500 3855300 4339200 6965600 6790100 6881 531 6782 30154;30155;30156;30157;30158;30159 19914;19915;19916;19917;19918 19915 5 SGFLPCRKPVEK Unmodified 1416.7548 0.7547547 1616 Q9UNQ0-2;Q9UNQ0;H0YAF3;H0YAF1 ABCG2 ATP-binding cassette sub-family G member 2 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 75.59 68.291 3 0.032965 2 47439 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.511 58.511 7210700 0 862300 1390900 878730 2211100 1867700 6882 1616 6783 30160;30161;30162;30163;30164 19919;19920 19919 1 SGFSSISVSR Unmodified 1025.5142 0.5141733 788 P04259;CON__P04259;F5H6G5 KRT6B Keratin, type II cytoskeletal 6B no no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 103.34 94.967 2 1.4486E-15 5 63481 20150910_Q1_SA_NiHu_Masterprac_group13_B 123.51 75.422 66004000 9646400 11587000 4277700 16860000 11574000 12059000 + 6883 788 6784 30165;30166;30167;30168;30169;30170 19921;19922;19923;19924;19925 19921 5 SGFSSPSPSQTSSLGTAFTQHHRPVITGPR Unmodified 3123.5486 0.54860833 1062 Q12857-2;B1AKN5;F5H0R0;Q12857;B1AKN8;F8W8W3;B1AKN6 NFIA Nuclear factor 1 A-type yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 131.2 121.02 4;5 2.31E-21 3 86146 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.062 68.888 70133000 0 0 33404000 9331700 8960600 18436000 6884 1062 6785 30171;30172;30173;30174 19926;19927;19928 19927 3 SGFSSVSVSR Unmodified 1011.4985 0.49852324 287 P02538;CON__P02538 KRT6A Keratin, type II cytoskeletal 6A yes no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 86.35 78.739 2 0.0025538 4 59008 20150910_Q1_SA_NiHu_Masterprac_group15_C 101.3 21.31 96889000 7609000 7751400 7018500 40021000 23692000 10797000 + 6885 287 6786 30175;30176;30177;30178;30179;30180 19929;19930;19931;19932 19931 4 SGFSSVSVSRSRGSGGLGGACGGAGFGSR Unmodified 2660.2474 0.24735771 287 P02538;CON__P02538 KRT6A Keratin, type II cytoskeletal 6A yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 109 109 4 0.00027884 1 71464 20150910_Q1_SA_NiHu_Masterprac_group13_B 40.718 30.369 5604400 0 0 0 5604400 0 0 + 6886 287 6787 30181 19933 19933 1 SGGASHSELIHNLRK Unmodified 1604.8383 0.83830141 566 F8WDT3;F8WAV5;F8WAX2;P22061;P22061-2;H7BY58 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase;Protein-L-isoaspartate O-methyltransferase yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 62.103 55.095 3;4 0.0002634 8 38869 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.933 55.208 110330000 0 6624900 19868000 34281000 33055000 16505000 6887 566 6788 30182;30183;30184;30185;30186;30187;30188;30189;30190 19934;19935;19936;19937;19938;19939;19940;19941 19937 7 SGGDLTLHYRQK Unmodified 1373.7052 0.70516197 264 Q8TAF3-2;C9JQ19;Q8TAF3-5;Q8TAF3-4;Q8TAF3-3;Q8TAF3 WDR48 WD repeat-containing protein 48 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 67.594 60.555 3 0.0033954 3 49018 20150910_Q1_SA_NiHu_Masterprac_group13_C 70.728 47.637 4362800 0 755430 691850 475850 935080 1504500 6888 264 6789 30191;30192;30193;30194;30195 19942;19943;19944 19942 3 SGGGFGPDPGSGTTVPAR Unmodified 1615.759 0.75904803 1489 Q9H4L4 SENP3 Sentrin-specific protease 3 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 102.82 95.552 2 0.003524 1 69319 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.537 33.547 3600500 0 952390 0 0 510860 2137200 6889 1489 6790 30196;30197;30198 19945 19945 1 SGGGFSSGSAGIINYQR Unmodified 1656.7856 0.78559713 789 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 128.25 118.5 2 5.9056E-271 3 77244 20150910_Q1_SA_NiHu_Masterprac_group10_C 173.19 147.21 21076000 10251000 1260400 0 0 6739800 2824000 + 6890 789 6791 30199;30200;30201;30202 19946;19947;19948 19948 3 SGGGFSSGSAGIINYQRR Unmodified 1812.8867 0.88670816 789 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1 117.14 106.82 3 0.00029338 6 77343 20150910_Q1_SA_NiHu_Masterprac_group13_C 70.26 48.399 50161000 5927300 3712700 2393900 4773300 26030000 7324200 + 6891 789 6792 30203;30204;30205;30206;30207;30208;30209 19949;19950;19951;19952;19953;19954 19950 6 SGGGGGGGFGRVSLAGACGVGGYGSR Unmodified 2256.0454 0.045410423 299 P13647;CON__P13647;F8VV57 KRT5 Keratin, type II cytoskeletal 5 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 131.35 121.85 3 1.3182E-162 7 83535 20150910_Q1_SA_NiHu_Masterprac_group10_B 138.24 122.51 186430000 22825000 42841000 22416000 75364000 3222700 19762000 + 6892 299 6793 30210;30211;30212;30213;30214;30215 19955;19956;19957;19958;19959;19960;19961 19959 7 SGGGGGGGFGRVSLAGACGVGGYGSRSLYNLGGSK Unmodified 3175.5217 0.52174165 299 P13647;CON__P13647;F8VV57 KRT5 Keratin, type II cytoskeletal 5 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 132.96 132.96 4 6.0259E-08 1 86029 20150910_Q1_SA_NiHu_Masterprac_group13_B 37.93 27.173 24251000 0 0 0 24251000 0 0 + 6893 299 6794 30216 19962 19962 1 SGGGGGGGGCGGGGGVSSLR Unmodified 1548.6699 0.66991545 298 P13645;CON__P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 57.661 51.219 2 0.00010668 6 41701 20150910_Q1_SA_NiHu_Masterprac_group15_C 70.02 64.144 29771000 3171000 3205900 9730100 3215200 2951100 7497800 + 6894 298 6795 30217;30218;30219;30220;30221;30222 19963;19964;19965;19966;19967;19968 19966 6 SGGGGGGGGCGGGGGVSSLRISSSK Unmodified 2050.945 0.94502768 298 P13645;CON__P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 83.23 75.626 3 4.9951E-16 5 58960 20150910_Q1_SA_NiHu_Masterprac_group13_C 81.696 72.085 37975000 4311600 2550600 11631000 11007000 3223500 5251600 + 6895 298 6796 30223;30224;30225;30226;30227;30228 19969;19970;19971;19972;19973 19970 5 SGGGGGGGLGSGGSIR Unmodified 1231.5905 0.59052614 899 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 57.762 51.27 2 2.0271E-37 7 36789 20150910_Q1_SA_NiHu_Masterprac_group15_B 114.63 86.856 73459000 6832000 12880000 24264000 7078700 14655000 7749400 + 6896 899 6797 30229;30230;30231;30232;30233;30234 19974;19975;19976;19977;19978;19979;19980 19976 7 SGGGGGGGLGSGGSIRSSYSR Unmodified 1811.8511 0.85105094 899 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 2 1 77.329 68.719 3 9.8662E-33 6 53370 20150910_Q1_SA_NiHu_Masterprac_group15_C 101.3 80.779 60854000 6317000 7201200 10190000 15415000 14719000 7012400 + 6897 899 6798 30235;30236;30237;30238;30239;30240;30241;30242 19981;19982;19983;19984;19985;19986 19983 6 SGGGGGRFSSCGGGGGSFGAGGGFGSR Unmodified 2292.9679 0.96788838 789 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11 8 11 11 13 7 112.63 102.82 3 3.689E-98 34 66113 20150910_Q1_SA_NiHu_Masterprac_group13_B 124.39 111.19 311760000 27827000 32538000 80669000 59689000 60013000 51027000 + 6898 789 6799 30243;30244;30245;30246;30247;30248;30249;30250;30251;30252;30253;30254;30255;30256;30257;30258;30259;30260;30261;30262;30263;30264;30265;30266;30267;30268;30269;30270;30271;30272;30273;30274;30275;30276;30277;30278;30279;30280;30281;30282;30283;30284;30285;30286;30287;30288;30289;30290;30291;30292;30293;30294;30295;30296;30297;30298;30299;30300;30301;30302;30303 19987;19988;19989;19990;19991;19992;19993;19994;19995;19996;19997;19998;19999;20000;20001;20002;20003;20004;20005;20006;20007;20008;20009;20010;20011;20012;20013;20014;20015;20016;20017;20018;20019;20020 19988 31 SGGGGGRFSSCGGGGGSFGAGGGFGSRSLVNLGGSK Unmodified 3148.4493 0.44930499 789 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 132.17 125.28 3;4 2.9033E-144 5 84914 20150910_Q1_SA_NiHu_Masterprac_group13_B 123.51 114.43 209360000 0 9535600 58386000 108990000 7717600 24724000 + 6899 789 6800 30304;30305;30306;30307;30308;30309 20021;20022;20023;20024;20025 20021 5 SGGGSCGGGGSYSASSSSSAAAAAGAAVLPVKKPK Unmodified 3038.4727 0.47272578 1126 Q15022 SUZ12 Polycomb protein SUZ12 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 124.76 115.28 4 3.1541E-17 5 75914 20150910_Q1_SA_NiHu_Masterprac_group10_C 55.984 43.961 24802000 9790100 1590600 5772700 3245000 1472700 2931300 6900 1126 6801 30310;30311;30312;30313;30314;30315 20026;20027;20028;20029;20030 20030 5 SGGGSVGAVVVKQEPLEEDSPSSSSAGLDK Unmodified 2872.3938 0.39378998 240 C9JCN8;P15408-3;P15408;P15408-2 FOSL2 Fos-related antigen 2 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 131.4 115.72 3 6.6425E-13 1 77016 20150910_Q1_SA_NiHu_Masterprac_group10_C 60.797 53.342 3902800 3902800 0 0 0 0 0 6901 240 6802 30316 20031 20031 1 SGGLQTPECLSR Unmodified 1303.619 0.61904908 1017 P85037;P85037-2;F5H8G8 FOXK1 Forkhead box protein K1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 99.229 91.509 2 0.03709 2 62416 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.357 21.286 7930300 0 2133300 1321200 434750 867900 3173200 6902 1017 6803 30317;30318;30319;30320;30321 20032;20033 20032 2 SGGNEVSIEER Unmodified 1175.5418 0.54184461 1130 Q15061 WDR43 WD repeat-containing protein 43 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 60.5 57.542 2 0.010058 1 40518 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.827 38.12 5698700 1071300 1281400 0 758190 0 2587900 6903 1130 6804 30322;30323;30324;30325 20034 20034 1 SGGSGHAVAEPASPEQELDQNKGK Unmodified 2392.1255 0.12549446 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 83.304 76.568 4 3.0017E-07 2 52862 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.985 53.324 6080400 0 1959500 0 0 1188800 2932100 6904 919 6805 30326;30327;30328 20035;20036 20035 1 SGGSRSFSTASAITPSVSR Unmodified 1853.9232 0.92315325 299 P13647;CON__P13647;F8VV57;E7EU87;F8VU69 KRT5 Keratin, type II cytoskeletal 5 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 108.7 98.446 3 0.00034487 1 65304 20150910_Q1_SA_NiHu_Masterprac_group13_B 69.07 69.07 9390000 929760 0 1311800 7148500 0 0 + 6905 299 6806 30329;30330;30331 20037 20037 1 SGGSRSFSTASAITPSVSRTSFTSVSR Unmodified 2719.3525 0.35253429 299 P13647;CON__P13647;F8VV57;E7EU87;F8VU69 KRT5 Keratin, type II cytoskeletal 5 yes no 0 0 2 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 130.48 130.18 4 2.0926E-13 2 83465 20150910_Q1_SA_NiHu_Masterprac_group13_B 70.767 49.525 33326000 0 3229600 0 30096000 0 0 + 6906 299 6807 30332;30333 20038;20039 20038 2 SGGTEGLLAEK Unmodified 1060.5401 0.5400537 521 Q96K98;F5H5Y3;G3V1U4;Q9UHB9;F5H281 SRP68 Signal recognition particle subunit SRP68 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 85.751 77.003 2 0.017377 1 53178 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.567 23.692 1720800 0 0 0 0 634320 1086500 6907 521 6808 30334;30335 20040 20040 1 SGGTPYIGSK Acetyl (Protein N-term) 1007.4924 0.49237523 128 B4DTG6;Q8ND56-2;Q8ND56;I3L4Q1 LSM14A Protein LSM14 homolog A yes no 1 0 0 By matching By MS/MS By matching By matching By matching By matching 1 84.117 81.607 2 0.01325 1 55795 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.265 30.347 971060 0 971060 0 0 0 0 6908 128 6809 30336 20041 20041 1 SGGVIKPPAMSSR Unmodified 1285.6813 0.6812554 1493 Q9H5Q4 TFB2M Dimethyladenosine transferase 2, mitochondrial yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 86.725 79.48 3 0.0022754 1 55095 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.846 44.778 3457200 230190 190220 0 0 467620 2569100 6909 1493 6810 30337;30338;30339;30340 20042 20042 1 SGHSSVEDAQATMELYK Unmodified 1851.8309 0.83089235 1509 Q9H9L3 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 3 2 2 121.08 112.79 2;3 8.8812E-08 10 75032 20150910_Q1_SA_NiHu_Masterprac_group10_C 91.616 73.721 74301000 17035000 10804000 21883000 7353800 5080800 12144000 6910 1509 6811 30341;30342;30343;30344;30345;30346;30347;30348;30349;30350;30351;30352 20043;20044;20045;20046;20047;20048;20049;20050;20051;20052 20051 10 SGIQPLCPER Unmodified 1155.5706 0.57064232 913 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 95.615 87.686 2 0.015827 4 66201 20150910_Q1_SA_NiHu_Masterprac_group13_C 67.214 34.024 84482000 5615300 10377000 9768900 4957800 20581000 33182000 6911 913 6812 30353;30354;30355;30356;30357;30358 20053;20054;20055;20056 20054 4 SGIQPLCPERSHISDQSPLSSK Unmodified 2422.1911 0.19107161 913 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 2 125.81 113.23 3;4 0.0030122 5 80476 20150910_Q1_SA_NiHu_Masterprac_group13_C 48.146 36.074 713100000 163300000 1347100 297300000 36553000 214600000 0 6912 913 6813 30359;30360;30361;30362;30363;30364;30365 20057;20058;20059;20060;20061 20058 5 SGKAPILIATDVASR Unmodified 1497.8515 0.85149185 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 129.34 119.84 3 8.69E-56 4 77536 20150910_Q1_SA_NiHu_Masterprac_group10_C 127.05 87.468 114430000 15307000 11529000 14159000 2146600 8202000 63084000 6913 1361;629 6814 30366;30367;30368;30369;30370;30371 20062;20063;20064;20065 20065 4 SGKLKGDDLQAIK Unmodified 1371.7722 0.7721789 68 G3V576;G3V4W0;B4DY08;G3V4C1;P07910-2;B2R603;G3V2Q1;P07910;P07910-3;G3V5V7;G8JL89;G3V2D6;O60812 HNRNPC;HNRNPCL1 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1 yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 68.765 61.521 3 3.0157E-157 5 43152 20150910_Q1_SA_NiHu_Masterprac_group15_B 166.7 121.42 38725000 10679000 7302300 6271900 3711800 6286500 4473200 6914 68 6815 30372;30373;30374;30375;30376;30377 20066;20067;20068;20069;20070 20068 5 SGKSPILVATAVAAR Unmodified 1439.846 0.84601255 693 O00571;O00571-2;B4DXX7;O15523;B4E132 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 130.57 116.47 3 1.2757E-08 4 77107 20150910_Q1_SA_NiHu_Masterprac_group10_C 98.676 62.902 19479000 2928600 0 2482700 0 2236400 11832000 6915 693 6816 30378;30379;30380;30381 20071;20072;20073;20074 20074 4 SGKYVLGYKQTLK Unmodified 1483.8399 0.83986454 342 E5RI99;P62888;E5RJH3 RPL30 60S ribosomal protein L30 yes no 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 89.326 81.631 3 5.1584E-34 3 55870 20150910_Q1_SA_NiHu_Masterprac_group13_B 121.13 87.933 222190000 143020000 6325400 7532800 40335000 17736000 7241200 6916 342 6817 30382;30383;30384;30385;30386;30387 20075;20076;20077 20075 3 SGLIPIRNVTEAK Unmodified 1396.8038 0.80381338 1302 Q8N5C6;Q8N5C6-2;B7Z6X7 SRBD1 S1 RNA-binding domain-containing protein 1 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 1 2 1 2 1 126.98 114.94 2;3 7.9203E-47 7 76273 20150910_Q1_SA_NiHu_Masterprac_group10_C 130.19 94.412 88353000 31599000 3199100 32188000 3237700 11111000 7019300 6917 1302 6818 30388;30389;30390;30391;30392;30393;30394;30395;30396 20078;20079;20080;20081;20082;20083;20084 20084 7 SGLKKPVVASSLK Unmodified 1312.8078 0.80783613 1557 Q9NWW7 C2orf42 Uncharacterized protein C2orf42 yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 72.397 65.178 3 0.020044 1 50994 20150910_Q1_SA_NiHu_Masterprac_group15_C 59.294 37.623 6177800 0 568450 951730 682550 2659300 1315800 6918 1557 6819 30397;30398;30399;30400;30401 20085 20085 1 SGLPVGPENGVELSK Unmodified 1481.7726 0.77257283 449 E9PJS4;P08240 SRPR Signal recognition particle receptor subunit alpha yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 131.47 126.04 2 1.1142E-13 2 83829 20150910_Q1_SA_NiHu_Masterprac_group13_B 104.94 65.545 43052000 14232000 12804000 0 16016000 0 0 6919 449 6820 30402;30403;30404 20086;20087 20086 2 SGLQTDYATEK Unmodified 1211.567 0.56699673 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 74.167 66.756 2 2.4156E-06 6 46434 20150910_Q1_SA_NiHu_Masterprac_group15_B 106.79 71.825 106490000 8581300 26135000 17273000 6591400 16699000 31208000 6920 919 6821 30405;30406;30407;30408;30409;30410 20088;20089;20090;20091;20092;20093 20090 6 SGMVQTEAQYR Unmodified 1268.5819 0.58193529 1040 Q06124;Q06124-2 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 75.053 70.29 2 0.0169 1 48534 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.885 40.164 1093700 170020 0 0 0 0 923720 6921 1040 6822 30411;30412 20094 20094 1 SGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGR Unmodified 2951.239 0.23897787 863 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 111.7 103.62 3 0.001082 1 71147 20150910_Q1_SA_NiHu_Masterprac_group15_B 30.915 25.568 15388000 0 3361000 3323600 3323300 1166900 4213600 6922 863 6823 30413;30414;30415;30416;30417 20095 20095 1 SGNIVAGIANESK Unmodified 1258.6517 0.65172941 129 F8W720;B4DUT7;P49915 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 108.61 99.778 2 2.4624E-05 3 73269 20150910_Q1_SA_NiHu_Masterprac_group13_C 97.223 58.985 57095000 8786600 10675000 8837700 4070900 8299100 16425000 6923 129 6824 30418;30419;30420;30421;30422;30423 20096;20097;20098 20097 3 SGNIVAGIANESKK Unmodified 1386.7467 0.74669243 129 F8W720;B4DUT7;P49915 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 94.378 86.519 2;3 0.0015858 4 59265 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.937 37.539 36689000 1976500 4509300 4447500 3230200 9467000 13058000 6924 129 6825 30424;30425;30426;30427;30428;30429;30430;30431;30432;30433;30434;30435 20099;20100;20101;20102 20099 4 SGNTGELRSVIHSHIK Unmodified 1733.9173 0.91728001 1155 Q16666-3;Q16666-2;Q16666;H3BLV7;E7EPR3 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 99.614 90.515 4 0.020034 1 61839 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.014 22.835 18094000 0 0 2001200 3306800 6618900 6167200 6925 1155 6826 30436;30437;30438;30439 20103 20103 1 SGPTDDGEEEMEEDTVTNGS Unmodified 2097.7804 0.7804325 814 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A' yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 101.14 99.633 2 0.0066229 1 66141 20150910_Q1_SA_NiHu_Masterprac_group10_B 43.946 43.946 9248700 0 9248700 0 0 0 0 6926 814 6827 30440 20104 20104 1 SGPTWLPPKQPEPARAPQGR Acetyl (Protein N-term) 2211.1549 0.15488452 1145 Q15654;F2ZC08;F2ZC07 TRIP6 Thyroid receptor-interacting protein 6 yes no 1 0 2 By matching By matching By matching By matching By matching By MS/MS 1 2 127.22 123.71 3 0.010422 2 83562 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.044 29.664 4040300 0 570660 0 0 0 3469600 6927 1145 6828 30441;30442;30443 20105;20106 20105 0 SGQSFRSLGKAPASLPTEEK Unmodified 2089.0804 0.080382171 1404 Q96L73-2;Q96L73-3;Q96L73 NSD1 Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 117.54 104.81 4 0.021878 1 69007 20150910_Q1_SA_NiHu_Masterprac_group10_B 35.436 19.711 5251200 1389900 1196700 2151400 0 513220 0 6928 1404 6829 30444;30445;30446;30447 20107 20107 1 SGQVYSFGCNDEGALGRDTSVEGSEMVPGK Unmodified 3132.3764 0.37644213 271 C9JW69;P18754;P18754-2;C9JRH2;C9JMJ4;C9J3R0;C9JQZ4;H7C497 RCC1 Regulator of chromosome condensation yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.37 131.76 3 5.5775E-08 1 85282 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.26 46.643 11291000 0 11291000 0 0 0 0 6929 271 6830 30448 20108 20108 1 SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEK Unmodified 3858.7676 0.76764675 271 C9JW69;P18754;P18754-2;C9JRH2;C9JMJ4;C9J3R0;C9JQZ4;H7C497 RCC1 Regulator of chromosome condensation yes no 0 0 2 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 132.83 132.53 4 8.6345E-18 3 85858 20150910_Q1_SA_NiHu_Masterprac_group13_B 57.325 50.576 33906000 0 8878200 0 25028000 0 0 6930 271 6831 30449;30450 20109;20110;20111 20109 3 SGRFGGNPGGFGNQGGFGNSR Unmodified 2025.9154 0.91538253 1073 Q13148;Q13148-2;B4DJ45 TARDBP TAR DNA-binding protein 43 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 110.09 101.24 3 3.2487E-15 7 73995 20150910_Q1_SA_NiHu_Masterprac_group13_C 93.551 74.264 42337000 3557800 7480000 9944600 3740000 1665900 15949000 6931 1073 6832 30451;30452;30453;30454;30455;30456 20112;20113;20114;20115;20116;20117;20118 20113 7 SGRLWSK Acetyl (Protein N-term) 874.4661 0.4661009 277 F8WBS5;F8WB72;C9K025;P18077 RPL35A 60S ribosomal protein L35a yes no 1 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 85.387 78.506 2 0.0088304 2 58933 20150910_Q1_SA_NiHu_Masterprac_group15_C 96.492 26.893 4269400 906800 804620 0 701560 1856400 0 6932 277 6833 30457;30458;30459;30460 20119;20120 20119 2 SGSALLQSQSSTEDPK Unmodified 1633.7795 0.7795087 1204 Q5VTR2 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 81.914 74.962 2 0.029533 1 52016 20150910_Q1_SA_NiHu_Masterprac_group10_B 38.889 21.344 2498200 0 550400 594740 0 0 1353100 6933 1204 6834 30461;30462;30463 20121 20121 1 SGSMDPSGAHPSVR Unmodified 1383.6201 0.62011171 1045 Q07666;Q07666-3;Q07666-2;E7ET98 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 58.941 52.494 2;3 9.2204E-70 9 43102 20150910_Q1_SA_NiHu_Masterprac_group15_C 133.88 104.66 77848000 2382400 7506200 9413300 5172000 22138000 31236000 6934 1045 6835 30464;30465;30466;30467;30468;30469;30470;30471;30472;30473 20122;20123;20124;20125;20126;20127;20128;20129;20130 20126 8 SGSPVATFK Unmodified 892.46543 0.46543219 1438 Q9BQ67 GRWD1 Glutamate-rich WD repeat-containing protein 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 72.692 69.578 2 0.036116 1 48297 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.765 42.411 7150400 1630400 1406600 0 885540 0 3227900 6935 1438 6836 30474;30475;30476;30477 20131 20131 1 SGSQRQGSWDSRDVVLSTSPK Unmodified 2276.1145 0.11453585 1576 Q9P275;Q9P275-2;E9PEW0 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 110.11 97.424 4 2.4049E-06 1 65641 20150910_Q1_SA_NiHu_Masterprac_group10_C 65.765 47.141 4289300 4289300 0 0 0 0 0 6936 1576 6837 30478 20132 20132 1 SGSSFVHQASFK Unmodified 1280.6149 0.61494998 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 85.457 77.81 2;3 3.0513E-98 11 53727 20150910_Q1_SA_NiHu_Masterprac_group10_C 154.23 109.59 73563000 9951200 11806000 11113000 5890200 18234000 16569000 6937 945 6838 30479;30480;30481;30482;30483;30484;30485;30486;30487;30488;30489;30490;30491 20133;20134;20135;20136;20137;20138;20139;20140;20141;20142;20143 20143 11 SGSSSSSIPESQSNHSNQSDSGVSDTQPAGHVR Unmodified 3312.4475 0.4475099 278 Q70E73;C9K0J5;Q70E73-5;C9J164;Q70E73-2;Q70E73-8;Q70E73-7;Q70E73-4;Q70E73-3;Q70E73-9;Q70E73-6 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 72.61 65.391 4 0.011064 2 45425 20150910_Q1_SA_NiHu_Masterprac_group15_B 24.623 20.224 6457700 0 821000 1538800 966960 1649300 1481600 6938 278 6839 30492;30493;30494;30495;30496 20144;20145 20144 2 SGTEPKENVENWQSSK Unmodified 1818.8384 0.83842057 758 O94913;E9PKN0;E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 78.696 70.208 3 0.0024516 2 54028 20150910_Q1_SA_NiHu_Masterprac_group15_C 57.173 46.721 5302600 1397200 0 0 0 1531500 2373900 6939 758 6840 30497;30498;30499 20146;20147 20147 2 SGTSSPQSPVFR Unmodified 1248.6099 0.6098646 423 Q8N556;E9PDT7 AFAP1 Actin filament-associated protein 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 85.122 77.56 2 0.0018291 1 58633 20150910_Q1_SA_NiHu_Masterprac_group15_C 83.226 62.843 9732600 527900 1375900 817550 981070 2536900 3493300 6940 423 6841 30500;30501;30502;30503;30504;30505 20148 20148 1 SGTSSPQSPVFRHR Unmodified 1541.7699 0.76988749 423 Q8N556;E9PDT7 AFAP1 Actin filament-associated protein 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 59.986 51.612 3 0.0053396 1 42344 20150910_Q1_SA_NiHu_Masterprac_group15_C 56.295 35.912 1388600 0 671400 0 0 717250 0 6941 423 6842 30506;30507 20149 20149 1 SGVISGGASDLKAK Unmodified 1288.6987 0.69867961 1110 Q14683;G8JLG1 SMC1A Structural maintenance of chromosomes protein 1A yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 74.861 67.433 3 0.0011282 3 47051 20150910_Q1_SA_NiHu_Masterprac_group10_B 74.133 42.785 12599000 955420 2713700 1564500 1259700 3163200 2942200 6942 1110 6843 30508;30509;30510;30511;30512;30513 20150;20151;20152 20152 3 SGVNSELVK Unmodified 931.49746 0.4974606 901 P35659;P35659-2;B4DFG0;D6RDA2;H0Y8X0 DEK Protein DEK yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 66.339 59.245 2 0.0093753 5 41829 20150910_Q1_SA_NiHu_Masterprac_group15_B 102.06 12.309 85674000 11765000 9593500 26220000 6254600 13222000 18619000 6943 901 6844 30514;30515;30516;30517;30518;30519 20153;20154;20155;20156;20157 20155 5 SGVSLAALK Unmodified 844.50182 0.5018177 818;843 P16403;P10412;P16402 HIST1H1C;HIST1H1E;HIST1H1D Histone H1.2;Histone H1.4;Histone H1.3 no no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 117.48 107.18 2 0.00021076 5 71094 20150910_Q1_SA_NiHu_Masterprac_group10_C 112.11 40.23 152510000 26240000 12684000 9937900 6705000 39572000 57373000 6944 843;818 6845 30520;30521;30522;30523;30524;30525;30526 20158;20159;20160;20161;20162 20162 5 SGVSLAALKK Unmodified 972.59678 0.59678072 818;843 P16403;P10412;P16402 HIST1H1C;HIST1H1E;HIST1H1D Histone H1.2;Histone H1.4;Histone H1.3 no no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 92.608 84.796 2 1.6508E-14 3 57759 20150910_Q1_SA_NiHu_Masterprac_group10_C 121.61 70.162 91821000 20776000 8166600 7229000 5868400 29303000 20478000 6945 843;818 6846 30527;30528;30529;30530;30531;30532 20163;20164;20165 20165 3 SGWTSASSWAVRK Unmodified 1421.7052 0.70516197 547 Q99590-2;F8VXG7;Q99590 SCAF11 Protein SCAF11 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 122.34 111.87 3 4.5665E-06 1 76709 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.732 70.517 7074800 0 1253600 1523200 0 2014800 2283200 6946 547 6847 30533;30534;30535;30536 20166 20166 1 SGYFALGNEKGK Unmodified 1269.6354 0.63535107 1654 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 95.583 86.57 2;3 0.0058486 3 64234 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.602 47.025 12719000 900150 0 1782100 1023700 2479700 6533400 6947 1654 6848 30537;30538;30539;30540;30541 20167;20168;20169 20168 3 SGYRSGGGFSSGSAGIINYQR Unmodified 2120.0035 0.0035288336 789 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 123.44 113.94 3 3.8867E-33 7 78850 20150910_Q1_SA_NiHu_Masterprac_group15_C 104.81 92.679 45404000 16963000 3210100 6510100 7113100 6929000 4679200 + 6948 789 6849 30542;30543;30544;30545;30546;30547 20170;20171;20172;20173;20174;20175;20176 20174 7 SGYRSGGGFSSGSAGIINYQRR Unmodified 2276.1046 0.10463986 789 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 112.54 103.48 4 0.00090457 4 73651 20150910_Q1_SA_NiHu_Masterprac_group15_C 52.866 29.431 46781000 4768100 4994200 6145700 17246000 5865700 7760900 + 6949 789 6850 30548;30549;30550;30551;30552;30553 20177;20178;20179;20180 20179 4 SHACFQIILR Unmodified 1243.6496 0.64956134 193 B7Z6Q6;Q99661;Q99661-2;B7Z7M6 KIF2C Kinesin-like protein KIF2C yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 132.01 127.05 3 0.0022402 1 86969 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.568 70.323 5552900 0 0 0 0 0 5552900 6950 193 6851 30554 20181 20181 1 SHAHPGCLKEPHHPAQTGHVSHSSQK Unmodified 2850.3481 0.34807481 1353 Q92576-2;Q92576;E7EVH3;E9PE34;B3KP41;D6R9X2 PHF3 PHD finger protein 3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 37.865 37.112 5 0.021105 1 26066 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.175 21.308 769890 0 0 0 0 0 769890 6951 1353 6852 30555 20182 20182 1 SHAVGPQEIR Unmodified 1092.5676 0.56760585 565 F8WAJ0;Q9H8H2 DDX31 Probable ATP-dependent RNA helicase DDX31 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 54.247 47.378 2 0.033976 1 33893 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.721 36.764 845380 0 0 470740 0 0 374640 6952 565 6853 30556;30557 20183 20183 1 SHAVLLVK Unmodified 865.53854 0.53853756 1115 Q14807;B7Z265;H3BRB3;H3BTH5 KIF22 Kinesin-like protein KIF22 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 71.521 65.706 2 3.8944E-16 1 45585 20150910_Q1_SA_NiHu_Masterprac_group15_B 129.47 60.268 6563000 0 0 498560 402680 0 5661700 6953 1115 6854 30558;30559;30560 20184 20184 1 SHCIAEVEK Unmodified 1071.5019 0.50189405 294 CON__P02769 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 45.239 39.916 2 2.9369E-30 5 32117 20150910_Q1_SA_NiHu_Masterprac_group13_C 136.52 93.432 103620000 4952200 32333000 55127000 5294500 2963600 2946400 + 6954 294 6855 30561;30562;30563;30564;30565;30566 20185;20186;20187;20188;20189 20186 5 SHDGSVGKPYICQSCGK Unmodified 1878.8353 0.83526622 1517 Q9HBE1-3;Q9HBE1;Q9HBE1-2;Q9HBE1-4 PATZ1 POZ-, AT hook-, and zinc finger-containing protein 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 2 1 64.903 54.446 3;4 0.00048113 2 44196 20150910_Q1_SA_NiHu_Masterprac_group15_C 82.837 62.18 4050100 457260 0 661300 0 1825100 1106400 6955 1517 6856 30567;30568;30569;30570;30571 20190;20191 20191 2 SHEGGITKPYTCSVCGK Unmodified 1879.8557 0.85566731 1094 Q14119 VEZF1 Vascular endothelial zinc finger 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 70.965 63.572 3;4 0.00041277 12 44627 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.781 50.535 75456000 7601000 7283000 4638300 6277700 24804000 24853000 6956 1094 6857 30572;30573;30574;30575;30576;30577;30578;30579;30580;30581;30582;30583;30584 20192;20193;20194;20195;20196;20197;20198;20199;20200;20201;20202;20203 20199 10 SHESNAPGSAGGQASEKPR Unmodified 1865.8616 0.86161562 1231 Q6PJG2;F6RU81 ELMSAN1 ELM2 and SANT domain-containing protein 1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 26.549 22.011 3 0.0098627 2 14894 20150910_Q1_SA_NiHu_Masterprac_group10_B 41.323 34.474 967480 0 431980 535500 0 0 0 6957 1231 6858 30585;30586 20204;20205 20205 2 SHESNAPGSAGGQASEKPREGTGK Unmodified 2338.0898 0.089777658 1231 Q6PJG2;F6RU81 ELMSAN1 ELM2 and SANT domain-containing protein 1 yes no 0 0 2 By matching By matching By MS/MS By matching By MS/MS By MS/MS 2 1 1 2 1 1 27.626 24.404 3;4 2.597E-07 3 20141 20150910_Q1_SA_NiHu_Masterprac_group13_C 61.963 54.38 21469000 3519100 3273100 3686900 3228000 6923100 839180 6958 1231 6859 30587;30588;30589;30590;30591;30592;30593;30594 20206;20207;20208 20206 3 SHFLLEQEK Unmodified 1129.5768 0.57677356 176 C9IZM8;B5MEB7;Q8WXE1-3;Q8WXE1-2;Q8WXE1;F8WE08 ATRIP ATR-interacting protein yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 90.23 82.79 2 3.4095E-19 2 56661 20150910_Q1_SA_NiHu_Masterprac_group15_B 125.57 81.799 8572400 0 1680700 1592600 776180 1368900 3154000 6959 176 6860 30595;30596;30597;30598;30599 20209;20210 20210 2 SHGFAAEFK Unmodified 992.47158 0.4715802 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 86.557 74.675 2 0.013284 2 58582 20150910_Q1_SA_NiHu_Masterprac_group13_C 79.986 50.815 9672100 0 5194400 4265800 0 211960 0 6960 352;968 6861 30600;30601;30602 20211;20212 20211 2 SHGFAAEFKLVDQSGPPHEPK Unmodified 2277.1178 0.11783031 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 131.33 121.83 4 5.6971E-74 5 85672 20150910_Q1_SA_NiHu_Masterprac_group15_B 121.48 110.5 90313000 4613700 8895500 21505000 9871100 4915200 40512000 6961 352;968 6862 30603;30604;30605;30606;30607;30608 20213;20214;20215;20216;20217 20214 3 SHGFAAEFKLVDQSGPPHEPKFVYQAK Unmodified 3013.5086 0.508641 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 132.58 127.61 5 4.9896E-12 1 87543 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.711 54.183 58798000 0 0 0 0 0 58798000 6962 352;968 6863 30609 20218 20218 1 SHGLFGLNENQLR Unmodified 1483.7532 0.75317479 1390 Q96H79 ZC3HAV1L Zinc finger CCCH-type antiviral protein 1-like yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 132.2 123.94 3 2.9854E-24 4 84573 20150910_Q1_SA_NiHu_Masterprac_group10_B 116.51 74.827 217640000 0 75658000 15196000 17851000 21899000 87033000 6963 1390 6864 30610;30611;30612;30613;30614 20219;20220;20221;20222 20222 4 SHGLQNQPWQK Unmodified 1321.6527 0.65273247 1066 Q12986;Q12986-2;F5GXD0;Q12986-3 NFX1 Transcriptional repressor NF-X1 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 70.422 63.094 3 0.025408 1 45244 20150910_Q1_SA_NiHu_Masterprac_group10_C 51.286 32.955 6505300 649230 752260 1044200 669190 967580 2422900 6964 1066 6865 30615;30616;30617;30618;30619;30620 20223 20223 1 SHGVGHDRYLVVGRK Unmodified 1678.9016 0.90157036 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 61.29 52.393 4 0.036135 1 42498 20150910_Q1_SA_NiHu_Masterprac_group15_C 37.793 25.301 4561300 715230 0 973850 785410 2086800 0 6965 578 6866 30621;30622;30623;30624 20224 20224 1 SHISDQSPLSSK Unmodified 1284.631 0.63099397 913 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 2 2 2 2 2 61.158 54.351 2;3 4.6859E-12 11 39065 20150910_Q1_SA_NiHu_Masterprac_group15_B 109.16 78.823 68575000 8343700 9261400 9851400 5827200 14744000 20547000 6966 913 6867 30625;30626;30627;30628;30629;30630;30631;30632;30633;30634;30635;30636;30637 20225;20226;20227;20228;20229;20230;20231;20232;20233;20234;20235 20227 11 SHISTDAHSLNSAAQ Unmodified 1537.7121 0.71209784 337 H0YCY5;E9PNY0;G8JLP0;Q9UIF7-6;Q9UIF7-5;Q9UIF7-4;Q9UIF7-3;Q9UIF7-2;Q9UIF7;E5KP25 MUTYH A/G-specific adenine DNA glycosylase yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 64.934 58.104 3 0.026216 1 40930 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.629 21.426 6709400 530300 1303500 2102100 0 0 2773500 6967 337 6868 30638;30639;30640;30641 20236 20236 1 SHLACHEDKVPCQVCGK Unmodified 2023.9026 0.90263428 1517 Q9HBE1-3;Q9HBE1;Q9HBE1-2 PATZ1 POZ-, AT hook-, and zinc finger-containing protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 62.777 54.279 4 0.019052 1 38799 20150910_Q1_SA_NiHu_Masterprac_group10_B 40.242 31.899 3374300 0 1650200 1724100 0 0 0 6968 1517 6869 30642;30643 20237 20237 1 SHLGPKPFGCDVCGK Unmodified 1657.7705 0.77048112 1408 Q96MX3 ZNF48 Zinc finger protein 48 yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 87.955 81.152 3 0.00073258 2 60731 20150910_Q1_SA_NiHu_Masterprac_group15_C 79.804 65.201 10006000 0 1257100 0 0 3789200 4959300 6969 1408 6870 30644;30645;30646 20238;20239 20238 2 SHLIQVEREKMQMELSHK Oxidation (M) 2238.1249 0.1249063 252 C9JJ38;Q9Y6D9 MAD1L1 Mitotic spindle assembly checkpoint protein MAD1 yes no 0 1 2 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 133.58 133.58 3 0.010939 2 86685 20150910_Q1_SA_NiHu_Masterprac_group13_B 68.481 25.663 161520000 0 0 0 161520000 0 0 6970 252 6871 30647;30648 20240;20241 20240 20;21 2 SHLLNCCPHDVLSGTR Unmodified 1864.8672 0.86723505 186 B7Z500;Q9Y383-2;Q9Y383;B7Z4Q3;C9JWT3 LUC7L2;C7orf55 Putative RNA-binding protein Luc7-like 2;UPF0562 protein C7orf55 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 105.79 98.488 3 0.022015 1 67215 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.531 29.961 2885500 0 968810 0 0 523500 1393100 6971 186 6872 30649;30650;30651 20242 20242 1 SHLRTHTGERPFACDWQGCDK Unmodified 2557.1339 0.13390785 1462 Q9BXK1 KLF16 Krueppel-like factor 16 yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 94.447 83.302 4 0.035647 1 56806 20150910_Q1_SA_NiHu_Masterprac_group13_B 32.121 26.289 4261000 0 0 2696700 921020 643200 0 6972 1462 6873 30652;30653;30654 20243 20243 1 SHPAMSPGTPGPTMGR Unmodified 1579.7235 0.72353092 1326 Q8NFD5;Q8NFD5-2;Q8NFD5-3;G3XAA0 ARID1B AT-rich interactive domain-containing protein 1B yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 82.84 76.348 3 0.0016469 1 52717 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.885 25.953 3358600 164120 0 0 369190 1416000 1409300 6973 1326 6874 30655;30656;30657;30658 20244 20244 1 SHPPDKWAQGAGAK Unmodified 1448.7161 0.71606101 687 O00257 CBX4 E3 SUMO-protein ligase CBX4 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 47.345 42.952 3 0.01466 1 30786 20150910_Q1_SA_NiHu_Masterprac_group10_B 47.621 32.244 2203200 415090 580920 0 161410 497820 547980 6974 687 6875 30659;30660;30661;30662;30663 20245 20245 1 SHRCPFPDCAK Unmodified 1373.5969 0.59687385 1462 Q9BXK1 KLF16 Krueppel-like factor 16 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 2 40.167 35.055 3 0.018332 2 33092 20150910_Q1_SA_NiHu_Masterprac_group10_C 57.164 47.509 4195800 4195800 0 0 0 0 0 6975 1462 6876 30664;30665 20246;20247 20247 2 SHRPQQNVGVQGAATR Unmodified 1704.8768 0.87681218 740 O75362 ZNF217 Zinc finger protein 217 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 41.055 36.101 3 6.2066E-07 4 25461 20150910_Q1_SA_NiHu_Masterprac_group10_B 91.616 73.601 3912300 0 526950 668860 337100 1020800 1358600 6976 740 6877 30666;30667;30668;30669;30670 20248;20249;20250;20251 20251 4 SHRSYSCQVTHEGSTVEK Unmodified 2090.944 0.94396504 216 P0CG05;P0CG04;P0CF74;B9A064 IGLC2;IGLC1;IGLC6;IGLL5 Ig lambda-2 chain C regions;Ig lambda-1 chain C regions;Ig lambda-6 chain C region;Immunoglobulin lambda-like polypeptide 5 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 50.024 42.053 4 0.0016347 1 34518 20150910_Q1_SA_NiHu_Masterprac_group13_C 58.688 58.688 2902300 0 0 2159300 539350 203630 0 6977 216 6878 30671;30672;30673 20252 20252 1 SHRTEMDWVLK Unmodified 1400.6871 0.68706906 958 P52597;B4DKS8 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 116.61 107.47 3 1.1005E-07 4 70586 20150910_Q1_SA_NiHu_Masterprac_group10_B 107.55 51.778 4285300 0 928870 1178300 745290 1432800 0 6978 958 6879 30674;30675;30676;30677 20253;20254;20255;20256 20255 4 SHSAPSEVGFSDARHVTVR Unmodified 2037.998 0.99804953 1265 Q86V48-2;Q86V48-3;Q86V48 LUZP1 Leucine zipper protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 92.215 84.403 4 0.00069911 1 57862 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.681 51.188 8132400 898310 1052400 1320500 775060 1885900 2200200 6979 1265 6880 30678;30679;30680;30681;30682;30683 20257 20257 1 SHSAQQPVLVSQTLDIHK Unmodified 1987.0487 0.048688112 1594 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YAV4 TRPS1 Zinc finger transcription factor Trps1 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 1 2 1 2 123.43 113.75 3;4 1.4241E-45 7 80647 20150910_Q1_SA_NiHu_Masterprac_group13_C 117.53 97.857 11827000 3025400 1427100 4012100 253230 0 3109500 6980 1594 6881 30684;30685;30686;30687;30688;30689;30690;30691 20258;20259;20260;20261;20262;20263;20264 20258 7 SHSPSASQSGSQLRNR Unmodified 1697.8194 0.81935688 460 E9PMS6;Q8WWI1-3;E9PMT2;Q8WWI1 LMO7 LIM domain only protein 7 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 32.609 27.469 3 0.014856 2 19292 20150910_Q1_SA_NiHu_Masterprac_group10_B 42.785 33.502 868830 0 350820 518010 0 0 0 6981 460 6882 30692;30693 20265;20266 20266 2 SHTFPELAYRK Unmodified 1347.6935 0.69353465 1543 Q9NSD9;F5H6Y1 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 95.242 90.015 3 0.0013815 3 61652 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.344 62.068 8422200 0 1774300 0 598540 1384500 4664800 6982 1543 6883 30694;30695;30696;30697 20267;20268;20269 20267 3 SHTGERPFLCSECGK Unmodified 1763.7719 0.77193768 1401 Q96K58;C9JHH8 ZNF668 Zinc finger protein 668 yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 69.123 62.024 3 0.0058455 2 43532 20150910_Q1_SA_NiHu_Masterprac_group13_B 52.101 9.0706 6066500 0 835620 643550 925620 2087500 1574200 6983 1401 6884 30698;30699;30700;30701;30702 20270;20271 20270 2 SHTILLVQPTKRPEGR Acetyl (Protein N-term) 1873.0534 0.05337956 581 G3V279;P84090 ERH Enhancer of rudimentary homolog yes no 1 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 111.25 102.36 3;4 5.9182E-12 9 67615 20150910_Q1_SA_NiHu_Masterprac_group13_B 99.941 85.665 496020000 131000000 40704000 102770000 124620000 11702000 85227000 6984 581 6885 30703;30704;30705;30706;30707;30708;30709;30710;30711;30712;30713;30714 20272;20273;20274;20275;20276;20277;20278;20279;20280 20272 8 SHVCEHCNAAFR Unmodified 1486.6194 0.6194002 1626 Q9UQR1;F5H173 ZNF148 Zinc finger protein 148 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 42.327 37.205 3 0.0010559 4 26366 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.701 75.478 4710400 349650 848380 1202800 235900 787260 1286400 6985 1626 6886 30715;30716;30717;30718;30719;30720 20281;20282;20283;20284 20282 4 SHYNINCNSTRTPVAK Unmodified 1860.8901 0.89007898 54 Q9NSV4-6;A8MYX0;Q9NSV4-5;C9JL55;Q9NSV4-4;C9JDG1;Q9NSV4;C9JDG0 DIAPH3 Protein diaphanous homolog 3 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 62.925 59.914 3 0.017188 1 42415 20150910_Q1_SA_NiHu_Masterprac_group10_B 67.136 47.839 0 0 0 0 0 0 0 6986 54 6887 30721 20285 20285 1 SIADSEESEAYK Unmodified 1327.578 0.57795535 38 Q9BY42;A8MSH5 RTFDC1 Protein RTF2 homolog yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 1 1 73.683 66.178 2 0.0019102 4 52959 20150910_Q1_SA_NiHu_Masterprac_group13_C 85.973 71.738 8727700 1721300 1495300 1462800 812340 1377000 1858900 6987 38 6888 30722;30723;30724;30725;30726;30727;30728 20286;20287;20288;20289 20286 4 SIAHPEEISSNSQVR Unmodified 1652.8118 0.81181188 1290 Q8IYH5-2;Q8IYH5;Q8IYH5-4;C9JUA4 ZZZ3 ZZ-type zinc finger-containing protein 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 81.765 72.54 3 0.00042194 4 50304 20150910_Q1_SA_NiHu_Masterprac_group10_B 83.633 67.41 8364800 0 1610500 873190 0 890230 4990800 6988 1290 6889 30729;30730;30731;30732 20290;20291;20292;20293 20293 4 SIAPSIFGGTDMKK Unmodified 1450.749 0.74900062 892 P33992;B1AHB1;E7EQY5 MCM5 DNA replication licensing factor MCM5 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 131.34 123.57 3 3.5776E-20 3 86360 20150910_Q1_SA_NiHu_Masterprac_group15_B 107.93 92.589 17093000 0 3284200 0 0 1825400 11984000 6989 892 6890 30733;30734;30735 20294;20295;20296 20294 3 SICEVLDLER Unmodified 1232.6071 0.60708741 901 P35659;P35659-2;B4DFG0;D6RDA2;H0Y8X0 DEK Protein DEK yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 136.01 128.16 2 0.0026978 2 83140 20150910_Q1_SA_NiHu_Masterprac_group10_C 99.343 38.652 118710000 10510000 0 0 108200000 0 0 6990 901 6891 30736;30737 20297;20298 20298 2 SIEGCCICR Unmodified 1153.4678 0.46783351 183 F5H6U2;F5GZ82;Q9NP50;B7Z287;H0YGG0 FAM60A Protein FAM60A yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 74.345 65.371 2 0.0081925 2 50979 20150910_Q1_SA_NiHu_Masterprac_group15_C 87.639 46.916 9156900 0 743570 952210 0 3017700 4443500 6991 183 6892 30738;30739;30740;30741 20299;20300 20299 2 SIEIPRPVDGVEVPGCGK Unmodified 1907.9775 0.977497 879 P26368-2;P26368 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.6 132 3 0.0054616 1 85549 20150910_Q1_SA_NiHu_Masterprac_group10_B 46.494 31.301 32861000 0 32861000 0 0 0 0 6992 879 6893 30742 20301 20301 1 SIEYLEEDAQK Unmodified 1323.6194 0.61942623 1405 Q96L91-4;Q96L91-3;Q96L91-5;Q96L91-2;Q96L91 EP400 E1A-binding protein p400 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 111.62 100.42 2 0.0033559 1 68364 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.045 64.713 2295400 317110 0 0 0 575940 1402300 6993 1405 6894 30743;30744;30745 20302 20302 1 SIFASPESVTGK Unmodified 1221.6241 0.62411768 751 O75940 SMNDC1 Survival of motor neuron-related-splicing factor 30 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 131.04 113.17 2 0.018186 1 81940 20150910_Q1_SA_NiHu_Masterprac_group13_C 52.79 26.084 11816000 0 0 5305200 0 6511300 0 6994 751 6895 30746;30747 20303 20303 1 SIFDHIKLPQASK Unmodified 1482.8195 0.81946344 1563;452 Q9NYF8-2;Q9NYF8;Q9NYF8-4;E9PK09;E9PQN2;E9PKI6;E9PJA7;Q9NYF8-3;E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 133.37 125.53 3 9.4018E-06 2 86218 20150910_Q1_SA_NiHu_Masterprac_group13_B 99.669 87.361 36692000 30089000 0 0 6603300 0 0 6995 1563;452 6896 30748;30749 20304;20305 20304 2 SIFQHIQSAQSQR Unmodified 1528.7746 0.77463852 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 103.56 95.68 3 0.0068344 4 69501 20150910_Q1_SA_NiHu_Masterprac_group15_C 57.434 36.849 13029000 0 1313700 1397400 1657500 3181000 5479100 6996 1639 6897 30750;30751;30752;30753;30754 20306;20307;20308;20309 20309 4 SIGAASPRPQSLEK Unmodified 1439.7732 0.77324153 1404 Q96L73-2;Q96L73-3;Q96L73 NSD1 Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 2 78 70.581 2;3 2.5287E-05 5 49024 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.766 57.087 16432000 1067000 3595200 4577300 1392900 1567500 4232400 6997 1404 6898 30755;30756;30757;30758;30759;30760;30761;30762;30763;30764 20310;20311;20312;20313;20314 20311 5 SIGSAVDQGNESIVAK Unmodified 1573.7948 0.79476484 1479 Q9H0H5;F8VRD2;F8W1E5 RACGAP1 Rac GTPase-activating protein 1 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 107.42 99.482 2 0.00025916 4 65986 20150910_Q1_SA_NiHu_Masterprac_group10_B 84.41 48.117 46012000 0 9288300 8647400 3432600 7826400 16817000 6998 1479 6899 30765;30766;30767;30768;30769 20315;20316;20317;20318 20318 4 SIIEGPIIK Unmodified 968.59063 0.59063271 23 A6NHR9;A6NHR9-2;A6NHR9-3 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 131.39 129.53 2 0.0005846 2 86925 20150910_Q1_SA_NiHu_Masterprac_group15_B 110.41 85.889 13110000 0 3720100 0 2767100 0 6623000 6999 23 6900 30770;30771;30772 20319;20320 20319 2 SIKASTATAEQFFQK Unmodified 1655.8519 0.85188578 520 F8VXR5;F8VRQ0;F8VZ72;F8W1A2;F5H5N4;F8VVB6;Q99435-4;Q99435;Q99435-2;Q99435-3 NELL2 Protein kinase C-binding protein NELL2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 95.686 88.105 3 0.0061278 1 60368 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.726 16.069 10813000 0 2266900 1731400 1443900 2119700 3251300 7000 520 6901 30773;30774;30775;30776;30777 20321 20321 1 SIKENSNAAIIK Unmodified 1286.7194 0.71941505 77 B3KXE0;P32780;E9PI26 GTF2H1 General transcription factor IIH subunit 1 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 67.609 59.199 2 0.010966 1 41708 20150910_Q1_SA_NiHu_Masterprac_group13_B 65.295 20.681 2521800 0 512750 827370 466360 715290 0 7001 77 6902 30778;30779;30780;30781 20322 20322 1 SIKNVTELK Unmodified 1030.6023 0.60226003 38 Q9BY42;A8MSH5;A2A2L5;A2A2L6 RTFDC1 Protein RTF2 homolog yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 65.394 64.006 2 2.8162E-07 2 44834 20150910_Q1_SA_NiHu_Masterprac_group15_B 118.71 59.644 3868900 0 2128700 0 745220 0 995000 7002 38 6903 30782;30783;30784 20323;20324 20323 2 SILAKPSSSPDPR Unmodified 1353.7252 0.72522871 1447 Q9BTC0;Q9BTC0-1 DIDO1 Death-inducer obliterator 1 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 76.385 69.316 3 0.0022761 3 48086 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.118 43.604 19913000 2115800 6193900 0 0 3650600 7952700 7003 1447 6904 30785;30786;30787;30788 20325;20326;20327 20325 3 SILISSVASVHHANGLAK Unmodified 1803.0003 0.0002813566 1090 Q13620-1;Q13620 CUL4B Cullin-4B yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 130.56 114.87 3 2.5486E-73 1 76170 20150910_Q1_SA_NiHu_Masterprac_group10_C 125.5 80.989 0 0 0 0 0 0 0 7004 1090 6905 30789 20328 20328 1 SILLATDVASR Unmodified 1144.6452 0.64518747 1481 Q9H0S4;G5E955 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 130.19 129.59 2 6.1909E-05 1 82875 20150910_Q1_SA_NiHu_Masterprac_group10_B 100.93 41.024 7379100 0 7379100 0 0 0 0 7005 1481 6906 30790 20329 20329 1 SILTSTTTVEHAPIWR Unmodified 1810.9577 0.95774784 224 C9J7T7;C9JE98;C9J239;Q9Y618-5;C9J0Q5;Q9Y618-4;C9JJF6;C9JFD3;Q9Y618-3;Q9Y618;Q9Y618-2;H7C0P3;H7C1J7 NCOR2 Nuclear receptor corepressor 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 134.02 129.06 2 0.036198 1 89242 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.513 14.944 0 0 0 0 0 0 0 7006 224 6907 30791 20330 20330 1 SILVSPTGPSR Unmodified 1112.619 0.61897272 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 105.17 96.28 2 1.8275E-13 5 69758 20150910_Q1_SA_NiHu_Masterprac_group15_C 118.23 32.371 103560000 22884000 12239000 9842300 8043400 19045000 31511000 7007 1111 6908 30792;30793;30794;30795;30796;30797;30798 20331;20332;20333;20334;20335 20333 5 SINAFRETAK Unmodified 1135.5986 0.59857163 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 67.21 60.251 2 1.9905E-23 5 42313 20150910_Q1_SA_NiHu_Masterprac_group15_B 127.87 72.515 25410000 0 5989700 4556700 1103300 4944700 8815700 7008 919;920 6909 30799;30800;30801;30802;30803 20336;20337;20338;20339;20340 20338 5 SINAFRETAKQK Unmodified 1391.7521 0.75211216 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 52.879 46.904 3 0.01042 3 40103 20150910_Q1_SA_NiHu_Masterprac_group13_C 70.685 38.963 145700000 3094800 36454000 38953000 13796000 19975000 33424000 7009 919;920 6910 30804;30805;30806;30807;30808;30809 20341;20342;20343 20341 3 SINFLHQVCHDQTPTTK Unmodified 2024.9738 0.97380861 1376 Q96CW5-2;Q96CW5 TUBGCP3 Gamma-tubulin complex component 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 112.43 108.57 3 0.0021353 1 74334 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.862 35.105 950800 0 0 0 0 0 950800 7010 1376 6911 30810 20344 20344 1 SINQQSGAHVELQR Unmodified 1565.791 0.79101686 1394 Q96I24 FUBP3 Far upstream element-binding protein 3 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 2 71.298 67.066 2;3 5.8517E-05 3 46718 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.845 67.331 11752000 0 2933600 0 571420 2368500 5878600 7011 1394 6912 30811;30812;30813;30814;30815 20345;20346;20347 20346 3 SIPAGAEPGEK Unmodified 1054.5295 0.52948901 98 Q9H910;B4DLH4;H3BU16;Q9H910-2;A6NGP5 HN1L Hematological and neurological expressed 1-like protein yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 57.957 50.21 2 0.012048 2 41168 20150910_Q1_SA_NiHu_Masterprac_group15_C 62.466 51.811 4938900 0 873450 1027800 0 801340 2236300 7012 98 6913 30816;30817;30818;30819 20348;20349 20349 2 SIPALSMETQK Unmodified 1203.6169 0.61692381 1399 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 123.73 114.23 2 0.0046624 3 78285 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.819 52.096 32597000 4139200 4004700 8658400 1961800 7828800 6004000 7013 1399 6914 30820;30821;30822;30823;30824;30825 20350;20351;20352 20352 3 SIPEPLPAADMKK Unmodified 1395.7432 0.74318696 1117 Q14865-2;Q14865 ARID5B AT-rich interactive domain-containing protein 5B yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 114.91 106.83 3 0.015258 2 77417 20150910_Q1_SA_NiHu_Masterprac_group13_C 44.829 25.872 6582100 0 1598900 983630 857800 924810 2217000 7014 1117 6915 30826;30827;30828;30829;30830 20353;20354 20353 2 SIPSLVDGFKPGQRK Unmodified 1627.9046 0.90459006 1035 Q02880-2;Q02880;E9PCY5 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 2 130.49 126.98 3;4 9.4744E-31 3 85726 20150910_Q1_SA_NiHu_Masterprac_group15_B 117.03 94.038 62856000 0 17750000 0 0 0 45106000 7015 1035 6916 30831;30832;30833 20355;20356;20357 20355 3 SIRPDNMSEYSK Unmodified 1425.6558 0.65582851 1086;1358 Q92769;H3BM24;B3KRS5;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9;Q13547;Q5TEE2 HDAC2;HDAC1 Histone deacetylase 2;Histone deacetylase;Histone deacetylase 1 no no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 76.865 69.387 3 5.9709E-12 3 55125 20150910_Q1_SA_NiHu_Masterprac_group13_C 109 79.926 109090000 2799200 15286000 23409000 2433600 4900400 60265000 7016 1358;1086 6917 30834;30835;30836;30837;30838;30839 20358;20359;20360 20358 3 SIRPDNMSEYSK Oxidation (M) 1441.6507 0.65074314 1086;1358 Q92769;H3BM24;B3KRS5;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9;Q13547;Q5TEE2 HDAC2;HDAC1 Histone deacetylase 2;Histone deacetylase;Histone deacetylase 1 no no 0 1 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 50.07 43.125 3 0.0014921 1 30956 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.902 72.243 4846300 0 815910 1129000 0 492930 2408500 7017 1358;1086 6917 30840;30841;30842;30843 20361 20361 132 1 SIRPLLEGRDLLAAAK Unmodified 1722.0152 0.015203139 1550 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 133.15 124.23 3;4 0.00091486 2 86294 20150910_Q1_SA_NiHu_Masterprac_group13_B 80.371 42.431 31824000 0 0 0 6672400 25152000 0 7018 1550 6918 30844;30845 20362;20363 20362 2 SISELSDQYKQEK Unmodified 1553.7573 0.7573167 936 P49454 CENPF Centromere protein F yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 91.874 79.958 2 1.937E-05 1 54722 20150910_Q1_SA_NiHu_Masterprac_group10_B 96.866 69.732 1904900 0 689370 462170 0 753320 0 7019 936 6919 30846;30847;30848 20364 20364 0 SISGENATSESEFTLGGDDSGVSMNPARSALALLAMAQSGDAVSVK Unmodified 4527.1381 0.13811592 253 C9JJ88;Q2KHR3-2;Q2KHR3;H0YCQ7 QSER1 Glutamine and serine-rich protein 1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 131.71 116.02 6 0.020654 1 77327 20150910_Q1_SA_NiHu_Masterprac_group10_C 6.6305 1.6382 2680100 2680100 0 0 0 0 0 7020 253 6920 30849 20365 20365 0 SISISVAR Unmodified 831.48142 0.48141661 789 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 2 1 99.979 90.676 2 0.0064467 2 66903 20150910_Q1_SA_NiHu_Masterprac_group15_C 95.909 11.666 700540000 16713000 688440 216040000 181200000 133040000 152860000 + 7021 789 6921 30850;30851;30852;30853;30854;30855;30856 20366;20367 20367 2 SISLASCHQLHSK Unmodified 1466.73 0.72999651 750 O75691 UTP20 Small subunit processome component 20 homolog yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 71.8 64.455 3 0.0011406 6 52116 20150910_Q1_SA_NiHu_Masterprac_group13_C 75.89 47.101 13309000 1180800 2004800 1406000 1057900 2112800 5546200 7022 750 6922 30857;30858;30859;30860;30861;30862 20368;20369;20370;20371;20372;20373 20369 6 SISLYYTGEKGQNQDYRGGK Unmodified 2263.0869 0.086924112 397 E7EX81;P19338;H7BY16;Q9BQ02 NCL Nucleolin yes no 0 0 2 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 2 103.65 95.402 3;4 0.00042784 5 69254 20150910_Q1_SA_NiHu_Masterprac_group15_C 73.498 43.918 15493000 3366300 2731400 0 0 4424000 4971800 7023 397 6923 30863;30864;30865;30866;30867;30868;30869;30870 20374;20375;20376;20377;20378 20376 5 SISSPSVSSETMDKPVDLSTRK Unmodified 2350.1686 0.16860483 945 P49792;E9PGT0 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 118.13 108.99 4 0.025895 1 71731 20150910_Q1_SA_NiHu_Masterprac_group10_B 33.37 21.302 6160200 0 1442800 1407300 1145400 2164700 0 7024 945 6924 30871;30872;30873;30874 20379 20379 1 SITNTTVCTK Unmodified 1123.5543 0.55432356 1141 Q15637-6;Q15637-4;Q15637-3;Q15637-2;Q15637 SF1 Splicing factor 1 no no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 1 55.591 51.421 2 2.4731E-05 4 36700 20150910_Q1_SA_NiHu_Masterprac_group15_B 110.84 79.49 119140000 17487000 21368000 33056000 20442000 0 26790000 7025 1141 6925 30875;30876;30877;30878;30879;30880 20380;20381;20382;20383 20382 4 SIYFSSPK Unmodified 927.47018 0.47018322 594 G5E9E2;Q5J9I4;P29372-2;P29372;A2IDA3 MPG DNA-3-methyladenine glycosylase yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 100.55 92.826 2 0.022116 1 63307 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.149 52.044 41683000 0 6486000 1816600 2350300 4896400 26134000 7026 594 6926 30881;30882;30883;30884;30885 20384 20384 1 SIYFSSPKGHLTR Unmodified 1491.7834 0.78341229 594 G5E9E2;Q5J9I4;P29372-2;P29372;A2IDA3 MPG DNA-3-methyladenine glycosylase yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 96.858 89.639 3 0.0082784 2 61509 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.52 47.239 10263000 457520 0 0 546320 1522700 7736300 7027 594 6927 30886;30887;30888;30889 20385;20386 20385 2 SIYGEKFEDENFILK Unmodified 1830.904 0.90398093 999 P62937;Q567Q0;F8WE65;C9J5S7 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 133.37 115.52 3 0.00054668 1 82435 20150910_Q1_SA_NiHu_Masterprac_group15_C 71.08 52.846 32075000 0 0 0 0 32075000 0 7028 999 6928 30890 20387 20387 1 SKAEAESLYQSK Unmodified 1339.662 0.66195975 789 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 2 2 2 3 56.641 50.858 2;3 4.5939E-07 5 41648 20150910_Q1_SA_NiHu_Masterprac_group13_C 104.7 84.417 43938000 3863100 12590000 16678000 5786100 2345600 2675400 + 7029 789 6929 30891;30892;30893;30894;30895;30896;30897;30898;30899;30900;30901;30902;30903;30904 20388;20389;20390;20391;20392 20389 5 SKAPASSSSNPEEVQK Unmodified 1644.7955 0.79549312 1460 Q9BWU0 SLC4A1AP Kanadaptin yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 36.823 32.644 3 0.0025597 2 22545 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.495 30.767 2057900 0 686800 782080 0 0 589060 7030 1460 6930 30905;30906;30907 20393;20394 20394 2 SKDIFDQLAK Unmodified 1163.6186 0.61863837 873 P25205 MCM3 DNA replication licensing factor MCM3 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 131.18 113.31 2 9.795E-77 1 82099 20150910_Q1_SA_NiHu_Masterprac_group13_C 151.13 87.433 23312000 0 0 18704000 0 4608400 0 7031 873 6931 30908;30909 20395 20395 1 SKEEAEALYHSK Unmodified 1390.6729 0.67285879 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 2 1 1 1 52.133 45.189 2;3 0.0019263 3 31914 20150910_Q1_SA_NiHu_Masterprac_group13_B 85.271 61.443 15672000 0 3259100 6984800 2058100 708530 2661400 + 7032 302 6932 30910;30911;30912;30913;30914;30915 20396;20397;20398 20396 3 SKEGDVEEPTDDSLPTTGDAGGREPMEEK Unmodified 3075.3462 0.34624744 1602 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 108.92 100.92 4 7.7289E-13 3 73830 20150910_Q1_SA_NiHu_Masterprac_group13_C 64.035 60.625 16054000 0 1972000 2548300 1255900 2984300 7293800 7033 1602 6933 30916;30917;30918;30919;30920 20399;20400;20401 20400 3 SKELTTEIDNNIEQISSYK Unmodified 2211.0907 0.090672086 298 P13645;CON__P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 133.66 128.7 2 0.0027365 1 88784 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.087 39.036 0 0 0 0 0 0 0 + 7034 298 6934 30921 20402 20402 1 SKENCISGPVKATAPVGGPK Unmodified 1996.0412 0.041159893 698 O14965;A3KFJ0;Q5QPD4;A3KFJ1;Q5QPD2;Q5QPD1;A3KFJ2 AURKA Aurora kinase A yes no 0 0 2 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 84.414 79.362 4 0.00012351 4 54301 20150910_Q1_SA_NiHu_Masterprac_group13_B 66.606 47.783 9715400 0 2732000 0 1266100 2107800 3609500 7035 698 6935 30922;30923;30924;30925 20403;20404;20405;20406 20403 4 SKEVINRPFTNESLQPHALGPVK Unmodified 2560.3762 0.37617026 1115 Q14807;B7Z265;H3BRB3 KIF22 Kinesin-like protein KIF22 yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 130.24 117.7 4;5 2.1359E-83 8 81240 20150910_Q1_SA_NiHu_Masterprac_group13_C 121.77 107.67 285140000 28003000 0 41036000 3122100 23192000 189780000 7036 1115 6936 30926;30927;30928;30929;30930;30931;30932;30933;30934 20407;20408;20409;20410;20411;20412;20413;20414 20409 8 SKGPYICALCAK Unmodified 1366.6737 0.67372718 219 C6G496;P56270;G5E927 MAZ Myc-associated zinc finger protein yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 1 2 2 3 2 103.58 93.98 2;3 0.00010108 12 63131 20150910_Q1_SA_NiHu_Masterprac_group10_C 89.189 58.299 160150000 27021000 12393000 15541000 42718000 26375000 36102000 7037 219 6937 30935;30936;30937;30938;30939;30940;30941;30942;30943;30944;30945;30946;30947;30948 20415;20416;20417;20418;20419;20420;20421;20422;20423;20424;20425;20426 20425 11 SKGRAEAAAGAAGILLR Acetyl (Protein N-term) 1652.9322 0.93220179 1580 Q9P2W1;Q9P2W1-2 PSMC3IP Homologous-pairing protein 2 homolog yes no 1 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 131.81 129.32 3 0.00011188 2 84521 20150910_Q1_SA_NiHu_Masterprac_group13_B 63.546 32.475 7025700 0 0 0 3494800 0 3530900 7038 1580 6938 30949;30950 20427;20428 20427 0 SKLVDEEPQLTK Unmodified 1385.7402 0.74021007 1589 Q9UG63 ABCF2 ATP-binding cassette sub-family F member 2 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 93.31 85.481 2 0.0096715 3 58579 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.171 41.513 9163300 1183600 1174700 1183100 1650600 2395500 1575800 7039 1589 6939 30951;30952;30953;30954;30955;30956 20429;20430;20431 20430 3 SKNLEDDTLSECK Unmodified 1537.693 0.69300188 1118 Q14966-3;Q14966;Q14966-4;Q14966-2;C9JBI6;F5H330 ZNF638 Zinc finger protein 638 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 70.232 63.63 3 0.033124 1 44720 20150910_Q1_SA_NiHu_Masterprac_group10_B 43.798 30.209 2020900 0 372090 0 0 840940 807900 7040 1118 6940 30957;30958;30959 20432 20432 1 SKPGAAMVEMADGYAVDR Unmodified 1866.8604 0.86041834 838 P14866;A6NIT8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 2 1 1 1 131.87 123.09 2;3 2.7803E-110 5 78243 20150910_Q1_SA_NiHu_Masterprac_group10_C 138.82 123.02 193220000 30555000 72475000 46637000 29601000 13951000 0 7041 838 6941 30960;30961;30962;30963;30964;30965 20433;20434;20435;20436;20437 20437 4 SKQHSSFGYGGLQGPASGLNACQYNS Unmodified 2714.2143 0.21432625 1008 P78337 PITX1 Pituitary homeobox 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 131.8 126.83 3 4.091E-21 1 86673 20150910_Q1_SA_NiHu_Masterprac_group15_B 85.387 75.241 8077100 0 0 0 0 0 8077100 7042 1008 6942 30966 20438 20438 1 SKQPLPSAPENNPEEELASK Unmodified 2164.0648 0.064791686 698 O14965;A3KFJ0;Q5QPD4;A3KFJ1;Q5QPD2 AURKA Aurora kinase A yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 116.66 107.44 3 7.8364E-122 5 73526 20150910_Q1_SA_NiHu_Masterprac_group15_B 137.99 119.17 27687000 1535000 4862300 4479800 1115900 3065100 12629000 7043 698 6943 30967;30968;30969;30970;30971;30972 20439;20440;20441;20442;20443 20440 5 SKQPLPSAPENNPEEELASKQK Unmodified 2420.2183 0.21833222 698 O14965;A3KFJ0;Q5QPD4;A3KFJ1;Q5QPD2 AURKA Aurora kinase A yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 2 2 2 106.74 97.651 3;4 7.6397E-185 8 66602 20150910_Q1_SA_NiHu_Masterprac_group15_B 150.13 124.21 255290000 11463000 32288000 67137000 19046000 18534000 106820000 7044 698 6944 30973;30974;30975;30976;30977;30978;30979;30980;30981;30982 20444;20445;20446;20447;20448;20449;20450;20451 20449 8 SKTDLPEEKPDATPQNPFLK Unmodified 2254.1481 0.14812739 2 A1X283 SH3PXD2B SH3 and PX domain-containing protein 2B yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 129.8 127.01 3 0.00049583 2 85289 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.618 44.895 7347400 0 1797000 0 0 0 5550400 7045 2 6945 30983;30984 20452;20453 20452 2 SKVEDKPFEETGVEPVLETASSSAHSTQK Unmodified 3116.515 0.51496775 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 131.11 122.85 4 0 4 86078 20150910_Q1_SA_NiHu_Masterprac_group15_B 162.35 146.18 36025000 0 3620000 6127100 19280000 1863400 5135300 7046 1325 6946 30985;30986;30987;30988;30989 20454;20455;20456;20457 20456 3 SKVEDPEINSIQDIK Unmodified 1713.8785 0.87849447 1112 Q14690 PDCD11 Protein RRP5 homolog yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 113.79 111.78 3 0.0025212 1 73313 20150910_Q1_SA_NiHu_Masterprac_group10_B 60.489 42.076 554380 0 554380 0 0 0 0 7047 1112 6947 30990 20458 20458 1 SLAAQEPASVLEEAR Unmodified 1569.7999 0.79985021 1080 Q13415 ORC1 Origin recognition complex subunit 1 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 132.25 130.39 2 0 3 87555 20150910_Q1_SA_NiHu_Masterprac_group15_B 199.33 127.79 77005000 0 35906000 0 4210800 0 36888000 7048 1080 6948 30991;30992;30993 20459;20460;20461 20460 3 SLAGSSGPGASSGTSGDHGELVVR Unmodified 2184.0407 0.040702201 451 E9PK01;P29692;E9PMW7;E9PPR1;E9PL12;E9PQ49;E9PI39;P29692-2;E9PRY8;E9PIZ1;H0YCK7 EEF1D Elongation factor 1-delta yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 97.479 92.176 3 0.0032927 1 63146 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.341 33.967 4569100 0 1180100 0 759120 1746800 883020 7049 451 6949 30994;30995;30996;30997 20462 20462 1 SLAPAPLSTK Unmodified 983.56515 0.56514624 1008 P78337 PITX1 Pituitary homeobox 1 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 1 1 1 1 97.575 88.335 2 0.0087186 4 60389 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.659 45.915 72249000 9886800 0 19997000 7063900 11532000 23768000 7050 1008 6950 30998;30999;31000;31001;31002;31003 20463;20464;20465;20466 20464 4 SLAPEPKEPLIPASPK Unmodified 1672.94 0.93997251 1659 Q9Y613;B4DVN5 FHOD1 FH1/FH2 domain-containing protein 1 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 126.78 121.35 3 0.00041595 2 77084 20150910_Q1_SA_NiHu_Masterprac_group10_C 71.98 49.925 5941000 4160700 921350 0 859010 0 0 7051 1659 6951 31004;31005;31006 20467;20468 20468 2 SLAPSIHGHDYVK Unmodified 1422.7256 0.72556306 873 P25205 MCM3 DNA replication licensing factor MCM3 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 88.979 79.805 2 0.0022317 3 54622 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.089 31.215 7344000 588870 1173100 2298800 0 2514600 768630 7052 873 6952 31007;31008;31009;31010;31011 20469;20470;20471 20471 3 SLAPSIHGHDYVKK Unmodified 1550.8205 0.82052608 873 P25205 MCM3 DNA replication licensing factor MCM3 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 72.974 65.735 3 0.00019181 2 51321 20150910_Q1_SA_NiHu_Masterprac_group15_C 88.101 63.847 23218000 0 2730000 4509500 2188400 4724100 9065800 7053 873 6953 31012;31013;31014;31015;31016 20472;20473 20473 2 SLAVSGLGVIGRDR Unmodified 1398.7943 0.79431133 1035 Q02880-2;Q02880;E9PCY5 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 132.15 129.67 3 2.2729E-21 2 84903 20150910_Q1_SA_NiHu_Masterprac_group13_B 103.44 71.11 0 0 0 0 0 0 0 7054 1035 6954 31017;31018 20474;20475 20474 2 SLDFKEQVAEETSGDSK Unmodified 1868.864 0.86396661 896 P35251-2;P35251 RFC1 Replication factor C subunit 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 118.44 109.25 3 0.0020692 1 71820 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.688 36.016 6757800 0 3638200 1102300 691750 1325500 0 7055 896 6955 31019;31020;31021;31022 20476 20476 1 SLDFPQNEPQIK Unmodified 1414.7092 0.70924429 1322 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.33 126.37 2 0.032076 1 86240 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.88 20.126 3281400 0 0 0 0 0 3281400 7056 1322 6956 31023 20477 20477 1 SLDFPQNEPQIKNQFNK Unmodified 2046.0171 0.017053633 1322 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 131.95 124.11 3 0.0033993 2 84393 20150910_Q1_SA_NiHu_Masterprac_group13_B 50.874 32.409 36406000 21576000 0 0 14830000 0 0 7057 1322 6957 31024;31025 20478;20479 20478 2 SLDHQAVNFKQNDTK Unmodified 1743.854 0.85401105 738 O75182-2;O75182 SIN3B Paired amphipathic helix protein Sin3b yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 74.602 69.413 4 0.0008042 2 55297 20150910_Q1_SA_NiHu_Masterprac_group13_C 76.156 2.3542 16448000 0 3214000 4617000 2741200 0 5875800 7058 738 6958 31026;31027;31028;31029 20480;20481 20480 2 SLDHQGINFKQNDTK Unmodified 1743.854 0.85401105 1420 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 1 2 1 77.886 69.303 3;4 2.6835E-31 8 49398 20150910_Q1_SA_NiHu_Masterprac_group10_C 118.52 1.7368 23347000 4795400 2802000 2676500 2430200 6601000 4042000 7059 1420 6959 31030;31031;31032;31033;31034;31035;31036;31037;31038 20482;20483;20484;20485;20486;20487;20488;20489 20489 8 SLDITTSTTAYFPPGATLNNKEK Unmodified 2468.2435 0.24348433 1287 Q8IXB1;Q3B7W8;H7C1G0 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 133.41 132.8 3 1.547E-07 1 86462 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.538 46.805 50101000 0 50101000 0 0 0 0 7060 1287 6960 31039 20490 20490 1 SLDPADER Unmodified 901.41412 0.4141249 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 48.185 47.231 2 0.02381 2 33567 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.679 39.919 1969300 0 0 0 0 0 1969300 7061 1344 6961 31040 20491;20492 20491 2 SLDPADERDDVLAK Unmodified 1542.7526 0.75256567 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 1 1 1 106.36 97.39 2;3 1.3632E-55 7 64788 20150910_Q1_SA_NiHu_Masterprac_group10_B 130.47 79.333 132800000 1678600 36938000 49834000 2004800 446170 41899000 7062 1344 6962 31041;31042;31043;31044;31045;31046;31047;31048 20493;20494;20495;20496;20497;20498;20499 20499 7 SLDQCVETLQK Unmodified 1319.6391 0.63911582 1301 Q8N5A5-3;Q8N5A5-2;Q8N5A5 ZGPAT Zinc finger CCCH-type with G patch domain-containing protein yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 108.15 99.331 2 0.0017121 3 66001 20150910_Q1_SA_NiHu_Masterprac_group10_B 90.614 66.338 10021000 1256900 1289100 1935000 1500000 1641000 2398900 7063 1301 6963 31049;31050;31051;31052;31053;31054 20500;20501;20502 20501 3 SLDYVAQLRDHGK Unmodified 1500.7685 0.76849051 1250 Q7Z333-3;Q7Z333;Q7Z333-4 SETX Probable helicase senataxin yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 109.29 102.14 3 0.0052466 5 67410 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.11 47.521 11000000 1698300 2624700 2203400 869320 0 3604700 7064 1250 6964 31055;31056;31057;31058;31059 20503;20504;20505;20506;20507 20505 5 SLEAHMYPEKLK Unmodified 1444.7384 0.73843593 1029 Q01664 TFAP4 Transcription factor AP-4 yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 96.48 88.84 3 0.026573 2 65485 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.28 32.71 14034000 0 2590400 1246200 781370 1376200 8039900 7065 1029 6965 31060;31061;31062;31063;31064 20508;20509 20508 2 SLEAQVAHADQQLR Unmodified 1564.7958 0.79576789 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;Q9BTE9;H0YH75 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 2 2 2 1 119.95 108.07 2;3 0.0011059 6 74099 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.01 51.045 14900000 3339100 4440200 1448600 0 3855800 1816000 7066 1121 6966 31065;31066;31067;31068;31069;31070;31071;31072;31073 20510;20511;20512;20513;20514;20515 20510 6 SLEAQVAHADQQLRDLGK Unmodified 1978.0232 0.023201643 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;Q9BTE9;H0YH75 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.97 132.37 3 3.7055E-45 2 85964 20150910_Q1_SA_NiHu_Masterprac_group10_B 116 88.015 24823000 0 24823000 0 0 0 0 7067 1121 6967 31074 20516;20517 20517 2 SLEDPYSQQIR Unmodified 1334.6466 0.64664404 1548 Q9NVH2-4;Q9NVH2-3;Q9NVH2-2;Q9NVH2 INTS7 Integrator complex subunit 7 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 109.9 102.35 2 0.0053498 1 69719 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.531 45.1 2897600 0 730700 229950 0 0 1936900 7068 1548 6968 31075;31076;31077 20518 20518 1 SLEHKTQTPPVEENVTQK Unmodified 2064.0487 0.048747692 673 H7C4Z8;Q6P1Q9-2;Q6P1Q9 METTL2B Methyltransferase-like protein 2B yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 73.464 66.225 3 0.0019462 4 46328 20150910_Q1_SA_NiHu_Masterprac_group10_B 53.504 42.161 4487400 0 1019100 784920 371230 922220 1389900 7069 673 6969 31078;31079;31080;31081;31082 20519;20520;20521;20522 20522 4 SLEHSGSLDDPNRISLVK Unmodified 1966.012 0.011968255 1607 Q9ULJ3-2;Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 3 2 2 124.94 111.78 3;4 0.0016013 6 79967 20150910_Q1_SA_NiHu_Masterprac_group13_C 66.436 41.095 25579000 6970800 0 12809000 0 0 5798900 7070 1607 6970 31083;31084;31085;31086;31087;31088;31089 20523;20524;20525;20526;20527;20528 20525 6 SLENLNSGTVEPTHSK Unmodified 1711.8377 0.83769228 1100 Q14191 WRN Werner syndrome ATP-dependent helicase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 88.417 82.581 3 0.0012014 2 56233 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.998 62.485 5124500 561070 1052400 0 535370 990660 1985000 7071 1100 6971 31090;31091;31092;31093;31094 20529;20530 20530 2 SLESINSR Unmodified 904.46141 0.46140945 342 E5RI99;P62888;E5RJH3 RPL30 60S ribosomal protein L30 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 61.629 51.485 2 0.0065709 2 37191 20150910_Q1_SA_NiHu_Masterprac_group10_B 106.68 46.752 18604000 0 4610600 7139200 0 6854000 0 7072 342 6972 31095;31096;31097 20531;20532 20532 2 SLESINSRLQLVMK Oxidation (M) 1632.8869 0.88689108 342 E5RI99;P62888;E5RJH3 RPL30 60S ribosomal protein L30 yes no 0 1 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 2 3 131.65 127 2;3 1.6497E-123 6 84409 20150910_Q1_SA_NiHu_Masterprac_group13_B 151.22 117.38 338740000 231470000 21751000 0 85525000 0 0 7073 342 6973 31098;31099;31100;31101;31102;31103;31104 20533;20534;20535;20536;20537;20538 20533 32 6 SLESINSRLQLVMK Unmodified 1616.892 0.89197646 342 E5RI99;P62888;E5RJH3 RPL30 60S ribosomal protein L30 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 2 133.63 133.63 2;3 0.0028707 2 86764 20150910_Q1_SA_NiHu_Masterprac_group13_B 71.529 50.746 320770000 0 0 0 320770000 0 0 7074 342 6973 31105;31106 20539;20540 20539 2 SLESQVENLQK Unmodified 1273.6514 0.65139506 827 P12270 TPR Nucleoprotein TPR yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 119.69 114.4 2 3.1362E-127 4 75697 20150910_Q1_SA_NiHu_Masterprac_group10_C 160.91 64.157 12816000 6495800 2374900 0 850140 0 3095500 7075 827 6974 31107;31108;31109;31110 20541;20542;20543;20544 20544 3 SLESSQTDLK Unmodified 1106.5455 0.54553301 778 O96006;C9JXP4 ZBED1 Zinc finger BED domain-containing protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 63.086 56.209 2 0.0028559 2 40048 20150910_Q1_SA_NiHu_Masterprac_group10_B 95.523 53.313 10052000 488120 1424400 2540700 454140 1180000 3964500 7076 778 6975 31111;31112;31113;31114;31115;31116 20545;20546 20546 2 SLESSQTDLKLVAHPR Unmodified 1779.9479 0.94791144 778 O96006;C9JXP4 ZBED1 Zinc finger BED domain-containing protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 110.43 100.81 3 0.0032766 1 68827 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.246 41.541 15975000 0 0 5333300 2172400 307740 8161000 7077 778 6976 31117;31118;31119;31120 20547 20547 1 SLESSQTDLKLVAHPRAK Unmodified 1979.08 0.079988241 778 O96006;C9JXP4 ZBED1 Zinc finger BED domain-containing protein 1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 99.183 89.583 3 0.034293 1 67580 20150910_Q1_SA_NiHu_Masterprac_group13_C 41.323 4.146 1895500 0 571150 1324400 0 0 0 7078 778 6977 31121;31122 20548 20548 1 SLESTTLTEK Unmodified 1107.5659 0.5659341 1152 Q16527;F8VW96;F8VQR7 CSRP2 Cysteine and glycine-rich protein 2 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 81.572 73.909 2 0.002987 6 51053 20150910_Q1_SA_NiHu_Masterprac_group13_B 93.561 93.561 245430000 32282000 39196000 63661000 13855000 25783000 70651000 7079 1152 6978 31123;31124;31125;31126;31127;31128;31129 20549;20550;20551;20552;20553;20554 20549 6 SLETEITNGINLNSDTAEHPGTRLQTHRK Unmodified 3231.6232 0.62322984 1351 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching 2 131.35 131.35 4;5 0.00016772 2 84348 20150910_Q1_SA_NiHu_Masterprac_group13_B 41.275 32.971 9783500 0 0 0 9783500 0 0 7080 1351 6979 31130;31131 20555;20556 20555 2 SLETENAGLR Unmodified 1088.5462 0.54620171 783 P02545;P02545-3;Q6UYC3;P02545-2;Q3BDU5;Q5TCJ4 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 75.989 68.412 2 0.0029794 5 47972 20150910_Q1_SA_NiHu_Masterprac_group10_B 93.667 14.728 11680000 2413400 2790700 1435900 920720 1892200 2227200 7081 783 6980 31132;31133;31134;31135;31136;31137;31138 20557;20558;20559;20560;20561 20560 5 SLETSSALSPSLKNK Unmodified 1560.8359 0.83590137 1250 Q7Z333-3;Q7Z333;Q7Z333-4 SETX Probable helicase senataxin yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 2 1 1 2 99.368 92.258 2;3 0.0029804 2 63073 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.079 16.501 7222200 1439500 0 1309300 701390 0 3772100 7082 1250 6981 31139;31140;31141;31142;31143;31144 20562;20563 20563 2 SLEYCSTASIDSENPPDLNK Unmodified 2238.9951 0.99505714 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 1 130.91 129.37 2;3 0 3 86216 20150910_Q1_SA_NiHu_Masterprac_group15_B 191.64 171.04 97396000 0 64139000 0 7279500 0 25978000 7083 1012 6982 31145;31146;31147;31148 20564;20565;20566 20564 3 SLFIHENNEK Unmodified 1229.6041 0.60405094 63 B1AL16;Q8IX21;B1AL17 FAM178A Protein FAM178A yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 79.754 71.302 2;3 0.010204 4 48494 20150910_Q1_SA_NiHu_Masterprac_group10_C 70.399 38.181 4039800 882120 0 541860 863710 994000 758170 7084 63 6983 31149;31150;31151;31152;31153;31154 20567;20568;20569;20570 20570 4 SLFTTHSSAK Unmodified 1077.5455 0.54547343 38 Q9BY42;A8MSH5 RTFDC1 Protein RTF2 homolog yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 63.578 53.133 2 0.0057609 1 43651 20150910_Q1_SA_NiHu_Masterprac_group13_C 86.344 24.653 9919600 0 2972600 6658600 0 288430 0 7085 38 6984 31155;31156;31157 20571 20571 1 SLGKAPASLPTEEK Unmodified 1426.7668 0.76675917 1404 Q96L73-2;Q96L73-3;Q96L73 NSD1 Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 91.221 83.509 3 1.5112E-29 5 63685 20150910_Q1_SA_NiHu_Masterprac_group13_C 113.53 85.167 15726000 1656400 2821100 3192100 804790 2618000 4633900 7086 1404 6985 31158;31159;31160;31161;31162;31163 20572;20573;20574;20575;20576 20572 5 SLGNILQAKPTSSPAKGPPQK Unmodified 2118.1797 0.17970229 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 3 2 2 109.92 101.75 3;4 2.7904E-58 9 69429 20150910_Q1_SA_NiHu_Masterprac_group15_B 113.54 103.17 119580000 34915000 16497000 26288000 14123000 6435000 21323000 7087 383;1082 6986 31164;31165;31166;31167;31168;31169;31170;31171;31172;31173;31174;31175;31176 20577;20578;20579;20580;20581;20582;20583;20584;20585 20581 8 SLGPPQGEEDSVPR Unmodified 1466.7001 0.70013617 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 102.54 93.029 2 0.005758 4 63391 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.415 43.26 18088000 2000700 0 761450 891310 4490200 9944400 7088 1012 6987 31177;31178;31179;31180;31181 20586;20587;20588;20589 20587 3 SLGSVQAPSYGARPVSSAASVYAGAGGSGSR Unmodified 2853.4005 0.40054711 549 F8VZY9;P05783 KRT18 Keratin, type I cytoskeletal 18 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 131.14 128.35 3 1.645E-32 2 83697 20150910_Q1_SA_NiHu_Masterprac_group10_B 80.355 64.81 14258000 0 9541600 0 0 0 4716300 7089 549 6988 31182;31183 20590;20591 20591 2 SLGTADVHFER Unmodified 1230.5993 0.59929991 402 Q86V81;E9PB61 ALYREF THO complex subunit 4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 103.64 94.165 3 0.0044911 1 63153 20150910_Q1_SA_NiHu_Masterprac_group10_B 72.34 44.426 5274800 0 1834100 0 0 3440700 0 7090 402 6989 31184;31185 20592 20592 1 SLGTADVHFERK Unmodified 1358.6943 0.69426293 402 Q86V81;E9PB61 ALYREF THO complex subunit 4 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 83.669 75.964 3 0.00092415 6 52328 20150910_Q1_SA_NiHu_Masterprac_group13_B 77.597 48.047 33326000 4940600 3930000 2679000 1811500 9310700 10654000 7091 402 6990 31186;31187;31188;31189;31190;31191;31192 20593;20594;20595;20596;20597;20598 20593 6 SLGTIQQCCDAIDHLCR Unmodified 2045.9081 0.90811358 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 132.3 121.6 3 0 6 84569 20150910_Q1_SA_NiHu_Masterprac_group13_B 186.29 163.46 412130000 54748000 83661000 44053000 48479000 32092000 149090000 7092 1012 6991 31193;31194;31195;31196;31197;31198;31199 20599;20600;20601;20602;20603;20604 20599 6 SLGVDMDDK Unmodified 978.43281 0.43281144 1471 Q9BZE4;B7Z7A3;B4DY13 GTPBP4 Nucleolar GTP-binding protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 84.857 79.081 2 0.036082 2 54295 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.78 40.034 4621600 643630 1007000 0 686260 1217400 1067200 7093 1471 6992 31200;31201;31202;31203;31204 20605;20606 20606 2 SLGVDMDDKDDAHYAVQAR Unmodified 2104.9484 0.94838172 1471 Q9BZE4;B7Z7A3;B4DY13 GTPBP4 Nucleolar GTP-binding protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 112.31 104.66 3 0.00038886 1 71643 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.902 59.778 1911900 0 387370 446600 0 0 1078000 7094 1471 6993 31205;31206;31207 20607 20607 1 SLGYGSRSCYSVGCGSSGVR Unmodified 2094.9211 0.92112111 1173 Q52LG2 KRTAP13-2 Keratin-associated protein 13-2 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 92.355 92.355 3 0.0027388 1 62364 20150910_Q1_SA_NiHu_Masterprac_group13_B 48.919 41.101 608280 0 0 0 608280 0 0 7095 1173 6994 31208 20608 20608 1 SLHLSPQEQSASYQDRR Unmodified 2000.9664 0.96641505 1488 Q9H410;B4DWT2;Q5JW53;Q5JW58 DSN1 Kinetochore-associated protein DSN1 homolog yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 84.031 77.514 4 0.0020899 1 58700 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.595 37.677 7538100 1034300 0 0 972420 3107000 2424400 7096 1488 6995 31209;31210;31211;31212 20609 20609 1 SLHPIHQGITELSR Unmodified 1586.8529 0.85288884 1488 Q9H410;B4DWT2;Q5JW53;Q5JW54;Q9H410-2;Q5JW58;Q5JW57 DSN1 Kinetochore-associated protein DSN1 homolog yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 104.34 94.485 3 8.4479E-08 3 61919 20150910_Q1_SA_NiHu_Masterprac_group10_C 97.203 75.853 8588300 1151700 901520 981740 0 2732800 2820500 7097 1488 6996 31213;31214;31215;31216;31217 20610;20611;20612 20612 3 SLHTLFGDELCK Unmodified 1418.6864 0.68640036 294 CON__P02769 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 10 2 134.26 121.14 2;3 0 20 85719 20150910_Q1_SA_NiHu_Masterprac_group13_B 202 169.75 10237000000 1339300000 2581400000 1162400000 3776800000 535400000 841900000 + 7098 294 6997 31218;31219;31220;31221;31222;31223;31224;31225;31226;31227;31228;31229;31230;31231;31232;31233;31234;31235;31236;31237;31238;31239 20613;20614;20615;20616;20617;20618;20619;20620;20621;20622;20623;20624;20625;20626;20627;20628;20629;20630;20631;20632 20613 19 SLIERYGGK Unmodified 1021.5556 0.55564418 896 P35251-2;P35251;H0Y8U4 RFC1 Replication factor C subunit 1 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 66.981 66.404 2 0.015038 1 46402 20150910_Q1_SA_NiHu_Masterprac_group13_B 94.85 37.672 1478000 0 0 0 652060 0 825900 7099 896 6998 31240;31241 20633 20633 1 SLIGLKNTENNDVEISETK Unmodified 2103.0695 0.069542713 1201 Q5UIP0-2;Q5UIP0;H7C2B5 RIF1 Telomere-associated protein RIF1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 130.78 123.69 3 2.7092E-17 3 84048 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.169 81.889 11785000 128110 3479000 0 0 0 8178200 7100 1201 6999 31242;31243;31244 20634;20635;20636 20635 3 SLIGLKNTENNDVEISETKK Unmodified 2231.1645 0.16450573 1201 Q5UIP0-2;Q5UIP0;H7C2B5 RIF1 Telomere-associated protein RIF1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 115.06 107.34 3 0.021432 1 73665 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.696 27.082 1890400 0 331180 700430 0 0 858790 7101 1201 7000 31245;31246;31247 20637 20637 1 SLKAPGARGPGPEGGGGGSYFSGQGSDTGASLK Unmodified 3006.4431 0.44314021 848 P17275 JUNB Transcription factor jun-B yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 124.96 107.82 4 0.020908 1 76268 20150910_Q1_SA_NiHu_Masterprac_group15_C 23.206 13.142 2375700 0 0 0 0 2375700 0 7102 848 7001 31248 20638 20638 1 SLKQTPHSEIIFYK Unmodified 1689.909 0.90900673 530 F5H8F7;Q9UBL3-3;Q9UBL3;H0YBF6 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 112.97 104.95 3 0.0060023 1 76396 20150910_Q1_SA_NiHu_Masterprac_group13_C 55.196 43.274 8402900 0 1296200 1463000 601140 2219700 2823000 7103 530 7002 31249;31250;31251;31252;31253 20639 20639 1 SLKSPSDTLDGRNENLQESEILSQPK Unmodified 2884.4414 0.44140887 1274 Q86YC2 PALB2 Partner and localizer of BRCA2 yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 131.23 113.24 4 0.0011946 2 81960 20150910_Q1_SA_NiHu_Masterprac_group13_C 50.158 39.572 5005800 0 0 5005800 0 0 0 7104 1274 7003 31254 20640;20641 20640 2 SLKVTSDPKVEQK Unmodified 1457.809 0.80895834 1533 Q9NQW6 ANLN Actin-binding protein anillin yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 58.031 50.531 3 0.0069696 2 36148 20150910_Q1_SA_NiHu_Masterprac_group10_B 68.171 11.022 5264800 919340 921270 1771800 1149100 503310 0 7105 1533 7004 31255;31256;31257;31258;31259 20642;20643 20643 2 SLLALKECIR Unmodified 1201.6853 0.68527815 193;403;686 B7Z6Q6;Q99661;Q99661-2;B7Z7M6;O00139-1;E9PB70;O00139;O00139-4;O00139-2 KIF2C;KIF2A Kinesin-like protein KIF2C;Kinesin-like protein KIF2A no no 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 2 129.38 126.75 2;3 6.4486E-61 3 85322 20150910_Q1_SA_NiHu_Masterprac_group15_B 145.28 117.07 113290000 0 260980 0 4963500 0 108070000 7106 193;403;686 7005 31260;31261;31262;31263 20644;20645;20646 20645 3 SLLEGEGSSGGGGR Unmodified 1261.5899 0.58985744 298 P13645;CON__P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 64.419 62.914 2 0.024678 1 43945 20150910_Q1_SA_NiHu_Masterprac_group13_B 43.316 26.403 1225900 0 612870 0 612990 0 0 + 7107 298 7006 31264;31265 20647 20647 1 SLLESTYQRK Unmodified 1223.651 0.65100113 1420 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 81.766 75.064 3 0.013991 1 51986 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.592 27.98 4130900 0 1001500 0 0 833360 2296100 7108 1420 7007 31266;31267;31268 20648 20648 1 SLLFNAR Unmodified 819.46029 0.46028724 1222 Q6KC79-2;Q6KC79;Q6KC79-3 NIPBL Nipped-B-like protein yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 118.1 110.25 2 0.00090981 2 72681 20150910_Q1_SA_NiHu_Masterprac_group10_C 97.473 58.667 7927700 808770 1676300 1835400 585820 0 3021400 7109 1222 7008 31269;31270;31271;31272;31273 20649;20650 20650 1 SLLLKPHQREK Unmodified 1347.7987 0.79866842 962 P53350;I3L387;Q58A51 PLK1;Plk-1 delta Serine/threonine-protein kinase PLK1 yes no 0 0 2 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 44.979 41.319 3 0.01692 2 28966 20150910_Q1_SA_NiHu_Masterprac_group13_B 72.2 55.977 6855400 0 1894400 3880400 547850 0 532720 7110 962 7009 31274;31275;31276;31277 20651;20652 20651 2 SLLNKPK Acetyl (Protein N-term) 840.5069 0.50690308 990 P62316 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes yes 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 76.027 68.566 2 4.2558E-08 6 54298 20150910_Q1_SA_NiHu_Masterprac_group13_C 124.59 22.903 38854000 3694000 7707400 4216200 2330000 6106400 14800000 7111 990 7010 31278;31279;31280;31281;31282;31283 20653;20654;20655;20656;20657;20658 20654 6 SLLNKPKSEMTPEELQK Acetyl (Protein N-term) 2013.0452 0.045242218 990 P62316 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes yes 1 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 128.99 128.69 3 0.0056232 1 82104 20150910_Q1_SA_NiHu_Masterprac_group13_B 46.892 15.192 5217800 0 4291800 0 926000 0 0 7112 990 7011 31284;31285 20659 20659 1 SLLNQCIEER Unmodified 1260.6132 0.61323542 1389 Q96GM8 TOE1 Target of EGR1 protein 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 115.64 107.58 2 0.0013635 4 73759 20150910_Q1_SA_NiHu_Masterprac_group15_B 104.07 71.741 18342000 0 3239800 1874800 874560 2252200 10101000 7113 1389 7012 31286;31287;31288;31289;31290 20660;20661;20662;20663 20662 4 SLLQEAQNNLK Unmodified 1256.6725 0.67246486 1503 Q9H8X2 IPPK Inositol-pentakisphosphate 2-kinase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 130.56 130.26 2 5.1166E-70 1 83394 20150910_Q1_SA_NiHu_Masterprac_group10_B 147.62 90.276 8093400 0 4738600 0 3354800 0 0 7114 1503 7013 31291;31292 20664 20664 1 SLLSLPEKEDK Unmodified 1257.6816 0.68163256 1285 Q8IX12-2;Q8IX12;F5H1H2 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 2 2 2 2 112.75 107.17 2;3 0.0085261 2 73298 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.214 36.325 5157100 0 527970 0 743740 787390 3098000 7115 1285 7014 31293;31294;31295;31296;31297;31298;31299;31300 20665;20666 20665 2 SLLTTQCGVISEHTK Unmodified 1672.8454 0.8454202 1123 Q14CW9;Q14CW9-2 ATXN7L3 Ataxin-7-like protein 3 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 122.4 109.35 3 0.0021755 2 71727 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.69 24.39 3980000 1183600 934420 1176400 0 685560 0 7116 1123 7015 31301;31302;31303;31304 20667;20668 20667 2 SLPASHRSSTEAGGEVQTSK Unmodified 2027.9872 0.98721007 1397 Q96IT1;Q96IT1-2 ZNF496 Zinc finger protein 496 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 50.571 41.797 4 0.0069983 1 29696 20150910_Q1_SA_NiHu_Masterprac_group10_B 43.848 29.889 1167300 0 501550 444070 0 221690 0 7117 1397 7016 31305;31306;31307 20669 20669 1 SLPDTELMK Unmodified 1032.5161 0.51614714 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 118.31 108.98 2 0.0059201 5 72626 20150910_Q1_SA_NiHu_Masterprac_group10_C 94.309 28.844 71069000 8950000 14262000 11178000 5521800 7705900 23452000 7118 919;920 7017 31308;31309;31310;31311;31312;31313 20670;20671;20672;20673;20674 20674 5 SLPGQNEDLVLTGYQVDKNK Unmodified 2217.1277 0.12772629 781 P01040 CSTA Cystatin-A;Cystatin-A, N-terminally processed yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.28 131.68 3 0.0017777 1 85090 20150910_Q1_SA_NiHu_Masterprac_group10_B 51.524 25.707 9477000 0 9477000 0 0 0 0 7119 781 7018 31314 20675 20675 1 SLPIFQAR Unmodified 930.5287 0.52870115 1496 Q9H6R0;Q05BE5;I3L0M5 DHX33 Putative ATP-dependent RNA helicase DHX33 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 132.76 127.79 2 0.005313 1 87806 20150910_Q1_SA_NiHu_Masterprac_group15_B 108.09 64.28 19327000 0 0 0 0 0 19327000 7120 1496 7019 31315 20676 20676 1 SLPLENNGK Unmodified 970.50836 0.50835964 386 E7EUI3;Q99728 BARD1 BRCA1-associated RING domain protein 1 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 71.643 62.91 2 0.015329 2 50365 20150910_Q1_SA_NiHu_Masterprac_group13_C 76.064 19.63 5698600 518940 1046900 2662500 0 307730 1162500 7121 386 7020 31316;31317;31318;31319;31320 20677;20678 20677 2 SLPNEEIVQK Unmodified 1155.6136 0.61355299 854 P18583-2;P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-8 SON Protein SON yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 95.553 87.973 2 0.010621 1 64936 20150910_Q1_SA_NiHu_Masterprac_group15_C 72.848 41.09 8782000 0 1596700 1469100 752080 2537600 2426500 7122 854 7021 31321;31322;31323;31324;31325 20679 20679 1 SLPSTSSTSSTK Unmodified 1181.5776 0.57756142 1062 Q12857-2;B1AKN5;F5H0R0;Q12857;B1AKN8;F8W8W3;B1AKN7 NFIA Nuclear factor 1 A-type yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 45.93 37.724 2 0.0018262 2 30461 20150910_Q1_SA_NiHu_Masterprac_group13_C 82.85 68.171 14806000 0 4121500 10078000 0 606490 0 7123 1062 7022 31326;31327;31328 20680;20681 20680 2 SLQGRTDPIPIVVK Unmodified 1521.8879 0.88787736 1601 Q9UKJ3 GPATCH8 G patch domain-containing protein 8 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 130.88 130.28 3 0.004242 1 83674 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.116 45.961 4179800 0 4179800 0 0 0 0 7124 1601 7023 31329 20682 20682 1 SLQHQEQLEDSK Unmodified 1440.6845 0.68448611 680 I3L476;Q9BSJ6-2;I3L1U3;I3L419;Q9BSJ6;I3L156;I3L427 FAM64A Protein FAM64A yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 2 47.23 43.488 2;3 3.2055E-07 3 31172 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.89 79.567 5639600 0 2035600 1144500 0 0 2459500 7125 680 7024 31330;31331;31332;31333;31334 20683;20684;20685 20683 3 SLQSENAALR Unmodified 1087.5622 0.56218613 906 P39880-2;P39880;P39880-3;P39880-4;P39880-5;P39880-6;H0YL76;G3V1Z6;Q13948-2;Q13948;H0YMA9 CUX1 Homeobox protein cut-like 1;Protein CASP yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 68.396 62.831 2 4.9324E-09 1 44022 20150910_Q1_SA_NiHu_Masterprac_group15_B 115.78 63.065 1581500 0 0 0 168420 252270 1160800 7126 906 7025 31335;31336;31337 20686 20686 1 SLQSENAALRISNSDLSGSAR Unmodified 2175.088 0.087986745 906 P39880-2;P39880;P39880-3;P39880-5 CUX1 Homeobox protein cut-like 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 125.01 122.28 3 0.014235 1 83049 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.878 12.882 1985400 0 852480 0 0 0 1132900 7127 906 7026 31338;31339 20687 20687 1 SLQSVAEER Unmodified 1017.5091 0.50908792 365 E7EX53;Q642I1;E7EQV9;P61313 RPL15 Ribosomal protein L15;60S ribosomal protein L15 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 75.411 66.437 2 0.024533 2 51657 20150910_Q1_SA_NiHu_Masterprac_group15_C 67.334 26.982 2449400 512210 754190 0 0 1182900 0 7128 365 7027 31340;31341;31342 20688;20689 20688 2 SLSEAMSVEK Unmodified 1079.5169 0.51687542 131 B4DV47;Q6P1J9 CDC73 Parafibromin yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 88.895 82.999 2 0.023589 1 56875 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.641 18.451 3072400 588920 447170 0 140010 722870 1173400 7129 131 7028 31343;31344;31345;31346;31347 20690 20690 1 SLSLEATSPLSAEK Unmodified 1431.7457 0.74568938 1274 Q86YC2 PALB2 Partner and localizer of BRCA2 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132 131.4 2 0.0040397 1 84884 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.32 15.851 6573400 0 6573400 0 0 0 0 7130 1274 7029 31348 20691 20691 1 SLSPQDRAAYK Unmodified 1234.6306 0.63060004 455 E9PKP7;P17480-2;P17480 UBTF Nucleolar transcription factor 1 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 2 1 2 1 56.437 50.327 2;3 0.021098 4 37466 20150910_Q1_SA_NiHu_Masterprac_group10_C 55.353 23.482 6365100 1055000 1472300 0 411950 2966100 459700 7131 455 7030 31349;31350;31351;31352;31353;31354;31355;31356 20692;20693;20694;20695 20695 4 SLSSGSNFCSEQK Unmodified 1429.6144 0.61435763 769 O95243-2 MBD4 Methyl-CpG-binding domain protein 4 no no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 68.268 62.235 2 0.00086405 6 50212 20150910_Q1_SA_NiHu_Masterprac_group13_C 91.62 76.458 27751000 7479400 3188000 6016300 3661800 0 7405700 7132 769 7031 31357;31358;31359;31360;31361;31362 20696;20697;20698;20699;20700;20701 20698 6 SLTANPELIDR Unmodified 1227.6459 0.64591575 577 G3V1J5;Q9Y2L1-2;Q9Y2L1;F2Z2C0 DIS3 Exosome complex exonuclease RRP44 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 116.61 112.04 2 0.02262 1 76580 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.629 11.281 530340 0 0 0 0 0 530340 7133 577 7032 31363 20702 20702 1 SLTMHSIHNSQQPR Unmodified 1634.7947 0.79472203 659 Q86XZ4;H7BYM7;F8VS10 SPATS2 Spermatogenesis-associated serine-rich protein 2 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 2 2 1 65.261 55.274 3;4 0.0038027 3 39343 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.434 43.002 4266800 0 2145200 1516400 0 605190 0 7134 659 7033 31364;31365;31366;31367;31368 20703;20704;20705 20705 3 SLTRDTSHIPPLNRK Unmodified 1733.9537 0.95366552 1509 Q9H9L3 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 0 0 2 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 81.864 74.302 4 0.014205 3 51408 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.44 23.602 34786000 6426200 322010 5278700 3902000 9966200 8891200 7135 1509 7034 31369;31370;31371;31372;31373;31374 20706;20707;20708 20706 3 SLTSATSTSNIQSSASQPPRPQQGQVK Unmodified 2784.4002 0.40021276 1061 Q12830-4;Q12830-2;Q12830 BPTF Nucleosome-remodeling factor subunit BPTF yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 103.27 93.399 3 1.558E-13 2 69504 20150910_Q1_SA_NiHu_Masterprac_group13_C 72.864 58.98 8803700 0 0 4971300 0 0 3832400 7136 1061 7035 31375;31376 20709;20710 20709 2 SLTSWTNDQGAR Unmodified 1334.6215 0.62149192 231 F5H1W0;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4;C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 103.76 95.4 2 0.03709 1 65119 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.357 34.253 6078100 582780 910480 896900 496350 897950 2293600 7137 231 7036 31377;31378;31379;31380;31381;31382 20711 20711 1 SLVAFEGEGQFEK Unmodified 1439.6933 0.69325988 779 O96028-5;O96028-3;O96028;O96028-6;D6R9V2 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.88 132.28 2 9.8961E-60 1 85857 20150910_Q1_SA_NiHu_Masterprac_group10_B 131.79 97.293 28482000 0 28482000 0 0 0 0 7138 779 7037 31383 20712 20712 1 SLVGLGGTK Unmodified 830.48617 0.48616764 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 90.553 82.825 2 0.0095388 4 63063 20150910_Q1_SA_NiHu_Masterprac_group13_C 85.807 31.839 285280000 18681000 49554000 55962000 48272000 34924000 77889000 + 7139 302 7038 31384;31385;31386;31387;31388;31389 20713;20714;20715;20716 20713 4 SLVGVTAACTVRK Unmodified 1360.7497 0.74966932 856 P19447;G3V1S1 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 105.39 88.551 3 0.0046737 1 65345 20150910_Q1_SA_NiHu_Masterprac_group15_C 56.569 39.358 636960 0 0 0 0 636960 0 7140 856 7039 31390 20717 20717 1 SLVMHTPPVLK Unmodified 1220.6951 0.69511455 919;920 P46013;F5H4V4;P46013-2;E7EN66 MKI67 Antigen KI-67 no no 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 124.28 118.44 2;3 0.0042296 4 81682 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.841 73.841 18664000 0 2287500 7738800 1353400 0 7284000 7141 919;920 7040 31391;31392;31393;31394 20718;20719;20720;20721 20720 4 SLVMHTPPVLKK Unmodified 1348.7901 0.79007757 919;920 P46013;F5H4V4;P46013-2;E7EN66 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 107.46 97.674 3 2.0177E-18 8 72063 20150910_Q1_SA_NiHu_Masterprac_group13_C 115 101.07 122160000 21930000 21263000 15917000 7013900 17844000 38192000 7142 919;920 7041 31395;31396;31397;31398;31399;31400;31401 20722;20723;20724;20725;20726;20727;20728;20729 20723 8 SLVMHTPPVLKK Oxidation (M) 1364.785 0.78499219 919;920 P46013;F5H4V4;P46013-2;E7EN66 MKI67 Antigen KI-67 no no 0 1 1 By matching By matching By matching By matching By matching By MS/MS 1 1 2 2 2 83.821 77.009 3 0.029685 2 52905 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.501 27.581 9215400 0 1196400 1178700 1084400 2415900 3340100 7143 919;920 7041 31402;31403;31404;31405;31406;31407;31408;31409 20730;20731 20730 108 0 SLVNLGGSK Unmodified 873.49198 0.4919813 789 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 93.111 85.194 1;2 0.0063746 8 63060 20150910_Q1_SA_NiHu_Masterprac_group15_C 92.239 48.47 1677800000 153610000 193760000 401290000 290140000 318520000 320440000 + 7144 789 7042 31410;31411;31412;31413;31414;31415;31416;31417;31418;31419;31420;31421;31422 20732;20733;20734;20735;20736;20737;20738;20739 20736 8 SLVRAEAAALSTQCR Unmodified 1631.8413 0.84133787 1498 Q9H6T0-2;Q9H6T0 ESRP2 Epithelial splicing regulatory protein 2 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 107.11 101.47 3 0.00073738 2 66937 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.445 61.699 10349000 0 2703800 2004700 803800 0 4836400 7145 1498 7043 31423;31424;31425;31426 20740;20741 20741 2 SLVRAEAAALSTQCREASGLSADSLAR Unmodified 2789.409 0.40900331 1498 Q9H6T0-2;Q9H6T0 ESRP2 Epithelial splicing regulatory protein 2 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 132.68 132.08 4 0.016913 1 85623 20150910_Q1_SA_NiHu_Masterprac_group10_B 30.936 13.274 10789000 0 10789000 0 0 0 0 7146 1498 7044 31427 20742 20742 1 SLVSKGTLVQTK Unmodified 1259.7449 0.74490152 818;843;842 P16401;P16403;Q02539;P10412;P16402 HIST1H1B;HIST1H1C;HIST1H1A;HIST1H1E;HIST1H1D Histone H1.5;Histone H1.2;Histone H1.1;Histone H1.4;Histone H1.3 no no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 83.578 75.107 3 0.022874 1 52730 20150910_Q1_SA_NiHu_Masterprac_group10_C 50.897 27.221 656500 656500 0 0 0 0 0 7147 842;843;818 7045 31428 20743 20743 1 SLWCWDLLHMK Oxidation (M) 1503.7003 0.70027629 759 O94927 HAUS5 HAUS augmin-like complex subunit 5 yes yes 0 1 0 By MS/MS By matching By matching By matching By matching By matching 1 105.9 94.719 2 0.028351 1 63909 20150910_Q1_SA_NiHu_Masterprac_group10_C 55.806 18.63 0 0 0 0 0 0 0 7148 759 7046 31429 20744 20744 77 1 SLYASSPGGVYATR Unmodified 1427.7045 0.70449327 808 P08670;F5H288;B0YJC4 VIM Vimentin yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 110.08 102.71 2 0.0011072 6 70086 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.321 38.353 10596000 2088400 2625200 1333200 964980 0 3584000 7149 808 7047 31430;31431;31432;31433;31434 20745;20746;20747;20748;20749;20750 20748 6 SLYGLGGSK Unmodified 880.46543 0.46543219 287;788 P02538;CON__P02538;E7EUE8;P04259;CON__P04259;F5H6G5 KRT6A;KRT6B Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B no no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 94.567 86.705 2 0.013568 3 65615 20150910_Q1_SA_NiHu_Masterprac_group13_C 79.489 31.641 147400000 12013000 20631000 11078000 58116000 26182000 19377000 + 7150 287;788 7048 31435;31436;31437;31438;31439;31440 20751;20752;20753 20752 3 SLYNLGGSK Unmodified 937.4869 0.48689592 299 P13647;CON__P13647;F8VV57;CON__Q5XQN5 KRT5 Keratin, type II cytoskeletal 5 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 1 93.602 86.27 2 0.0060612 6 65288 20150910_Q1_SA_NiHu_Masterprac_group13_C 93.667 52.785 105820000 8825600 12848000 22005000 28996000 11796000 21346000 + 7151 299 7049 31441;31442;31443;31444;31445;31446;31447;31448 20754;20755;20756;20757;20758;20759 20755 6 SLYNLRGNK Unmodified 1063.5774 0.57744226 300 F8VS64;P19013;CON__P19013;F8VX05;F8VZR6 KRT4 Keratin, type II cytoskeletal 4 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 75.935 64.973 2 0.025714 1 45512 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.72 53.63 3818500 0 0 644260 0 1338700 1835500 + 7152 300 7050 31449;31450;31451 20760 20760 1 SMDEFTASTPADLGEAGRLRK Unmodified 2251.0903 0.09029493 1253 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 WAPAL Wings apart-like protein homolog yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 131.14 130.84 3 3.5157E-05 1 83915 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.188 55.565 12277000 0 9740100 0 2536700 0 0 7153 1253 7051 31452;31453 20761 20761 1 SMENYYQESGR Unmodified 1362.551 0.55102909 922 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 83.003 75.458 2 0.004669 1 52180 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.788 66.142 3887200 142510 698010 595050 170100 437000 1844600 7154 922 7052 31454;31455;31456;31457;31458;31459 20762 20762 1 SMLRLQK Acetyl (Protein N-term) 916.51642 0.51642191 1016 P84098 RPL19 60S ribosomal protein L19 yes yes 1 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 2 113.21 104.75 2 0.019804 2 76137 20150910_Q1_SA_NiHu_Masterprac_group13_C 73.616 15.012 9519500 0 0 1768000 1910500 559960 5281000 7155 1016 7053 31460;31461;31462;31463;31464 20763;20764 20763 1 SMMNLQTK Unmodified 951.45177 0.45177274 825 P11387 TOP1 DNA topoisomerase 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 80.221 75.358 2 0.019592 1 52172 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.219 23.672 3795300 92910 0 0 0 0 3702400 7156 825 7054 31465;31466 20765 20765 1 SMSCEESNIGAISK Unmodified 1511.6596 0.65959326 147 B4DZN9;Q6P4F7 ARHGAP11A Rho GTPase-activating protein 11A yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 99.193 90.157 2 0.0048963 3 61089 20150910_Q1_SA_NiHu_Masterprac_group10_B 56.872 42.241 4972900 0 2238300 914740 954480 865420 0 7157 147 7055 31467;31468;31469;31470;31471 20766;20767;20768 20768 3 SMSFPTGK Unmodified 853.40039 0.4003891 1030 Q01780;Q01780-2 EXOSC10 Exosome component 10 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 1 1 87.299 79.507 2 0.019305 5 54726 20150910_Q1_SA_NiHu_Masterprac_group10_B 80.455 53.762 26800000 3165900 3214300 4377200 1971100 4999300 9072200 7158 1030 7056 31472;31473;31474;31475;31476;31477;31478 20769;20770;20771;20772;20773 20771 5 SMVKGLDSYEEK Unmodified 1384.6544 0.65443153 1263 Q86UT8;E9PJ16 CCDC84 Coiled-coil domain-containing protein 84 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 96.243 88.314 2;3 2.373E-117 13 60535 20150910_Q1_SA_NiHu_Masterprac_group15_B 157.5 121.97 51596000 4316700 9469400 12627000 5113200 6283200 13786000 7159 1263 7057 31479;31480;31481;31482;31483;31484;31485;31486;31487;31488;31489;31490 20774;20775;20776;20777;20778;20779;20780;20781;20782;20783;20784;20785;20786 20778 13 SMVKGLDSYEEKEDK Unmodified 1756.8189 0.81893068 1263 Q86UT8;E9PJ16 CCDC84 Coiled-coil domain-containing protein 84 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 90.202 82.523 3 0.0076563 2 63205 20150910_Q1_SA_NiHu_Masterprac_group13_C 60.158 60.158 7362600 1048200 905480 1437300 911640 784770 2275200 7160 1263 7058 31491;31492;31493;31494;31495;31496 20787;20788 20787 2 SNAQRQDIAFAYQR Unmodified 1666.8176 0.81756596 626 H0YKS4;H0YMD0;H0YMU9;H0YN42;P07355;H0YKV8;H0YKL9;H0YKZ7;H0YLV6;H0YMT9;H0YKX9;H0YMM1;P07355-2;H0YMW4;H0YM50 ANXA2 Annexin;Annexin A2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 94.647 92.839 3 1.53E-14 1 62477 20150910_Q1_SA_NiHu_Masterprac_group10_B 101.38 68.063 0 0 0 0 0 0 0 7161 626 7059 31497 20789 20789 1 SNASTLESHETEEPAAK Unmodified 1799.8174 0.81735077 1597 Q9UJA5;B4DUV6 TRMT6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 65.582 57.109 3 0.0029483 2 40283 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.289 56.369 3946200 0 768690 392570 0 967340 1817600 7162 1597 7060 31498;31499;31500;31501 20790;20791 20790 2 SNCVKEVEKLQEK Unmodified 1589.8083 0.80830641 403;686 O00139-1;E9PB70;O00139;O00139-4;O00139-2;D6R9M0 KIF2A Kinesin-like protein KIF2A no no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 68.935 60.865 3 0.0056801 1 43996 20150910_Q1_SA_NiHu_Masterprac_group10_C 85.45 45.889 1702300 1702300 0 0 0 0 0 7163 403;686 7061 31502 20792 20792 1 SNDEEAFTFAR Unmodified 1285.5575 0.55749468 898 P35520;P35520-2;F5H2U1;B7Z2D6 CBS Cystathionine beta-synthase yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 118.08 117.28 2 0.0054843 1 75815 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.888 66.994 790170 0 790170 0 0 0 0 7164 898 7062 31503 20793 20793 1 SNDVVCKNQDELR Unmodified 1575.7311 0.73111872 1634 Q9Y2M0-2;Q9Y2M0;H3BQ24 FAN1 Fanconi-associated nuclease 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 2 64.723 56.25 2;3 0.0057684 2 45256 20150910_Q1_SA_NiHu_Masterprac_group15_C 60.364 44.421 2117200 399250 800060 0 0 917880 0 7165 1634 7063 31504;31505;31506;31507 20794;20795 20794 2 SNEDQSMGNWQIK Unmodified 1535.6675 0.66745583 783 P02545;P02545-3;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 115.01 111.83 2 0.0020639 2 73237 20150910_Q1_SA_NiHu_Masterprac_group10_B 72.209 61.263 1958500 0 833450 0 0 0 1125100 7166 783 7064 31508;31509 20796;20797 20796 2 SNEMITNLGK Unmodified 1105.5438 0.54375887 1248 Q7Z2T5 TRMT1L TRMT1-like protein yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 102.58 93.146 2 5.6374E-15 5 62822 20150910_Q1_SA_NiHu_Masterprac_group13_B 119.27 74.411 38205000 5072800 0 15028000 6024700 9995900 2083700 7167 1248 7065 31510;31511;31512;31513;31514 20798;20799;20800;20801;20802 20799 5 SNESVDIQDQEEK Unmodified 1519.6638 0.66381024 1201 Q5UIP0-2;Q5UIP0 RIF1 Telomere-associated protein RIF1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 69.023 61.675 2 1.4635E-46 7 42994 20150910_Q1_SA_NiHu_Masterprac_group13_B 127.32 107.56 17924000 3243200 2797500 3618100 1258100 3040000 3967600 7168 1201 7066 31515;31516;31517;31518;31519;31520;31521 20803;20804;20805;20806;20807;20808;20809 20803 6 SNFSNSADDIKSK Unmodified 1411.6579 0.657937 579 G3V1X9;P45973 CBX5 Chromobox protein homolog 5 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 1 61.141 53.954 2;3 1.9058E-46 9 38448 20150910_Q1_SA_NiHu_Masterprac_group15_B 126.32 105.59 21390000 1674800 3649400 2934900 1718100 2939600 8472700 7169 579 7067 31522;31523;31524;31525;31526;31527;31528;31529;31530;31531;31532 20810;20811;20812;20813;20814;20815;20816;20817;20818 20813 9 SNGELSESPGAGK Unmodified 1231.5681 0.56805936 1061 Q12830-4;Q12830-2;Q12830;F5GXF5;F5H176 BPTF Nucleosome-remodeling factor subunit BPTF yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 52.315 40.935 2 0.035741 1 33291 20150910_Q1_SA_NiHu_Masterprac_group13_C 42.682 28.439 243640 0 0 243640 0 0 0 7170 1061 7068 31533 20819 20819 1 SNGLEGSWSGNVTQK Unmodified 1562.7325 0.73249893 1354 Q92613 PHF16 Protein Jade-3 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 109.84 102.47 2 0.0049454 2 67574 20150910_Q1_SA_NiHu_Masterprac_group13_B 53.168 34.777 4984000 647510 1599100 989610 588960 0 1158900 7171 1354 7069 31534;31535;31536;31537;31538 20820;20821 20820 2 SNGLIHSANVR Unmodified 1166.6156 0.61561868 193 B7Z6Q6;Q99661;Q5JR91 KIF2C Kinesin-like protein KIF2C yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 64.584 57.765 2 0.0024862 3 47054 20150910_Q1_SA_NiHu_Masterprac_group13_C 87.216 47.343 16874000 0 2753600 2258000 705860 3477500 7678800 7172 193 7070 31539;31540;31541;31542;31543 20822;20823;20824 20822 3 SNGLIHSANVRTVNLEK Unmodified 1850.9963 0.99625861 193 B7Z6Q6;Q99661;Q5JR91 KIF2C Kinesin-like protein KIF2C yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 107.47 98.724 3 8.1014E-15 5 72666 20150910_Q1_SA_NiHu_Masterprac_group13_C 101.01 81.255 34286000 8320100 5218900 12487000 1317300 2577100 4365800 7173 193 7071 31544;31545;31546;31547;31548;31549 20825;20826;20827;20828;20829 20826 5 SNGYEDHMAEDCRGDIGR Acetyl (Protein N-term) 2122.8433 0.84326472 1146 Q15717 ELAVL1 ELAV-like protein 1 yes yes 1 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 91.676 89.693 3 0.038239 1 61453 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.681 44.675 1947900 0 865670 0 0 0 1082200 7174 1146 7072 31550;31551 20830 20830 1 SNIHSSVMASPGGLSAVR Unmodified 1768.889 0.88901635 1533 Q9NQW6;Q9NQW6-2;H7C3S1;H7C1C2 ANLN Actin-binding protein anillin yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 117.64 108.39 3 0.00042758 3 74346 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.51 69.309 9540200 991280 497920 818050 381070 1712400 5139500 7175 1533 7073 31552;31553;31554;31555;31556;31557 20831;20832;20833 20832 3 SNKSPWVCLTCSSVHCGR Unmodified 2133.9506 0.9506471 628 Q6JHV3;H0YMI4;Q9Y6I4;H0YL81;B4DV65;H0YMP6;H0YNX9;H0YLJ0 USP3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 117.57 113.01 3 0.030094 1 77094 20150910_Q1_SA_NiHu_Masterprac_group15_B 35.852 28.034 1902600 0 0 0 0 0 1902600 7176 628 7074 31558 20834 20834 1 SNKSPWVCLTCSSVHCGRYVNGHAK Unmodified 2903.3378 0.33776939 628 Q6JHV3;H0YMI4;Q9Y6I4;H0YL81;B4DV65;H0YMP6;H0YNX9 USP3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 3 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 109.14 105.48 6 0.034692 1 72199 20150910_Q1_SA_NiHu_Masterprac_group15_B 19.532 11.023 1845700 0 0 0 0 0 1845700 7177 628 7075 31559 20835 20835 0 SNLTEHEHFHTR Unmodified 1506.6964 0.6963882 1131 Q15072 ZNF146 Zinc finger protein OZF yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 48.897 43.342 3 0.0027045 2 30977 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.268 49.597 4687100 0 619570 626930 591890 1037400 1811300 7178 1131 7076 31560;31561;31562;31563;31564 20836;20837 20836 2 SNMGHPEPASGLAALAK Unmodified 1649.8195 0.8195398 934 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 121.31 116.64 3 0.019602 1 79463 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.12 11.386 1990300 0 0 0 0 0 1990300 7179 934 7077 31565 20838 20838 1 SNNIINETTTRNNALEK Unmodified 1930.9708 0.97083172 419 E9PD53;Q9NTJ3;Q9NTJ3-2;F5H0U7 SMC4 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 4 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 104.03 94.278 3 0.0018643 1 64468 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.148 57.148 6808900 0 2254200 1281800 0 749200 2523700 7180 419 7078 31566;31567;31568;31569 20839 20839 1 SNPEGAEDRAVGAQASVGSR Unmodified 1956.9249 0.92494416 1556 Q9NWV8-3;Q9NWV8 BABAM1 BRISC and BRCA1-A complex member 1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 74.227 66.816 3 0.00021425 2 46461 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.894 63.894 8185800 421020 1845700 2644300 681730 744230 1848800 7181 1556 7079 31570;31571;31572;31573;31574;31575 20840;20841 20841 2 SNQQNLGTIK Unmodified 1101.5778 0.57783619 870 P23921;H0YFI0;E9PD78;E9PL69;F5H861 RRM1 Ribonucleoside-diphosphate reductase large subunit;Ribonucleoside-diphosphate reductase yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 58.525 50.428 2 0.0086316 2 41112 20150910_Q1_SA_NiHu_Masterprac_group13_C 80.706 47.618 6856700 0 3141600 3715000 0 0 0 7182 870 7080 31576;31577 20842;20843 20842 2 SNRDELELELAENRK Unmodified 1814.9123 0.91225421 1121 Q14980-2;Q14980;Q9BTE9;F5H4J1;F5H6Y5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 109.83 100.64 3 0.0097204 1 66626 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.595 41.968 4149200 0 1255700 1514300 513720 865500 0 7183 1121 7081 31578;31579;31580;31581 20844 20844 1 SNRDKECGQLLISENQK Unmodified 2017.9851 0.98510158 152 B4E0G4;Q8IWS0;E9PC97;Q5JRC6;Q8IWS0-2 PHF6 PHD finger protein 6 yes no 0 0 2 By MS/MS By matching By matching By MS/MS By matching By matching 2 1 1 1 1 79.426 71.021 3 0.0072493 4 49365 20150910_Q1_SA_NiHu_Masterprac_group13_B 53.565 35.779 13045000 3350500 0 4761800 2147300 526840 2258100 7184 152 7082 31582;31583;31584;31585;31586;31587 20845;20846;20847;20848 20845 4 SNRPNNNPGGSLRR Acetyl (Protein N-term) 1579.7927 0.7927482 1122 Q14CA3;Q14669;Q14CF1;B4DYJ6;G5E9G6;C9JLD7;C9JLJ5;C9JSX9;F8W9P3 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 1 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 48.874 43.183 3 0.0011499 1 32113 20150910_Q1_SA_NiHu_Masterprac_group10_C 76.759 47.97 34587000 4751400 4167600 5034100 3616800 6165200 10852000 7185 1122 7083 31588;31589;31590;31591;31592;31593 20849 20849 1 SNSLIHTECLSQVQR Unmodified 1770.8683 0.86828091 725 O43929;C9JGH7;C9J2X8;Q53SE3 ORC4;ORC4L Origin recognition complex subunit 4 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 114.63 105.4 3 1.0605E-70 1 72127 20150910_Q1_SA_NiHu_Masterprac_group15_B 135.14 117.18 10317000 1356200 1187800 0 0 2475900 5296800 7186 725 7084 31594;31595;31596;31597 20850 20850 1 SNSQVPQQSHFTK Unmodified 1486.7165 0.71645494 1618 Q9UNY4;Q9UNY4-2 TTF2 Transcription termination factor 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 54.9 48.612 3 0.0014494 8 35254 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.927 53.403 15793000 2579400 2364000 2862900 2242100 2032000 3712500 7187 1618 7085 31598;31599;31600;31601;31602;31603;31604 20851;20852;20853;20854;20855;20856;20857;20858 20854 8 SNTSLPPLPFK Unmodified 1199.655 0.65502388 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 135.22 122.34 2 6.4225E-104 4 89030 20150910_Q1_SA_NiHu_Masterprac_group15_B 155.33 114.23 584830000 14276000 0 247800000 3606300 319160000 0 7188 919;920 7086 31605;31606;31607;31608;31609 20859;20860;20861;20862 20860 4 SNTSLPPLPFKR Unmodified 1355.7561 0.75613491 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.98 131.38 3 0.003387 1 84839 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.694 41.911 3144400 0 3144400 0 0 0 0 7189 919;920 7087 31610 20863 20863 1 SNVESALSHGLK Unmodified 1240.6412 0.64116473 27 F5H101;Q76FK4-2;Q76FK4-4;A6NJK7;Q76FK4;F8WE42;Q76FK4-3 NOL8 Nucleolar protein 8 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 2 101.57 93.233 2;3 0.0015365 4 63668 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.793 65.828 23934000 0 3223200 2839800 890150 2450300 14531000 7190 27 7088 31611;31612;31613;31614;31615;31616;31617 20864;20865;20866;20867 20865 4 SNVLNVNNHITQYVK Unmodified 1741.9111 0.911132 1332 Q8NI77 KIF18A Kinesin-like protein KIF18A yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 130.5 130.2 3 0.0041207 1 83529 20150910_Q1_SA_NiHu_Masterprac_group13_B 53.168 34.703 9518200 0 5410200 0 4108100 0 0 7191 1332 7089 31618;31619 20868 20868 1 SNVLTGLQDSSTDNRAK Unmodified 1804.8915 0.89151877 687 O00257;O00257-3 CBX4 E3 SUMO-protein ligase CBX4 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 102.34 92.744 3 1.1712E-64 9 62954 20150910_Q1_SA_NiHu_Masterprac_group10_C 127.66 121.34 37636000 10089000 4764600 5048100 2837000 5352700 9544400 7192 687 7090 31620;31621;31622;31623;31624;31625;31626;31627 20869;20870;20871;20872;20873;20874;20875;20876;20877 20877 8 SNVQPTAAPGQK Unmodified 1196.6149 0.61494998 111 B4DNM4;C7G535;Q96GD4 AURKB Aurora kinase B yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 38.611 37.59 2 0.032076 1 26587 20150910_Q1_SA_NiHu_Masterprac_group10_B 46.88 10.559 1219700 0 838280 0 106930 0 274470 7193 111 7091 31628;31629;31630 20878 20878 1 SNVSSPATPTASSSSSTTPTRK Unmodified 2150.0451 0.045118877 1063 Q12888;Q12888-2;A6NNK5;F8VY86;H7BZY0 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 63.063 54.211 3 2.7001E-06 6 44182 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.225 33.645 7505600 1998500 0 2548200 1175800 1783200 0 7194 1063 7092 31631;31632;31633;31634;31635 20879;20880;20881;20882;20883;20884 20882 5 SPAFALKNR Unmodified 1002.5611 0.56106391 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 74.579 65.705 2 5.3035E-06 2 46049 20150910_Q1_SA_NiHu_Masterprac_group15_B 113.26 85.038 5978900 500970 1273300 932000 0 826560 2446100 7195 1611 7093 31636;31637;31638;31639;31640 20885;20886 20885 2 SPAVKPAAAPKQPVGGGQK Unmodified 1787.0054 0.0053667345 1120 Q14978;Q14978-3;Q14978-2 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 56.365 50.148 3 0.0037662 1 41429 20150910_Q1_SA_NiHu_Masterprac_group15_C 58.712 31.449 3193500 429620 527390 0 0 1348900 887640 7196 1120 7094 31641;31642;31643;31644 20887 20887 1 SPLLAGGSPPQPVVPAHKDK Unmodified 1994.0949 0.094910023 144 B4DYB4;Q8NFH5;C9JIY9;C9IYQ7;F8WCF5;F8WEL4 NUP35 Nucleoporin NUP53 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 114.59 105.44 3 4.3529E-11 3 74759 20150910_Q1_SA_NiHu_Masterprac_group15_C 92.679 80.925 13133000 2315300 2076800 1443400 1025200 2189300 4082600 7197 144 7095 31645;31646;31647;31648;31649;31650 20888;20889;20890 20889 3 SPLSALARK Unmodified 941.56581 0.56581494 682 I3L1L3;Q9BQG0;Q9BQG0-2;I3L2H8 MYBBP1A Myb-binding protein 1A yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 86.077 79.341 2 0.018997 1 54581 20150910_Q1_SA_NiHu_Masterprac_group15_B 105.52 65.169 6422600 0 770820 0 0 2266600 3385100 7198 682 7096 31651;31652;31653 20891 20891 1 SPLVSDGGSPSR Unmodified 1157.5677 0.56766543 1672 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 2 66.683 65.529 2 0.0018669 1 45713 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.679 15.727 6028700 0 0 0 0 0 6028700 + 7199 1672 7097 31654;31655 20892 20892 1 SPPHCELMAGHLR Unmodified 1503.7075 0.70748693 1281 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 82.135 80.58 3 0.027566 1 55376 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.594 32.549 1324900 0 0 0 0 0 1324900 7200 1281 7098 31656 20893 20893 1 SPPSYSVLYPSSDPK Unmodified 1622.7828 0.78280317 1297 Q8N3V7-2;Q8N3V7-3;Q8N3V7 SYNPO Synaptopodin yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 129.46 128.85 2 0.0026064 1 82444 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.885 35.523 1465300 0 1465300 0 0 0 0 7201 1297 7099 31657 20894 20894 1 SPQDLASTSR Unmodified 1060.5149 0.51490158 1519 Q9HC52;C9J6K3;C9JM54 CBX8 Chromobox protein homolog 8 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 48.303 47.349 2 0.0057609 1 33751 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.344 68.448 693310 0 0 0 0 0 693310 7202 1519 7100 31658 20895 20895 1 SPQFINLK Unmodified 945.52837 0.5283668 1353 Q92576-2;Q92576 PHF3 PHD finger protein 3 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 131.23 115.54 2 0.02554 1 76769 20150910_Q1_SA_NiHu_Masterprac_group10_C 75.043 20.432 3566700 3566700 0 0 0 0 0 7203 1353 7101 31659 20896 20896 1 SPQPDPVDTPASTK Unmodified 1438.694 0.69398816 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 71.452 65.82 2 0.0014485 1 45943 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.261 55.178 2019800 0 0 0 178760 630400 1210600 7204 919;920 7102 31660;31661;31662 20897 20897 1 SPQPDPVDTPASTKQRPK Unmodified 1948.0014 0.0014035686 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 61.531 54.754 4 0.0082536 1 38634 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.633 30.584 7216100 510030 1413800 1253700 634970 1772800 1630800 7205 919;920 7103 31663;31664;31665;31666;31667;31668 20898 20898 1 SPQPDPVGTPTIFKPQSK Unmodified 1923.0102 0.010177341 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 127.82 127.22 3 0.02784 1 81188 20150910_Q1_SA_NiHu_Masterprac_group10_B 36.504 36.504 1194300 0 1194300 0 0 0 0 7206 919;920 7104 31669 20899 20899 1 SPQPDPVKTPTSSK Unmodified 1467.7569 0.75692277 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 57.013 50.716 3 0.02516 1 36208 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.316 31.866 2628900 0 336420 354490 535650 369810 1032500 7207 919;920 7105 31670;31671;31672;31673;31674 20900 20900 1 SPQSDPADTPTNTK Unmodified 1457.6634 0.66341631 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 44.358 37.99 2 0.0023386 3 27178 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.244 47.222 2465800 0 368880 509340 0 370000 1217600 7208 919;920 7106 31675;31676;31677;31678 20901;20902;20903 20903 3 SPQSDPADTPTNTKQRPK Unmodified 1966.9708 0.97083172 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 40.438 34.974 3 0.010306 1 28444 20150910_Q1_SA_NiHu_Masterprac_group13_C 50.077 40.814 2763800 321420 0 598280 130120 542670 1171300 7209 919;920 7107 31679;31680;31681;31682;31683 20904 20904 1 SPSDLHISPLAK Unmodified 1263.6823 0.68230126 212 B7ZM82;B3KVH1;O95785;O95785-2 WIZ Protein Wiz yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 3 3 113.71 104.96 2;3 1.0686E-07 11 74562 20150910_Q1_SA_NiHu_Masterprac_group15_C 105.36 77.928 67929000 10316000 11111000 6588700 7745800 14066000 18101000 7210 212 7108 31684;31685;31686;31687;31688;31689;31690;31691;31692;31693;31694;31695;31696;31697;31698 20905;20906;20907;20908;20909;20910;20911;20912;20913;20914;20915 20911 10 SPSISNMAALSR Unmodified 1232.6183 0.6183208 1483 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 124.1 119.34 2 0.001819 1 81010 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.92 51.916 1060300 0 0 0 0 0 1060300 7211 1483 7109 31699 20916 20916 1 SPVPSAFSDQSR Unmodified 1276.6048 0.60477922 1623 Q9UQ35;F5GWZ7;Q9UQ35-2;I3L3Q8 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 93.84 91.707 2 0.032584 1 62573 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.405 24.498 722170 0 286300 0 0 0 435860 7212 1623 7110 31700;31701 20917 20917 0 SQAAPGSSPCRGHVLR Unmodified 1678.8322 0.83217017 423 Q8N556;E9PDT7 AFAP1 Actin filament-associated protein 1 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 51.465 45.507 3 0.01723 2 32630 20150910_Q1_SA_NiHu_Masterprac_group10_B 41.495 27.063 4387300 521580 622150 840460 497890 869720 1035500 7213 423 7111 31702;31703;31704;31705;31706;31707 20918;20919 20918 2 SQAAPGSSPCRGHVLRK Unmodified 1806.9271 0.92713319 423 Q8N556;E9PDT7 AFAP1 Actin filament-associated protein 1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 40.561 35.607 3 0.028886 1 29058 20150910_Q1_SA_NiHu_Masterprac_group13_C 43.914 22.66 4661100 0 729220 948770 726320 772800 1484000 7214 423 7112 31708;31709;31710;31711;31712 20920 20920 1 SQAEPLSGNKEPLADTSSNQQK Unmodified 2328.1193 0.11934645 941 P49750-3;P49750;P49750-4;H0YIQ2 YLPM1 YLP motif-containing protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 88.253 79.39 3 4.9402E-06 4 54365 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.094 52.853 8211900 1937900 1361200 1339000 1829600 1744100 0 7215 941 7113 31713;31714;31715;31716;31717 20921;20922;20923;20924 20923 4 SQAIYLESKDNQK Unmodified 1522.7627 0.76273643 1500 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 71.036 61.761 3 0.027871 1 43436 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.314 46.171 683910 0 350220 0 0 333690 0 7216 1500 7114 31718;31719 20925 20925 0 SQAPCANKDEADLSSK Unmodified 1719.7734 0.77337747 654 H7BXV2;Q96SK2-3;Q96SK2-2;Q96SK2 TMEM209 Transmembrane protein 209 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 56.517 49.549 3 0.00050394 3 40842 20150910_Q1_SA_NiHu_Masterprac_group15_C 72.315 58.751 3472300 0 0 632510 622040 1102500 1115300 7217 654 7115 31720;31721;31722;31723 20926;20927;20928 20928 3 SQAPGQPGASQWGSR Unmodified 1512.707 0.70695288 1382 Q96EP5-2;Q96EP5 DAZAP1 DAZ-associated protein 1 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 2 1 1 1 1 1 79.332 71.712 2 0.00064458 3 51267 20150910_Q1_SA_NiHu_Masterprac_group10_C 74.296 56.631 21108000 3332300 3016500 1632400 1848700 3537100 7740600 7218 1382 7116 31724;31725;31726;31727;31728;31729;31730 20929;20930;20931 20931 3 SQAQATISFPK Unmodified 1176.6139 0.61388734 1431 Q99741 CDC6 Cell division control protein 6 homolog yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 116.32 105.64 2 6.1909E-05 1 72337 20150910_Q1_SA_NiHu_Masterprac_group15_B 100.93 27.432 8829800 1329800 0 1474400 691450 1602700 3731400 7219 1431 7117 31731;31732;31733;31734;31735 20932 20932 1 SQASTTVDINTQVEKEVPPGSAIIHIK Unmodified 2861.5135 0.5134516 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 133.07 132.47 3 0.010534 1 86069 20150910_Q1_SA_NiHu_Masterprac_group10_B 33.649 26.454 11527000 0 11527000 0 0 0 0 7220 1109 7118 31736 20933 20933 1 SQAVQTNGTQPLSK Acetyl (Protein N-term) 1499.758 0.7579854 1424 Q99496;B3KRH1 RNF2 E3 ubiquitin-protein ligase RING2 yes no 1 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 90.759 82.81 2 5.4696E-42 7 56455 20150910_Q1_SA_NiHu_Masterprac_group15_B 120.32 78.32 14112000 2910500 2039900 2526400 1211600 1964000 3459100 7221 1424 7119 31737;31738;31739;31740;31741;31742;31743 20934;20935;20936;20937;20938;20939;20940 20936 6 SQCALEEYVR Unmodified 1253.571 0.57103625 871;819 P24468;P24468-3;P24468-2;P10589 NR2F2;NR2F1 COUP transcription factor 2;COUP transcription factor 1 no no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 119.86 110.99 2 0.0084831 1 72685 20150910_Q1_SA_NiHu_Masterprac_group10_B 82.494 47.799 5541800 596080 2839000 1660200 446610 0 0 7222 871;819 7120 31744;31745;31746;31747 20941 20941 1 SQDATFSPGSEQAEKSPGPIVSR Unmodified 2374.1401 0.14008189 222 C9J0I9;Q86WB0-2;Q86WB0 ZC3HC1 Nuclear-interacting partner of ALK yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 110.68 102.64 3 0.0093351 2 67824 20150910_Q1_SA_NiHu_Masterprac_group10_B 39.171 31.079 12289000 0 2582100 2017500 1961900 982180 4745200 7223 222 7121 31748;31749;31750;31751;31752 20942;20943 20943 2 SQDDEIGDGTTGVVVLAGALLEEAEQLLDR Unmodified 3112.5412 0.5411825 202 B7ZAR1;E9PCA1;P48643 CCT5 T-complex protein 1 subunit epsilon yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 136.12 126.84 3 2.2254E-63 4 84861 20150910_Q1_SA_NiHu_Masterprac_group15_C 101.87 60.887 381090000 0 370480000 0 0 10615000 0 7224 202 7122 31753;31754 20944;20945;20946;20947 20945 4 SQDKDVNEGETSDGVRK Unmodified 1862.8606 0.86061257 1656 Q9Y5Q9-2;Q9Y5Q9 GTF3C3 General transcription factor 3C polypeptide 3 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 2 32.043 28.97 3;4 4.0246E-07 3 23224 20150910_Q1_SA_NiHu_Masterprac_group13_C 90.872 80.058 6888200 0 1895800 1299600 0 0 3692800 7225 1656 7123 31755;31756;31757;31758 20948;20949;20950 20948 3 SQDSMSSDTARTSPVTAR Unmodified 1895.8643 0.86431774 873 P25205;Q7Z6P5;E9PF11 MCM3 DNA replication licensing factor MCM3 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 2 1 1 1 1 1 69.471 62.08 3 0.0017567 4 43537 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.339 44.913 14796000 2123800 2129700 1617100 1037900 3151500 4735800 7226 873 7124 31759;31760;31761;31762;31763;31764;31765 20951;20952;20953;20954 20952 4 SQDVQRESEPLREK Unmodified 1699.8489 0.84892567 1618 Q9UNY4;Q9UNY4-2 TTF2 Transcription termination factor 2 yes no 0 0 2 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 2 2 2 1 2 50.478 45.289 3;4 0.017677 3 31770 20150910_Q1_SA_NiHu_Masterprac_group13_B 45.347 19.924 14727000 278400 2329700 4022100 3064200 1282200 3750700 7227 1618 7125 31766;31767;31768;31769;31770;31771;31772;31773;31774;31775 20955;20956;20957 20955 3 SQEATEAAPSCVGDMADTPRDAGLK Unmodified 2576.1483 0.14828009 1593 Q9UHD8-3;Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8 SEPT9 Septin-9 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 126.84 116.61 3 0.0028852 2 76226 20150910_Q1_SA_NiHu_Masterprac_group10_C 43.233 36.288 3405900 2069100 0 0 0 0 1336800 7228 1593 7126 31776;31777 20958;20959 20959 2 SQEEDQPIIIK Unmodified 1298.6718 0.67179615 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 102.62 95.949 2 0.0033321 2 65597 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.182 45.569 4011400 0 0 0 710820 329230 2971300 7229 1325 7127 31778;31779;31780 20960;20961 20961 2 SQEEPKDTFEHDPSESIDEFNK Unmodified 2607.1249 0.12488534 1563;452 Q9NYF8-2;Q9NYF8;Q9NYF8-4;E9PK09;E9PQN2;E9PKI6;E9PJA7;Q9NYF8-3;E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 127.21 115.85 3;4 8.5411E-134 9 76323 20150910_Q1_SA_NiHu_Masterprac_group10_C 138.04 127.41 206740000 122380000 3998300 65897000 0 6204800 8258500 7230 1563;452 7128 31781;31782;31783;31784;31785;31786;31787;31788;31789;31790 20962;20963;20964;20965;20966;20967;20968;20969;20970 20970 9 SQEITTNSEQRCPLK Unmodified 1789.8629 0.86286118 1431 Q99741 CDC6 Cell division control protein 6 homolog yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 2 1 1 1 1 1 71.229 63.781 3 0.00262 3 46312 20150910_Q1_SA_NiHu_Masterprac_group10_C 62.035 49.297 9530800 2063400 1232900 2024700 893000 1432900 1883900 7231 1431 7129 31791;31792;31793;31794;31795;31796;31797 20971;20972;20973 20972 3 SQEQEVLER Unmodified 1116.5411 0.54111633 364 E7EQT4;Q9UKV3;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 63.172 58.384 2 0.018678 2 41158 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.552 27.687 3784100 0 1168700 345950 316720 0 1952700 7232 364 7130 31798;31799;31800;31801 20974;20975 20974 2 SQFGSASHSEAVQEVRK Unmodified 1845.8969 0.8969385 1292 Q8IYW5 RNF168 E3 ubiquitin-protein ligase RNF168 yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 67.071 61.114 3 0.0017254 7 44196 20150910_Q1_SA_NiHu_Masterprac_group10_C 50.874 35.353 30206000 5258400 8208300 0 2918800 4140000 9680300 7233 1292 7131 31802;31803;31804;31805;31806;31807 20976;20977;20978;20979;20980;20981;20982 20982 7 SQGCSEQVLTVLK Unmodified 1447.7341 0.73407884 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 130.84 130.53 2 3.1691E-15 1 83582 20150910_Q1_SA_NiHu_Masterprac_group10_B 107.35 82.848 90824000 0 84230000 0 6594600 0 0 7234 1012 7132 31808;31809 20983 20983 1 SQGDMQDLNGNNQSVTR Unmodified 1862.8177 0.8177019 602 G8JLH9;P40763-2;P40763 STAT3 Signal transducer and activator of transcription 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 73.33 72.075 2 0.035736 1 50005 20150910_Q1_SA_NiHu_Masterprac_group15_B 36.504 26.373 685440 0 0 0 0 0 685440 7235 602 7133 31810 20984 20984 1 SQGDNNVSLVEEFRK Unmodified 1720.838 0.83802663 628 Q6JHV3;H0YMI4;Q9Y6I4;B3KMX7;H0YLB7;H0YKU8;F5H1A6 USP3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 3 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 124.8 122.94 3 0.0021365 2 78665 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.011 45.69 13026000 0 2126900 0 1003300 0 9896000 7236 628 7134 31811;31812;31813 20985;20986 20986 1 SQGGVQPIPSQGGK Unmodified 1338.6892 0.68917755 1566 Q9NZB2;Q9NZB2-6 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 64.34 57.521 2 0.0011058 4 46737 20150910_Q1_SA_NiHu_Masterprac_group13_C 76.311 49.558 5792800 0 755620 1136900 707080 1586300 1606900 7237 1566 7135 31814;31815;31816;31817;31818 20987;20988;20989;20990 20987 4 SQHDILQMICSK Unmodified 1458.6959 0.69591919 919;920 P46013;F5H4V4;P46013-2;E7EN66 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 133.14 124.27 2;3 8.0074E-118 6 85648 20150910_Q1_SA_NiHu_Masterprac_group10_B 157.33 133.06 202950000 21928000 34596000 14701000 24031000 10679000 97016000 7238 919;920 7136 31819;31820;31821;31822;31823;31824;31825 20991;20992;20993;20994;20995;20996 20995 5 SQIHDIVLVGGSTR Unmodified 1480.7998 0.79979063 824 P11142;E9PKE3;P11142-2;E9PNE6;E9PN89;A8K7Q2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 126.85 111.16 3 0.0022936 1 73763 20150910_Q1_SA_NiHu_Masterprac_group10_C 62.357 44.771 1018700 1018700 0 0 0 0 0 7239 824 7137 31826 20997 20997 1 SQIHDIVLVGGSTRIPK Unmodified 1819.0316 0.031581485 824 P11142;E9PKE3;P11142-2;E9PNE6;E9PN89;A8K7Q2 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 131 121.5 3;4 8.4855E-45 12 85800 20150910_Q1_SA_NiHu_Masterprac_group15_B 116.61 103.83 159910000 17038000 20402000 28583000 17012000 7237200 69642000 7240 824 7138 31827;31828;31829;31830;31831;31832;31833;31834;31835;31836;31837;31838 20998;20999;21000;21001;21002;21003;21004;21005;21006;21007;21008;21009 21001 12 SQKENVLQYCRK Unmodified 1551.7828 0.78276036 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 62.72 54.588 3 2.1493E-51 3 38882 20150910_Q1_SA_NiHu_Masterprac_group15_B 136.81 118.94 50116000 4464300 9091300 22173000 0 5193400 9193900 7241 919 7139 31839;31840;31841;31842;31843 21010;21011;21012 21011 3 SQLDRTVCISDAGACGETLSVTSEENSLVKK Unmodified 3353.6079 0.60789863 769 O95243-2 MBD4 Methyl-CpG-binding domain protein 4 no no 0 0 2 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 132.37 132.07 4 4.3261E-06 2 85361 20150910_Q1_SA_NiHu_Masterprac_group13_B 48.607 41.147 50552000 0 38638000 0 11915000 0 0 7242 769 7140 31844;31845 21013;21014 21013 1 SQLLAPPPPSAPPGNK Unmodified 1569.8515 0.85149185 941 P49750-3;P49750;P49750-4;F8VU51 YLPM1 YLP motif-containing protein 1 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 121.04 108.84 2 0.00017801 1 72799 20150910_Q1_SA_NiHu_Masterprac_group10_C 71.354 41.774 2231000 1039800 0 0 0 877250 313890 7243 941 7141 31846;31847;31848 21015 21015 0 SQLLKFVEK Unmodified 1090.6386 0.63864553 892 P33992;B1AHB1;E7EQY5 MCM5 DNA replication licensing factor MCM5 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 120.03 111.98 2 1.0544E-41 3 73495 20150910_Q1_SA_NiHu_Masterprac_group10_C 127.83 31.717 27332000 2637800 2773100 17409000 2216500 0 2295900 7244 892 7142 31849;31850;31851;31852;31853 21016;21017;21018 21018 3 SQLQGPSSSEYWK Unmodified 1495.6943 0.69432251 906 P39880-2;P39880;P39880-3;P39880-4;P39880-5;P39880-6 CUX1 Homeobox protein cut-like 1 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 117 107.84 2 0.0013716 3 71014 20150910_Q1_SA_NiHu_Masterprac_group10_B 89.44 72.273 6964200 0 1276300 1634800 1030000 3023000 0 7245 906 7143 31854;31855;31856;31857 21019;21020;21021 21021 3 SQNEAVCEGLR Unmodified 1261.5721 0.57209888 676 H9KV59;O43663;O43663-2 PRC1 Protein regulator of cytokinesis 1 no no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 66.193 63.182 2 0.02083 1 44275 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.261 30.193 530610 0 530610 0 0 0 0 7246 676 7144 31858 21022 21022 1 SQNGEFMTHKLK Unmodified 1418.6976 0.69763375 396 Q05682-5;E9PGZ1;Q05682-4;F5H1Z9;E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;C9J813 CALD1 Caldesmon yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 60.146 58.991 3 0.015072 1 41580 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.04 28.382 1112300 0 0 0 0 0 1112300 7247 396 7145 31859 21023 21023 1 SQPAASTLESK Unmodified 1117.5615 0.56151742 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 2 1 1 1 1 52.078 46.541 2 0.0070178 3 33315 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.216 35.346 68637000 5943500 14543000 25273000 3547000 3536600 15793000 7248 919;920 7146 31860;31861;31862;31863;31864;31865;31866 21024;21025;21026 21024 3 SQPDPVDTPTSSKPQSK Unmodified 1797.8745 0.87447172 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 1 1 1 1 1 57.384 50.809 3 0.0016964 4 35482 20150910_Q1_SA_NiHu_Masterprac_group10_C 59.728 47.527 256440000 39167000 35734000 57193000 19187000 31072000 74088000 7249 919;920 7147 31867;31868;31869;31870;31871;31872;31873 21027;21028;21029;21030 21029 4 SQPERDWVLNEFR Unmodified 1674.8114 0.81141795 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 133.44 132.83 3 0.0085254 1 86480 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.267 34.357 52770000 0 52770000 0 0 0 0 7250 1361;629 7148 31874 21031 21031 1 SQPGQKPAASPRPR Acetyl (Protein N-term) 1517.8063 0.806273 375 G5E9D3;P20810-5;E7ESM9;P20810-7;P20810-6;F8W7E0;E9PSG1 CAST Calpastatin yes no 1 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 40.055 36.103 3 0.029436 1 25230 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.825 23.863 25213000 4176600 3779300 0 3231400 6114300 7911300 7251 375 7149 31875;31876;31877;31878;31879 21032 21032 1 SQPLERPLGTADPRLDK Unmodified 1892.0116 0.011574324 1404 Q96L73-2;Q96L73-3;Q96L73 NSD1 Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 109.48 98.299 4 0.029164 1 72359 20150910_Q1_SA_NiHu_Masterprac_group13_C 37.182 23.235 6933000 1384600 0 1619400 0 0 3929000 7252 1404 7150 31880;31881;31882 21033 21033 1 SQPLISLTEHTK Unmodified 1352.73 0.72997974 1504 Q9H967 WDR76 WD repeat-containing protein 76 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 1 2 1 116.49 106.86 2;3 0.0047799 4 75703 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.602 29.419 12310000 0 2663300 2384400 1685900 3344300 2232400 7253 1504 7151 31883;31884;31885;31886;31887;31888;31889;31890 21034;21035;21036;21037 21036 4 SQPNHTPAGPPGPSSNPVSNGK Unmodified 2126.0141 0.01409352 1436 Q9BQ15-2;Q9BQ15 NABP2 SOSS complex subunit B1 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 75.948 68.649 3 1.2381E-07 5 47953 20150910_Q1_SA_NiHu_Masterprac_group10_B 82.635 74.145 14745000 0 4333500 2846600 1220100 2531800 3813100 7254 1436 7152 31891;31892;31893;31894;31895 21038;21039;21040;21041;21042 21042 5 SQPNTMTSLQNSK Unmodified 1434.6773 0.67729224 1415 Q96QE3;Q96QE3-2 ATAD5 ATPase family AAA domain-containing protein 5 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 73.715 64.741 2 0.010347 1 45122 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.196 40.727 5677100 0 1059600 1439000 0 797180 2381300 7255 1415 7153 31896;31897;31898;31899 21043 21043 1 SQPPARLISGEEHFSSK Unmodified 1868.9381 0.93807503 468 E9PQV9;Q9BTE7;H0YCN4 DCUN1D5 DCN1-like protein 5 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 97.152 93.417 4 0.014138 2 62823 20150910_Q1_SA_NiHu_Masterprac_group13_B 49.537 23.123 24136000 10026000 7796400 0 3644600 0 2668900 7256 468 7154 31900;31901;31902;31903 21044;21045 21044 0 SQPPARLISGEEHFSSKK Unmodified 1997.033 0.033038048 468 E9PQV9;Q9BTE7;H0YCN4 DCUN1D5 DCN1-like protein 5 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 89.494 82.054 4 0.023629 1 62986 20150910_Q1_SA_NiHu_Masterprac_group13_C 36.775 21.142 8648800 0 2039200 1713400 2008700 1594700 1292800 7257 468 7155 31904;31905;31906;31907;31908 21046 21046 1 SQPVHILAVRR Unmodified 1274.7571 0.75713796 1077 Q13322-3;Q13322-2;Q13322-4;Q13322 GRB10 Growth factor receptor-bound protein 10 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 84.83 76.082 3 0.011604 1 57707 20150910_Q1_SA_NiHu_Masterprac_group15_C 54.198 40.389 2498200 0 0 0 0 1394100 1104100 7258 1077 7156 31909;31910 21047 21047 1 SQQCQGNELTRPSASSQEK Unmodified 2133.9709 0.97090808 1618 Q9UNY4;Q9UNY4-2 TTF2 Transcription termination factor 2 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 50.601 49.413 3 0.017311 4 35461 20150910_Q1_SA_NiHu_Masterprac_group10_B 38.546 24.922 6491600 0 1981400 0 1761100 0 2749100 7259 1618 7157 31911;31912;31913 21048;21049;21050;21051 21051 4 SQQERDWVLNEFK Unmodified 1677.8111 0.8110836 853 P17844;E7ETL9 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 2 2 133.24 131.13 2;3 2.5574E-90 5 88556 20150910_Q1_SA_NiHu_Masterprac_group15_B 143.97 66.078 303910000 0 86961000 0 24570000 0 192380000 7260 853 7158 31914;31915;31916;31917;31918 21052;21053;21054;21055;21056 21055 4 SQQQPTPVTPK Unmodified 1209.6354 0.63535107 597 O95251-2;G5E9K7;O95251 KAT7 Histone acetyltransferase KAT7 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 51.598 46.955 2 0.00023773 2 33579 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.898 71.417 4134500 377290 736540 748440 395530 0 1876700 7261 597 7159 31919;31920;31921;31922;31923 21057;21058 21058 2 SQQTSFQSSPCNKSPK Unmodified 1809.8316 0.83156105 1066 Q12986;Q12986-2;F5GXD0;Q12986-3 NFX1 Transcriptional repressor NF-X1 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 51.364 45.407 3 0.00029458 3 31688 20150910_Q1_SA_NiHu_Masterprac_group13_B 83.856 63.773 17984000 2633900 2790200 2914200 2845400 2950700 3849500 7262 1066 7160 31924;31925;31926;31927;31928;31929 21059;21060;21061 21059 3 SQRNTAGAQPQDDSIGGR Unmodified 1856.8725 0.87251466 1122 Q14CA3;Q14669;B4DYJ6;G5E9G6;C9JLD7;C9JLJ5;C9JSX9;F8W9P3 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 46.29 44.508 3 0.025584 1 31936 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.157 23.739 1922900 0 570740 0 0 0 1352200 7263 1122 7161 31930;31931 21062 21062 1 SQRYESLKGVDPK Unmodified 1505.7838 0.78380622 930 P47914 RPL29 60S ribosomal protein L29 yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 68.453 61.242 3 0.0087416 1 44068 20150910_Q1_SA_NiHu_Masterprac_group10_C 64.534 32.653 8830300 1325400 572720 756450 672920 2505900 2997000 7264 930 7162 31932;31933;31934;31935;31936;31937 21063 21063 1 SQSAAVTPSSTTSSTR Unmodified 1566.7485 0.74854293 1151 Q16186;E9PEC0 ADRM1 Proteasomal ubiquitin receptor ADRM1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 50.741 43.746 2 0.015399 1 31315 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.314 42.314 3153300 0 699540 436840 0 635930 1381000 7265 1151 7163 31938;31939;31940;31941 21064 21064 1 SQSEPSEQDGVLDLSTK Unmodified 1818.8483 0.84831655 1400 Q96JN0-2;Q96JN0 LCOR Ligand-dependent corepressor yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 125.58 114.35 2 7.9151E-110 2 76368 20150910_Q1_SA_NiHu_Masterprac_group10_C 138.77 101.42 6343200 3633400 0 2181300 528400 0 0 7266 1400 7164 31942;31943;31944 21065;21066 21066 1 SQSLLTFSTKSPEEK Unmodified 1680.857 0.85703074 1279 Q8IWA0 WDR75 WD repeat-containing protein 75 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 121.36 116.7 3 0.0016128 2 79369 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.413 53.533 1305200 0 0 0 0 0 1305200 7267 1279 7165 31945 21067;21068 21067 2 SQSRGNSQLLLS Unmodified 1288.6735 0.67352749 923 P46087;Q3KQS4;P46087-2 NOP2 Putative ribosomal RNA methyltransferase NOP2 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 2 1 1 1 96.201 88.19 2 0.010618 2 59439 20150910_Q1_SA_NiHu_Masterprac_group10_C 65.842 29.521 9590700 3428000 1512200 0 0 3189200 1461400 7268 923 7166 31946;31947;31948;31949;31950 21069;21070 21070 2 SQSSHSYDDSTLPLIDRNQK Unmodified 2290.0826 0.082567016 275 O60716-32;O60716-31;O60716-29;O60716-27;O60716-30;O60716-28;O60716-26;O60716-25;O60716-24;O60716-23;O60716-21;O60716-19;O60716-22;O60716-20;O60716-16;O60716-18;O60716-15;O60716-17;O60716-13;O60716-11;O60716-14;O60716-12;O60716-10;O60716-8;O60716-9;E9PIE5;O60716-7;O60716-5;C9JZR2;O60716-3;O60716-6;F8WA43;O60716-4;O60716-2;O60716;H0YC95 CTNND1 Catenin delta-1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 115.13 105.43 4 0.0025011 2 76643 20150910_Q1_SA_NiHu_Masterprac_group13_C 49.708 40.772 7271400 0 0 2560900 848550 824700 3037300 7269 275 7167 31951;31952;31953;31954 21071;21072 21071 2 SQSSIVPEEEQAANKGEEK Unmodified 2058.9706 0.97055695 85 C0IMW5;B4DFR4;Q969G3-2;B4DGM3;Q969G3;H7C048;H7BXG8;H7C3F6 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 82.343 73.846 3 0.0043316 3 56448 20150910_Q1_SA_NiHu_Masterprac_group15_C 47.088 31.073 14474000 0 0 2998800 3041800 4341400 4092200 7270 85 7168 31955;31956;31957;31958 21073;21074;21075 21075 3 SQSSIVPEEEQAANKGEEKK Unmodified 2187.0655 0.065519968 85 C0IMW5;B4DFR4;Q969G3-2;B4DGM3;Q969G3;H7C048;H7BXG8;H7C3F6 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 2 2 72.154 64.546 4 0.0023674 2 51989 20150910_Q1_SA_NiHu_Masterprac_group13_C 49.036 29.364 10551000 1141500 879040 1389800 696640 2391000 4052900 7271 85 7169 31959;31960;31961;31962;31963;31964;31965;31966 21076;21077 21076 2 SQTSQAVTGGHTQIQAGSHTETVEQDR Unmodified 2852.3285 0.32850438 1582 Q9UBG3 CRNN Cornulin yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 87.777 71.735 3 0.012772 1 55121 20150910_Q1_SA_NiHu_Masterprac_group15_C 32.065 19.836 1471200 0 0 0 0 1471200 0 7272 1582 7170 31967 21078 21078 1 SQTTLQEQLKK Unmodified 1302.7143 0.71432967 1299 Q8N4T4-2;Q8N4T4-4;Q8N4T4;Q8N4T4-3 ARHGEF39 Rho guanine nucleotide exchange factor 39 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 60.042 58.888 3 0.011491 1 41475 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.343 23.78 663690 0 0 0 0 0 663690 7273 1299 7171 31968 21079 21079 1 SQVDAQLLTVQK Unmodified 1328.73 0.72997974 634 O75150-4;H3BP71;O75150;F8W8Z4;F6SYU7 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 117.42 114.69 2 0.0024262 1 77957 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.649 41.716 4189000 0 1139400 0 0 0 3049500 7274 634 7172 31969;31970 21080 21080 1 SQVFSTAADGQTQVEIK Unmodified 1807.8952 0.89520716 187 B7Z4V2;P38646;F5H3L8 HSPA9 Stress-70 protein, mitochondrial yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 131.51 115.83 2 0.014898 1 77135 20150910_Q1_SA_NiHu_Masterprac_group10_C 40.968 16.487 2149900 2149900 0 0 0 0 0 7275 187 7173 31971 21081 21081 1 SQVPAAQPTAETKPATAAVPTSQSVK Unmodified 2564.3446 0.34459536 1604 Q9UKY1;H0YB50 ZHX1 Zinc fingers and homeoboxes protein 1 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 101.79 96.227 3 0.00010796 5 65846 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.364 38.469 20367000 0 4404400 3185200 719850 0 12058000 7276 1604 7174 31972;31973;31974;31975;31976 21082;21083;21084;21085;21086 21086 5 SQVVAGTNYFIK Unmodified 1325.698 0.69795133 786 P04080 CSTB Cystatin-B yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 131.99 123.72 2 2.5968E-193 6 87052 20150910_Q1_SA_NiHu_Masterprac_group15_B 176.32 144.97 275600000 0 46319000 35601000 30698000 66373000 96610000 7277 786 7175 31977;31978;31979;31980;31981 21087;21088;21089;21090;21091;21092 21089 6 SQWVAPSSVVLHDEGQNEEDVEK Unmodified 2581.1932 0.19323968 577 G3V1J5;Q9Y2L1-2;Q9Y2L1;F2Z2C0 DIS3 Exosome complex exonuclease RRP44 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 132.31 123.74 3 8.766E-85 4 84711 20150910_Q1_SA_NiHu_Masterprac_group10_B 123.17 97.764 58451000 10903000 10694000 17867000 18986000 0 0 7278 577 7176 31982;31983;31984;31985 21093;21094;21095;21096 21095 4 SQYEQLAEQNRK Unmodified 1492.727 0.72701962 298 P13645;CON__P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 2 2 64.042 58.597 2;3 2.6883E-18 5 41618 20150910_Q1_SA_NiHu_Masterprac_group10_B 113.67 74.491 93264000 1758500 34920000 0 22008000 9761600 24816000 + 7279 298 7177 31986;31987;31988;31989;31990;31991;31992;31993;31994;31995 21097;21098;21099;21100;21101 21100 5 SQYPNQPSRFGK Unmodified 1407.6895 0.6895119 819 P10589 NR2F1 COUP transcription factor 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 67.247 60.662 3 0.0055191 1 42541 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.966 45.829 4700400 0 1589000 1332100 0 0 1779200 7280 819 7178 31996;31997;31998 21102 21102 1 SQYPNQPTRFGK Unmodified 1421.7052 0.70516197 871 P24468;P24468-3;P24468-2 NR2F2 COUP transcription factor 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 77.296 66.234 3 0.0065773 1 46277 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.799 31.321 2521000 0 0 533450 0 577950 1409600 7281 871 7179 31999;32000;32001 21103 21103 1 SRAEAALEEESR Unmodified 1346.6426 0.64262129 85 C0IMW5;B4DFR4;Q969G3-2;B4DGM3;Q969G3 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 60.989 52.992 3 0.013175 4 43547 20150910_Q1_SA_NiHu_Masterprac_group13_C 56.569 35.537 6668500 0 1386300 795240 0 1958700 2528300 7282 85 7180 32002;32003;32004;32005 21104;21105;21106;21107 21104 4 SRCPDGSTCCELPSGK Unmodified 1809.7444 0.7444023 885 P28799-2;P28799 GRN Granulins;Acrogranin;Paragranulin;Granulin-1;Granulin-2;Granulin-3;Granulin-4;Granulin-5;Granulin-6;Granulin-7 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 61.244 57.266 3 0.00046148 3 41065 20150910_Q1_SA_NiHu_Masterprac_group10_B 82.709 72.713 2909500 796910 984830 0 0 0 1127800 7283 885 7181 32006;32007;32008 21108;21109;21110 21109 2 SRDATPPVSPINMEDQER Unmodified 2040.9535 0.9534671 848 P17275 JUNB Transcription factor jun-B yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 115.85 108.25 3 0.0034301 3 76464 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.924 33.643 6897800 1608800 907840 0 929470 2485800 965880 7284 848 7182 32009;32010;32011;32012;32013 21111;21112;21113 21112 3 SRDLLVQQASQCLSK Unmodified 1731.8938 0.89376737 640 H3BQZ7;Q1KMD3 hCG_2044799;HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 119.89 114.57 3 0.00018013 3 78286 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.429 62.194 14942000 5724000 1752700 0 1833100 0 5632100 7285 640 7183 32014;32015;32016;32017 21114;21115;21116 21115 3 SREDAGDNDDTEGAIGVR Unmodified 1875.8195 0.81947604 1481 Q9H0S4;G5E955 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 72.303 64.958 3 1.6385E-05 6 52304 20150910_Q1_SA_NiHu_Masterprac_group13_C 88.385 68.106 8675400 619200 1685800 1235200 1076300 1487600 2571200 7286 1481 7184 32018;32019;32020;32021;32022;32023 21117;21118;21119;21120;21121;21122 21118 6 SREDAGDNDDTEGAIGVRNK Unmodified 2117.9574 0.9573665 1481 Q9H0S4;G5E955 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 0 0 2 By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 58.864 52.271 3;4 0.00010288 5 39045 20150910_Q1_SA_NiHu_Masterprac_group10_C 72.359 61.531 19264000 3193400 3996000 3808400 2391100 3303200 2572400 7287 1481 7185 32024;32025;32026;32027;32028;32029;32030;32031;32032;32033;32034;32035 21123;21124;21125;21126;21127 21127 5 SRFFCSSDSTDCVSNK Unmodified 1895.7778 0.77781092 1624 Q9UQ84-4;Q9UQ84 EXO1 Exonuclease 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 90.136 82.458 3 0.00057424 2 56546 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.583 67.044 6124800 297420 1584700 754630 951130 773740 1763200 7288 1624 7186 32036;32037;32038;32039;32040;32041 21128;21129 21128 2 SRFTPELQPK Unmodified 1201.6455 0.64552182 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 2 2 2 2 89.157 81.017 2;3 0.0088891 7 55667 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.659 41.691 48168000 8670100 3546100 5061800 4877100 9701200 16312000 7289 1109 7187 32042;32043;32044;32045;32046;32047;32048;32049;32050;32051;32052 21130;21131;21132;21133;21134;21135;21136 21131 7 SRGEQEGDEEEEGHIVDAEAEEGDADASDAK Unmodified 3273.3301 0.33013968 218 B9ZVN9;O95602 POLR1A DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 94.725 92.917 4 0.0053064 1 62493 20150910_Q1_SA_NiHu_Masterprac_group10_B 30.895 29.985 854780 0 854780 0 0 0 0 7290 218 7188 32053 21137 21137 1 SRGLFSANDWQCK Unmodified 1567.7202 0.72016011 765 O95218-2;O95218 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 122.11 119.43 3 0.0016255 2 76805 20150910_Q1_SA_NiHu_Masterprac_group10_B 80.371 48.595 1795000 0 466260 0 0 0 1328800 7291 765 7189 32054;32055 21138;21139 21139 2 SRGSGEQDWVNRPK Unmodified 1614.7863 0.78626584 1254 Q7Z5L9-2;Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 yes no 0 0 2 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 58.746 52.17 3 0.023516 3 43079 20150910_Q1_SA_NiHu_Masterprac_group13_C 52.966 44.138 5473000 294420 798920 756600 454180 1440000 1728900 7292 1254 7190 32056;32057;32058;32059;32060;32061 21140;21141;21142 21140 3 SRGSGGLGGACGGAGFGSR Unmodified 1666.7594 0.75939916 287;788 P02538;CON__P02538;P04259;CON__P04259;F5H6G5 KRT6A;KRT6B Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B no no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 78.265 69.288 3 0.00048257 4 48324 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.416 51.551 103870000 1394400 24655000 19740000 0 29988000 28095000 + 7293 287;788 7191 32062;32063;32064;32065;32066 21143;21144;21145;21146 21144 4 SRGSGGLGGACGGAGFGSRSLYGLGGSK Unmodified 2529.2143 0.21426667 287;788 P02538;CON__P02538;P04259;CON__P04259;F5H6G5 KRT6A;KRT6B Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B no no 0 0 2 By matching By MS/MS By matching By MS/MS By matching By matching 2 2 129.68 129.37 3;4 9.3131E-18 3 82639 20150910_Q1_SA_NiHu_Masterprac_group13_B 67.496 54.704 34057000 0 14458000 0 19599000 0 0 + 7294 287;788 7192 32067;32068;32069;32070 21147;21148;21149 21147 3 SRHENTSQVPLQESR Unmodified 1766.866 0.86597272 301 P20930;CON__P20930 FLG Filaggrin yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 47.473 46.519 3 0.0016463 1 33379 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.329 38.153 5897700 0 0 0 0 0 5897700 + 7295 301 7193 32071 21150 21150 1 SRIPAGERPTICGECGK Unmodified 1886.9091 0.90909986 1408 Q96MX3 ZNF48 Zinc finger protein 48 yes yes 0 0 2 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 78.419 70.908 3;4 0.0019961 7 49301 20150910_Q1_SA_NiHu_Masterprac_group10_B 67.846 42.724 32916000 4758100 4758300 5694700 1709700 10056000 5938900 7296 1408 7194 32072;32073;32074;32075;32076;32077;32078;32079;32080;32081;32082;32083 21151;21152;21153;21154;21155;21156;21157 21156 6 SRLAAVVSACK Unmodified 1160.6336 0.63357693 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 80.956 70.112 2 0.017063 1 54077 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.864 45.875 2344500 0 0 765700 254700 1324100 0 7297 1012 7195 32084;32085;32086 21158 21158 1 SRLSEQELEALELRER Unmodified 1957.0229 0.022867292 620 Q59HE6;H0YGC0;P52756 RBM5 RNA-binding protein 5 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 130.46 130.46 4 0.0023008 1 83457 20150910_Q1_SA_NiHu_Masterprac_group13_B 56.514 18.869 2230600 0 0 0 2230600 0 0 7298 620 7196 32087 21159 21159 1 SRNDKEPFFVK Acetyl (Protein N-term) 1407.7147 0.71466402 1351 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 1 0 2 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 2 2 107.97 100.05 2;3 0.0047376 4 66313 20150910_Q1_SA_NiHu_Masterprac_group10_C 76.332 48.155 38383000 5802200 7191300 0 1230200 6128500 18031000 7299 1351 7197 32088;32089;32090;32091;32092;32093;32094 21160;21161;21162;21163 21163 4 SRNLEEAAAAEQGGGCDQVDSSPVPR Unmodified 2699.2205 0.22053383 1638 Q9Y2U8 LEMD3 Inner nuclear membrane protein Man1 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 112.81 104.77 3 0.0014844 6 74292 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.835 44.251 28230000 0 3662300 3955700 3740100 9163200 7708300 7300 1638 7198 32095;32096;32097;32098;32099 21164;21165;21166;21167;21168;21169 21167 6 SRNPVASPTQPSGTEK Unmodified 1654.8275 0.82746195 716 O43435-2;O43435;O43435-3 TBX1 T-box transcription factor TBX1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 53.076 46.985 3 2.3591E-10 5 38909 20150910_Q1_SA_NiHu_Masterprac_group15_C 86.411 71.647 15195000 1361700 1579700 2147200 1875700 3945600 4285000 7301 716 7199 32100;32101;32102;32103;32104;32105 21170;21171;21172;21173;21174 21172 4 SRNTDEMVELR Unmodified 1348.6405 0.6405128 984 P61978-3;P61978-2;B4DFF1;P61978;Q5T6W5;Q5T6W2 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 84.517 78.337 2;3 0.0047603 8 54044 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.788 46.885 20782000 1710600 5355600 1756700 1441000 1598400 8919800 7302 984 7200 32106;32107;32108;32109;32110;32111;32112;32113 21175;21176;21177;21178;21179;21180;21181;21182 21179 8 SRPFTVAASFQSTSVKSPK Unmodified 2024.0691 0.069089203 107 F8VQE1;Q9UHB6-2;B4DN52;Q9UHB6;Q9UHB6-4;F8VS07;Q9UHB6-3 LIMA1 LIM domain and actin-binding protein 1 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By MS/MS 2 1 1 2 119.87 112.95 3;4 0.0027057 4 77044 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.002 31.83 8157400 2686300 872910 0 892490 0 3705700 7303 107 7201 32114;32115;32116;32117;32118;32119 21183;21184;21185;21186 21183 4 SRPQGLTEAEQR Unmodified 1370.6902 0.69024019 1021 Q00653-3;Q00653-4;Q00653 NFKB2 Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 50.114 45.551 3 0.0018431 4 37314 20150910_Q1_SA_NiHu_Masterprac_group13_C 77.185 42.108 11571000 1540900 1812700 1598200 1495100 0 5124500 7304 1021 7202 32120;32121;32122;32123;32124 21187;21188;21189;21190 21188 4 SRPQGLTEAEQRELEQEAK Unmodified 2198.0927 0.092737771 1021 Q00653-3;Q00653-4;Q00653 NFKB2 Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 115.05 98.979 3 0.0044199 1 66707 20150910_Q1_SA_NiHu_Masterprac_group10_C 54.768 32.138 4819900 1793500 0 1498700 0 1527700 0 7305 1021 7203 32125;32126;32127 21191 21191 1 SRQNPQSPPQDSSVTSK Unmodified 1841.8868 0.88676774 370 E7ERH6;Q9UBN7;C9JEF4;C9J172;E9PEH1;E7EP63;E7ER52;A6NDI8;E7EPS2 HDAC6 Histone deacetylase 6 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 44.71 39.387 3 0.00067299 4 31698 20150910_Q1_SA_NiHu_Masterprac_group13_C 82.349 62.677 38259000 5216800 4601100 8355200 4218200 6575500 9292300 7306 370 7204 32128;32129;32130;32131;32132;32133 21192;21193;21194;21195 21194 4 SRQSSVSFRSGGSR Acetyl (Protein N-term) 1538.755 0.75496571 299 P13647;CON__P13647;F8VV57;E7EU87;F8VU69;CON__Q922U2;F8W0C6 KRT5 Keratin, type II cytoskeletal 5 yes no 1 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 54.735 49.842 3 0.0024322 1 35190 20150910_Q1_SA_NiHu_Masterprac_group13_B 64.244 43.212 12635000 1305600 1271300 0 8792700 630210 635640 + 7307 299 7205 32134;32135;32136;32137;32138 21196 21196 1 SRQSTLYSFFPKSPALSDANK Acetyl (Protein N-term) 2385.1965 0.19647456 959 P52701;B4DF41;F5H769;P52701-2;E7ER38;F8W7G9;F8WAX8 MSH6 DNA mismatch repair protein Msh6 yes no 1 0 2 By matching By matching By matching By MS/MS By matching By matching 1 133.82 133.82 3 0.016355 1 86965 20150910_Q1_SA_NiHu_Masterprac_group13_B 46.786 25.939 0 0 0 0 0 0 0 7308 959 7206 32139 21197 21197 1 SRQTPTHPLTPR Unmodified 1389.7477 0.74769548 1080 Q13415 ORC1 Origin recognition complex subunit 1 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 42.11 38.412 3 0.0057944 3 27129 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.662 42.29 22326000 0 5615800 0 2509800 3412300 10788000 7309 1080 7207 32140;32141;32142;32143 21198;21199;21200 21200 3 SRQTPTHPLTPRAR Unmodified 1616.8859 0.8859203 1080 Q13415 ORC1 Origin recognition complex subunit 1 yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 35.717 35.717 4 0.037292 1 24258 20150910_Q1_SA_NiHu_Masterprac_group13_B 39.006 28.656 208970 0 0 0 208970 0 0 7310 1080 7208 32144 21201 21201 1 SRSDIDVNAAAGAK Unmodified 1373.6899 0.68990583 73 O75122-2;B3KR06;E7ENG2;E9PBA6;F5H3X0;E3W994;O75122;F5H604;E7ERI8;E7EW49 CLASP2 CLIP-associating protein 2 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 64.298 56.829 3 0.0032077 1 45720 20150910_Q1_SA_NiHu_Masterprac_group15_C 70.272 41.201 814640 0 0 0 305800 508840 0 7311 73 7209 32145;32146 21202 21202 0 SRSDIDVNAAASAK Unmodified 1403.7005 0.70047052 211 B7ZLX3;H0Y5T1;F5H2E2;F5GWM7;Q7Z460-2;E7EUA5;F5GWS0;Q7Z460-3;F8WA11;Q7Z460 CLASP1 CLIP-associating protein 1 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 2 1 66.682 58.453 3 0.001913 2 46726 20150910_Q1_SA_NiHu_Masterprac_group15_C 66.674 21.393 4328500 850330 550500 713740 240480 957090 1016400 7312 211 7210 32147;32148;32149;32150;32151;32152;32153 21203;21204 21204 2 SRSLAAQEPASVLEEAR Unmodified 1812.933 0.93298965 1080 Q13415 ORC1 Origin recognition complex subunit 1 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 130.88 112.89 3 0.0077233 1 81582 20150910_Q1_SA_NiHu_Masterprac_group13_C 59.733 12.843 4031100 0 0 4031100 0 0 0 7313 1080 7211 32154 21205 21205 0 SRSNVQPTAAPGQK Acetyl (Protein N-term) 1481.7587 0.7586541 111 B4DNM4;C7G535;Q96GD4 AURKB Aurora kinase B yes yes 1 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 55.211 49.154 2 0.0013892 1 35000 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.911 42.322 8792000 0 1946100 2463800 785650 979920 2616400 7314 111 7212 32155;32156;32157;32158;32159 21206 21206 1 SRSQGCSEQVLTVLK Unmodified 1690.8672 0.86721827 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 116.83 109.73 3 0.0038726 1 75077 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.851 21.336 14292000 0 0 0 1456000 5175100 7661400 7315 1012 7213 32160;32161;32162 21207 21207 1 SRSVLQPSQQK Acetyl (Protein N-term) 1298.6943 0.69426293 1630 Q9Y2A7;Q9Y2A7-2 NCKAP1 Nck-associated protein 1 yes no 1 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 67.771 60.627 2 0.010361 3 42749 20150910_Q1_SA_NiHu_Masterprac_group10_B 67.385 19.679 11465000 1591200 1935300 3314200 1353400 1915600 1355200 7316 1630 7214 32163;32164;32165;32166;32167;32168 21208;21209;21210 21210 3 SRSVLREWYAHNPYPSPR Unmodified 2214.1083 0.10826868 1525 Q9NPC8 SIX2 Homeobox protein SIX2 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 124.81 120.04 4 0.020863 1 81454 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.687 18.368 5459800 0 0 0 0 0 5459800 7317 1525 7215 32169 21211 21211 1 SRTNMSSVKNPESTVPIAPELPPSTSTEQPVTPEPTSR Unmodified 4048.0059 0.0059031841 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 132.64 116.95 4 4.8454E-12 1 78357 20150910_Q1_SA_NiHu_Masterprac_group10_C 35.835 24.742 3459500 3459500 0 0 0 0 0 7318 1109 7216 32170 21212 21212 1 SRTVLCGTCGQPADK Unmodified 1648.7661 0.76612402 783 P02545;P02545-3;Q6UYC3;D6RAQ3;E7EUI9 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 61.467 53.865 3 0.0027746 1 38355 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.454 44.777 9658300 1307800 0 2047200 0 0 6303300 7319 783 7217 32171;32172;32173 21213 21213 1 SRVRPCVVYGGADIGQQIR Unmodified 2130.1116 0.11163949 693 O00571;O00571-2;B4DLU5;B4DXX7;O15523 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 122.39 112.27 4 0.00095274 1 76768 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.307 34.233 2694600 523920 0 0 0 0 2170700 7320 693 7218 32174;32175 21214 21214 1 SRWNQDTMEQK Unmodified 1421.6358 0.63576177 1141 Q15637-6;Q15637-4;Q15637-3;Q15637-2;Q15637;Q14820;F8WEV5 SF1 Splicing factor 1 no no 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 2 1 2 60.335 54.239 2;3 4.1938E-20 4 38564 20150910_Q1_SA_NiHu_Masterprac_group15_B 121.68 83.711 4891000 0 0 1285300 1283500 0 2322200 7321 1141 7219 32176;32177;32178;32179;32180 21215;21216;21217;21218 21217 4 SRYEQVDLVGK Unmodified 1292.6725 0.67246486 515 F5H3H6;Q9BQ39 DDX50 ATP-dependent RNA helicase DDX50 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 91.125 83.399 2 0.029864 1 63608 20150910_Q1_SA_NiHu_Masterprac_group13_C 63.091 34.86 6770000 686690 980680 806860 570070 902990 2822800 7322 515 7220 32181;32182;32183;32184;32185;32186 21219 21219 1 SSAEVIAQAR Unmodified 1030.5407 0.5407224 118 B4DR31;Q16555 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 59.988 57.905 2 0.016563 2 41044 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.56 21.402 963110 0 391830 0 0 0 571280 7323 118 7221 32187;32188 21220;21221 21221 2 SSAEVIAQARK Unmodified 1158.6357 0.63568542 118 B4DR31;Q16555 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 52.294 46.302 2 3.5176E-41 3 33224 20150910_Q1_SA_NiHu_Masterprac_group10_B 133.89 64.221 9274500 885770 2127800 2284200 608780 761470 2606500 7324 118 7222 32189;32190;32191;32192;32193;32194 21222;21223;21224 21224 3 SSAPSRVPPLFVPQGTSERK Unmodified 2139.1437 0.14365113 1480 Q9H0J9;G5E9U9;H7C4L8 PARP12 Poly [ADP-ribose] polymerase 12 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 122.51 119.82 3 0.023592 1 81350 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.981 31.114 2331600 0 436730 0 0 0 1894900 7325 1480 7223 32195;32196 21225 21225 1 SSAQLQTNYPSSDNSLYTNAK Unmodified 2288.0557 0.055683563 981 P61244-2;P61244;G3V5L1;G3V302 MAX Protein max yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 129.35 113.66 2 0.016509 1 75016 20150910_Q1_SA_NiHu_Masterprac_group10_C 37.683 23.683 2030600 2030600 0 0 0 0 0 7326 981 7224 32197 21226 21226 1 SSAQNKQVDENSLISTKEEPPVLER Unmodified 2797.4094 0.40938046 1404 Q96L73-2;Q96L73-3;Q96L73 NSD1 Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 129.64 129.03 4 1.602E-08 1 82564 20150910_Q1_SA_NiHu_Masterprac_group10_B 76.156 55.775 3516400 0 3516400 0 0 0 0 7327 1404 7225 32198 21227 21227 0 SSASTAVSAAPTEK Unmodified 1305.6412 0.64122431 561 P04150-7;P04150-5;F8W959;P04150-9;P04150-2;P04150-6;P04150-8;P04150-10;P04150;P04150-3 NR3C1 Glucocorticoid receptor yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 57.13 50.893 2 0.0014485 5 36323 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.261 38.532 8550800 0 1368300 1372800 1265200 2032100 2512400 7328 561 7226 32199;32200;32201;32202;32203 21228;21229;21230;21231;21232 21230 5 SSDAFTTQHALRQAQMSK Unmodified 2005.964 0.9639722 768 O95239;O95239-2 KIF4A Chromosome-associated kinesin KIF4A yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 95.987 88.058 3 0.001794 2 59549 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.782 31.301 8896700 436960 2685500 708670 584250 1247500 3233800 7329 768 7227 32204;32205;32206;32207;32208;32209 21233;21234 21234 2 SSDFEDSAHLMQPVHNKPVK Unmodified 2265.0848 0.084815622 739 O75319 DUSP11 RNA/RNP complex-1-interacting phosphatase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 100.58 97.623 3 0.00013717 2 66501 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.977 45.158 1909700 0 0 0 0 0 1909700 7330 739 7228 32210 21235;21236 21235 2 SSDLIQHQATHTGEKPYKCPECGK Unmodified 2770.2803 0.28029732 1586 Q9UEG4 ZNF629 Zinc finger protein 629 yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 68.455 62.238 4 0.0033725 1 44790 20150910_Q1_SA_NiHu_Masterprac_group10_C 47.472 41.03 7607600 1733500 0 0 1507600 1458800 2907700 7331 1586 7229 32211;32212;32213;32214 21237 21237 1 SSDQPLTVPVSPK Unmodified 1353.714 0.71399532 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1 116.89 107.66 2 2.0063E-15 8 73372 20150910_Q1_SA_NiHu_Masterprac_group15_B 109.44 78.584 152710000 22389000 26366000 19889000 12155000 22233000 49675000 7332 1611 7230 32215;32216;32217;32218;32219;32220;32221;32222 21238;21239;21240;21241;21242;21243;21244;21245 21241 7 SSDVSWSDTRR Unmodified 1294.5902 0.59019179 696 O14776-2;O14776;G3V220 TCERG1 Transcription elongation regulator 1 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 2 1 1 1 1 63.374 56.992 3 0.02434 2 45706 20150910_Q1_SA_NiHu_Masterprac_group15_C 46.406 18.493 5964300 635650 1304200 535810 369800 1485700 1633200 7333 696 7231 32223;32224;32225;32226;32227;32228;32229 21246;21247 21246 2 SSEDQGIKGRIEK Unmodified 1445.7474 0.74742071 1447 Q9BTC0;Q9BTC0-1;Q9BTC0-2;Q9BTC0-3 DIDO1 Death-inducer obliterator 1 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 51.589 45.632 3 0.0051362 4 32780 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.69 80.69 27251000 3124700 4142500 5479400 4639200 4993100 4872500 7334 1447 7232 32230;32231;32232;32233;32234;32235 21248;21249;21250;21251 21249 4 SSEFASIPANSSRPLSNISK Unmodified 2091.0596 0.059646729 1564 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 131.21 125.89 3 1.008E-65 6 86138 20150910_Q1_SA_NiHu_Masterprac_group15_B 121.51 101.12 175580000 25996000 104980000 0 17675000 0 26933000 7335 1564 7233 32236;32237;32238;32239 21252;21253;21254;21255;21256;21257 21255 6 SSEGSAHNVAYPGIPK Unmodified 1612.7845 0.7845345 464 Q03164-2;Q03164;E9PQG7 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 95.929 89.773 3 0.0019796 2 61273 20150910_Q1_SA_NiHu_Masterprac_group10_C 57.288 16.347 8454200 2369700 1314000 0 1721000 1435700 1613900 7336 464 7234 32240;32241;32242;32243;32244 21258;21259 21259 2 SSEPVVIMK Unmodified 988.52632 0.52631789 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 99.677 91.299 2 0.0012079 6 68308 20150910_Q1_SA_NiHu_Masterprac_group13_C 107.57 107.57 185890000 31829000 19522000 33899000 14280000 30160000 56204000 7337 919;920 7235 32245;32246;32247;32248;32249;32250;32251 21260;21261;21262;21263;21264;21265 21261 6 SSEQILATLKGHTK Unmodified 1511.8308 0.83075641 1613 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 111.27 102.39 3 1.5281E-12 1 69957 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.38 49.768 21519000 4286300 5406700 2640300 1135200 498750 7552100 7338 1613 7236 32252;32253;32254;32255;32256;32257 21266 21266 1 SSEQILATLKGHTKK Unmodified 1639.9257 0.92571943 1613 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 99.484 89.933 3 0.0026342 2 67815 20150910_Q1_SA_NiHu_Masterprac_group13_C 77.204 21.913 8537600 0 2295400 1594600 0 2113300 2534300 7339 1613 7237 32258;32259;32260;32261 21267;21268 21267 2 SSFFSDRGSGSR Unmodified 1288.5796 0.5796271 693 O00571;O00571-2;B4DLU5;B4E3C4;B4DLA0 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 74.813 64.086 3 0.014732 1 51647 20150910_Q1_SA_NiHu_Masterprac_group13_C 55.314 28.561 40466000 6462400 7315200 13045000 0 13644000 0 7340 693 7238 32262;32263;32264;32265 21269 21269 1 SSFLASLNPK Unmodified 1062.571 0.5709599 1122 Q14CA3;Q14669;Q14CF1 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 132.95 132.95 2 0.01406 1 85942 20150910_Q1_SA_NiHu_Masterprac_group13_B 68.786 33.634 5386900 0 0 0 5386900 0 0 7341 1122 7239 32266 21270 21270 1 SSFNLGTIETK Unmodified 1195.6085 0.60846762 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 131.23 121.73 2 2.2639E-86 5 78330 20150910_Q1_SA_NiHu_Masterprac_group10_C 150.06 115.36 105350000 43854000 15442000 14157000 7092700 7987700 16819000 7342 531 7240 32267;32268;32269;32270;32271;32272 21271;21272;21273;21274;21275 21275 5 SSFSESALEK Acetyl (Protein N-term) 1125.519 0.51898391 1530 Q9NQG5;E9PQF3;E9PIQ9 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes no 1 0 0 By matching By MS/MS By matching By matching By matching By matching 1 115.04 114.03 2 0.010726 1 74075 20150910_Q1_SA_NiHu_Masterprac_group10_B 60.691 16.342 0 0 0 0 0 0 0 7343 1530 7241 32273 21276 21276 1 SSFSHYSGLKHEDK Unmodified 1620.7532 0.75323437 1316;1317 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein no no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 2 2 2 2 54.29 47.939 3;4 0.00072095 4 39380 20150910_Q1_SA_NiHu_Masterprac_group13_C 86.699 55.025 8859000 0 960610 1837600 502750 1248800 4309300 7344 1316;1317 7242 32274;32275;32276;32277;32278;32279;32280;32281;32282 21277;21278;21279;21280 21277 4 SSFSSDPDEKAQDSK Unmodified 1626.7009 0.70092403 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 45.877 40.488 2;3 2.7242E-08 5 32640 20150910_Q1_SA_NiHu_Masterprac_group13_C 99.069 86.277 57715000 5002700 6393100 13615000 3318900 10175000 19210000 7345 919 7243 32283;32284;32285;32286;32287;32288;32289;32290;32291;32292;32293;32294 21281;21282;21283;21284;21285 21282 5 SSFSSDPDEKAQDSKAYSK Unmodified 2075.9284 0.92835778 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 1 1 1 1 1 61.385 54.481 3 0.00095118 3 39486 20150910_Q1_SA_NiHu_Masterprac_group10_C 69.979 69.979 19982000 7650600 1064600 5593900 3414200 1198700 1060000 7346 919 7244 32295;32296;32297;32298;32299;32300;32301 21286;21287;21288 21288 3 SSFSSDPDESEGIPLK Unmodified 1693.7683 0.76827531 920 P46013-2;E7EN66 MKI67 Antigen KI-67 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 129.46 116.6 2 4.6067E-140 5 77541 20150910_Q1_SA_NiHu_Masterprac_group10_C 150.37 125.14 55742000 22756000 0 23745000 2786900 6454200 0 7347 920 7245 32302;32303;32304;32305 21289;21290;21291;21292;21293 21293 5 SSFSSDPDESEGIPLKR Unmodified 1849.8694 0.86938634 920 P46013-2;E7EN66 MKI67 Antigen KI-67 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 113.38 105.83 3 0.0021223 2 71246 20150910_Q1_SA_NiHu_Masterprac_group10_C 48.899 32.965 7785000 2052100 1319200 1392100 859840 0 2161800 7348 920 7246 32306;32307;32308;32309;32310 21294;21295 21295 1 SSFYPDGGDQETAK Unmodified 1500.6369 0.63686721 1563;452 Q9NYF8-2;Q9NYF8;Q9NYF8-4;E9PK09;E9PQN2;E9PKI6;E9PJA7;H0YF00;Q9NYF8-3;E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 2 1 1 1 1 1 86.759 78.982 2 6.0855E-05 4 54616 20150910_Q1_SA_NiHu_Masterprac_group10_C 91.712 85.63 88165000 23495000 6562800 11435000 13128000 15992000 17553000 7349 1563;452 7247 32311;32312;32313;32314;32315;32316;32317 21296;21297;21298;21299 21298 4 SSGAASSAPGGGDGAEYK Unmodified 1567.675 0.67504363 1421 Q96T37-2;Q96T37-3;Q96T37 RBM15 Putative RNA-binding protein 15 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 54.191 47.324 2 0.0040398 1 35168 20150910_Q1_SA_NiHu_Masterprac_group10_C 48.288 36.497 671600 671600 0 0 0 0 0 7350 1421 7248 32318 21300 21300 1 SSGASVTTQPTEFK Unmodified 1438.694 0.69398816 1465 Q9BY77;Q9BY77-2 POLDIP3 Polymerase delta-interacting protein 3 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 89.836 82.141 2 6.4321E-104 5 56332 20150910_Q1_SA_NiHu_Masterprac_group15_B 145.61 113.94 17583000 1646200 2773000 2475900 1064200 2938800 6685200 7351 1465 7249 32319;32320;32321;32322;32323;32324 21301;21302;21303;21304;21305 21303 5 SSGASVTTQPTEFKIKL Unmodified 1792.9571 0.95707914 1465 Q9BY77;Q9BY77-2 POLDIP3 Polymerase delta-interacting protein 3 yes no 0 0 2 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 133.11 132.81 3 2.7678E-109 2 85987 20150910_Q1_SA_NiHu_Masterprac_group10_B 138.28 111.79 77997000 0 45590000 0 32407000 0 0 7352 1465 7250 32325;32326 21306;21307 21307 2 SSGEIVYCGQVFEKSPLRVK Unmodified 2282.1729 0.17290235 104 B4DM74;Q02543 RPL18A 60S ribosomal protein L18a yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 132.92 117.23 3 0.0049394 1 78672 20150910_Q1_SA_NiHu_Masterprac_group10_C 51.971 17.769 7299100 7299100 0 0 0 0 0 7353 104 7251 32327 21308 21308 1 SSGHSSSELSPDAVEK Unmodified 1615.7326 0.73255851 1623 Q9UQ35;F5GWZ7;Q9UQ35-2;I3L2L6 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 2 1 2 2 69.901 61.507 2;3 0.0019442 2 43067 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.413 54.9 14335000 1219800 327640 2697600 701930 1558600 7829800 7354 1623 7252 32328;32329;32330;32331;32332;32333;32334;32335;32336 21309;21310 21310 2 SSGISSQNSSTSDGDRSVSSQSSSSVSSQVTTAGSGK Unmodified 3522.579 0.57897758 1560 Q9NXV6 CDKN2AIP CDKN2A-interacting protein yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 87.713 81.429 3 0.0005647 1 60949 20150910_Q1_SA_NiHu_Masterprac_group15_C 25.393 21.257 14978000 0 5706100 0 5482300 3790000 0 7355 1560 7253 32337;32338;32339 21311 21311 1 SSGKTPETLVPTAPK Unmodified 1511.8195 0.81952302 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 2 2 2 2 2 97.854 90.002 2;3 0.00011641 5 66334 20150910_Q1_SA_NiHu_Masterprac_group15_C 73.834 53.751 31028000 4250400 3231400 2826100 2758800 7604400 10357000 7356 1109 7254 32340;32341;32342;32343;32344;32345;32346;32347;32348;32349;32350 21312;21313;21314;21315;21316 21314 4 SSGKTPETLVPTAPKLEPSTSTDQPVTPEPTSQATR Unmodified 3734.885 0.88504299 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 131.26 131.26 4 4.442E-08 1 84243 20150910_Q1_SA_NiHu_Masterprac_group13_B 35.626 26.592 4350700 0 0 0 4350700 0 0 7357 1109 7255 32351 21317 21317 1 SSGPTSLFAVTVAPPGARQGQQQAGGDGK Unmodified 2768.3842 0.38416877 1023 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 133.57 133.57 3 1.89E-49 1 86664 20150910_Q1_SA_NiHu_Masterprac_group13_B 96.052 46.46 34359000 0 0 0 34359000 0 0 7358 1023 7256 32352 21318 21318 1 SSGPTSLFAVTVAPPGARQGQQQAGGKK Unmodified 2724.4307 0.43072503 1022 Q00839;B3KX72 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 0 0 2 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 132.25 131.95 4 2.8306E-49 2 85311 20150910_Q1_SA_NiHu_Masterprac_group13_B 96.341 72.65 29140000 0 12832000 0 16308000 0 0 7359 1022 7257 32353;32354 21319;21320 21319 2 SSGPYGGGGQYFAKPR Unmodified 1627.7743 0.77430417 537 H0YH80;P09651-3;F8VXY0;F8VRQ1;P09651-2;F8W6I7;P09651;F8VSB5;F8W1S7 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 1 1 1 2 1 97.762 88.463 3 0.0011159 3 60349 20150910_Q1_SA_NiHu_Masterprac_group10_C 74.649 53.589 18724000 3325800 2805700 1188600 1131000 5795300 4477200 7360 537 7258 32355;32356;32357;32358;32359;32360;32361;32362 21321;21322;21323 21323 3 SSGRSGSMDPSGAHPSVR Oxidation (M) 1786.8017 0.8016579 1045 Q07666;Q07666-3;Q07666-2;E7ET98 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 1 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 33.837 30.367 4 0.011731 4 25923 20150910_Q1_SA_NiHu_Masterprac_group15_C 67.645 53.369 9840600 1496000 1215000 0 1471400 2136700 3521600 7361 1045 7259 32363;32364;32365;32366;32367 21324;21325;21326;21327 21325 127 4 SSGRSGSMDPSGAHPSVR Unmodified 1770.8067 0.80674328 1045 Q07666;Q07666-3;Q07666-2;E7ET98 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 52.375 46.317 3;4 1.2759E-13 5 38535 20150910_Q1_SA_NiHu_Masterprac_group15_C 95.554 65.226 174210000 16994000 23137000 20502000 15201000 48023000 50354000 7362 1045 7259 32368;32369;32370;32371;32372;32373;32374;32375;32376;32377;32378;32379 21328;21329;21330;21331;21332 21331 5 SSGSPYGGGYGSGGGSGGYGSR Unmodified 1909.7827 0.7826966 371;955 E7EWI9;E7ERJ4;P51991-2;H7C1J8;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 83.637 74.53 2 0.0038399 3 52426 20150910_Q1_SA_NiHu_Masterprac_group10_C 46.595 43.498 17304000 2832800 6554600 0 0 7916600 0 7363 371;955 7260 32380;32381;32382 21333;21334;21335 21335 3 SSGSPYGGGYGSGGGSGGYGSRRF Unmodified 2212.9522 0.95222154 371;955 E7EWI9;E7ERJ4;P51991-2;H7C1J8;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 100.85 94.279 3 0.00026248 5 63074 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.123 49.462 119370000 28795000 13112000 18097000 35583000 0 23779000 7364 371;955 7261 32383;32384;32385;32386;32387 21336;21337;21338;21339;21340 21339 5 SSGTTAKPLPVVK Unmodified 1283.7449 0.74490152 1205 Q5VUA4 ZNF318 Zinc finger protein 318 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 74.453 66.157 3 0.039406 1 46126 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.684 8.8245 4889200 0 0 916740 616830 1709800 1645800 7365 1205 7262 32388;32389;32390;32391 21341 21341 1 SSGYHYGVSACEGCK Unmodified 1660.661 0.66099025 122 D6RBI3;B4DSI3;P10826-2;P10826;P10276-2;P10276;A8MUP8;F8W8A4 RARB;RARA Retinoic acid receptor beta;Retinoic acid receptor alpha yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 69.344 62.245 3 0.00064685 4 43639 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.69 67.96 7174300 0 1271100 1730900 438670 531480 3202200 7366 122 7263 32392;32393;32394;32395;32396 21342;21343;21344;21345 21344 4 SSGYHYGVSSCEGCK Unmodified 1676.6559 0.65590487 832 P13631-2;P13631 RARG Retinoic acid receptor gamma yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 61.137 55.872 3 0.0041207 1 39406 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.168 38.268 2890700 0 0 0 200460 570080 2120100 7367 832 7264 32397;32398;32399 21346 21346 1 SSILAGGQPR Unmodified 984.53524 0.53524309 1467 Q9BYB4;Q9BYB4-2;C9JPQ6 GNB1L Guanine nucleotide-binding protein subunit beta-like protein 1 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 1 1 1 1 71.534 65.493 2 0.009973 4 46138 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.533 15.38 13836000 934020 2850300 0 936320 3420000 5695400 7368 1467 7265 32400;32401;32402;32403;32404;32405 21347;21348;21349;21350 21347 4 SSILVQHQRVHTGEKPYK Unmodified 2106.1334 0.13342079 844 P17028 ZNF24 Zinc finger protein 24 yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 66.639 59.069 4 0.0032562 1 47105 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.265 22.139 2648400 0 0 0 1214800 1433700 0 7369 844 7266 32406;32407 21351 21351 1 SSIRQVSDVQK Unmodified 1245.6677 0.66771383 1076 Q13263-2;Q13263 TRIM28 Transcription intermediary factor 1-beta yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 47.437 46.482 3 0.033608 1 33363 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.962 40.189 0 0 0 0 0 0 0 7370 1076 7267 32408 21352 21352 1 SSISETLSGTDTFSSSNNHEK Unmodified 2226.9877 0.98766358 1219 Q69YH5;E9PEI0 CDCA2 Cell division cycle-associated protein 2 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 119.07 111.01 3 1.2969E-05 2 72629 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.907 58.59 11817000 0 3358100 3847000 0 0 4611600 7371 1219 7268 32409;32410;32411 21353;21354 21354 2 SSLANYLHK Unmodified 1031.54 0.53999412 769 O95243-2 MBD4 Methyl-CpG-binding domain protein 4 no no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 3 1 1 1 1 100.16 90.698 2 0.0071345 5 66645 20150910_Q1_SA_NiHu_Masterprac_group15_C 89.08 52.395 30050000 11890000 0 2617100 3620500 5398400 6524400 7372 769 7269 32412;32413;32414;32415;32416;32417;32418 21355;21356;21357;21358;21359 21357 5 SSLENEPSLGRTQK Unmodified 1544.7794 0.77944912 1176 Q56NI9;E5RFE4 ESCO2 N-acetyltransferase ESCO2 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 1 2 1 1 1 75.629 66.988 2;3 0.00031653 3 46676 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.136 60.496 14248000 2008500 981610 4824500 2783000 2266700 1383600 7373 1176 7270 32419;32420;32421;32422;32423;32424;32425;32426 21360;21361;21362 21361 3 SSLGQSASETEEDTVSVSK Unmodified 1939.8858 0.88582427 1083 Q13435;E9PPJ0;E9PJ04;H0YCG1 SF3B2 Splicing factor 3B subunit 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 102.19 94.905 2 0.0057073 1 64849 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.436 23.76 2974600 0 449760 1074000 0 0 1450900 7374 1083 7271 32427;32428;32429 21363 21363 1 SSLHTLTKVPK Unmodified 1209.7081 0.70812208 1080 Q13415 ORC1 Origin recognition complex subunit 1 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 67.519 60.48 3 0.0051518 3 47950 20150910_Q1_SA_NiHu_Masterprac_group15_C 73.951 44.993 29647000 0 5696800 7727400 1809900 4586800 9826100 7375 1080 7272 32430;32431;32432;32433;32434 21364;21365;21366 21366 3 SSLIHQGIR Unmodified 1009.5669 0.56687757 157 B4E1H5;Q12834 CDC20 Cell division cycle protein 20 homolog yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 67.774 60.614 2 0.0082093 4 42951 20150910_Q1_SA_NiHu_Masterprac_group10_B 98.048 34.514 25288000 1438900 4716300 7334200 2338900 2560600 6899600 7376 157 7273 32435;32436;32437;32438;32439;32440 21367;21368;21369;21370 21369 4 SSLLASRYDSPINSASHIPSSK Unmodified 2316.171 0.17098809 13 O14639-4;O14639-3;O14639-5;Q5JVV3;H0Y3K7;F8WAB1;Q5T6N2;F8WAB0;O14639-2;F8W8M4;A6NKJ2;O14639;Q5T6N4;A6NCD9 ABLIM1 Actin-binding LIM protein 1 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 130.41 122.15 3 2.6362E-112 5 85408 20150910_Q1_SA_NiHu_Masterprac_group15_B 135.98 135.98 40987000 0 14425000 7302800 3706600 2165200 13387000 7377 13 7274 32441;32442;32443;32444;32445 21371;21372;21373;21374;21375 21374 5 SSLLEKGLDGAK Unmodified 1216.6663 0.66631685 1013;1014 P81605;P81605-2 DCD Dermcidin;Survival-promoting peptide;DCD-1 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 103.79 95.609 2;3 9.1488E-118 10 63927 20150910_Q1_SA_NiHu_Masterprac_group10_B 159.5 78.79 52649000 1643200 17295000 14562000 5114400 6735700 7299500 7378 1013;1014 7275 32446;32447;32448;32449;32450;32451;32452;32453;32454;32455;32456 21376;21377;21378;21379;21380;21381;21382;21383;21384;21385 21384 9 SSLLEKGLDGAKK Unmodified 1344.7613 0.76127986 1013;1014 P81605;P81605-2 DCD Dermcidin;Survival-promoting peptide;DCD-1 no no 0 0 2 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 88.706 81.234 3 0.0039657 4 55579 20150910_Q1_SA_NiHu_Masterprac_group13_B 78.324 41.18 7442500 0 1939200 498210 1333400 2229200 1442500 7379 1013;1014 7276 32457;32458;32459;32460;32461 21386;21387;21388;21389 21386 4 SSLNGKGESSLTALER Unmodified 1647.8428 0.84277766 1219 Q69YH5;E9PEI0 CDCA2 Cell division cycle-associated protein 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 106.69 97.995 3 0.0027199 1 66883 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.121 56.121 4425700 556600 1285500 0 0 203710 2379900 7380 1219 7277 32462;32463;32464;32465 21390 21390 1 SSLSNNECGSLDK Unmodified 1409.6093 0.60927225 1201 Q5UIP0-2;Q5UIP0 RIF1 Telomere-associated protein RIF1 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 62.161 54.3 2 5.3985E-24 3 37919 20150910_Q1_SA_NiHu_Masterprac_group10_C 115.24 75.66 39906000 2061300 12155000 12023000 5383200 8284000 0 7381 1201 7278 32466;32467;32468;32469;32470 21391;21392;21393 21393 3 SSLSRHHPEESPLGAK Unmodified 1730.87 0.86999547 63 B1AL16;Q8IX21;B1AL17 FAM178A Protein FAM178A yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 53.88 47.062 4 0.0026041 1 38954 20150910_Q1_SA_NiHu_Masterprac_group15_C 56.793 37.026 6574200 0 0 1109500 685250 2335200 2444200 7382 63 7279 32471;32472;32473;32474 21394 21394 1 SSLTVHQRTHTGEKPYECEK Unmodified 2386.1336 0.13355673 835 P13682;B4DUB8 ZNF35 Zinc finger protein 35 yes no 0 0 2 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 53.442 44.936 4 0.0030916 2 37222 20150910_Q1_SA_NiHu_Masterprac_group13_C 47.223 34.431 4873500 0 0 2245500 1486000 1141900 0 7383 835 7280 32475;32476;32477 21395;21396 21396 2 SSLVTPSISK Unmodified 1017.5706 0.57062555 1205 Q5VUA4 ZNF318 Zinc finger protein 318 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 100.65 91.145 2 0.01406 1 62248 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.786 68.786 2228100 0 0 0 0 706770 1521300 7384 1205 7281 32478;32479 21397 21397 1 SSLYEQMGDHK Unmodified 1293.566 0.56595087 1656 Q9Y5Q9-2;Q9Y5Q9 GTF3C3 General transcription factor 3C polypeptide 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 2 76.708 71.318 2;3 0.00039463 2 49618 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.171 66.638 4118400 0 652690 0 0 135820 3329900 7385 1656 7282 32480;32481;32482;32483 21398;21399 21399 2 SSPELEDTATSSK Unmodified 1350.6151 0.61506914 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 62.362 54.517 2 2.1897E-46 5 39516 20150910_Q1_SA_NiHu_Masterprac_group10_B 125.53 125.53 258990000 41288000 63796000 74930000 31663000 47312000 0 7386 919;920 7283 32484;32485;32486;32487;32488;32489 21400;21401;21402;21403;21404 21402 5 SSPHEVKFQMQRK Unmodified 1600.8144 0.81439484 149 B4DZR9;Q9UQR0;B4DRC2;H0Y6S1;Q9UQR0-2 SCML2 Sex comb on midleg-like protein 2 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 58.975 51.982 4 0.016341 1 36774 20150910_Q1_SA_NiHu_Masterprac_group13_B 49.632 16.44 619930 0 0 200990 418930 0 0 7387 149 7284 32490;32491 21405 21405 1 SSPVPVSDTQK Unmodified 1143.5772 0.57716749 27 F5H101;Q76FK4-2;Q76FK4-4;A6NJK7;Q76FK4;F8WE42;Q76FK4-3;F5GWN9 NOL8 Nucleolar protein 8 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 62.196 54.099 2 0.013912 1 38493 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.255 29.643 8145500 0 1341800 1404800 0 2469400 2929500 7388 27 7285 32492;32493;32494;32495 21406 21406 1 SSPVPVSDTQKLK Unmodified 1384.7562 0.75619449 27 F5H101;Q76FK4-2;Q76FK4-4;A6NJK7;Q76FK4;F8WE42;Q76FK4-3;F5GWN9 NOL8 Nucleolar protein 8 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 2 2 82.181 74.786 2;3 0.0021661 7 51825 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.888 26.124 32643000 2901800 7673100 1732500 1039800 10495000 8801000 7389 27 7286 32496;32497;32498;32499;32500;32501;32502;32503;32504;32505 21407;21408;21409;21410;21411;21412;21413 21413 7 SSQEEVRSYSDPPLK Unmodified 1720.8268 0.82679325 958 P52597;B4DKS8 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 90.192 82.732 3 0.0027522 5 56408 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.104 34.636 114010000 0 26635000 16234000 11589000 16018000 43535000 7390 958 7287 32506;32507;32508;32509;32510 21414;21415;21416;21417;21418 21418 5 SSQESIVCELR Unmodified 1306.6187 0.61871473 1560 Q9NXV6 CDKN2AIP CDKN2A-interacting protein yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 2 121.61 112.81 2 0.0004175 5 78752 20150910_Q1_SA_NiHu_Masterprac_group15_C 96.82 42.754 38550000 4512000 4228000 4952400 1859800 3976000 19021000 7391 1560 7288 32511;32512;32513;32514;32515;32516;32517 21419;21420;21421;21422;21423 21421 5 SSQETPAHSSGQPPRDAK Unmodified 1878.882 0.88201671 1567 Q9NZC9;H7C051;H7BYI2 SMARCAL1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 29.636 24.797 3 0.025584 1 20498 20150910_Q1_SA_NiHu_Masterprac_group13_C 37.157 17.577 1193600 0 363450 830170 0 0 0 7392 1567 7289 32518;32519 21424 21424 1 SSQGSSSSTQSAPSETASASKEK Unmodified 2228.004 0.0040419231 1160 Q9ULU4-14;Q2HXV3;Q9ULU4-12;Q9ULU4-13;B7ZM62;H7C4X9;Q9ULU4-8;Q2HXV1;Q9ULU4-9;F8WAN7;Q9ULU4-5;Q9ULU4-10;Q9ULU4-7;E7ETU8;F5H0X3;Q9ULU4-4;Q9ULU4-3;Q9ULU4-6;H7C0U2;Q9ULU4;Q9ULU4-11;Q9ULU4-2 ZMYND8 Protein kinase C-binding protein 1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 37.01 32.457 3 3.5911E-10 4 26203 20150910_Q1_SA_NiHu_Masterprac_group13_C 79.467 63.482 15051000 0 2224900 4475800 917790 2292200 5140000 7393 1160 7290 32520;32521;32522;32523;32524 21425;21426;21427;21428 21425 4 SSQIGSSQLLK Unmodified 1146.6245 0.62445203 159 Q9P2N6-8;F8W894;B4E1W4;E7EU88;Q9P2N6-6;Q9P2N6-2;Q9P2N6-5;Q9P2N6-4;Q9P2N6-3;Q9P2N6 KANSL3 KAT8 regulatory NSL complex subunit 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 95.536 90.284 2 7.4188E-20 2 61821 20150910_Q1_SA_NiHu_Masterprac_group15_B 119.03 62.594 11930000 0 1710300 0 2281100 2173000 5765900 7394 159 7291 32525;32526;32527;32528 21429;21430 21429 2 SSQIGTGDLK Unmodified 1004.5138 0.51383895 516 Q9Y4C1;F5H4E6;F5H070;F8WE62 KDM3A Lysine-specific demethylase 3A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 65.177 61.099 2 0.0061222 1 42787 20150910_Q1_SA_NiHu_Masterprac_group15_B 85.924 48.196 3542600 432720 797220 0 0 0 2312600 7395 516 7292 32529;32530;32531 21431 21431 1 SSQLLEPAVEETTKK Unmodified 1658.8727 0.87268081 1345 Q8WYP5;Q8WYP5-3;Q8WYP5-2 AHCTF1 Protein ELYS yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 107.23 99.681 3 0.0043846 2 66034 20150910_Q1_SA_NiHu_Masterprac_group10_B 48.391 27.636 7743500 0 2389200 1382300 0 0 3972000 7396 1345 7293 32532;32533;32534 21432;21433 21433 2 SSQPDPDKNPASSK Unmodified 1456.6794 0.67940073 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 30.463 26.878 3 0.0011277 2 18684 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.589 62.667 16719000 178270 3960500 11786000 794220 0 0 7397 919;920 7294 32535;32536;32537;32538 21434;21435 21435 2 SSQPQAGSQGPQTFR Unmodified 1574.7437 0.74373232 1079 Q13356;Q13356-2;H7C2D2 PPIL2 Peptidyl-prolyl cis-trans isomerase-like 2;Peptidyl-prolyl cis-trans isomerase yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 70.653 64.412 2 9.9338E-05 3 44906 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.319 72.378 3572300 621520 0 0 450760 166500 2333600 7398 1079 7295 32539;32540;32541;32542 21436;21437;21438 21436 3 SSQPQAGSQGPQTFRQGVGKYINPAATK Unmodified 2902.4686 0.4685671 1079 Q13356;H7C2D2 PPIL2 Peptidyl-prolyl cis-trans isomerase-like 2;Peptidyl-prolyl cis-trans isomerase yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 130.71 113.57 4 4.8129E-07 2 76652 20150910_Q1_SA_NiHu_Masterprac_group10_C 54.465 41.07 79675000 46060000 0 29353000 0 4261800 0 7399 1079 7296 32543;32544;32545 21439;21440 21440 2 SSQQPSTPQQAPPGQPQQGTFVAHKEIK Unmodified 3000.5053 0.50534653 372 Q86VM9;E7ERS3;H3BRH3 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 98.361 89.137 4 0.00016869 2 61283 20150910_Q1_SA_NiHu_Masterprac_group10_C 48.331 39.222 30447000 21541000 2193900 1626600 1624900 3460500 0 7400 372 7297 32546;32547;32548;32549;32550 21441;21442 21442 2 SSQSSSQQFSGIGR Unmodified 1454.675 0.67498405 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;G5E9L5;Q9UQL5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 2 1 81.141 72.444 2 5.6474E-172 9 56859 20150910_Q1_SA_NiHu_Masterprac_group13_C 165.86 104.05 177570000 18205000 23889000 19856000 8464600 27861000 79291000 7401 1361;629 7298 32551;32552;32553;32554;32555;32556;32557;32558 21443;21444;21445;21446;21447;21448;21449;21450;21451 21444 9 SSRHFCGGTLISPK Unmodified 1545.7722 0.77219568 295 CON__P06868 yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 86.094 73.938 3 0.012568 2 57112 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.223 17.548 3702600 1187800 0 0 0 2514700 0 + 7402 295 7299 32559;32560 21452;21453 21452 2 SSRLGAVPATSGPTTFKQQR Acetyl (Protein N-term) 2130.1182 0.11816466 123 B4DSM5;G3XAG1;Q96ME7 ZNF512 Zinc finger protein 512 yes no 1 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 117.34 108 3 0.00010926 6 77957 20150910_Q1_SA_NiHu_Masterprac_group13_C 71.853 59.785 14809000 3320800 2574300 3381900 1796700 1744900 1990200 7403 123 7300 32561;32562;32563;32564;32565;32566 21454;21455;21456;21457;21458;21459 21455 5 SSRPGREDVGAAGAR Acetyl (Protein N-term) 1526.755 0.75496571 1333 Q8TA86 RP9 Retinitis pigmentosa 9 protein yes yes 1 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 49.599 43.859 3 0.0082294 1 31380 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.149 25.971 8096800 1224300 815990 573340 922890 2571700 1988600 7404 1333 7301 32567;32568;32569;32570;32571;32572 21460 21460 1 SSSADSLSTTKIK Unmodified 1323.6882 0.6881745 1624 Q9UQ84-4;Q9UQ84;H0YAZ2 EXO1 Exonuclease 1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 1 2 2 63.901 56.446 2;3 2.0357E-23 3 45987 20150910_Q1_SA_NiHu_Masterprac_group13_C 113.52 69.753 9739600 234240 1568900 2812000 735160 1138400 3250800 7405 1624 7302 32573;32574;32575;32576;32577;32578;32579;32580;32581;32582 21461;21462;21463 21461 3 SSSGALRGVCSCVEGGSSGK Unmodified 1940.868 0.86802291 487 F5GX68 DNMT1 Cytosine-specific methyltransferase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 92.707 81.11 3 0.0089782 1 55682 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.689 13.923 1396900 0 0 317710 0 301320 777920 7406 487 7303 32583;32584;32585 21464 21464 1 SSSGLLEWESK Unmodified 1221.5877 0.58773217 838 P14866;A6NIT8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 132.63 121.92 2 0 6 81685 20150910_Q1_SA_NiHu_Masterprac_group15_C 199.03 145.28 1147000000 308270000 228910000 184050000 78260000 121070000 226460000 7407 838 7304 32586;32587;32588;32589;32590;32591;32592 21465;21466;21467;21468;21469;21470 21468 6 SSSGQSSGYTQHGSGSGHSSSYEQHGSR Unmodified 2825.1622 0.16216733 308 Q86YZ3;CON__Q86YZ3 HRNR Hornerin yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 38.044 28.87 4 0.0073952 1 23364 20150910_Q1_SA_NiHu_Masterprac_group13_C 32.882 31.557 1127900 0 0 1127900 0 0 0 + 7408 308 7305 32593 21471 21471 1 SSSIIGSSSASHTSQATSGANSK Unmodified 2151.004 0.0039823436 965 P54132;F5H7R6;H0YNU5 BLM Bloom syndrome protein yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 63.162 56.172 3 2.7172E-84 8 39958 20150910_Q1_SA_NiHu_Masterprac_group10_B 119.38 94.424 49444000 8764700 8184700 11570000 5244700 6344900 9335300 7409 965 7306 32594;32595;32596;32597;32598;32599;32600 21472;21473;21474;21475;21476;21477;21478;21479 21477 8 SSSLLIHQAVHTDEKPYK Unmodified 2052.064 0.064003825 1154 Q16600 ZNF239 Zinc finger protein 239 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 99.826 87.862 4 0.0071389 2 60164 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.998 32.109 3249300 0 0 743580 0 827190 1678500 7410 1154 7307 32601;32602;32603 21480;21481 21480 2 SSSPSASLTENEVK Unmodified 1434.6838 0.6838174 779 O96028-5 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 84.443 77.063 2 0.0011147 2 53122 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.279 40.795 7135100 0 2510500 1447800 490390 849740 1836600 7411 779 7308 32604;32605;32606;32607;32608 21482;21483 21483 2 SSSPVNVK Acetyl (Protein N-term) 858.4447 0.44469675 1022;1023 Q00839;B3KX72;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 1 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 63.649 61.566 2 0.03296 1 42937 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.255 8.1382 2994900 0 1305000 0 0 0 1689900 7412 1022;1023 7309 32609;32610 21484 21484 1 SSSQTSTSQLPSK Unmodified 1336.647 0.64703797 1560 Q9NXV6 CDKN2AIP CDKN2A-interacting protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 47.816 42.209 2 5.8007E-61 3 34041 20150910_Q1_SA_NiHu_Masterprac_group13_C 136.6 87.156 15169000 1767000 3068800 5319900 902090 1635100 2475700 7413 1560 7310 32611;32612;32613;32614;32615;32616 21485;21486;21487 21485 3 SSSRGGGGESRSSGAASSAPGGGDGAEYK Unmodified 2585.1338 0.13382732 1421 Q96T37-2;Q96T37-3;Q96T37 RBM15 Putative RNA-binding protein 15 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 45.394 39.478 4 0.025239 1 27864 20150910_Q1_SA_NiHu_Masterprac_group15_B 26.766 17.385 2963900 0 0 1123300 685900 539450 615220 7414 1421 7311 32617;32618;32619;32620 21488 21488 1 SSSRGPYESGSGHSSGLGHQESR Unmodified 2345.0381 0.038076439 308 Q86YZ3;CON__Q86YZ3 HRNR Hornerin yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 40.567 36.576 4 0.0081476 1 24920 20150910_Q1_SA_NiHu_Masterprac_group13_B 40.158 30.103 6703500 679630 1029500 0 2672900 689860 1631600 + 7415 308 7312 32621;32622;32623;32624;32625 21489 21489 1 SSSSGEGTCAVCGDNAACQHYGVR Unmodified 2529.0067 0.00671801 1352 Q92570;Q92570-3;E9PBS2;Q92570-2 NR4A3 Nuclear receptor subfamily 4 group A member 3 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 86.252 79.635 3 9.954E-09 5 59736 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.986 57.941 7590300 2099300 0 0 1021000 3036000 1433900 7416 1352 7313 32626;32627;32628;32629 21490;21491;21492;21493;21494 21493 5 SSSSGSVGESSSKGPRY Unmodified 1657.7544 0.75435658 298 P13645;CON__P13645 KRT10 Keratin, type I cytoskeletal 10 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 49.395 43.28 3 0.014442 2 35436 20150910_Q1_SA_NiHu_Masterprac_group13_C 47.548 36.933 985950 181800 0 582030 222120 0 0 + 7417 298 7314 32630;32631;32632 21495;21496 21496 2 SSSSSSQPEHSAMLVSTAASPSLIK Unmodified 2488.2115 0.21153228 913 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 130.77 121.27 3 1.4721E-12 6 82030 20150910_Q1_SA_NiHu_Masterprac_group13_C 69.071 36.274 81978000 16475000 11103000 18829000 4844800 5577800 25148000 7418 913 7315 32633;32634;32635;32636;32637;32638 21497;21498;21499;21500;21501;21502 21498 6 SSSSSSQPEHSAMLVSTAASPSLIKETTTGYYK Unmodified 3431.6402 0.64024461 913 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 132.11 125.91 4 1.6791E-29 3 85019 20150910_Q1_SA_NiHu_Masterprac_group13_B 77.149 61.761 60559000 0 6930600 19495000 34133000 0 0 7419 913 7316 32639;32640;32641 21503;21504;21505 21503 3 SSSSTNTSLLTSK Unmodified 1311.6518 0.65178899 1560 Q9NXV6 CDKN2AIP CDKN2A-interacting protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 75.474 67.925 2 1.4664E-34 7 47100 20150910_Q1_SA_NiHu_Masterprac_group10_C 121.56 121.56 45801000 11066000 4527700 9576200 4764700 6916900 8949000 7420 1560 7317 32642;32643;32644;32645;32646;32647;32648 21506;21507;21508;21509;21510;21511;21512 21511 7 SSSTALTTNVTEQTEK Unmodified 1695.8163 0.81628814 1345 Q8WYP5;Q8WYP5-3;Q8WYP5-2 AHCTF1 Protein ELYS yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 1 1 1 1 1 90.657 82.779 2 8.1999E-19 4 56378 20150910_Q1_SA_NiHu_Masterprac_group10_B 106.35 75.283 17249000 3025300 3772500 2201000 1297600 2129000 4823900 7421 1345 7318 32649;32650;32651;32652;32653;32654;32655 21513;21514;21515;21516 21515 4 SSSVRFVSTTTSCR Unmodified 1573.7519 0.75185416 307 Q9NSB2;CON__Q9NSB2;CON__Q6ISB0 KRT84 Keratin, type II cuticular Hb4 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 71.572 71.572 3 0.0011274 1 49497 20150910_Q1_SA_NiHu_Masterprac_group13_B 76.311 48.63 1576300 0 0 0 1576300 0 0 + 7422 307 7319 32656 21517 21517 1 SSSVSPSSWKSPPASPESWK Unmodified 2117.0065 0.006548526 1399 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 130.17 129.86 3 0.0014678 1 83155 20150910_Q1_SA_NiHu_Masterprac_group13_B 52.365 32.874 4038100 0 2339300 0 1698700 0 0 7423 1399 7320 32657;32658 21518 21518 1 SSTAAYQPIK Unmodified 1064.5502 0.55022446 965 P54132;F5H7R6;H0YNU5 BLM Bloom syndrome protein yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 70.857 62.124 2 0.013991 2 43627 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.847 42.784 6038300 638810 1323800 1302200 0 767630 2005900 7424 965 7321 32659;32660;32661;32662;32663 21519;21520 21520 2 SSTAAYQPIKEGRPIK Unmodified 1744.9472 0.94718315 965 P54132;F5H7R6;H0YNU5 BLM Bloom syndrome protein yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 81.821 72.984 3;4 4.7859E-26 7 57546 20150910_Q1_SA_NiHu_Masterprac_group13_C 107.35 83.95 22234000 2116600 2099000 7968300 2343700 3564200 4141900 7425 965 7322 32664;32665;32666;32667;32668;32669;32670 21521;21522;21523;21524;21525;21526;21527 21522 7 SSTATHPPGPAVQLNKTPSSSK Unmodified 2191.1233 0.12330962 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 80.928 73.383 3;4 1.0496E-134 12 51509 20150910_Q1_SA_NiHu_Masterprac_group10_C 142.27 102.22 235190000 63237000 23349000 41525000 29651000 48756000 28671000 7426 1111 7323 32671;32672;32673;32674;32675;32676;32677;32678;32679;32680;32681;32682 21528;21529;21530;21531;21532;21533;21534;21535;21536;21537;21538;21539 21539 12 SSTATHPPGPAVQLNKTPSSSKK Unmodified 2319.2183 0.21827264 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By matching By matching 3 3 4 3 2 2 70.078 62.408 4;5 6.2326E-06 5 50794 20150910_Q1_SA_NiHu_Masterprac_group13_C 62.325 51.77 109990000 24865000 12073000 17888000 23590000 15262000 16307000 7427 1111 7324 32683;32684;32685;32686;32687;32688;32689;32690;32691;32692;32693;32694;32695;32696;32697;32698;32699 21540;21541;21542;21543;21544 21541 4 SSTEIPLETCCSSELKGGGSGTSLER Unmodified 2741.2484 0.24838807 1318 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 130.19 129.59 3 9.6537E-09 2 83069 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.437 49.148 11717000 0 11717000 0 0 0 0 7428 1318 7325 32700 21545;21546 21546 2 SSTKQPTVGGTSSTPR Unmodified 1589.8009 0.80091285 1215 Q68CP9-3;Q68CP9;F8VWP4;Q68CP9-2;E7ENG3;F8W108;F8WCU9 ARID2 AT-rich interactive domain-containing protein 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 44.51 39.204 3 1.7713E-18 6 27685 20150910_Q1_SA_NiHu_Masterprac_group15_B 105.53 78.197 10653000 1285500 1137400 1591000 828150 2199400 3611700 7429 1215 7326 32701;32702;32703;32704;32705;32706 21547;21548;21549;21550;21551;21552 21549 6 SSTKQPTVGGTSSTPRAQK Unmodified 1916.9916 0.99156716 1215 Q68CP9-3;Q68CP9;F8VWP4;Q68CP9-2;E7ENG3;F8W108;F8WCU9 ARID2 AT-rich interactive domain-containing protein 2 yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 40.613 35.574 4 0.001117 4 24156 20150910_Q1_SA_NiHu_Masterprac_group13_B 57.936 35.11 14263000 2497500 1627600 3207500 1695100 1692200 3543100 7430 1215 7327 32707;32708;32709;32710;32711;32712 21553;21554;21555;21556 21553 4 SSTLGPSALK Unmodified 959.52876 0.52876073 136 B4DX32;O60870;F5GXB3 KIN DNA/RNA-binding protein KIN17 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 85.653 78.273 2 0.012231 2 53880 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.412 18.157 29009000 0 3948500 5613700 2464800 5086000 11896000 7431 136 7328 32713;32714;32715;32716;32717 21557;21558 21558 2 SSTLTSSRLATGEEEGGGSSSK Unmodified 2126.9927 0.99274896 666 H7C1H8;P00519;P00519-2 ABL1 Tyrosine-protein kinase ABL1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 76.664 69.595 3 0.0024716 2 53735 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.433 33.806 3437500 801130 954130 0 0 743560 938710 7432 666 7329 32718;32719;32720;32721 21559;21560 21560 2 SSTPLPTISSSAENTR Unmodified 1646.8111 0.81114318 913;914 P42166;P42167;P42167-2;G5E972;H0YJH7 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 2 1 117.67 107.32 2 0.015691 3 75824 20150910_Q1_SA_NiHu_Masterprac_group15_C 42.149 20.902 20028000 1889900 3007800 2533500 1609600 4239500 6747400 7433 913;914 7330 32722;32723;32724;32725;32726;32727;32728 21561;21562;21563 21561 3 SSTQFNKGPSYGLSAEVK Acetyl (Protein N-term) 1940.948 0.94797101 80 E7ENR3;B4DDF4;Q99439;B4DUT8;Q99439-2 CNN2 Calponin-2 yes no 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1 131.04 123.84 2;3 0 7 86112 20150910_Q1_SA_NiHu_Masterprac_group15_B 238.19 206.78 95094000 9274900 23933000 10645000 8064400 2714400 40462000 7434 80 7331 32729;32730;32731;32732;32733;32734;32735;32736 21564;21565;21566;21567;21568;21569;21570 21566 7 SSTQFNKGPSYGLSAEVKNR Acetyl (Protein N-term) 2211.092 0.09200949 80 E7ENR3;B4DDF4;Q99439;B4DUT8;Q99439-2 CNN2 Calponin-2 yes no 1 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 121.99 112.53 3 1.2226E-26 4 80148 20150910_Q1_SA_NiHu_Masterprac_group13_C 101.49 88.056 21089000 2910600 1680100 9980700 900480 476660 5140100 7435 80 7332 32737;32738;32739;32740;32741;32742 21571;21572;21573;21574 21571 4 SSTTVSSFANSKPGSAK Unmodified 1654.8162 0.81622856 1090 Q13620-1;Q13620 CUL4B Cullin-4B yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching 2 1 1 1 1 1 74.565 67.017 3 0.0024016 3 46714 20150910_Q1_SA_NiHu_Masterprac_group13_B 53.395 33.041 11152000 2097000 1748700 2148600 1089800 1272300 2795800 7436 1090 7333 32743;32744;32745;32746;32747;32748;32749 21575;21576;21577 21575 3 SSTVAPAQPDGAESEWTDVETR Unmodified 2332.0455 0.045512807 660 Q02241-2;H7BYN4;Q02241;B4E1K0 KIF23 Kinesin-like protein KIF23 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.14 130.53 2 1.2123E-09 1 83949 20150910_Q1_SA_NiHu_Masterprac_group10_B 83.871 73.604 2981700 0 2981700 0 0 0 0 7437 660 7334 32750 21578 21578 1 SSTVESEIASEEK Unmodified 1394.6413 0.64128389 1633 Q9Y2K1;Q9Y2K1-2 ZBTB1 Zinc finger and BTB domain-containing protein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 99.701 91.323 2 0.0013561 5 61519 20150910_Q1_SA_NiHu_Masterprac_group13_B 89.507 56.574 13492000 2676400 1843800 2289500 2088600 1340500 3252900 7438 1633 7335 32751;32752;32753;32754;32755;32756;32757 21579;21580;21581;21582;21583 21579 5 SSVETTPSVIQHVGQPPATPAK Unmodified 2230.1594 0.15936077 1237 Q6W2J9;Q6W2J9-4;Q6W2J9-2;H7BYY2;Q6W2J9-3 BCOR BCL-6 corepressor yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 130.54 114.85 3 0.001977 1 76163 20150910_Q1_SA_NiHu_Masterprac_group10_C 49.559 36.581 5113700 5113700 0 0 0 0 0 7439 1237 7336 32758 21584 21584 1 SSVKTPEPVVPTAPEPHPTTSTDQPVTPK Unmodified 3023.5451 0.54514566 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 124.92 114.58 3;4 8.8397E-30 9 80295 20150910_Q1_SA_NiHu_Masterprac_group13_C 84.214 71.992 80579000 40056000 3667100 19289000 3891600 6968900 6706200 7440 1109 7337 32759;32760;32761;32762;32763;32764;32765 21585;21586;21587;21588;21589;21590;21591;21592;21593 21586 9 SSVKTPETVVPTALELQPSTSTDRPVTSEPTSQATR Unmodified 3796.9331 0.93305582 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;H0Y6Z8 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 2 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 132.69 127.26 4 1.4815E-05 2 78914 20150910_Q1_SA_NiHu_Masterprac_group10_C 42.039 26.442 34127000 20122000 8893400 0 5111100 0 0 7441 1109 7338 32766;32767;32768 21594;21595 21595 1 SSVKTPETVVPTAPELQASASTDQPVTSEPTSR Unmodified 3396.6896 0.68963765 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.84 131.24 3 7.2564E-13 1 84651 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.929 50.302 14299000 0 14299000 0 0 0 0 7442 1109 7339 32769 21596 21596 1 SSVKTPETVVPTAPELQASASTDQPVTSEPTSRTTR Unmodified 3754.8861 0.88610562 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 130.99 130.99 4 0.0026242 1 83985 20150910_Q1_SA_NiHu_Masterprac_group13_B 25.199 15.104 5800600 0 0 0 5800600 0 0 7443 1109 7340 32770 21597 21597 1 SSVKTPETVVPTAPELQPSTSTDQPVTPEPTSQATR Unmodified 3762.88 0.87995761 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 132.87 117.19 3 0.011945 1 78589 20150910_Q1_SA_NiHu_Masterprac_group10_C 33.743 21.279 18437000 18437000 0 0 0 0 0 7444 1109 7341 32771 21598 21598 0 SSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQSK Unmodified 3893.9535 0.95345691 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 133.07 131.21 4 7.3238E-56 2 86049 20150910_Q1_SA_NiHu_Masterprac_group13_B 82.294 77.438 82010000 0 32496000 0 18394000 0 31120000 7445 1109 7342 32772;32773;32774 21599;21600 21599 1 SSVLIAQQTDTSDPEK Unmodified 1717.837 0.83702358 921 P46060;F8W7I9 RANGAP1 Ran GTPase-activating protein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 100.48 91.212 2 5.2164E-18 6 61381 20150910_Q1_SA_NiHu_Masterprac_group10_B 102.39 102.39 18854000 3192500 7216600 3325800 2749300 2370100 0 7446 921 7343 32775;32776;32777;32778;32779 21601;21602;21603;21604;21605;21606 21605 6 SSVLTMNR Unmodified 906.4593 0.45930096 1080 Q13415 ORC1 Origin recognition complex subunit 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 73.996 72.608 2 0.019325 1 50216 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.438 26.281 5263700 0 750360 0 565220 0 3948100 7447 1080 7344 32780;32781;32782 21607 21607 1 SSVPASDDAYPEIEK Unmodified 1606.7362 0.7362469 777 Q9NZH5-2;Q9NZH5;O95997 PTTG2;PTTG1 Securin-2;Securin yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 109.15 101.63 2 1.8319E-05 3 67390 20150910_Q1_SA_NiHu_Masterprac_group10_B 90.229 58.649 4880500 0 1351000 1631100 0 0 1898400 7448 777 7345 32783;32784;32785 21608;21609;21610 21610 2 SSVSRVPCNVEGISPELEK Unmodified 2086.0365 0.036468446 662 H7C0B2;H7C2L5;Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 129.7 129.09 3 0.00091263 1 82615 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.757 27.281 1651300 0 1651300 0 0 0 0 7449 662 7346 32786 21611 21611 1 SSVVPSVILKPENIKK Unmodified 1737.04 0.040020906 1080 Q13415 ORC1 Origin recognition complex subunit 1 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 3 2 1 129.05 121.52 3;4 6.008E-118 10 85838 20150910_Q1_SA_NiHu_Masterprac_group15_B 144.8 140.19 193600000 26259000 105810000 8996100 15655000 7349400 29534000 7450 1080 7347 32787;32788;32789;32790;32791;32792;32793;32794;32795;32796 21612;21613;21614;21615;21616;21617;21618;21619;21620;21621 21617 10 SSYIAASTAKPPK Unmodified 1319.7085 0.70851601 1248 Q7Z2T5;Q7Z2T5-2 TRMT1L TRMT1-like protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 70.275 63.673 3 0.038987 1 44615 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.825 15.166 3310300 0 1132500 0 0 1074300 1103500 7451 1248 7348 32797;32798;32799 21622 21622 1 SSYIAASTAKPPKEILK Unmodified 1803.0142 0.014200086 1248 Q7Z2T5;Q7Z2T5-2 TRMT1L TRMT1-like protein yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 2 1 1 2 110 101.72 3;4 0.00242 2 67025 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.47 59.856 15356000 1702900 4746000 2136600 0 376660 6393600 7452 1248 7349 32800;32801;32802;32803;32804;32805;32806 21623;21624 21624 1 SSYLEYQK Unmodified 1016.4815 0.48147619 770 O95347-2;O95347;Q5T821;F5GZR0 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 80.423 73.116 2 0.029084 1 50616 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.692 40.406 2672200 308440 156090 324460 0 0 1883200 7453 770 7350 32807;32808;32809;32810 21625 21625 1 SSYNCPLCEK Unmodified 1256.5166 0.51655784 1357 Q92766-3;Q92766;Q92766-2;C9JU34;C9JE09;C9JPJ6 RREB1 Ras-responsive element-binding protein 1 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 75.999 68.7 2 0.019916 2 54559 20150910_Q1_SA_NiHu_Masterprac_group13_C 63.694 51.197 7878900 0 1156100 1351800 1277200 1237600 2856100 7454 1357 7351 32811;32812;32813;32814;32815 21626;21627 21627 2 SSYSRFSSSGGGGGGGRFSSSSGYGGGSSR Unmodified 2778.1978 0.19782456 899 P35527 KRT9 Keratin, type I cytoskeletal 9 yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 79.529 79.529 4 0.011141 1 54386 20150910_Q1_SA_NiHu_Masterprac_group13_B 28.923 22.197 1884800 0 0 0 1884800 0 0 + 7455 899 7352 32816 21628 21628 1 STAAVPELK Acetyl (Protein N-term) 956.51786 0.51786169 1440 Q9BRJ7;H3BTC7;Q9BRJ7-2 NUDT16L1 Protein syndesmos yes no 1 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 2 2 122.68 111.5 1;2 0.017174 3 80119 20150910_Q1_SA_NiHu_Masterprac_group13_C 58.246 24.074 19610000 0 0 5350000 0 0 14260000 7456 1440 7353 32817;32818;32819;32820 21629;21630;21631 21630 3 STAAVPELKQISR Acetyl (Protein N-term) 1440.7936 0.79364262 1440 Q9BRJ7;H3BTC7;Q9BRJ7-2 NUDT16L1 Protein syndesmos yes no 1 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 131.97 126.65 2 5.6215E-155 4 86965 20150910_Q1_SA_NiHu_Masterprac_group15_B 162.67 90.377 294750000 39711000 104260000 0 15846000 0 134940000 7457 1440 7354 32821;32822;32823;32824 21632;21633;21634;21635 21633 4 STAAVPELKQISRVEAMR Acetyl (Protein N-term) 2027.0834 0.083359059 1440 Q9BRJ7;H3BTC7;Q9BRJ7-2 NUDT16L1 Protein syndesmos yes no 1 0 2 By matching By matching By matching By MS/MS By matching By matching 1 133.63 133.63 3 0.0053559 1 86721 20150910_Q1_SA_NiHu_Masterprac_group13_B 46.701 26.177 16210000 0 0 0 16210000 0 0 7458 1440 7355 32825 21636 21636 1 STAAVPELKQISRVEAMR Acetyl (Protein N-term);Oxidation (M) 2043.0783 0.078273681 1440 Q9BRJ7;H3BTC7;Q9BRJ7-2 NUDT16L1 Protein syndesmos yes no 1 1 2 By matching By MS/MS By matching By matching By matching By matching 1 132.66 132.06 3 0.00051534 1 85578 20150910_Q1_SA_NiHu_Masterprac_group10_B 56.514 37.935 15452000 0 15452000 0 0 0 0 7459 1440 7355 32826 21637 21637 166 1 STACQMLVCYAK Unmodified 1430.6356 0.63562712 155 B4E0R6;O00410-2;O00410;H0Y8C6;O00410-3 IPO5 Importin-5 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 131.45 126.02 2 2.2347E-07 2 83845 20150910_Q1_SA_NiHu_Masterprac_group13_B 104.07 73.002 29968000 11288000 11994000 0 6687200 0 0 7460 155 7356 32827;32828;32829 21638;21639 21638 2 STADALDDENTFK Acetyl (Protein N-term) 1467.6365 0.63653286 558 P49959-2;F8W7U8;P49959;F5H742;F5H256;F5GXT0 MRE11A Double-strand break repair protein MRE11A yes no 1 0 0 By matching By MS/MS By matching By matching By matching By matching 1 128.41 127.8 2 0.0011637 2 81745 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.54 55.909 2025500 0 2025500 0 0 0 0 7461 558 7357 32830 21640;21641 21641 2 STADSGGEGLETAPK Unmodified 1418.6525 0.65251728 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 65.102 57.357 2 6.0336E-05 4 45964 20150910_Q1_SA_NiHu_Masterprac_group15_C 88.768 52.959 10139000 0 0 2060100 1111100 2024400 4943100 7462 1325 7358 32831;32832;32833;32834 21642;21643;21644;21645 21645 4 STAELEAEELEK Unmodified 1347.6406 0.64055561 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 109.82 100.99 2 2.0413E-79 7 68541 20150910_Q1_SA_NiHu_Masterprac_group15_B 145.31 145.31 199460000 16576000 52802000 29479000 15303000 13077000 72219000 7463 1611 7359 32835;32836;32837;32838;32839;32840;32841 21646;21647;21648;21649;21650;21651;21652 21648 7 STAGDTHLGGEDFDNR Unmodified 1690.7183 0.71830543 824 P11142;E9PKE3;P11142-2;E9PN89;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 84.964 77.386 3 0.032267 1 58442 20150910_Q1_SA_NiHu_Masterprac_group15_C 36.993 20.255 7477600 858830 1882500 765650 608080 1344600 2018000 7464 824 7360 32842;32843;32844;32845;32846;32847 21653 21653 1 STAGIMNAEAATK Unmodified 1263.6129 0.61290107 1280 Q8IWC1-2;Q8IWC1;H7BY77;Q8IWC1-3 MAP7D3 MAP7 domain-containing protein 3 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 86.829 79.2 2 3.3904E-11 3 54491 20150910_Q1_SA_NiHu_Masterprac_group15_B 109.95 74.994 5207900 373950 816150 494790 399030 1247900 1876100 7465 1280 7361 32848;32849;32850;32851;32852;32853 21654;21655;21656 21654 2 STAGSAAAMAGAK Unmodified 1092.5234 0.52335778 1606 Q9ULG1 INO80 DNA helicase INO80 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 55.673 49.431 2 0.0022322 3 40318 20150910_Q1_SA_NiHu_Masterprac_group13_C 67.997 47.867 3636600 599460 458060 624000 351920 893460 709700 7466 1606 7362 32854;32855;32856;32857;32858;32859 21657;21658;21659 21658 3 STAPAVAYDSK Unmodified 1108.5401 0.5400537 1403 Q96KR1;B5MEH6;Q05D65 ZFR Zinc finger RNA-binding protein yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 64.952 57.925 2 0.012879 5 42665 20150910_Q1_SA_NiHu_Masterprac_group10_C 61.48 30.794 80750000 7905800 12108000 10422000 4161100 20238000 25915000 7467 1403 7363 32860;32861;32862;32863;32864;32865 21660;21661;21662;21663;21664 21664 5 STAPETAIECTQAPAPASEDEK Unmodified 2302.0271 0.027085551 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 2 1 108.89 100.49 2;3 0.0030769 3 68466 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.808 31.14 176130000 0 80841000 26337000 2021000 2297500 64629000 7468 486 7364 32866;32867;32868;32869;32870;32871;32872 21665;21666;21667 21666 3 STAPETAIECTQAPAPASEDEKVVVEPPEGEEK Unmodified 3494.6247 0.62465413 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 131.29 123.43 3 3.1607E-62 4 83779 20150910_Q1_SA_NiHu_Masterprac_group10_B 96.793 91.618 115460000 0 11246000 78242000 0 0 25971000 7469 486 7365 32873;32874;32875 21668;21669;21670;21671 21671 4 STCDSENLAVINK Unmodified 1449.677 0.67695789 1066 Q12986;Q12986-2;F5GXD0;Q12986-3 NFX1 Transcriptional repressor NF-X1 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 98.309 89.285 2 0.00012815 4 61165 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.781 76.204 13840000 0 0 2496500 1892700 3967300 5483300 7470 1066 7366 32876;32877;32878;32879 21672;21673;21674;21675 21674 4 STCIYGGAPK Unmodified 1052.4961 0.4960804 1361;629;853 P17844;E7ETL9;Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 69.88 62.489 2 0.0093219 6 44074 20150910_Q1_SA_NiHu_Masterprac_group13_B 76.228 31.206 24881000 2897800 3641600 2912500 1735700 5168800 8524300 7471 853;1361;629 7367 32880;32881;32882;32883;32884;32885;32886 21676;21677;21678;21679;21680;21681 21676 6 STCIYGGAPKGPQIR Unmodified 1603.8141 0.81406049 1361;629;853 P17844;E7ETL9;Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 100.7 94.134 3 4.0825E-14 7 68456 20150910_Q1_SA_NiHu_Masterprac_group15_C 96.059 59.114 211500000 20961000 32379000 16399000 24103000 0 117660000 7472 853;1361;629 7368 32887;32888;32889;32890;32891;32892 21682;21683;21684;21685;21686;21687;21688 21686 7 STCIYGGAPKGPQIRDLER Unmodified 2117.0688 0.068771627 1361;629;853 P17844;E7ETL9;Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 no no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 123.11 113.65 3;4 0.0036936 3 80346 20150910_Q1_SA_NiHu_Masterprac_group13_C 59.15 45.531 74522000 34590000 5791900 16665000 2699200 1755400 13021000 7473 853;1361;629 7369 32893;32894;32895;32896;32897;32898 21689;21690;21691 21689 3 STDDRGEPVTHYLVK Unmodified 1715.8479 0.84786304 1578 Q9P2D1;Q9P2D1-2 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 102.58 92.883 3 0.0026612 2 63499 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.68 39.318 5673800 0 0 0 0 1781400 3892400 7474 1578 7370 32899;32900 21692;21693 21692 2 STDNQRQQQLNDVVK Unmodified 1771.8813 0.88128843 904 P38432 COIL Coilin yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 72.5 65.156 3 1.7365E-86 3 45327 20150910_Q1_SA_NiHu_Masterprac_group15_B 137.09 106.98 28712000 2106500 4408500 2907000 1747800 5407900 12134000 7475 904 7371 32901;32902;32903;32904;32905;32906 21694;21695;21696 21694 3 STEEQELEK Unmodified 1091.4982 0.49824846 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 46.197 39.504 2 0.0082056 2 31704 20150910_Q1_SA_NiHu_Masterprac_group13_C 98.044 66.55 6348600 0 2123800 4224900 0 0 0 7476 1611 7372 32907;32908 21697;21698 21697 2 STEFRNIQKLPVESK Unmodified 1774.9577 0.95774784 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 108.36 99.919 3;4 6.608E-42 8 73306 20150910_Q1_SA_NiHu_Masterprac_group13_C 120.21 102.74 319410000 30540000 52291000 53030000 11533000 68656000 103360000 7477 919;920 7373 32909;32910;32911;32912;32913;32914;32915;32916;32917;32918;32919 21699;21700;21701;21702;21703;21704;21705;21706 21700 7 STELLIR Unmodified 830.48617 0.48616764 82 B4DEB1;Q6NXT2;Q71DI3;Q5TEC6;Q16695;P84243;P68431 H3F3A;H3F3C;HIST2H3A;HIST2H3PS2;HIST3H3;HIST1H3A Histone H3;Histone H3.3C;Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 102.42 95.248 2 2.4959E-31 3 63838 20150910_Q1_SA_NiHu_Masterprac_group10_B 138.85 41.375 13618000 0 2530500 0 0 4534800 6552800 7478 82 7374 32920;32921;32922 21707;21708;21709 21709 3 STESDVKADGDSKGSEEVDSHCK Unmodified 2466.0453 0.045254811 1651 Q9Y4W2-3;Q9Y4W2-2;Q9Y4W2;Q9Y4W2-4 LAS1L Ribosomal biogenesis protein LAS1L yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 52.23 45.271 4 1.6093E-08 7 37238 20150910_Q1_SA_NiHu_Masterprac_group13_C 68.189 63.775 7652100 1657100 1074300 1925500 1063500 1931700 0 7479 1651 7375 32923;32924;32925;32926;32927 21710;21711;21712;21713;21714;21715;21716 21712 7 STESLQANVQR Unmodified 1231.6157 0.61567826 880 P26373 RPL13 60S ribosomal protein L13 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 67.42 60.276 2 8.4274E-107 7 42244 20150910_Q1_SA_NiHu_Masterprac_group15_B 160.53 120.38 15256000 1551000 1266400 785860 1152900 4515600 5984200 7480 880 7376 32928;32929;32930;32931;32932;32933 21717;21718;21719;21720;21721;21722;21723 21719 7 STESLQANVQRLK Unmodified 1472.7947 0.79470526 880 P26373 RPL13 60S ribosomal protein L13 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 99.774 91.644 3 2.8108E-05 5 62160 20150910_Q1_SA_NiHu_Masterprac_group10_C 96.756 73.87 9204400 1550200 1288300 882370 1470000 1664700 2348800 7481 880 7377 32934;32935;32936;32937;32938;32939 21724;21725;21726;21727;21728 21728 5 STEVEILEK Unmodified 1046.5496 0.54955575 1161 Q2TAK8 MUM1 PWWP domain-containing protein MUM1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 106.63 96.406 2 4.0521E-08 2 64511 20150910_Q1_SA_NiHu_Masterprac_group10_B 114.51 51.297 20009000 0 0 4544800 0 0 15464000 7482 1161 7378 32940;32941;32942 21729;21730 21730 2 STFREESPLRIK Unmodified 1461.794 0.79397698 1563;452 Q9NYF8-2;Q9NYF8;Q9NYF8-4;E9PK09;E9PQN2;E9PKI6;E9PJA7;Q9NYF8-3;E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 2 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 100.18 92.046 3 0.0056104 3 61721 20150910_Q1_SA_NiHu_Masterprac_group10_C 79.036 65.026 13819000 3708400 1070000 2653100 2106400 2234800 2046600 7483 1563;452 7379 32943;32944;32945;32946;32947;32948 21731;21732;21733 21733 3 STFSFSMTKPSEK Unmodified 1475.6966 0.6966307 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 121.99 112.52 3 0.001973 7 78564 20150910_Q1_SA_NiHu_Masterprac_group15_C 72.891 57.729 20736000 3484100 2887100 3558000 1929400 1374800 7502400 7484 531 7380 32949;32950;32951;32952;32953;32954 21734;21735;21736;21737;21738;21739;21740 21737 7 STGEAFVQFASQEIAEK Unmodified 1840.8843 0.88430813 322;970 D6RBM0;E9PCY7;P31943;G8JLB6;D6RIU0;E5RGV0;E7EN40;E5RGH4;H0YB39;P55795;B4DFK9 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H2, N-terminally processed no no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 134.69 126.85 2 1.784E-278 2 79729 20150910_Q1_SA_NiHu_Masterprac_group10_C 170 126.41 0 0 0 0 0 0 0 7485 322;970 7381 32955;32956 21741;21742 21742 2 STGEPLGHVPAR Unmodified 1219.6309 0.63093439 1367 Q93052;C9JUT4;C9JE51;C9J2R5;C9JIY7;C9JT42;C9J3U9;C9J1K7;C9J5C8;C9J4E3 LPP Lipoma-preferred partner yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 66.705 64.623 3 0.0081004 1 45062 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.198 39.592 2173900 0 748250 0 0 0 1425700 7486 1367 7382 32957;32958 21743 21743 1 STGSATSLASQGER Unmodified 1350.6375 0.63753591 604 Q5SW79-2;Q5SW79-3;H0Y2V6;Q5SW79 CEP170 Centrosomal protein of 170 kDa yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 58.883 52.485 2 0.0068957 3 42953 20150910_Q1_SA_NiHu_Masterprac_group13_C 53.491 30.373 3004600 0 172400 600560 519890 634500 1077300 7487 604 7383 32959;32960;32961;32962;32963 21744;21745;21746 21744 3 STGTETGSNINVNSELNPSTGNRSR Unmodified 2591.2172 0.21716302 1159 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 105.56 95.864 3 0.0029706 1 64229 20150910_Q1_SA_NiHu_Masterprac_group10_B 41.115 30.349 3584100 0 1450700 2133400 0 0 0 7488 1159 7384 32964;32965 21747 21747 1 STIGAYFLKPK Unmodified 1223.6914 0.69140938 1331 Q8NI36;D6R922 WDR36 WD repeat-containing protein 36 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 131.38 123.6 2 8.0239E-05 4 86457 20150910_Q1_SA_NiHu_Masterprac_group15_B 102.95 77.658 32052000 0 8768800 0 0 5879800 17403000 7489 1331 7385 32966;32967;32968 21748;21749;21750;21751 21749 4 STLADYSAQK Unmodified 1082.5244 0.52440364 364 E7EQT4;Q9UKV3;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 2 1 1 1 69.321 61.481 2 0.012231 5 45321 20150910_Q1_SA_NiHu_Masterprac_group10_C 70.412 47.039 11199000 3132800 3055100 1892600 0 2854500 263840 7490 364 7386 32969;32970;32971;32972;32973;32974;32975;32976 21752;21753;21754;21755;21756 21756 5 STLIPILHQK Unmodified 1148.6917 0.69174374 1159 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 131.13 124.25 2 0.0052997 3 78123 20150910_Q1_SA_NiHu_Masterprac_group10_C 86.882 72.796 14430000 6123600 0 0 1156800 0 7149200 7491 1159 7387 32977;32978;32979 21757;21758;21759 21759 3 STLIPILHQKAK Unmodified 1347.8238 0.82382054 1159 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 114.45 101.26 3 0.036823 1 67849 20150910_Q1_SA_NiHu_Masterprac_group10_C 45.653 32.731 682820 682820 0 0 0 0 0 7492 1159 7388 32980 21760 21760 1 STLLLNLDFGEPPPK Acetyl (Protein N-term) 1681.8927 0.89268797 1509 Q9H9L3 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 134.17 122.74 2 1.0831E-261 5 80254 20150910_Q1_SA_NiHu_Masterprac_group10_C 180.95 136.1 184540000 104660000 30314000 49572000 0 0 0 7493 1509 7389 32981;32982;32983;32984;32985 21761;21762;21763;21764;21765 21765 5 STLSNQLLGRK Unmodified 1215.6935 0.69353465 748 O75616;O75616-2 ERAL1 GTPase Era, mitochondrial yes no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 2 1 98.953 89.796 3 0.0056992 3 66033 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.694 35.411 11909000 0 1208400 1927300 1137500 5092500 2543700 7494 748 7390 32986;32987;32988;32989;32990;32991 21766;21767;21768 21767 3 STLSQTVPSK Unmodified 1046.5608 0.56078914 1533 Q9NQW6;Q9NQW6-2 ANLN Actin-binding protein anillin yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 64.922 57.895 2 0.0042247 4 41153 20150910_Q1_SA_NiHu_Masterprac_group10_B 88.134 54.389 8495200 740380 1248700 1253400 432020 1466700 3354000 7495 1533 7391 32992;32993;32994;32995;32996;32997 21769;21770;21771;21772 21770 4 STLSQTVPSKGELSR Unmodified 1588.842 0.84204938 1533 Q9NQW6;Q9NQW6-2 ANLN Actin-binding protein anillin yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 91.363 84.494 3 0.0086684 1 57876 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.351 33.842 23476000 0 9133600 0 0 146800 14195000 7496 1533 7392 32998;32999;33000 21773 21773 1 STLTDSLVCK Unmodified 1122.5591 0.55907458 833 P13639;F5H370;B4DPU3;B4DMC6 EEF2 Elongation factor 2 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 109.86 100.27 2 0.0032681 2 68314 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.679 71.859 12365000 0 0 2899000 2279000 877920 6309200 7497 833 7393 33001;33002;33003;33004 21774;21775 21775 2 STMLYNKFK Unmodified 1130.5794 0.57941609 741 O75475 PSIP1 PC4 and SFRS1-interacting protein yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 96.593 87.52 2 0.015346 3 59056 20150910_Q1_SA_NiHu_Masterprac_group10_C 94.309 62.439 23902000 1806500 0 4832900 1770300 6634600 8858000 7498 741 7394 33005;33006;33007;33008;33009 21776;21777;21778 21778 3 STMQELNSR Unmodified 1064.4921 0.49205765 899 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 58.792 52.267 2 0.014268 5 37034 20150910_Q1_SA_NiHu_Masterprac_group13_B 78.264 48.713 43716000 1894300 8124600 21058000 2624700 5462900 4552200 + 7499 899 7395 33010;33011;33012;33013;33014;33015 21779;21780;21781;21782;21783 21779 5 STMQELNSRLASYLDK Oxidation (M) 1870.9095 0.90947702 899 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 1 1 By matching By MS/MS By matching By matching By matching By matching 1 132.43 131.82 3 0.013952 1 85293 20150910_Q1_SA_NiHu_Masterprac_group10_B 81.128 63.988 9337300 0 9337300 0 0 0 0 + 7500 899 7396 33016 21784 21784 98 1 STNKGTAYTFFTPGNLK Unmodified 1845.9261 0.92611336 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 3 1 2 1 131.05 124.36 2;3 2.0864E-209 7 86084 20150910_Q1_SA_NiHu_Masterprac_group13_B 161.94 147.37 247160000 71040000 50163000 53162000 50115000 22681000 0 7501 1361;629 7397 33017;33018;33019;33020;33021;33022;33023;33024 21785;21786;21787;21788;21789;21790;21791 21786 7 STNKGTAYTFFTPGNLKQAR Unmodified 2201.1229 0.12291569 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 1 131.4 121.72 3;4 4.8997E-100 8 77750 20150910_Q1_SA_NiHu_Masterprac_group10_C 131.37 113.95 236380000 57151000 57949000 48730000 66030000 6520900 0 7502 1361;629 7398 33025;33026;33027;33028;33029;33030;33031 21792;21793;21794;21795;21796;21797;21798;21799 21799 7 STNRIVEDDASISSCNK Unmodified 1894.8691 0.86906877 1253 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 WAPAL Wings apart-like protein homolog yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 81.338 73.793 3 8.9726E-08 9 57988 20150910_Q1_SA_NiHu_Masterprac_group13_C 92.236 92.236 19604000 918360 2081600 3029100 3744100 5219400 4611500 7503 1253 7399 33032;33033;33034;33035;33036;33037 21800;21801;21802;21803;21804;21805;21806;21807;21808 21803 8 STNVVYQAHHVSR Unmodified 1496.7484 0.74842377 368 O95340;H0Y373;E7ER89;O95340-2 PAPSS2 Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 54.835 48.007 3 0.0018599 2 39461 20150910_Q1_SA_NiHu_Masterprac_group13_C 68.262 51.912 4967800 430970 0 1400900 466140 792230 1877500 7504 368 7400 33038;33039;33040;33041;33042;33043 21809;21810 21809 2 STPAAGQPPHLTSAQDQDTISELASCLQR Unmodified 3078.4676 0.4676404 1485 Q9H211 CDT1 DNA replication factor Cdt1 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 132.57 132.57 4 0.017149 1 85595 20150910_Q1_SA_NiHu_Masterprac_group13_B 28.039 13.309 12059000 0 0 0 12059000 0 0 7505 1485 7401 33044 21811 21811 1 STPGSGSGPAHGPDPAHGPASCS Unmodified 2086.8763 0.87627941 1612 Q9ULX9-2;Q9ULX9 MAFF Transcription factor MafF yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 61.351 56.057 3 1.3508E-09 3 41134 20150910_Q1_SA_NiHu_Masterprac_group10_C 77.08 69.328 15775000 4182500 644680 0 3852900 6069400 1025900 7506 1612 7402 33045;33046;33047;33048;33049 21812;21813;21814 21814 3 STPHRTPIITPNTK Unmodified 1561.8576 0.85763986 1533 Q9NQW6;Q9NQW6-2;H7C3S1 ANLN Actin-binding protein anillin yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 65.089 56.947 3 0.0045951 3 40712 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.53 36.47 41557000 4115800 10177000 11765000 6318800 9180600 0 7507 1533 7403 33050;33051;33052;33053;33054 21815;21816;21817 21816 3 STPKEETVNDPEEAGHR Unmodified 1894.8657 0.86569795 692 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 55.239 45.438 3 0.0036749 2 37730 20150910_Q1_SA_NiHu_Masterprac_group15_C 50.178 32.163 802800 276110 0 0 0 526690 0 7508 692 7404 33055;33056 21818;21819 21819 2 STPKEETVNDPEEAGHRSGSK Unmodified 2254.0462 0.046181509 692 O00567 NOP56 Nucleolar protein 56 yes yes 0 0 2 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 2 3 3 3 3 43.104 37.826 3;4;5 0.021287 4 31887 20150910_Q1_SA_NiHu_Masterprac_group15_C 38.379 30.095 52646000 2334300 3581600 10530000 13904000 15360000 6936700 7509 692 7405 33057;33058;33059;33060;33061;33062;33063;33064;33065;33066;33067;33068;33069;33070;33071 21820;21821;21822;21823 21823 3 STPVTSAVQIPEVK Unmodified 1454.7981 0.7980593 1403 Q96KR1;B5MEH6 ZFR Zinc finger RNA-binding protein yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 132.42 130.56 2 5.742E-13 4 85118 20150910_Q1_SA_NiHu_Masterprac_group10_B 104.9 80.391 78190000 0 17688000 0 13221000 0 47281000 7510 1403 7406 33072;33073;33074 21824;21825;21826;21827 21827 4 STPVTVVLPDTKGK Unmodified 1440.8188 0.81879474 92 B4DK30;Q15029 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 117.03 109.35 3 0.001842 3 74920 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.095 55.387 9462800 1954100 2747300 0 294760 2260500 2206300 7511 92 7407 33075;33076;33077;33078;33079 21828;21829;21830 21828 2 STQESLTAGGTDLK Unmodified 1406.6889 0.68890278 424 E9PE58;Q15345-3;Q15345;B5MD92 LRRC41 Leucine-rich repeat-containing protein 41 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 86.689 81.45 2 1.7362E-55 3 55881 20150910_Q1_SA_NiHu_Masterprac_group15_B 129.38 98.381 7429800 0 1781600 1361700 580530 0 3706000 7512 424 7408 33080;33081;33082;33083 21831;21832;21833 21831 3 STQNSFRAESSQTCHSEQGDK Unmodified 2383.0095 0.009478427 922 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 46.47 40.98 3 0.00044929 1 28328 20150910_Q1_SA_NiHu_Masterprac_group13_B 56.347 50.845 17218000 3324300 2056800 3616900 3088700 2515600 2615900 7513 922 7409 33084;33085;33086;33087;33088;33089 21834 21834 1 STQNSFRAESSQTCHSEQGDKK Unmodified 2511.1044 0.10444144 922 P46063 RECQL ATP-dependent DNA helicase Q1 yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 38.356 34.383 4 0.011756 1 23230 20150910_Q1_SA_NiHu_Masterprac_group13_B 37.993 34.461 8371000 1772000 0 2449200 1738000 0 2411800 7514 922 7410 33090;33091;33092;33093 21835 21835 1 STQPISSVGKPASVIK Unmodified 1597.9039 0.90392136 1255 Q7Z6E9;Q7Z6E9-2;Q7Z6E9-4 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 105.82 95.964 3 0.002458 2 64090 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.148 29.818 17180000 0 2695700 1839800 0 2030700 10613000 7515 1255 7411 33094;33095;33096;33097 21836;21837 21837 2 STQQDIYAGSVQPILR Unmodified 1774.9214 0.92136233 1115 Q14807;B7Z265;H3BRB3;H3BTH5 KIF22 Kinesin-like protein KIF22 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.93 132.32 2 1.5856E-37 1 85890 20150910_Q1_SA_NiHu_Masterprac_group10_B 115.58 83.969 22946000 0 22946000 0 0 0 0 7516 1115 7412 33098 21838 21838 1 STRHSANCDRLSESSASPQPK Unmodified 2314.072 0.072019104 15 A6NCU2;B7Z227;A6NHW8;Q8N5Y2-2;Q8N5Y2-3;Q8N5Y2 MSL3 Male-specific lethal 3 homolog yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 45.196 39.29 4 0.019416 1 27727 20150910_Q1_SA_NiHu_Masterprac_group15_B 35.436 35.436 6692000 635940 0 2057700 1361500 1006400 1630500 7517 15 7413 33099;33100;33101;33102;33103 21839 21839 1 STRIPGTDAQAQAEDMNVK Unmodified 2030.9691 0.96911716 1231 Q6PJG2;F6RU81 ELMSAN1 ELM2 and SANT domain-containing protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 106.63 97.334 3 0.00016979 5 64675 20150910_Q1_SA_NiHu_Masterprac_group10_B 81.807 64.069 25172000 2726700 4049300 2314700 2337200 6175100 7568600 7518 1231 7414 33104;33105;33106;33107;33108;33109;33110 21840;21841;21842;21843;21844 21843 4 STRLSGAAPAHSAADPWEK Unmodified 1950.9548 0.95478773 680 I3L476;Q9BSJ6-2;I3L1U3;I3L419;Q9BSJ6;I3L156 FAM64A Protein FAM64A yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 2 3 92.217 85.889 3;4 0.0053873 2 58157 20150910_Q1_SA_NiHu_Masterprac_group10_B 45.916 24.669 16114000 0 3871400 3589000 0 0 8653800 7519 680 7415 33111;33112;33113;33114;33115;33116;33117 21845;21846 21846 2 STRQTTITSHFAK Unmodified 1476.7685 0.76849051 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 62.684 55.791 3 0.0015585 6 46327 20150910_Q1_SA_NiHu_Masterprac_group13_C 88.224 59.01 26616000 2251300 4087100 4989000 1986000 5788100 7514800 7520 487 7416 33118;33119;33120;33121;33122;33123 21847;21848;21849;21850;21851;21852 21847 6 STRQTTITSHFAKGPAK Unmodified 1829.9748 0.97479489 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 1 62.055 56.34 4 9.5441E-08 6 40577 20150910_Q1_SA_NiHu_Masterprac_group10_B 91.616 68.127 16150000 4118000 3949800 5457200 201060 0 2424200 7521 487 7417 33124;33125;33126;33127;33128;33129 21853;21854;21855;21856;21857;21858 21856 6 STSEDSLVKQECIKEVVEK Unmodified 2207.0991 0.099128282 1634 Q9Y2M0-2;Q9Y2M0;H3BQ24 FAN1 Fanconi-associated nuclease 1 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 129.42 112.58 3 3.8025E-100 4 75150 20150910_Q1_SA_NiHu_Masterprac_group10_C 135.57 119.84 13394000 4630400 0 8763600 0 0 0 7522 1634 7418 33130;33131 21859;21860;21861;21862 21862 4 STSGEGFQFGK Unmodified 1143.5197 0.51965261 945;1251 P49792;E9PGT0;P0DJD0;P0DJD1;F8VYC4;Q99666;O14715;Q7Z3J3;B4DZH4 RANBP2;RGPD1;RGPD2;RGPD5;RGPD8;RGPD4 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8;RanBP2-like and GRIP domain-containing protein 4 no no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1 98.823 89.474 2 1.7548E-69 6 61424 20150910_Q1_SA_NiHu_Masterprac_group15_B 144.7 118.63 62458000 15820000 7955000 9484300 5212200 10735000 13251000 7523 945;1251 7419 33132;33133;33134;33135;33136;33137;33138;33139 21863;21864;21865;21866;21867;21868 21865 6 STSLASVSQLASK Unmodified 1277.6827 0.68269519 1560 Q9NXV6 CDKN2AIP CDKN2A-interacting protein yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 124.58 115.09 2 3.7619E-181 5 76399 20150910_Q1_SA_NiHu_Masterprac_group10_C 167.22 149.02 97972000 43963000 6940200 24054000 6901600 5284500 10828000 7524 1560 7420 33140;33141;33142;33143;33144;33145 21869;21870;21871;21872;21873 21873 5 STSQVAASLLASK Unmodified 1261.6878 0.68778057 1560 Q9NXV6 CDKN2AIP CDKN2A-interacting protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 127.57 118.09 2 7.626E-60 6 80362 20150910_Q1_SA_NiHu_Masterprac_group15_C 132.97 94.007 126330000 41183000 7917700 35744000 10208000 10093000 21181000 7525 1560 7421 33146;33147;33148;33149;33150;33151 21874;21875;21876;21877;21878;21879 21877 6 STSSFSCLSR Unmodified 1130.5026 0.50262234 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 86.111 78.348 2 0.0028315 7 53671 20150910_Q1_SA_NiHu_Masterprac_group13_B 96.113 66.346 271290000 24374000 34675000 52835000 32420000 40820000 86168000 + 7526 302 7422 33152;33153;33154;33155;33156;33157;33158 21880;21881;21882;21883;21884;21885;21886 21880 7 STSSFSCLSRHGGGGGGFGGGGFGSR Unmodified 2432.0676 0.067602428 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 122.23 112.76 3;4 3.9296E-51 9 73653 20150910_Q1_SA_NiHu_Masterprac_group10_B 102.29 92.14 77461000 4988800 7639100 41944000 13522000 3860500 5506400 + 7527 302 7423 33159;33160;33161;33162;33163;33164;33165;33166;33167;33168;33169;33170 21887;21888;21889;21890;21891;21892;21893;21894;21895 21894 8 STSSFSCLSRHGGGGGGFGGGGFGSRSLVGLGGTK Unmodified 3244.5432 0.54320538 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 131.98 131.98 4 4.7632E-17 1 84989 20150910_Q1_SA_NiHu_Masterprac_group13_B 54.241 37.404 27341000 0 0 0 27341000 0 0 + 7528 302 7424 33171 21896 21896 1 STSVTTTSSASVTTTSNASGRR Unmodified 2158.0462 0.046181509 834 P13646;CON__P13646-1 KRT13 Keratin, type I cytoskeletal 13 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 65.598 57.551 3 0.0020161 1 40538 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.514 35.817 3380600 0 0 0 0 2396100 984550 + 7529 834 7425 33172;33173 21897 21897 1 STTPGGTGIKPFLER Unmodified 1559.8308 0.83075641 1533 Q9NQW6;Q9NQW6-2 ANLN Actin-binding protein anillin yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 126.22 116.76 3 0.00056631 6 81749 20150910_Q1_SA_NiHu_Masterprac_group13_C 71.031 46.616 147740000 40380000 15400000 45907000 9106600 13345000 23600000 7530 1533 7426 33174;33175;33176;33177;33178;33179 21898;21899;21900;21901;21902;21903 21899 6 STTQANRMSVDAVEIETLRK Unmodified 2248.1481 0.14814416 90 P78347-2;P78347-4;P78347-3;B4DH52;P78347;Q86U51 GTF2I General transcription factor II-I yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 2 2 130.05 129.75 3;4 3.8729E-06 2 82920 20150910_Q1_SA_NiHu_Masterprac_group10_B 86.136 69.728 10386000 0 6586700 0 3799400 0 0 7531 90 7427 33180;33181;33182;33183 21904;21905 21905 2 STTSTIESFAAQEK Unmodified 1498.7151 0.71511753 766 O95232;B4DJ96;F5H1W9 LUC7L3 Luc7-like protein 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 129.29 124.33 2 0.00054782 1 84047 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.363 70.7 1187700 0 0 0 0 0 1187700 7532 766 7428 33184 21906 21906 1 STTTGHLIYK Unmodified 1119.5924 0.59242362 1006 Q5VTE0;P68104;Q6IQ15;F8W6I0;Q05639;A6PW80;Q5JR01;E7EPH7 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 1 2 1 2 1 65.214 56.531 2 5.1557E-05 6 37357 20150910_Q1_SA_NiHu_Masterprac_group10_C 108.43 48.367 680480000 114180000 99455000 125240000 59747000 117540000 164320000 7533 1006 7429 33185;33186;33187;33188;33189;33190;33191;33192;33193;33194 21907;21908;21909;21910;21911;21912 21911 6 STVASMMHRQETVECLRK Unmodified 2162.0395 0.039462109 612 H0Y6G2;Q8WU40;Q13555-10;Q5SWX3;Q13555-3;Q13555-5;Q13555-4;Q13555-7;Q13555-9;Q13555-2;Q13555-8;Q13555;Q13555-6 CAMK2G Calcium/calmodulin-dependent protein kinase type II subunit gamma yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 105.56 93.292 4 0.0038953 1 68038 20150910_Q1_SA_NiHu_Masterprac_group15_C 47.537 35.469 5926100 0 0 828020 0 2948000 2150100 7534 612 7430 33195;33196;33197 21913 21913 1 STVHEILCK Acetyl (Protein N-term) 1127.5645 0.56449431 626 H0YKS4;H0YMD0;H0YMU9;H0YN42;P07355;H0YKV8;H0YKL9;H0YKZ7;H0YLV6;H0YMT9;H0YKX9;H0YMM1;A6NMY6;P07355-2;H0YNB8;H0YMD9;H0YKN4;H0YMW4;H0YNP5 ANXA2;ANXA2P2 Annexin;Annexin A2;Putative annexin A2-like protein yes no 1 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 118.79 106.92 2 9.9915E-07 3 73268 20150910_Q1_SA_NiHu_Masterprac_group15_B 113.62 81.207 10182000 1740300 0 0 0 1875400 6566400 7535 626 7431 33198;33199;33200 21914;21915;21916 21915 3 STVSEQADKENNLENEK Unmodified 1933.8865 0.88649297 1175 Q562F6-2;Q562F6 SGOL2 Shugoshin-like 2 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 64.092 56.598 3 0.003144 1 39589 20150910_Q1_SA_NiHu_Masterprac_group13_B 66.977 55.776 4205600 0 0 3560800 644810 0 0 7536 1175 7432 33201;33202 21917 21917 1 STVVDNDADFQGTK Unmodified 1495.6791 0.67906638 1290 Q8IYH5-2;Q8IYH5;Q8IYH5-4 ZZZ3 ZZ-type zinc finger-containing protein 3 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 88.356 80.507 2 5.327E-20 7 61723 20150910_Q1_SA_NiHu_Masterprac_group13_C 109.1 91.382 13780000 1065100 2225100 1799400 483450 1371400 6835800 7537 1290 7433 33203;33204;33205;33206;33207;33208;33209 21918;21919;21920;21921;21922;21923;21924 21920 7 STVVEGGEVRFNGK Unmodified 1477.7525 0.75250609 972 P56177;F8VXJ2 DLX1 Homeobox protein DLX-1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 88.739 85.404 3 0.012394 1 58521 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.356 28.348 2187000 192430 628200 0 205360 0 1161000 7538 972 7434 33210;33211;33212;33213 21925 21925 1 STVVEGGEVRFNGKGK Unmodified 1662.8689 0.86893283 972 P56177;F8VXJ2 DLX1 Homeobox protein DLX-1 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 77.508 69.98 3 0.00089866 4 48506 20150910_Q1_SA_NiHu_Masterprac_group13_B 83.877 59.18 15796000 2416500 2298000 3778900 1733200 1920600 3648500 7539 972 7435 33214;33215;33216;33217;33218;33219 21926;21927;21928;21929 21926 4 STVVPVPYEK Unmodified 1117.6019 0.60192568 90 P78347-2;P78347-4;P78347-3;B4DH52;P78347;Q86U51 GTF2I General transcription factor II-I yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 116.17 107 2 0.010222 3 75720 20150910_Q1_SA_NiHu_Masterprac_group15_C 73.885 73.885 27211000 4762000 8703800 5828000 338210 3158800 4420100 7540 90 7436 33220;33221;33222;33223;33224;33225 21930;21931;21932 21931 3 STVYPIFSASSVNSK Unmodified 1585.7988 0.79878758 1176 Q56NI9;H0YB88 ESCO2 N-acetyltransferase ESCO2 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 133.46 133.46 2 0.0022036 1 86548 20150910_Q1_SA_NiHu_Masterprac_group13_B 66.826 39.497 8554300 0 0 0 8554300 0 0 7541 1176 7437 33226 21933 21933 1 STYEQVDLIGK Unmodified 1251.6347 0.63468237 1534 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 122.69 115.14 2 1.6311E-20 3 75270 20150910_Q1_SA_NiHu_Masterprac_group13_B 123.67 101.34 23324000 0 0 10614000 5140100 0 7570600 7542 1534 7438 33227;33228;33229 21934;21935;21936 21934 3 STYEQVDLIGKK Unmodified 1379.7296 0.72964538 1534 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 107.2 97.673 3 4.2653E-12 2 70442 20150910_Q1_SA_NiHu_Masterprac_group15_C 107.34 107.34 9042800 0 0 1455800 2031500 3759000 1796500 7543 1534 7439 33230;33231;33232;33233 21937;21938 21938 2 SVAETPVHKQISK Unmodified 1422.7831 0.78307794 1249 Q7Z2Z1-2;Q7Z2Z1 TICRR Treslin yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 46.71 41.335 3 0.0088302 2 28793 20150910_Q1_SA_NiHu_Masterprac_group13_B 56.956 10.893 4540900 0 837970 1836600 713530 395240 757550 7544 1249 7440 33234;33235;33236;33237;33238 21939;21940 21939 2 SVAFAAPR Acetyl (Protein N-term) 859.4552 0.45520186 1140 Q15532-2;Q15532 SS18 Protein SSXT yes no 1 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 120.53 118.15 2 0.015273 1 80260 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.501 39.031 2923200 0 0 0 538090 0 2385100 7545 1140 7441 33239;33240 21941 21941 1 SVAHGQAPEMPLVK Unmodified 1462.7602 0.76023401 1157 Q1ED39;H3BMC9 KNOP1 Lysine-rich nucleolar protein 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 108.31 99.479 3 0.00092241 4 73175 20150910_Q1_SA_NiHu_Masterprac_group13_C 72.898 54.321 21648000 2540700 2542100 2123200 1262300 6263700 6916200 7546 1157 7442 33241;33242;33243;33244;33245;33246 21942;21943;21944;21945 21942 4 SVAHGQAPEMPLVKK Unmodified 1590.8552 0.85519702 1157 Q1ED39;H3BMC9 KNOP1 Lysine-rich nucleolar protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 89.66 82.22 3 0.026101 1 55851 20150910_Q1_SA_NiHu_Masterprac_group10_B 35.711 16.98 8530100 0 830320 1242000 737740 1930700 3789300 7547 1157 7443 33247;33248;33249;33250;33251 21946 21946 1 SVDFHFRTDER Unmodified 1407.6531 0.6531264 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 101.88 93.703 3 0.017384 3 64078 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.785 22.244 70522000 4433000 9124900 8389700 4405700 14729000 29439000 7548 1611 7444 33252;33253;33254;33255;33256;33257 21947;21948;21949 21948 3 SVEDDKEGHLVCR Unmodified 1542.7097 0.709655 944 P49761-1;P49761;H3BUL5;H3BVF8;H3BQG1;P49761-3;G5E959 CLK3 Dual specificity protein kinase CLK3 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 58.103 50.934 3 0.015308 1 41837 20150910_Q1_SA_NiHu_Masterprac_group15_C 51.612 32.325 3205600 0 0 887980 429890 663620 1224100 7549 944 7445 33258;33259;33260;33261 21950 21950 1 SVEDRFDQQK Unmodified 1250.5891 0.58912916 840 P15924;P15924-2;H7BYR0 DSP Desmoplakin yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 54.343 53.288 2 0.022039 1 37994 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.261 47.506 1753600 0 0 0 0 0 1753600 7550 840 7446 33262 21951 21951 1 SVEDRFDQQKNDYDQLQK Unmodified 2255.0455 0.045453228 840 P15924;P15924-2;H7BYR0 DSP Desmoplakin yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 106.4 97.499 3 0.016573 1 71903 20150910_Q1_SA_NiHu_Masterprac_group13_C 46.543 37.927 1085700 0 0 742130 343520 0 0 7551 840 7447 33263;33264 21952 21952 1 SVEESYITSEHCYQKPR Unmodified 2111.9582 0.95821812 1454 Q9BVI0 PHF20 PHD finger protein 20 yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 2 2 1 1 1 94.153 85.76 3 0.0017667 2 63569 20150910_Q1_SA_NiHu_Masterprac_group15_C 59.884 48.104 6395500 1411300 1603200 574210 0 1362700 1444200 7552 1454 7448 33265;33266;33267;33268;33269;33270;33271 21953;21954 21953 2 SVELDLNQAHMEETPK Unmodified 1839.8673 0.86727785 507 F5H2R4;F5H0Y0;F5H689;Q14680;B7Z6Y0;B7Z7Q1;A6P3A8;A6P3A7 MELK Maternal embryonic leucine zipper kinase yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 128.48 123.52 3 0.00024377 1 83501 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.531 30.915 1400000 0 0 0 0 0 1400000 7553 507 7449 33272 21955 21955 1 SVELNPTQK Unmodified 1014.5346 0.53457439 945;1251 P49792;E9PGT0;Q99666;O14715;Q99666-2;F8W705;C9J1W9;C9JF75;C9J6W1;Q7Z3J3-2;C9J149;Q7Z3J3 RANBP2;RGPD5;RGPD8;RGPD6;RGPD4 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8;RanBP2-like and GRIP domain-containing protein 4 no no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 66.911 61.376 2 0.012404 3 42954 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.525 25.267 12822000 854490 1009400 0 925930 3434800 6597200 7554 945;1251 7450 33273;33274;33275;33276;33277 21956;21957;21958 21956 3 SVENAVCVLR Unmodified 1145.5863 0.58629239 1650 Q9Y446 PKP3 Plakophilin-3 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 111.23 109.62 2 2.2826E-09 1 72039 20150910_Q1_SA_NiHu_Masterprac_group10_B 117.52 54.446 2754800 0 2754800 0 0 0 0 7555 1650 7451 33278 21959 21959 1 SVEPQDAGPLER Unmodified 1296.631 0.63099397 376 E7ESW4;Q9NZT2-2;Q9NZT2;Q4VXW4 OGFR Opioid growth factor receptor yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 85.113 83.114 2 0.0018096 1 56835 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.69 47.602 2278900 0 908360 0 0 0 1370500 7556 376 7452 33279;33280 21960 21960 1 SVESNIEDK Unmodified 1019.4771 0.47711909 426 E9PFZ0;P38398-4;P38398-2;P38398;E9PFC7;E7EP70;F8W8H7;E7EMP0;E9PH68;E7EWN5;Q3B891;C9IZW4 BRCA1 Breast cancer type 1 susceptibility protein yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 52.855 50.122 2 0.036116 1 35881 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.765 21.413 3219500 634760 940230 0 327770 0 1316800 7557 426 7453 33281;33282;33283;33284 21961 21961 1 SVEYEGDLK Unmodified 1038.487 0.4869555 1063 Q12888;Q12888-2;A6NNK5;F8VY86;C9JXV0;H7C3N7 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 79.115 71.755 2 0.018678 2 49805 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.552 48.559 27229000 0 3899800 6013600 2632600 3832200 10851000 7558 1063 7454 33285;33286;33287;33288;33289 21962;21963 21962 2 SVGFIGAGQLAFALAK Acetyl (Protein N-term) 1590.877 0.87697832 890 P32322;E2QRB3;A6NFM2;B4DMU0 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial;Pyrroline-5-carboxylate reductase yes no 1 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 134.2 121.16 2 5.1104E-118 4 80337 20150910_Q1_SA_NiHu_Masterprac_group10_C 142.95 142.95 510070000 319530000 92241000 94229000 0 4073300 0 7559 890 7455 33290;33291;33292;33293 21964;21965;21966;21967 21967 4 SVGGACVLVA Unmodified 931.4797 0.47970205 447 E9PJD9;P46776;E9PLX7 RPL27A 60S ribosomal protein L27a yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 127.65 118.08 1 0.0051242 3 81866 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.76 42.774 4723100 2365300 0 0 380830 1454400 522570 7560 447 7456 33294;33295;33296;33297 21968;21969;21970 21968 3 SVGGSGGGSFGDNLVTR Unmodified 1565.7434 0.74339797 783 P02545;P02545-3;D6RAQ3;E7EUI9 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 119.34 110.16 2 6.559E-32 11 72061 20150910_Q1_SA_NiHu_Masterprac_group10_B 109.87 83.89 166450000 20253000 22337000 19127000 9138000 12825000 82771000 7561 783 7457 33298;33299;33300;33301;33302;33303;33304;33305;33306;33307 21971;21972;21973;21974;21975;21976;21977;21978;21979;21980;21981 21980 11 SVGPDFGK Unmodified 805.39702 0.39701828 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 66.731 66.154 2 0.02567 1 45947 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.92 56.144 5716000 0 0 0 1247800 0 4468200 7562 1012 7458 33308;33309 21982 21982 1 SVGPDFGKK Unmodified 933.49198 0.4919813 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 57.181 49.285 2 0.03179 1 40404 20150910_Q1_SA_NiHu_Masterprac_group13_C 92.051 56.695 2268700 0 851630 1417000 0 0 0 7563 1012 7459 33310;33311 21983 21983 1 SVIELQQYAK Unmodified 1177.6343 0.63428844 1346 Q8WYQ5-3;Q8WYQ5 DGCR8 Microprocessor complex subunit DGCR8 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 2 125.29 122.65 2 7.036E-09 2 83304 20150910_Q1_SA_NiHu_Masterprac_group15_B 114.4 77.816 7016400 0 1776400 0 351410 0 4888500 7564 1346 7460 33312;33313;33314;33315 21984;21985 21985 2 SVIYHALSQK Unmodified 1144.6241 0.6240581 773 O95707 POP4 Ribonuclease P protein subunit p29 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1 83.355 75.635 2 6.3392E-09 5 57566 20150910_Q1_SA_NiHu_Masterprac_group15_C 126.03 85.41 18932000 2067700 2092000 2407000 2056500 3784100 6524900 7565 773 7461 33316;33317;33318;33319;33320;33321;33322 21986;21987;21988;21989;21990 21989 5 SVKEDSNLTLQEK Unmodified 1489.7624 0.76240208 929 P46940;H0YLE8 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 2 2 1 2 73.242 66.479 2;3 2.0926E-23 9 46406 20150910_Q1_SA_NiHu_Masterprac_group13_B 113.37 113.37 37856000 8010000 5284400 10655000 5561900 2248400 6096300 7566 929 7462 33323;33324;33325;33326;33327;33328;33329;33330;33331;33332;33333;33334 21991;21992;21993;21994;21995;21996;21997;21998;21999 21991 9 SVKKPAPPPAPPQATK Unmodified 1612.9301 0.93007653 372 Q86VM9;E7ERS3;Q86VM9-2;H7BXJ7;H3BRN6 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 60.804 53.021 3 0.019097 1 43173 20150910_Q1_SA_NiHu_Masterprac_group15_C 47.855 27.748 4145000 0 153220 1516600 260690 2214500 0 7567 372 7463 33335;33336;33337;33338 22000 22000 1 SVLDHQNNEGASCDWK Unmodified 1858.7904 0.79042452 1368 Q96AY2;Q96AY2-2 EME1 Crossover junction endonuclease EME1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 88.591 85.257 3 0.0021325 1 58359 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.649 54.517 3090700 361180 828120 0 233720 0 1667600 7568 1368 7464 33339;33340;33341;33342 22001 22001 1 SVLEPQAVPDPEEGSSAPR Unmodified 1963.9487 0.9486993 1263 Q86UT8 CCDC84 Coiled-coil domain-containing protein 84 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 129.71 118.43 2 4.2517E-17 5 82061 20150910_Q1_SA_NiHu_Masterprac_group13_C 96.391 78.07 44057000 8934800 0 12331000 782880 3016100 18992000 7569 1263 7465 33343;33344;33345;33346;33347 22002;22003;22004;22005;22006 22002 5 SVLEPQAVPDPEEGSSAPRSWK Unmodified 2365.155 0.15500368 1263 Q86UT8 CCDC84 Coiled-coil domain-containing protein 84 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 131.77 123.62 3 1.1188E-05 2 77991 20150910_Q1_SA_NiHu_Masterprac_group10_C 60.561 44.9 17798000 3763200 14035000 0 0 0 0 7570 1263 7466 33348;33349 22007;22008 22008 2 SVLMERLK Unmodified 974.55829 0.55828672 1097;1137 Q14151;A8MXT5;C9JPX0;B4DU53;F5GXS4;Q15424;F5H1L1;F5H0H3;B7Z959 SAFB2;SAFB Scaffold attachment factor B2;Scaffold attachment factor B1 no no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 85.462 85.462 2 0.040186 1 58086 20150910_Q1_SA_NiHu_Masterprac_group13_B 84.743 35.646 1080600 0 0 0 1080600 0 0 7571 1097;1137 7467 33350 22009 22009 1 SVLNTQPEQTNAGEVASSLSSTEIRR Unmodified 2773.3842 0.38422834 210 Q9BZ95-4;C9JY66;Q9BZ95-2;B7ZL11;Q9BZ95;Q9BZ95-3 WHSC1L1 Histone-lysine N-methyltransferase NSD3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 132.61 127.65 3 3.1588E-21 1 87566 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.395 63.401 15180000 0 0 0 0 0 15180000 7572 210 7468 33351 22010 22010 1 SVLTDPAKLKK Unmodified 1198.7285 0.72852317 516 Q9Y4C1;F5H4E6;F5H070;F8WE62 KDM3A Lysine-specific demethylase 3A yes no 0 0 2 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 77.116 69.756 3 0.0073869 2 53946 20150910_Q1_SA_NiHu_Masterprac_group15_C 87.789 61.039 5848200 0 1095600 1606600 599590 1006700 1539700 7573 516 7469 33352;33353;33354;33355;33356 22011;22012 22011 2 SVNGSVAEEAPCK Unmodified 1346.6136 0.61362935 1032 Q02040 AKAP17A A-kinase anchor protein 17A yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 60.211 59.056 2 0.026604 1 41645 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.314 37.718 0 0 0 0 0 0 0 7574 1032 7470 33357 22013 22013 1 SVNYAAGLSPYADKGK Acetyl (Protein N-term) 1681.8312 0.83115034 1306 Q8N6T7-4;Q8N6T7-2;Q8N6T7 SIRT6 NAD-dependent protein deacetylase sirtuin-6 yes no 1 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 132.27 122.1 2 1.0401E-163 5 81402 20150910_Q1_SA_NiHu_Masterprac_group15_C 157.83 127.66 65046000 0 0 11535000 13337000 13977000 26197000 7575 1306 7471 33358;33359;33360;33361;33362 22014;22015;22016;22017;22018 22017 5 SVPADLSRPK Unmodified 1068.5928 0.59275797 388 E7EVA0;P27816-6;P27816;P27816-2;P27816-4;E9PGM5;P27816-5;B9ZVR1;H0Y2V1;B4DSQ1;H7C4C5;B5MEG9 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 61.008 57.063 2 0.033862 1 40351 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.672 35.796 7474000 3694100 1833900 0 0 0 1946000 7576 388 7472 33363;33364;33365 22019 22019 1 SVPGTTSSPLVGDISPK Unmodified 1640.8621 0.86211612 149 B4DZR9;Q9UQR0;B4DRC2;H0Y6S1;Q9UQR0-2 SCML2 Sex comb on midleg-like protein 2 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 132.37 122.87 2 1.0973E-21 5 84634 20150910_Q1_SA_NiHu_Masterprac_group10_B 105 70.999 157900000 41300000 26470000 11522000 16914000 14863000 46827000 7577 149 7473 33366;33367;33368;33369;33370;33371 22020;22021;22022;22023;22024 22023 5 SVPGVCGASQTHQKPQNGEK Unmodified 2108.0069 0.006899652 1635 Q9Y2R4;F5H5G9;F5H0R7 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 3 2 2 2 2 2 49.397 43.585 3;4 0.00011662 6 31063 20150910_Q1_SA_NiHu_Masterprac_group13_B 72.207 57.278 110640000 17886000 18953000 17955000 12433000 17286000 26131000 7578 1635 7474 33372;33373;33374;33375;33376;33377;33378;33379;33380;33381;33382;33383;33384 22025;22026;22027;22028;22029;22030 22026 6 SVPTTQCLDNSK Unmodified 1348.6293 0.62927941 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 72.373 65.029 2 2.7076E-07 4 47220 20150910_Q1_SA_NiHu_Masterprac_group10_C 103.43 81.354 92377000 10444000 17085000 15086000 6892400 11138000 31733000 7579 919 7475 33385;33386;33387;33388;33389;33390 22031;22032;22033;22034 22034 3 SVPTTQCLDNSKK Unmodified 1476.7242 0.72424243 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 60.709 51.595 3 0.0011552 4 37776 20150910_Q1_SA_NiHu_Masterprac_group10_B 67.952 53.506 4707300 984330 1510500 1073600 0 1138800 0 7580 919 7476 33391;33392;33393;33394;33395 22035;22036;22037;22038 22036 3 SVPVTKPVPVTKPITVTK Unmodified 1890.1554 0.15538502 1402 Q96KM6 ZNF512B Zinc finger protein 512B yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 108.38 100.86 3;4 2.4457E-14 10 73875 20150910_Q1_SA_NiHu_Masterprac_group13_C 99.915 85.07 138670000 11681000 22474000 11555000 20345000 12818000 59795000 7581 1402 7477 33396;33397;33398;33399;33400;33401;33402;33403;33404;33405 22039;22040;22041;22042;22043;22044;22045;22046;22047;22048 22042 10 SVQNSHFKEPLVSDEK Unmodified 1842.9112 0.91119158 891 P33981-2;P33981 TTK Dual specificity protein kinase TTK yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 2 2 1 2 86.743 80.248 3;4 0.00072391 5 54807 20150910_Q1_SA_NiHu_Masterprac_group10_B 81.651 66.458 42084000 0 10730000 6715200 4393400 2375200 17870000 7582 891 7478 33406;33407;33408;33409;33410;33411;33412;33413;33414 22049;22050;22051;22052;22053 22052 5 SVQPTSEERIPK Unmodified 1369.7201 0.72014333 1593 Q9UHD8-3;Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;F5GWR9;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 72.863 62.035 3 0.0057944 3 50258 20150910_Q1_SA_NiHu_Masterprac_group13_C 63.662 33.099 10719000 0 0 4167100 0 3019500 3532500 7583 1593 7479 33415;33416;33417 22054;22055;22056 22054 3 SVREECIPMK Unmodified 1247.6002 0.60022789 779 O96028-5;O96028-3;O96028;O96028-6 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 75.328 67.867 3 0.021714 2 48517 20150910_Q1_SA_NiHu_Masterprac_group10_C 60.398 22.842 12441000 1313800 1182400 2696700 1075500 1320400 4852700 7584 779 7480 33418;33419;33420;33421;33422;33423 22057;22058 22058 2 SVSIQEEQSAPSSEK Unmodified 1604.753 0.7529596 659 Q86XZ4;H7BYM7;F8VS10 SPATS2 Spermatogenesis-associated serine-rich protein 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 72.636 65.174 2 2.8367E-05 6 50808 20150910_Q1_SA_NiHu_Masterprac_group15_C 89.136 65.501 11932000 1522600 2235800 2065000 818920 1587400 3702000 7585 659 7481 33424;33425;33426;33427;33428;33429;33430 22059;22060;22061;22062;22063;22064 22062 6 SVSLTGAPESVQK Unmodified 1301.6827 0.68269519 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 97.179 89.578 2 2.1711E-15 6 60587 20150910_Q1_SA_NiHu_Masterprac_group10_B 109.15 50.973 217030000 0 42991000 24674000 13092000 38803000 97467000 7586 1366 7482 33431;33432;33433;33434;33435;33436 22065;22066;22067;22068;22069;22070 22069 6 SVSLTGAPESVQKAK Unmodified 1500.8148 0.814772 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 89.348 81.636 2;3 6.1845E-09 10 62663 20150910_Q1_SA_NiHu_Masterprac_group13_C 94.09 68.107 251560000 22812000 59198000 34400000 21117000 42187000 71851000 7587 1366 7483 33437;33438;33439;33440;33441;33442;33443;33444;33445;33446;33447;33448 22071;22072;22073;22074;22075;22076;22077;22078;22079;22080 22074 7 SVSMLSLNTPNSNRK Unmodified 1646.841 0.84100352 598 Q9H8V3-2;Q9H8V3;G5E9L8;Q9H8V3-3;H7C3G1 ECT2 Protein ECT2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 113.77 105.77 3 0.0060596 1 69895 20150910_Q1_SA_NiHu_Masterprac_group10_B 46.318 24.431 1351000 268720 1082200 0 0 0 0 7588 598 7484 33449;33450 22081 22081 1 SVSPCSNVESR Unmodified 1220.5455 0.54554978 1623 Q9UQ35;F5GWZ7;Q9UQ35-2;I3L2L6;I3L182;Q9UQ39;I3L4D8 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 50.533 47.056 2 0.0054001 1 33511 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.29 42.987 3345500 783580 530430 0 0 0 2031500 7589 1623 7485 33451;33452;33453 22082 22082 1 SVSSPTSSNTPTPTK Unmodified 1489.726 0.72601657 48 Q5M775-5;Q5M775-3;Q5M775-2;Q5M775-4;A8MV89;Q5M775 SPECC1 Cytospin-B yes no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 59.447 52.855 2 0.00057715 4 39758 20150910_Q1_SA_NiHu_Masterprac_group10_C 82.529 34.817 6541500 753260 964400 1050100 986130 1210900 1576700 7590 48 7486 33454;33455;33456;33457;33458;33459 22083;22084;22085;22086 22086 3 SVTEEDLCHHMK Acetyl (Protein N-term) 1526.6494 0.64936293 1332 Q8NI77 KIF18A Kinesin-like protein KIF18A yes yes 1 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 2 103.44 92.782 2;3 0.00055584 3 67776 20150910_Q1_SA_NiHu_Masterprac_group15_C 73.9 53.794 9229000 2636800 1162500 1681900 2016300 1731500 0 7591 1332 7487 33460;33461;33462;33463;33464;33465 22087;22088;22089 22087 3 SVTEQGAELSNEER Unmodified 1547.7063 0.70634376 338 E5RGE1;E5RIR4;E9PD24;E7EVZ2;E7ESK7;P63104;E7EX29 YWHAZ 14-3-3 protein zeta/delta yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 77.213 70.478 2 0.0025709 3 49226 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.185 45.614 2136000 0 519230 0 0 1085100 531730 7592 338 7488 33466;33467;33468 22090;22091;22092 22092 3 SVTVPEAENPR Unmodified 1197.599 0.59896556 97 B4DLG2;O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 81.02 74.318 2 0.0024929 3 51489 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.184 59.756 2493800 0 967590 0 0 709610 816650 7593 97 7489 33469;33470;33471 22093;22094;22095 22093 3 SVVANFIVK Unmodified 975.57532 0.57531699 1159 Q29RF7;H0Y9L6 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 132.73 130.87 2 0.015329 3 88176 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.064 54.319 76801000 0 25032000 0 19744000 0 32026000 7594 1159 7490 33472;33473;33474 22096;22097;22098 22097 3 SVVAPPGAPK Unmodified 921.52837 0.5283668 642 H3BR35;P15170;P15170-2;H3BSV8 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 75.927 68.628 2 0.033269 1 53166 20150910_Q1_SA_NiHu_Masterprac_group15_C 56.013 26.637 40715000 0 6160900 8281000 5252000 7466000 13556000 7595 642 7491 33475;33476;33477;33478;33479 22099 22099 1 SVVTVAVKGNK Unmodified 1100.6554 0.65535823 1118 Q14966-3;Q14966;Q14966-4 ZNF638 Zinc finger protein 638 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 64.051 57.091 2 0.0070997 3 46471 20150910_Q1_SA_NiHu_Masterprac_group13_C 86.014 55.622 10779000 1194600 2214300 1709000 945740 2126700 2588500 7596 1118 7492 33480;33481;33482;33483;33484;33485 22100;22101;22102 22100 3 SVYFKPSLTPSGEFRK Unmodified 1841.9676 0.96758424 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 2 130.51 121.01 3;4 1.1766E-37 10 80032 20150910_Q1_SA_NiHu_Masterprac_group15_C 118.2 94.566 115450000 22357000 15031000 12843000 8225800 14031000 42961000 7597 531 7493 33486;33487;33488;33489;33490;33491;33492;33493;33494;33495;33496;33497;33498 22103;22104;22105;22106;22107;22108;22109;22110;22111;22112 22108 10 SVYHLEDIVR Unmodified 1229.6404 0.64043645 1122 Q14CA3;Q14669;Q14CF1;H7C2Y1 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 130.91 125.95 3 0.0071008 1 85712 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.029 61.251 6636900 0 0 0 0 0 6636900 7598 1122 7494 33499 22113 22113 1 SVYLGTGCGK Unmodified 1040.4961 0.4960804 1560 Q9NXV6 CDKN2AIP CDKN2A-interacting protein yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 64.351 62.963 2 0.017612 1 43981 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.627 37.802 4817000 0 1587300 0 1022900 0 2206800 7599 1560 7495 33500;33501;33502 22114 22114 1 SWADVVK Unmodified 803.41775 0.41775372 919;920 P46013;F5H4V4;P46013-2;E7EN66 MKI67 Antigen KI-67 no no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 110.91 102.04 1 0.039404 1 67784 20150910_Q1_SA_NiHu_Masterprac_group10_B 46.426 9.7248 12479000 1336600 1279200 1776400 1532300 1097300 5456800 7600 919;920 7496 33503;33504;33505;33506;33507;33508 22115 22115 1 SWEEQMIEVGRK Unmodified 1490.7188 0.71876312 1019 Q00059;A8MRB2 TFAM Transcription factor A, mitochondrial yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 1 132.02 125.48 2;3 1.8062E-12 6 78521 20150910_Q1_SA_NiHu_Masterprac_group10_C 110.64 74.96 84817000 26689000 8924900 20598000 17000000 0 11606000 7601 1019 7497 33509;33510;33511;33512;33513;33514 22116;22117;22118;22119;22120;22121 22121 5 SWHPEEFNCAHCK Unmodified 1700.6824 0.68239439 405 H0Y8Y3;F5H7Y0;E9PBF5;Q96HC4-4;Q96HC4;D6RB78 PDLIM5 PDZ and LIM domain protein 5 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 86.512 80.044 3 0.021571 1 54823 20150910_Q1_SA_NiHu_Masterprac_group13_B 46.063 37.755 2372400 0 672400 1003900 696140 0 0 7602 405 7498 33515;33516;33517 22122 22122 1 SWPQESNLNRK Unmodified 1357.6739 0.67386184 917 P42695;E9PKK4;G3V1A9 NCAPD3 Condensin-2 complex subunit D3 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 79.09 71.579 3 0.0026268 3 49644 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.841 53.526 7950600 436810 1800300 1224900 1112000 880640 2496000 7603 917 7499 33518;33519;33520;33521;33522;33523 22123;22124;22125 22123 3 SWVGFSGGQHHTVCMDSEGK Unmodified 2204.9368 0.93677118 271 C9JW69;P18754;P18754-2 RCC1 Regulator of chromosome condensation yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 115.77 106.63 3;4 9.7242E-27 8 70173 20150910_Q1_SA_NiHu_Masterprac_group10_B 101.53 82.042 45639000 4566600 4599400 7315300 6870300 12165000 10122000 7604 271 7500 33524;33525;33526;33527;33528;33529;33530;33531;33532;33533;33534;33535 22126;22127;22128;22129;22130;22131;22132;22133 22132 8 SYAASASAAPAEPR Unmodified 1347.6419 0.64189301 857 P20719 HOXA5 Homeobox protein Hox-A5 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 68.17 66.088 2 0.0014962 3 46336 20150910_Q1_SA_NiHu_Masterprac_group10_B 68.972 53.976 3395700 0 1067000 0 0 0 2328700 7605 857 7501 33536;33537;33538 22134;22135;22136 22136 3 SYAPYHHHQPAAPK Unmodified 1602.7692 0.76915921 1434 Q99958 FOXC2 Forkhead box protein C2 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 46.436 38.581 4 0.035916 1 27109 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.3 28.731 2216100 0 0 653040 0 417710 1145300 7606 1434 7502 33539;33540;33541 22137 22137 1 SYCAEIAHNVSSK Unmodified 1464.6667 0.66672755 312 D3YTB1;P62910;F8W727 RPL32 60S ribosomal protein L32 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 2 2 3 2 87.354 79.132 2;3 0.012066 3 59442 20150910_Q1_SA_NiHu_Masterprac_group15_C 51.939 42.943 11148000 1243600 1128200 0 0 4858800 3917800 7607 312 7503 33542;33543;33544;33545;33546;33547;33548;33549;33550 22138;22139;22140 22140 2 SYDDAESLKTLR Unmodified 1396.6834 0.68342347 1035 Q02880-2;Q02880;E9PCY5 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 96.233 93.876 3 0.0088439 1 64133 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.301 40.459 2247500 0 0 0 0 0 2247500 7608 1035 7504 33551 22141 22141 1 SYDTDQGRVFVK Unmodified 1413.6888 0.6888432 1511 Q9HA64;I3L1I7;I3L139;I3L407;I3L3W5 FN3KRP Ketosamine-3-kinase yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 2 2 1 2 88.254 81.931 2;3 0.013828 3 56207 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.043 42.717 15212000 380860 6007600 2560300 1031500 0 5232000 7609 1511 7505 33552;33553;33554;33555;33556;33557;33558;33559 22142;22143;22144 22142 3 SYDYHQNWGR Acetyl (Protein N-term) 1366.5691 0.56906242 502 Q9H2U1-3;Q9H2U1-2;F5GZS0;Q9H2U1 DHX36 Probable ATP-dependent RNA helicase DHX36 yes no 1 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 110.24 100.26 2 0.004994 1 68316 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.566 69.565 5044600 0 774330 645190 0 965470 2659600 7610 502 7506 33560;33561;33562;33563 22145 22145 1 SYENELDPLKNR Unmodified 1476.7209 0.72087161 1362 Q92878-2;Q92878;Q92878-3;E7EN38;E7ESD9 RAD50 DNA repair protein RAD50 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 114.14 110.08 3 0.00023844 1 75295 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.713 68.086 0 0 0 0 0 0 0 7611 1362 7507 33564 22146 22146 1 SYGGYEVVGGSSDSYLVPGMTYSKGK Oxidation (M) 2703.2374 0.23741268 601 Q2L6G8;Q15517;G8JLG2 CDSN Corneodesmosin yes no 0 1 1 By matching By matching By matching By MS/MS By matching By matching 1 132.31 132.31 3 1.6959E-20 1 85315 20150910_Q1_SA_NiHu_Masterprac_group13_B 88.239 75.109 25784000 0 0 0 25784000 0 0 7612 601 7508 33565 22147 22147 64 1 SYGNFYKVPR Unmodified 1229.6193 0.61930707 1276 Q8IV48 ERI1 3'-5' exoribonuclease 1 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 103.94 97.221 3 0.016878 3 64712 20150910_Q1_SA_NiHu_Masterprac_group13_B 66.568 54.299 15315000 1818100 2658000 0 1255100 3556900 6027400 7613 1276 7509 33566;33567;33568;33569;33570 22148;22149;22150 22148 3 SYGRPPPDVEGMTSLK Acetyl (Protein N-term) 1774.856 0.85598488 1026 Q8NAK9;Q01130;F5GYB8;H0YG49 SRSF2;SFRS2 Serine/arginine-rich splicing factor 2 yes no 1 0 1 By matching By matching By matching By MS/MS By matching By matching 1 132.45 132.45 2 1.031E-97 1 85459 20150910_Q1_SA_NiHu_Masterprac_group13_B 140.46 95.493 4534300 0 0 0 4534300 0 0 7614 1026 7510 33571 22151 22151 1 SYIQGGRPFTK Unmodified 1252.6564 0.65642086 212 B7ZM82;B3KVH1;O95785;O95785-2 WIZ Protein Wiz yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 2 2 2 86.448 78.877 2;3 0.0052125 5 53930 20150910_Q1_SA_NiHu_Masterprac_group10_B 73.666 43.054 23287000 1140200 2567800 2128200 2487400 7639900 7323800 7615 212 7511 33572;33573;33574;33575;33576;33577;33578;33579;33580;33581;33582 22152;22153;22154;22155;22156 22156 5 SYISEETR Unmodified 983.45599 0.45598972 1159 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 58.121 56.799 2 0.012377 1 40134 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.601 52.873 5909400 0 1767800 0 552690 0 3588800 7616 1159 7512 33583;33584;33585 22157 22157 1 SYLSGGAGAAGGGGADPGNK Unmodified 1662.7598 0.75977631 624 H0YJU4;H0YJV7;P25490 YY1 Transcriptional repressor protein YY1 yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 79.819 72.291 2 0.00016186 2 55432 20150910_Q1_SA_NiHu_Masterprac_group15_C 74.776 55.532 5611400 747200 871350 638550 1068700 1143300 1142300 7617 624 7513 33586;33587;33588;33589;33590;33591 22158;22159 22159 2 SYNCCSGNFSSR Acetyl (Protein N-term) 1479.5507 0.55071152 1173 Q52LG2 KRTAP13-2 Keratin-associated protein 13-2 no no 1 0 0 By matching By matching By matching By MS/MS By matching By matching 1 82.54 82.54 2 0.0036601 1 56170 20150910_Q1_SA_NiHu_Masterprac_group13_B 62.162 57.967 4703200 0 0 0 4703200 0 0 7618 1173 7514 33592 22160 22160 1 SYQCLKETCEK Unmodified 1444.6327 0.63265023 358 O14757-2;F5H7S4;O14757;E7EPP6 CHEK1 Serine/threonine-protein kinase Chk1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 52.939 47.423 2 0.0030105 1 38841 20150910_Q1_SA_NiHu_Masterprac_group13_C 92.792 65.238 2362500 0 496070 981290 0 0 885160 7619 358 7515 33593;33594;33595 22161 22161 1 SYRHGDLPDIQIK Unmodified 1540.7998 0.79979063 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 113.5 106.14 3 0.0013983 4 75215 20150910_Q1_SA_NiHu_Masterprac_group15_C 78.964 65.638 28266000 2659800 2810800 0 279380 6660300 15856000 7620 1012 7516 33596;33597;33598;33599;33600 22162;22163;22164;22165 22163 4 SYRSVGGSGGGSFGDNLVTR Unmodified 1971.9399 0.93986594 783 P02545;P02545-3;D6RAQ3;E7EUI9 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 116.63 107.41 3 0.00012383 7 77709 20150910_Q1_SA_NiHu_Masterprac_group13_C 68.406 55.238 55820000 9510300 9787600 7951400 4997200 8117800 15456000 7621 783 7517 33601;33602;33603;33604;33605;33606 22166;22167;22168;22169;22170;22171;22172 22167 7 SYSDPPLK Unmodified 905.44945 0.44944778 958 P52597;B4DKS8 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 77.818 62.153 2 0.02554 2 50114 20150910_Q1_SA_NiHu_Masterprac_group13_C 75.043 52.001 18908000 0 0 10818000 0 8090400 0 7622 958 7518 33607;33608 22173;22174 22173 2 SYSEDDIHRSIK Unmodified 1448.6896 0.68957148 559 F8W840;Q9BYJ9;Q9Y5A9-2;F5H8I7;Q9Y5A9;Q7Z739 YTHDF1;YTHDF2;YTHDF3 YTH domain family protein 1;YTH domain family protein 2;YTH domain family protein 3 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 68.713 61.614 3 0.011541 2 43129 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.885 39.155 7585300 0 1206100 1505300 888540 1556100 2429200 7623 559 7519 33609;33610;33611;33612;33613 22175;22176 22175 2 SYSFIAR Unmodified 842.42865 0.42865276 1281 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 104.28 95.821 2 0.0064305 2 64219 20150910_Q1_SA_NiHu_Masterprac_group10_B 89.369 42.999 23575000 1931200 2510400 3637800 2681500 3571200 9243100 7624 1281 7520 33614;33615;33616;33617;33618;33619 22177;22178 22178 2 SYSQSSNLFR Unmodified 1187.5571 0.55710075 844 P17028 ZNF24 Zinc finger protein 24 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 100.06 92.989 2 0.011635 1 63540 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.942 59.777 11655000 0 527880 0 0 4551800 6575300 7625 844 7521 33620;33621;33622 22179 22179 1 SYVAWDREK Unmodified 1152.5564 0.55637247 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 83.081 75.375 2 4.8407E-54 6 57404 20150910_Q1_SA_NiHu_Masterprac_group15_C 143.37 111.05 71154000 6597500 4445900 7384800 9242300 13119000 30364000 7626 1012 7522 33623;33624;33625;33626;33627;33628;33629 22180;22181;22182;22183;22184;22185 22182 6 TAAALAPASLTSAR Unmodified 1299.7147 0.71466402 1623 Q9UQ35;F5GWZ7 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 120.6 111.03 2 0.0011055 4 72624 20150910_Q1_SA_NiHu_Masterprac_group10_B 77.192 50.485 56237000 6884300 10619000 9456900 2627300 1151300 25498000 7627 1623 7523 33630;33631;33632;33633;33634;33635 22186;22187;22188;22189 22188 4 TAAAQVGTSVSSATNTSTRPIITVHK Unmodified 2597.3773 0.37729247 18 A6NEM2;P51610-2;P51610 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 129.57 113.89 3 0.00214 2 75280 20150910_Q1_SA_NiHu_Masterprac_group10_C 45.679 35.924 830770 830770 0 0 0 0 0 7628 18 7524 33636 22190;22191 22191 2 TAAEDAIRNLHHYK Unmodified 1637.8274 0.82740237 1457 Q9BWF3;E9PB51;Q9BQ04;E7EQS3;Q9BWF3-3;D6R9K7;Q9BWF3-2;E9PLB0;E9PM61 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 99.645 91.515 3;4 0.0029293 2 62639 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.088 62.088 50736000 3960200 10667000 13015000 5744400 8038200 9310600 7629 1457 7525 33637;33638;33639;33640;33641;33642;33643;33644;33645;33646;33647;33648 22192;22193 22193 2 TAAELLQSQGSQAGGSQTLK Unmodified 1974.0018 0.0017974991 65 B4E049;Q14141-2;Q14141-4;B1AMS2;Q14141;F5H1J5 SEPT6 Septin-6 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 116.03 106.97 2 4.4009E-23 8 73173 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.384 40.567 15722000 2088600 1913800 2340000 1253700 2185900 5939900 7630 65 7526 33649;33650;33651;33652;33653;33654;33655;33656;33657 22194;22195;22196;22197;22198;22199;22200;22201 22197 8 TAAFLLPILSQIYSDGPGEALR Unmodified 2331.2474 0.2474475 693 O00571;O00571-2;B4DLU5 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 134.22 133.61 2 1.2094E-33 1 87454 20150910_Q1_SA_NiHu_Masterprac_group10_B 105.06 56.158 18422000 0 18422000 0 0 0 0 7631 693 7527 33658 22202 22202 1 TAANKSPCETISSPSSTLESK Unmodified 2194.0423 0.042341685 1473 Q9C0D5 TANC1 Protein TANC1 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 102.89 89.476 3 0.0067175 1 61242 20150910_Q1_SA_NiHu_Masterprac_group10_C 43.476 22.527 3106300 2144100 0 0 0 962290 0 7632 1473 7528 33659;33660 22203 22203 1 TAANLVVETGQDGVQIR Unmodified 1769.9272 0.92717599 1191 Q5T3I0;Q5T3I0-3;E9PAV9;E9PPY4;F2Z3C6;Q5T3I0-2 GPATCH4 G patch domain-containing protein 4 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 132.7 127.27 2 2.5063E-239 3 85239 20150910_Q1_SA_NiHu_Masterprac_group10_B 170.48 138.82 40870000 24727000 12800000 0 3342200 0 0 7633 1191 7529 33661;33662;33663 22204;22205;22206 22205 3 TAAPSPSLLYK Unmodified 1146.6285 0.62847478 1447 Q9BTC0;Q9BTC0-1;Q9BTC0-2;Q9BTC0-3 DIDO1 Death-inducer obliterator 1 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 127.79 113.76 2 0.00096701 3 75981 20150910_Q1_SA_NiHu_Masterprac_group10_C 93.561 61.527 66084000 18475000 0 16629000 0 21608000 9372300 7634 1447 7530 33664;33665;33666;33667 22207;22208;22209 22209 3 TAEADTSSELAK Unmodified 1221.5725 0.57247604 479 Q9BYW2;F2Z317 SETD2 Histone-lysine N-methyltransferase SETD2 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 52.6 46.575 2 0.0052749 1 37798 20150910_Q1_SA_NiHu_Masterprac_group13_C 64.121 64.121 4041300 464020 765220 1102800 247610 398220 1063400 7635 479 7531 33668;33669;33670;33671;33672;33673 22210 22210 1 TAEAGGVTGKGQDGIGSK Unmodified 1631.8115 0.81147753 815 P09874;F8WC10 PARP1 Poly [ADP-ribose] polymerase 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 2 4 3 4 2 50.872 44.016 2;3 2.3536E-58 11 38665 20150910_Q1_SA_NiHu_Masterprac_group15_C 119.96 119.96 129850000 31913000 18177000 17103000 21189000 36154000 5317800 7636 815 7532 33674;33675;33676;33677;33678;33679;33680;33681;33682;33683;33684;33685;33686;33687;33688;33689;33690;33691;33692;33693 22211;22212;22213;22214;22215;22216;22217;22218;22219;22220;22221 22216 11 TAEAGGVTGKGQDGIGSKAEK Unmodified 1959.9861 0.98614743 815 P09874;F8WC10 PARP1 Poly [ADP-ribose] polymerase 1 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 2 2 49.311 43.467 3;4 2.2258E-14 13 31375 20150910_Q1_SA_NiHu_Masterprac_group13_B 91.547 70.268 145950000 18828000 16857000 28974000 40275000 22001000 19019000 7637 815 7533 33694;33695;33696;33697;33698;33699;33700;33701;33702;33703;33704;33705;33706;33707 22222;22223;22224;22225;22226;22227;22228;22229;22230;22231;22232;22233;22234 22222 11 TAEEEELAEEKK Unmodified 1404.662 0.66201933 27 F5H101;Q76FK4-2;Q76FK4-4;A6NJK7;Q76FK4;F8WE42;Q76FK4-3 NOL8 Nucleolar protein 8 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 2 1 1 1 2 55.666 50.376 2;3 0.0020085 4 36134 20150910_Q1_SA_NiHu_Masterprac_group10_B 67.214 37.969 6774900 421110 1848800 914840 319070 945490 2325600 7638 27 7534 33708;33709;33710;33711;33712;33713;33714;33715 22235;22236;22237;22238 22238 4 TAEEPPQEKAPEPTDARK Unmodified 1992.9752 0.9752484 720 O43719;E9PFP2;Q5H919;Q5H918 HTATSF1 HIV Tat-specific factor 1 yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1 61.788 53.98 4 0.00027185 7 44064 20150910_Q1_SA_NiHu_Masterprac_group15_C 71.263 55.089 40581000 4337200 3160700 451030 1793900 16447000 14391000 7639 720 7535 33716;33717;33718;33719;33720;33721;33722;33723 22239;22240;22241;22242;22243;22244;22245 22241 7 TAEFQVAR Unmodified 920.47158 0.4715802 1543 Q9NSD9;F5H6Y1 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 74.47 69.708 2 6.2338E-09 1 48385 20150910_Q1_SA_NiHu_Masterprac_group15_B 119.29 70.73 4526000 1371400 0 0 0 0 3154600 7640 1543 7536 33724;33725 22246 22246 1 TAELSGSSSTLEPIISSSAHHVTTVNSTNCK Unmodified 3214.5412 0.54119927 531 P49790;F6QR24 NUP153 Nuclear pore complex protein Nup153 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 132.11 122.61 4 6.1756E-126 8 83029 20150910_Q1_SA_NiHu_Masterprac_group13_C 119.37 106.93 215620000 40016000 53174000 30811000 58012000 5406100 28197000 7641 531 7537 33726;33727;33728;33729;33730;33731 22247;22248;22249;22250;22251;22252;22253;22254 22248 8 TAENFRALCTGEK Unmodified 1495.7089 0.70892672 945 P49792;E9PGT0;Q2YDB7;H0Y548;P30405;Q08752 RANBP2;PPIF;PPID E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase F, mitochondrial;Peptidyl-prolyl cis-trans isomerase D yes no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 89.692 82.014 3 5.6392E-05 4 61169 20150910_Q1_SA_NiHu_Masterprac_group15_C 95.094 69.18 15753000 1147900 3513500 1529400 1720300 2132600 5708900 7642 945 7538 33732;33733;33734;33735;33736;33737 22255;22256;22257;22258 22257 4 TAENFRALSTGEK Unmodified 1422.7103 0.71030693 999 P62937;B4DM82;F8WE65;C9J5S7;Q9Y536;F5H284;A2BFH1 PPIA;PPIAL4A;PPIAL4D;PPIAL4G Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D;Peptidyl-prolyl cis-trans isomerase A-like 4G yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 85.435 77.865 2;3 2.4626E-109 10 53693 20150910_Q1_SA_NiHu_Masterprac_group15_B 149.3 107.27 230070000 14001000 45481000 40863000 11458000 36361000 81911000 7643 999 7539 33738;33739;33740;33741;33742;33743;33744;33745;33746;33747;33748;33749 22259;22260;22261;22262;22263;22264;22265;22266;22267;22268 22266 10 TAESSGGPSTSRVTDPQGK Unmodified 1860.8813 0.88134801 856 P19447;G3V1S1;H7C309 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 55.11 49.053 3 0.00057914 3 34935 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.565 64.565 5149700 0 998600 1018500 481140 986960 1664400 7644 856 7540 33750;33751;33752;33753;33754 22269;22270;22271 22270 3 TAGPEQGPGLGGR Unmodified 1195.5945 0.59454889 1178 Q5C9Z4 NOM1 Nucleolar MIF4G domain-containing protein 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 65.185 58.287 2 0.0051068 2 41087 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.167 44.254 4181600 0 539020 630850 326640 861790 1823300 7645 1178 7541 33755;33756;33757;33758;33759 22272;22273 22272 2 TAGPIASAQKQPAGK Unmodified 1423.7783 0.77832691 388 E7EVA0;P27816-6;P27816;P27816-2;P27816-4;E9PGM5;B5MEG9 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 2 2 2 2 2 44.752 39.481 2;3 3.6252E-21 8 32116 20150910_Q1_SA_NiHu_Masterprac_group10_C 111.72 96.721 68362000 9436500 8093100 11582000 10253000 17134000 11864000 7646 388 7542 33760;33761;33762;33763;33764;33765;33766;33767;33768;33769;33770;33771;33772;33773 22274;22275;22276;22277;22278;22279;22280;22281 22281 8 TAGSVRGGDEVYLLCDKVQK Unmodified 2194.1052 0.10521671 1021 Q00653-3;Q00653-4;Q00653 NFKB2 Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 125.07 114.62 3;4 1.7757E-17 10 76002 20150910_Q1_SA_NiHu_Masterprac_group10_C 99.092 83.085 106370000 49302000 8783800 31910000 12491000 3886100 0 7647 1021 7543 33774;33775;33776;33777;33778;33779;33780;33781;33782;33783 22282;22283;22284;22285;22286;22287;22288;22289;22290;22291 22290 10 TAGTICLETFK Unmodified 1239.6169 0.61692381 642 H3BR35;P15170;P15170-2;F5GWG9;Q8IYD1 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 133.28 117.59 2 0.0053081 1 79055 20150910_Q1_SA_NiHu_Masterprac_group10_C 72.731 35.223 9629400 9629400 0 0 0 0 0 7648 642 7544 33784 22292 22292 1 TAHNSEADLEESFNEHELEPSSPKSK Unmodified 2911.3108 0.31078863 152 B4E0G4;Q8IWS0 PHF6 PHD finger protein 6 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 130.16 114.47 4 0.031233 1 75798 20150910_Q1_SA_NiHu_Masterprac_group10_C 29.645 13.42 2474500 2474500 0 0 0 0 0 7649 152 7545 33785 22293 22293 1 TAIHTAAMDMLGGPGIESQCRK Unmodified 2343.1134 0.11335533 1239 Q6YN16-2;Q6YN16;B4E136 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 131.94 126.98 3 0.00048652 1 86825 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.748 41.088 0 0 0 0 0 0 0 7650 1239 7546 33786 22294 22294 1 TAILVGGMSTQK Unmodified 1204.6486 0.64855829 588 G3V529;Q9GZR7;F5H4J5;Q4V9L5;F5GYL3;F5H4V3 DDX24 ATP-dependent RNA helicase DDX24 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 112.27 102.7 2 0.0045421 5 69931 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.945 43.912 17249000 2671400 1513400 1516500 1206100 964990 9377000 7651 588 7547 33787;33788;33789;33790;33791;33792;33793 22295;22296;22297;22298;22299 22297 5 TAITVEHLAIK Unmodified 1194.6972 0.69722304 1534 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 122.53 113.03 2 8.629E-30 5 74916 20150910_Q1_SA_NiHu_Masterprac_group10_C 127.83 103.6 15755000 5594900 1629200 5248200 1315600 1646200 321270 7652 1534 7548 33794;33795;33796;33797;33798;33799;33800 22300;22301;22302;22303;22304 22304 5 TALINSTGEEVAMR Unmodified 1490.7399 0.73989249 783 P02545;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q3BDU5;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 119.9 118.08 2 0.0054239 1 76348 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.98 35.743 3267600 0 1716600 0 402530 0 1148500 7653 783 7549 33801;33802;33803 22305 22305 1 TALINSTGEEVAMRK Unmodified 1618.8349 0.83485551 783 P02545;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q3BDU5;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 110.68 100.08 3 0.0002811 5 66211 20150910_Q1_SA_NiHu_Masterprac_group10_B 72.815 42.639 8498900 997480 3129600 1510300 0 418020 2443500 7654 783 7550 33804;33805;33806;33807;33808 22306;22307;22308;22309;22310 22309 4 TALSEEEEEER Unmodified 1320.5681 0.56811894 1544 Q9NU22 MDN1 Midasin yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 64.348 56 2 0.0084531 2 39607 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.08 31.485 2487900 0 486090 223170 0 527110 1251500 7655 1544 7551 33809;33810;33811;33812 22311;22312 22311 2 TALVERDDFSSGTSSR Unmodified 1726.8122 0.81220581 918 P43304;F5GYK7 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 89.83 83.934 3 0.002745 3 57081 20150910_Q1_SA_NiHu_Masterprac_group10_B 67.136 43.68 8708100 431890 907930 0 811550 1873100 4683600 7656 918 7552 33813;33814;33815;33816;33817 22313;22314;22315 22315 3 TANLAEANASEEDK Unmodified 1461.6583 0.65833093 1255 Q7Z6E9;Q7Z6E9-2;Q7Z6E9-4;H3BUN0;I3L3Y2 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 59.157 56.246 2 0.012528 1 39974 20150910_Q1_SA_NiHu_Masterprac_group10_B 49.066 36.271 360730 0 360730 0 0 0 0 7657 1255 7553 33818 22316 22316 1 TANLAEANASEEDKIK Unmodified 1702.8374 0.83735793 1255 Q7Z6E9;Q7Z6E9-2;Q7Z6E9-4;H3BUN0;I3L3Y2 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 85.256 78.478 2;3 5.0254E-05 9 60747 20150910_Q1_SA_NiHu_Masterprac_group13_C 88.311 73.342 25747000 2106000 5039300 2288400 2172800 4721700 9419100 7658 1255 7554 33819;33820;33821;33822;33823;33824;33825;33826;33827;33828;33829 22317;22318;22319;22320;22321;22322;22323;22324;22325 22319 9 TANQLMNDFAEK Unmodified 1380.6344 0.63436479 1362 Q92878-2;Q92878;Q92878-3;E7EN38;E7ESD9 RAD50 DNA repair protein RAD50 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 128.84 126.99 2 0.012072 3 85604 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.267 31.376 16309000 0 5972200 0 1768000 0 8568800 7659 1362 7555 33830;33831;33832 22326;22327;22328 22327 2 TANVPQTVPMRLR Unmodified 1481.8137 0.81366656 469 E9PRV2;P46937-3;P46937-2;F5H202;P46937 YAP1 Yorkie homolog yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 2 1 1 121.03 109.34 3 0.0045635 2 72955 20150910_Q1_SA_NiHu_Masterprac_group10_C 62.088 44.971 10407000 2133100 1088100 3324600 1531900 2329500 0 7660 469 7556 33833;33834;33835;33836;33837;33838 22329;22330 22330 2 TAPGMGDQSGCYR Unmodified 1398.5656 0.5656333 1457 Q9BWF3;E9PB51;Q9BQ04;B0LM41 RBM4;RBM4B;RBM14 RNA-binding protein 4;RNA-binding protein 4B;RNA-binding protein 14 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 68.121 59.924 2 0.0015783 1 42217 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.78 71.593 4396900 0 0 0 0 497780 3899100 7661 1457 7557 33839;33840 22331 22331 1 TAPGMGDQSGCYRCGK Unmodified 1743.7127 0.71270824 1457 Q9BWF3;Q9BQ04;B0LM41 RBM4;RBM4B;RBM14 RNA-binding protein 4;RNA-binding protein 4B;RNA-binding protein 14 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 60.315 52.971 3 0.0034736 2 43548 20150910_Q1_SA_NiHu_Masterprac_group13_C 53.3 50.044 7268100 0 0 2939900 994450 973970 2359800 7662 1457 7558 33841;33842;33843;33844 22332;22333 22332 2 TAPTLSPEHWK Unmodified 1265.6404 0.64043645 1399 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 2 1 2 107.14 95.956 2;3 0.0034768 2 69647 20150910_Q1_SA_NiHu_Masterprac_group15_C 78.342 67.022 5239200 616030 1448200 571810 0 2603200 0 7663 1399 7559 33845;33846;33847;33848;33849;33850 22334;22335 22334 2 TAQEVETYRR Unmodified 1251.6208 0.62076364 853 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 46.448 41.009 3 3.1938E-09 7 33050 20150910_Q1_SA_NiHu_Masterprac_group13_C 114.97 88.852 46296000 3194900 9352800 16681000 2113700 3758300 11195000 7664 853 7560 33851;33852;33853;33854;33855;33856 22336;22337;22338;22339;22340;22341;22342 22337 7 TAQGLPGTSNSNSSR Unmodified 1475.6964 0.69644778 1576 Q9P275;Q9P275-2;E9PEW0 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 54.758 48.55 2 0.018348 1 34076 20150910_Q1_SA_NiHu_Masterprac_group13_B 43.316 22.577 16397000 1411500 1883400 1897700 894660 4478800 5831200 7665 1576 7561 33857;33858;33859;33860;33861;33862 22343 22343 1 TAQGLSPVDQRK Unmodified 1298.6943 0.69426293 348 E7EN20;H0Y612;Q9UPN9-2;Q9UPN9 TRIM33 E3 ubiquitin-protein ligase TRIM33 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 51.63 46.988 3 0.003387 4 33185 20150910_Q1_SA_NiHu_Masterprac_group13_B 62.694 39.666 3125000 567620 337380 876850 444350 0 898800 7666 348 7562 33863;33864;33865;33866;33867 22344;22345;22346;22347 22344 3 TASSREIRQAFK Unmodified 1392.7474 0.74736113 1287 Q8IXB1;Q8IXB1-2;F8W884;Q3B7W8;E7EP04;Q71S60 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 62.748 54.501 3 0.032658 2 38650 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.592 29.636 97654000 0 20832000 36774000 0 21525000 18523000 7667 1287 7563 33868;33869;33870;33871 22348;22349 22349 2 TASTLLKPAPSGLPSERK Unmodified 1852.0418 0.04181182 11 Q8N201;A4D212 INTS1;DKFZP586J0619 Integrator complex subunit 1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 101.39 95.849 3 0.00534 2 71241 20150910_Q1_SA_NiHu_Masterprac_group13_C 65.905 55.764 6325900 0 960690 1392700 1071700 0 2900900 7668 11 7564 33872;33873;33874;33875 22350;22351 22350 2 TATGPSTGGGTVISR Unmodified 1360.6947 0.69465686 568 H0Y5I5;F8WCX2;Q8N1G0-2;Q8N1G0 ZNF687 Zinc finger protein 687 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 71.107 64.505 2 0.00057611 2 44935 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.296 55.16 4101500 0 473790 0 0 835600 2792100 7669 568 7565 33876;33877;33878 22352;22353 22352 2 TATVHEVIR Unmodified 1024.5665 0.56654322 1080 Q13415 ORC1 Origin recognition complex subunit 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 59.278 51.407 2 0.017155 1 37003 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.614 47.094 2338700 0 680790 898340 0 215590 544010 7670 1080 7566 33879;33880;33881;33882 22354 22354 1 TAVAPIER Unmodified 855.48142 0.48141661 795;826 P12236;P12235;Q9H0C2;P05141 SLC25A6;SLC25A4;SLC25A31;SLC25A5 ADP/ATP translocase 3;ADP/ATP translocase 1;ADP/ATP translocase 4;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed no no 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 62.851 57.476 2 0.016506 2 40468 20150910_Q1_SA_NiHu_Masterprac_group13_B 82.75 11.058 26721000 5239300 3207900 0 2422900 8810000 7041000 7671 826;795 7567 33883;33884;33885;33886;33887 22355;22356 22355 2 TAVAPIERVK Unmodified 1082.6448 0.64479354 795;826 P12236;P12235;Q9H0C2;P05141 SLC25A6;SLC25A4;SLC25A31;SLC25A5 ADP/ATP translocase 3;ADP/ATP translocase 1;ADP/ATP translocase 4;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed no no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 72.743 65.365 2 0.0084434 4 45675 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.827 40.846 50885000 10693000 3282300 8507800 5937300 16598000 5867500 7672 826;795 7568 33888;33889;33890;33891;33892;33893 22357;22358;22359;22360 22358 4 TAVCDIPPRGLK Unmodified 1325.7126 0.71255553 1007;542 P68371;E7EWR1;Q5ST81;F5H8C9;Q9BVA1;Q13885;B4DFH6;B4DJ43;P04350;F5H0I4;C9JAA5;Q5SQY0;Q3ZCM7;I3L2F9;A6NNZ2;F8VUJ7;Q5JP53;F8VYX6;F8VW92;P07437;E9PBJ4 TUBB4B;TUBB;TUBB2B;TUBB2A;TUBB4A;TUBB8 Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta chain no no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 2 1 2 3 2 99.029 91.215 3 0.0018515 3 63414 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.525 46.752 11209000 173520 1950900 1096600 1112300 2321500 4554500 7673 1007;542 7569 33894;33895;33896;33897;33898;33899;33900;33901;33902;33903;33904 22361;22362;22363 22362 3 TAVHAGNINFK Acetyl (Protein N-term) 1212.6251 0.62512073 161 G3XAM7;B4E2G8;P35221;F6XBD8;P35221-2;E5RJZ2;E5RIT8;E5RFM3;E5RJL0;E5RIE0;E5RHV7;E5RGY6;E5RG03;E5RIC3;E5RIB1 CTNNA1 Catenin alpha-1 yes no 1 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 120.29 108.29 2 0.0020245 3 74002 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.014 66.614 5635200 588990 0 0 0 1975600 3070500 7674 161 7570 33905;33906;33907 22364;22365;22366 22364 3 TCDYAAADSSSLNK Unmodified 1501.6355 0.635487 72 B3KQX0;Q9NPA5-2;E2QRH5;Q5JWM1;Q9NPA5 ZFP64 Zinc finger protein 64 homolog, isoforms 1 and 2;Zinc finger protein 64 homolog, isoforms 3 and 4 no no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 76.305 68.843 2 0.0014962 5 49652 20150910_Q1_SA_NiHu_Masterprac_group10_C 68.972 68.972 22049000 2362800 3905600 3392700 2322300 4121100 5944400 7675 72 7571 33908;33909;33910;33911;33912;33913 22367;22368;22369;22370;22371 22371 5 TCEGCKGFFK Unmodified 1232.5318 0.53181397 1352;489 Q15627;P22736;P22736-2;F5GXF0;Q92570;Q92570-3;E9PBS2;Q92570-2;E9PBQ4;C9J8W4;Q6NXU0;F8W6I3;P43354;F5H4G9 NR4A1;NR4A3;NR4A2 Nuclear receptor subfamily 4 group A member 1;Nuclear receptor subfamily 4 group A member 3;Nuclear receptor subfamily 4 group A member 2 no no 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 2 2 66.792 66.214 2;3 0.0030427 4 46176 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.598 70.225 5279400 0 0 0 1935500 0 3343900 7676 489;1352 7572 33914;33915;33916;33917 22372;22373;22374;22375 22375 4 TCENFIRLCK Unmodified 1339.6377 0.63767603 1079 Q13356;Q13356-2;H7C2D2;E7EW80 PPIL2 Peptidyl-prolyl cis-trans isomerase-like 2;Peptidyl-prolyl cis-trans isomerase yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 111.19 102.77 3 0.037102 1 70283 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.722 27.078 4809200 1320100 0 0 0 0 3489100 7677 1079 7573 33918;33919 22376 22376 1 TCLDNLASKGK Unmodified 1205.6074 0.60742176 929 P46940;H0YLE8 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 69.59 62.312 3 0.0010415 4 43633 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.345 38.561 30398000 3102900 3835500 4628600 2794100 6452100 9585300 7678 929 7574 33920;33921;33922;33923;33924;33925 22377;22378;22379;22380 22378 4 TCMDPVPSCGK Unmodified 1250.5094 0.50936397 1066 Q12986;Q12986-2;F5GXD0;Q12986-3 NFX1 Transcriptional repressor NF-X1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 82.075 72.85 2 0.0074748 1 50449 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.536 64.123 3813900 0 688550 654830 0 1058900 1411600 7679 1066 7575 33926;33927;33928;33929 22381 22381 1 TCMDVLRENQMYGTNK Unmodified 1958.8649 0.86485179 660 Q02241-2;H7BYN4;Q02241;B4E1K0;H0YKQ5 KIF23 Kinesin-like protein KIF23 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 121.56 114.55 3 0.0046382 1 75673 20150910_Q1_SA_NiHu_Masterprac_group10_C 51.004 41.702 4157300 643000 997180 0 0 0 2517200 7680 660 7576 33930;33931;33932 22382 22382 1 TCMYRSEQEELRDK Unmodified 1843.8193 0.8192818 1312 Q8N9T8;D3YTE0;Q8N9T8-2 KRI1 Protein KRI1 homolog yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 74.194 65.17 3 0.014266 1 50934 20150910_Q1_SA_NiHu_Masterprac_group15_C 57.425 49.44 3483000 0 732620 972800 0 941250 836360 7681 1312 7577 33933;33934;33935;33936 22383 22383 1 TCRETEVGDPAGNELAEPEAK Unmodified 2272.0278 0.027754253 1387 Q96G46-2;Q96G46 DUS3L tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 97.968 92.629 3 0.00012329 2 69202 20150910_Q1_SA_NiHu_Masterprac_group13_C 58.755 43.933 5783200 0 1233100 1682100 701530 0 2166500 7682 1387 7578 33937;33938;33939;33940 22384;22385 22384 2 TCSDDVVDYFK Unmodified 1347.5653 0.56528217 255 C9JJU9;Q96P11-2;G3V0G9;Q96P11;Q96P11-4;Q96P11-3 NSUN5 Putative methyltransferase NSUN5 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.88 132.28 2 0.0038821 1 85885 20150910_Q1_SA_NiHu_Masterprac_group10_B 80.014 61.825 12955000 0 12955000 0 0 0 0 7683 255 7579 33941 22386 22386 1 TCSDDVVDYFKR Unmodified 1503.6664 0.6663932 255 C9JJU9;Q96P11-2;G3V0G9;Q96P11;Q96P11-4;Q96P11-3 NSUN5 Putative methyltransferase NSUN5 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 129.91 129.3 3 0.0017936 1 82734 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.864 58.605 2438600 0 2438600 0 0 0 0 7684 255 7580 33942 22387 22387 1 TCSPESQQIYGDIK Unmodified 1624.7403 0.74028643 1171 Q4VC44-2;Q4VC44;Q4VC44-3;I3L287;Q4VC44-5;Q4VC44-4 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 111.79 102.71 2 0.025549 4 69917 20150910_Q1_SA_NiHu_Masterprac_group15_B 42.958 23.177 4635400 844270 1813000 0 0 232470 1745700 7685 1171 7581 33943;33944;33945;33946 22388;22389;22390;22391 22388 4 TCSQVSSYSLEQESNGEIEHVTK Unmodified 2611.1708 0.17078968 917 P42695 NCAPD3 Condensin-2 complex subunit D3 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 130.86 117.98 3 1.9545E-300 3 85126 20150910_Q1_SA_NiHu_Masterprac_group15_B 172.3 152.37 46888000 11658000 0 14153000 0 0 21076000 7686 917 7582 33947;33948;33949 22392;22393;22394 22393 3 TCSVSTLSASVHNGAQVK Unmodified 1844.9051 0.90506034 1473 Q9C0D5;Q9C0D5-2 TANC1 Protein TANC1 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 105.19 94.418 3 1.0168E-08 3 63528 20150910_Q1_SA_NiHu_Masterprac_group10_C 94.007 74.338 1795100 1795100 0 0 0 0 0 7687 1473 7583 33950;33951 22395;22396;22397 22396 3 TCTTVAFTQVNSEDK Unmodified 1699.7723 0.77231483 991 P62424;Q5T8U2 RPL7A 60S ribosomal protein L7a yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 109.99 101.24 2 0.0011615 3 68079 20150910_Q1_SA_NiHu_Masterprac_group10_C 69.485 69.485 10173000 3196200 1556800 0 0 2500700 2919600 7688 991 7584 33952;33953;33954;33955 22398;22399;22400 22400 3 TCTTVAFTQVNSEDKGALAK Unmodified 2140.047 0.047033132 991 P62424;Q5T8U2 RPL7A 60S ribosomal protein L7a yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 122.76 113.06 3 9.2746E-12 5 75295 20150910_Q1_SA_NiHu_Masterprac_group10_C 94.639 81.973 13474000 9460900 1413000 0 0 967130 1632500 7689 991 7585 33956;33957;33958;33959;33960 22401;22402;22403;22404;22405 22405 5 TCTYEGCSETTSQVAK Unmodified 1820.7557 0.75567849 689 O00287 RFXAP Regulatory factor X-associated protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 73.11 63.784 2 0.0050292 1 49962 20150910_Q1_SA_NiHu_Masterprac_group15_C 50.04 42.324 1149100 0 328170 0 0 820970 0 7690 689 7586 33961;33962 22406 22406 1 TCVADESHAGCEK Unmodified 1462.5817 0.58167729 294 CON__P02769 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 4 4 3 3 4 34.13 29.685 2;3 3.7687E-09 17 19897 20150910_Q1_SA_NiHu_Masterprac_group13_B 103.13 101.43 433540000 37899000 93242000 232830000 42380000 9329900 17856000 + 7691 294 7587 33963;33964;33965;33966;33967;33968;33969;33970;33971;33972;33973;33974;33975;33976;33977;33978;33979;33980;33981;33982;33983 22407;22408;22409;22410;22411;22412;22413;22414;22415;22416;22417;22418;22419;22420;22421;22422;22423 22408 17 TDAASKPFAEVR Unmodified 1290.6568 0.65681479 261 C9JN15;Q13427-2;Q32LZ0;C9JM79;E9PG73;Q13427 PPIG Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase G yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 78.825 71.296 3 0.0046309 1 49463 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.945 43.912 10142000 1143400 1268700 1201600 1251700 1955200 3321400 7692 261 7588 33984;33985;33986;33987;33988;33989 22424 22424 1 TDAAVSFAK Acetyl (Protein N-term) 950.47091 0.4709115 795 P05141 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 2 1 2 118.67 110.61 1;2 0.0077527 8 74035 20150910_Q1_SA_NiHu_Masterprac_group10_C 77.192 37.57 131050000 25181000 20502000 22373000 30171000 3248300 29573000 7693 795 7589 33990;33991;33992;33993;33994;33995;33996;33997;33998;33999 22425;22426;22427;22428;22429;22430;22431;22432 22432 8 TDEDVCSLECK Unmodified 1354.5381 0.53808114 190 B7Z5N6;Q5T1V6-2;Q5T1V6;Q5T1V5 DDX59 Probable ATP-dependent RNA helicase DDX59 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 76.691 74.659 2 0.0004655 1 51904 20150910_Q1_SA_NiHu_Masterprac_group10_B 100.93 88.3 1939100 0 782140 0 0 0 1157000 7694 190 7590 34000;34001 22433 22433 0 TDKQRENYLGNSLMAPVGR Unmodified 2148.0746 0.074585287 1449 Q9BU76-4;Q9BU76;Q9BU76-2;Q9BU76-3 MMTAG2 Multiple myeloma tumor-associated protein 2 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 129.26 124.29 4 0.018475 1 84113 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.157 37.157 3796200 0 0 0 0 0 3796200 7695 1449 7591 34002 22434 22434 1 TDLDDDITALKQR Unmodified 1502.7577 0.75765105 131 B4DV47;Q6P1J9 CDC73 Parafibromin yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 127.6 124.81 3 0.0023228 1 84549 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.295 35.932 6160700 0 773970 0 0 0 5386700 7696 131 7592 34003;34004 22435 22435 1 TDLPEEKPDATPQNPFLK Unmodified 2039.0211 0.021135958 2 A1X283 SH3PXD2B SH3 and PX domain-containing protein 2B yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 132.46 114.59 3 0.0029236 1 81411 20150910_Q1_SA_NiHu_Masterprac_group15_C 51.127 37.141 19027000 0 0 10033000 0 8994300 0 7697 2 7593 34005;34006 22436 22436 1 TDLYHLQK Unmodified 1016.5291 0.52909508 151 B4E025;Q9UBD5;Q9UBD5-2 ORC3 Origin recognition complex subunit 3 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 81.873 74.225 2 5.0207E-79 7 51528 20150910_Q1_SA_NiHu_Masterprac_group13_B 157.58 116.15 28034000 4284300 3741800 5365000 2358700 3073000 9211500 7698 151 7594 34007;34008;34009;34010;34011;34012;34013 22437;22438;22439;22440;22441;22442;22443 22437 7 TDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIR Unmodified 4037.7985 0.79852145 838 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 1 94.142 86.602 5;6 4.2405E-17 10 58511 20150910_Q1_SA_NiHu_Masterprac_group10_B 35.139 34.336 68089000 8830400 11654000 5596500 8576200 21514000 11918000 7699 838 7595 34014;34015;34016;34017;34018;34019;34020;34021;34022;34023 22444;22445;22446;22447;22448;22449;22450;22451;22452;22453 22451 9 TDNSSLSSPLNPK Unmodified 1358.6678 0.66777341 1596 Q9UIG0-2;Q9UIG0 BAZ1B Tyrosine-protein kinase BAZ1B yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 2 1 1 1 2 1 98.05 88.706 2 0.008202 2 60073 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.434 38.19 14656000 2876900 1860700 1810800 1326800 3201700 3579100 7700 1596 7596 34024;34025;34026;34027;34028;34029;34030;34031 22454;22455 22454 2 TDNVEVTDGENK Unmodified 1319.5841 0.58410336 1353 Q92576-2;Q92576;E7ER40 PHF3 PHD finger protein 3 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 51.145 44.679 2 0.023949 1 33098 20150910_Q1_SA_NiHu_Masterprac_group10_C 50.222 35.987 529930 529930 0 0 0 0 0 7701 1353 7597 34032 22456 22456 1 TDNVEVTDGENKEIK Unmodified 1689.8057 0.80572345 1353 Q92576-2;Q92576;E7ER40 PHF3 PHD finger protein 3 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 71.446 64.101 3 0.00018597 2 44842 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.363 72.788 6235800 580480 1163000 1028700 418300 815530 2229700 7702 1353 7598 34033;34034;34035;34036;34037;34038 22457;22458 22458 2 TDNVEVTDGENKEIKVK Unmodified 1916.9691 0.96910039 1353 Q92576-2;Q92576;E7ER40 PHF3 PHD finger protein 3 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 83.718 74.895 4 0.010199 2 58650 20150910_Q1_SA_NiHu_Masterprac_group13_C 42.257 26.984 3439700 517110 633300 1039600 405310 844370 0 7703 1353 7599 34039;34040;34041;34042;34043 22459;22460 22460 2 TDPGTVFVMNK Unmodified 1207.5907 0.59070906 245 C9JG87;Q9NYK5;Q9NYK5-2 MRPL39 39S ribosomal protein L39, mitochondrial yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 122.9 118.14 2 0.0069307 1 80332 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.346 43.228 892330 0 0 0 0 0 892330 7704 245 7600 34044 22461 22461 1 TDPSTLTEEEVSK Unmodified 1434.6726 0.67258402 1235 Q6UB35 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 94.438 88.205 2 0.020053 1 60423 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.527 31.315 2429800 0 0 0 674570 988850 766350 7705 1235 7601 34045;34046;34047 22462 22462 1 TDQADGPREPPQSAR Unmodified 1623.7601 0.76011066 1531 Q9NQS7-2;Q9NQS7 INCENP Inner centromere protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 2 1 2 45.355 38.316 3 0.006752 2 27381 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.897 18.602 3031400 0 0 929360 0 228660 1873400 7706 1531 7602 34048;34049;34050;34051;34052 22463;22464 22464 2 TDRYTIHSQLEHLQSK Acetyl (Protein N-term) 1996.9967 0.99665254 1459 Q9BWJ5 SF3B5 Splicing factor 3B subunit 5 yes yes 1 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 121.62 111.6 4 8.2691E-19 5 72762 20150910_Q1_SA_NiHu_Masterprac_group10_B 103.6 82.184 26857000 3580200 2978400 8617700 0 0 11681000 7707 1459 7603 34053;34054;34055;34056 22465;22466;22467;22468;22469 22467 5 TDSYFNPK Unmodified 970.43961 0.43961137 1248 Q7Z2T5;Q7Z2T5-2 TRMT1L TRMT1-like protein yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 79 71.488 2 0.0074874 3 56071 20150910_Q1_SA_NiHu_Masterprac_group13_C 94.114 94.114 16197000 682200 2496000 2363600 646760 2691100 7317800 7708 1248 7604 34057;34058;34059;34060;34061;34062 22470;22471;22472 22470 3 TDSYFNPKMK Unmodified 1229.5751 0.575059 1248 Q7Z2T5;Q7Z2T5-2 TRMT1L TRMT1-like protein yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 89.403 81.692 2 0.0080997 3 55790 20150910_Q1_SA_NiHu_Masterprac_group10_B 91.658 49.31 5285700 464210 1001400 858840 614630 892120 1454500 7709 1248 7605 34063;34064;34065;34066;34067;34068 22473;22474;22475 22475 3 TDTAEAVPK Acetyl (Protein N-term) 972.47639 0.47639081 1448 Q9BTL3 FAM103A1 RNMT-activating mini protein yes yes 1 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 2 76.157 71.755 1 0.0043704 2 49776 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.665 52.137 3605800 0 581600 969430 432640 0 1622100 7710 1448 7606 34069;34070;34071;34072;34073 22476;22477 22476 2 TDTGIVTVEQSPSSSKLK Unmodified 1875.9789 0.97893679 1325 Q8NFC6;H0Y9Y2 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 103.7 95.299 3 2.0602E-58 6 63676 20150910_Q1_SA_NiHu_Masterprac_group10_B 120.59 120.59 24139000 7535400 3467900 3843200 1761200 3344500 4186800 7711 1325 7607 34074;34075;34076;34077;34078;34079 22478;22479;22480;22481;22482;22483 22482 6 TDVCTVHLPNDFPTCLTSESK Unmodified 2420.0988 0.098810706 547 Q99590-2;F8VXG7;Q99590;F8W028 SCAF11 Protein SCAF11 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 133.37 115.52 3 0.0031862 1 82483 20150910_Q1_SA_NiHu_Masterprac_group15_C 46.569 29.906 11619000 0 0 0 0 11619000 0 7712 547 7608 34080 22484 22484 1 TDVSTEHPPFYYNIHR Unmodified 1974.9224 0.92242497 1248 Q7Z2T5 TRMT1L TRMT1-like protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 128.23 121.14 3;4 0.00051548 2 83873 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.904 60.483 13814000 7150800 902320 0 0 0 5760500 7713 1248 7609 34081;34082;34083 22485;22486 22485 2 TDVSTEHPPFYYNIHRHSIK Unmodified 2440.1924 0.19239224 1248 Q7Z2T5 TRMT1L TRMT1-like protein yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 111.94 104.75 5 0.040282 1 71540 20150910_Q1_SA_NiHu_Masterprac_group15_B 29.8 29.8 5421100 0 0 1846700 420710 0 3153700 7714 1248 7610 34084;34085;34086 22487 22487 0 TEAASLRVLER Unmodified 1243.6884 0.68844927 1643 Q9Y3A4;Q9NSQ0 RRP7A;RRP7B Ribosomal RNA-processing protein 7 homolog A;Putative ribosomal RNA-processing protein 7 homolog B yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 103.98 96.564 3 0.0035604 2 65834 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.261 30.984 36936000 0 5494400 4160000 0 0 27282000 7715 1643 7611 34087;34088;34089 22488;22489 22489 2 TEACDRLLAHRVETK Unmodified 1797.9156 0.91556545 1471 Q9BZE4;B7Z7A3;B4DY13 GTPBP4 Nucleolar GTP-binding protein 1 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 73.885 68.884 3 0.037715 1 48090 20150910_Q1_SA_NiHu_Masterprac_group10_B 50.108 26.93 4980000 0 770040 0 687470 1451900 2070600 7716 1471 7612 34090;34091;34092;34093 22490 22490 0 TEADVNPK Acetyl (Protein N-term) 914.43453 0.434526 969 P55769;B1AHD1 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes yes 1 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 55.627 51.315 2 0.027803 2 36649 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.419 38.282 4734700 0 1204600 1864500 779150 0 886530 7717 969 7613 34094;34095;34096;34097 22491;22492 22491 2 TEAESWYQTK Unmodified 1241.5564 0.55643205 299 P13647;CON__P13647;E7EU87;CON__Q5XQN5;CON__Q922U2;H0YI76;H0YIN9 KRT5 Keratin, type II cytoskeletal 5 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 88.875 83.661 2 0.013063 1 57106 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.672 38.193 2327500 0 623600 792080 417320 0 494520 + 7718 299 7614 34098;34099;34100;34101 22493 22493 1 TEAFTSPEALQPGGTALAPKK Unmodified 2113.1055 0.10553429 39 Q7Z5J4-3;E7EVZ3;Q7Z5J4;A8MTC3 RAI1 Retinoic acid-induced protein 1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 132.42 116.73 3 0.0017385 1 78129 20150910_Q1_SA_NiHu_Masterprac_group10_C 47.088 25.037 3080200 3080200 0 0 0 0 0 7719 39 7615 34102 22494 22494 1 TEDEHFEFHSRPCPTK Unmodified 2015.8796 0.87957387 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 3 79.708 72.575 3;4 3.0191E-07 8 57357 20150910_Q1_SA_NiHu_Masterprac_group13_C 93.478 85.967 64237000 4906100 12328000 13882000 5948300 7715200 19457000 7720 1611 7616 34103;34104;34105;34106;34107;34108;34109;34110;34111;34112;34113;34114;34115;34116 22495;22496;22497;22498;22499;22500;22501;22502 22498 8 TEDEVLTSK Unmodified 1020.4975 0.49752018 1437 Q9BQ61 C19orf43 Uncharacterized protein C19orf43 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 54.762 50.362 2 0.0060855 4 35567 20150910_Q1_SA_NiHu_Masterprac_group13_B 93.556 70.202 12624000 0 7190700 0 1409700 1414900 2608900 7721 1437 7617 34117;34118;34119;34120 22503;22504;22505;22506 22503 4 TEDEVLTSKGDAWAK Unmodified 1648.7944 0.79443049 1437 Q9BQ61 C19orf43 Uncharacterized protein C19orf43 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 2 108.68 99.869 2;3 1.412E-105 10 73203 20150910_Q1_SA_NiHu_Masterprac_group13_C 148.48 126.62 193600000 42558000 23858000 52135000 24585000 26334000 24133000 7722 1437 7618 34121;34122;34123;34124;34125;34126;34127;34128;34129;34130;34131;34132;34133;34134 22507;22508;22509;22510;22511;22512;22513;22514;22515;22516 22509 10 TEDGGEFEEGASENNAK Unmodified 1782.718 0.71803066 720 O43719;E9PFP2 HTATSF1 HIV Tat-specific factor 1 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 69.019 61.672 2 4.4355E-155 6 49585 20150910_Q1_SA_NiHu_Masterprac_group13_C 149 143.46 29102000 5445400 5758000 4962700 2040300 4489200 6406800 7723 720 7619 34135;34136;34137;34138;34139;34140;34141 22517;22518;22519;22520;22521;22522 22518 6 TEDLGCMYK Unmodified 1115.4627 0.46273136 1088 Q13618-3;Q13618-2;Q13618 CUL3 Cullin-3 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 93.345 86.326 2 0.025927 2 58630 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.568 49.897 3033300 0 834250 1149200 0 0 1049800 7724 1088 7620 34142;34143;34144 22523;22524 22524 2 TEEADLLQTK Unmodified 1146.5768 0.57683314 770 O95347-2;O95347 SMC2 Structural maintenance of chromosomes protein 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 90.778 88.696 2 0.0061752 3 60188 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.412 47.85 1887500 0 850410 0 0 0 1037100 7725 770 7621 34145;34146 22525;22526;22527 22527 3 TEEGEIDYSAEEGENRR Unmodified 1982.8454 0.84535644 236 Q8WVV9-4;C9J9G0;Q8WVV9;Q5JB52;B7WPG3;Q8WVV9-3;Q8WVV9-2;C9IYN3 HNRNPLL;HNRPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 80.438 75.224 3 0.00083209 5 58795 20150910_Q1_SA_NiHu_Masterprac_group13_C 74.789 71.148 26893000 0 10099000 4923000 1353800 0 10517000 7726 236 7622 34147;34148;34149;34150 22528;22529;22530;22531;22532 22530 5 TEEGPTLSYGRDGR Unmodified 1536.7168 0.71684887 52 P43243;A8MXP9;D6REM6;D6R991 MATR3 Matrin-3 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 1 1 2 1 1 80.137 73.433 3 0.0011285 4 50888 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.435 45.856 24823000 3576000 3283500 2945000 4579000 3425600 7014300 7727 52 7623 34151;34152;34153;34154;34155;34156;34157;34158 22533;22534;22535;22536 22534 4 TEEIAEEEETVFPK Unmodified 1649.7672 0.76721268 1534 Q9NR30;Q3SWU7 DDX21 Nucleolar RNA helicase 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 132.53 126.68 2 0 8 85312 20150910_Q1_SA_NiHu_Masterprac_group13_B 209.25 175.93 304160000 0 48431000 0 25582000 186700000 43452000 7728 1534 7624 34159;34160;34161;34162;34163;34164;34165 22537;22538;22539;22540;22541;22542;22543;22544 22537 8 TEEIAEEEETVFPKAK Unmodified 1848.8993 0.89928949 1534 Q9NR30;Q3SWU7 DDX21 Nucleolar RNA helicase 2 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 129.36 121.33 2;3 0 9 77368 20150910_Q1_SA_NiHu_Masterprac_group10_C 219.41 197.04 100090000 16022000 11119000 21506000 6086300 10774000 34583000 7729 1534 7625 34166;34167;34168;34169;34170;34171;34172;34173;34174;34175 22545;22546;22547;22548;22549;22550;22551;22552;22553 22553 8 TEELEEESFPER Unmodified 1493.6522 0.65218292 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 2 1 113.38 105.23 2 1.7208E-64 5 68874 20150910_Q1_SA_NiHu_Masterprac_group13_B 142.1 112.33 58138000 13361000 5262300 7834300 6662500 13852000 11166000 7730 1639 7626 34176;34177;34178;34179;34180;34181;34182;34183;34184 22554;22555;22556;22557;22558 22554 5 TEELEEESFPERSK Unmodified 1708.7792 0.77917435 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 97.065 89.052 2;3 3.133E-08 7 60129 20150910_Q1_SA_NiHu_Masterprac_group13_B 99.941 99.941 83299000 20723000 8429900 13247000 15380000 12819000 12701000 7731 1639 7627 34185;34186;34187;34188;34189;34190;34191;34192;34193;34194;34195;34196 22559;22560;22561;22562;22563;22564;22565 22559 7 TEELEEESFPERSKK Unmodified 1836.8741 0.87413737 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 2 2 2 2 84.052 75.51 3;4 2.5726E-20 5 53005 20150910_Q1_SA_NiHu_Masterprac_group10_C 109.95 53.495 56644000 14469000 0 15046000 16118000 2505800 8504200 7732 1639 7628 34197;34198;34199;34200;34201;34202;34203;34204;34205;34206 22566;22567;22568;22569;22570 22570 5 TEELNREVATNSELVQSGK Unmodified 2103.0444 0.044390595 286;304;485 P02533;CON__P02533;Q04695;CON__Q04695;H9KV34;A8MW45;CON__Q9QWL7;F5GWP8 KRT14;KRT17;JUP Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 110.07 101.18 3 1.8496E-65 8 69017 20150910_Q1_SA_NiHu_Masterprac_group15_B 123 103.13 23562000 1393300 6648400 6348700 3305800 2149400 3716100 + 7733 286;304;485 7629 34207;34208;34209;34210;34211;34212 22571;22572;22573;22574;22575;22576;22577;22578 22576 8 TEEPMETEPK Unmodified 1189.5173 0.51726935 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 57.334 51.484 2 0.0086058 3 37077 20150910_Q1_SA_NiHu_Masterprac_group10_B 81.017 73.754 9333000 0 2228200 2053200 0 0 5051700 7734 486 7630 34213;34214;34215 22579;22580;22581 22581 3 TEEPMETEPKGAADVEK Unmodified 1859.8459 0.84587371 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 2 83.312 74.505 2;3 0.00031769 11 58197 20150910_Q1_SA_NiHu_Masterprac_group13_C 83.292 83.292 103590000 849840 27133000 20571000 1467400 2827000 50741000 7735 486 7631 34216;34217;34218;34219;34220;34221;34222;34223;34224 22582;22583;22584;22585;22586;22587;22588;22589;22590;22591;22592 22584 11 TEEPMETEPKGAADVEK Oxidation (M) 1875.8408 0.84078833 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 1 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 68.568 59.869 3 0.028327 2 41960 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.018 65.105 8226900 0 3809600 1092400 0 490340 2834500 7736 486 7631 34225;34226;34227;34228 22593;22594 22594 56 2 TEEPMETEPKGAADVEKVEEK Unmodified 2345.0944 0.094436835 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 2 1 104.21 91.863 3;4 3.0033E-07 5 68731 20150910_Q1_SA_NiHu_Masterprac_group13_C 82.755 61.273 7100600 0 0 5834100 0 0 1266500 7737 486 7632 34229;34230;34231 22595;22596;22597;22598;22599 22596 5 TEEQGIPRPLHPPPPPPVQPPQHPR Unmodified 2797.4776 0.47761564 364 E7EQT4;Q9UKV3;Q9UKV3-5;Q9UKV3-3;Q9UKV3-2;G3V3B0 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 129.49 111.74 5 0.016141 1 78663 20150910_Q1_SA_NiHu_Masterprac_group15_C 46.154 41.266 7473200 0 0 0 0 7473200 0 7738 364 7633 34232 22600 22600 1 TEESESQVEPEIK Unmodified 1503.694 0.69404774 361 Q9GZR1-2;Q9GZR1;E7EQN6;H0Y4F4;F8W6D9;D6RG09 SENP6 Sentrin-specific protease 6 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 77.278 75.923 2 0.014828 1 52376 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.726 29.148 611410 0 0 0 0 0 611410 7739 361 7634 34233 22601 22601 1 TEETGPGMDEEDSELVAK Unmodified 1935.8255 0.8255322 1544 Q9NU22 MDN1 Midasin yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 108.04 104.48 2 0.0057298 1 71430 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.121 35.082 637560 0 0 0 0 0 637560 7740 1544 7635 34234 22602 22602 1 TEICEEAEKPLIISER Unmodified 1915.9561 0.95609286 835 P13682 ZNF35 Zinc finger protein 35 yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 131.86 115.14 3 1.9649E-27 2 77867 20150910_Q1_SA_NiHu_Masterprac_group10_C 112.34 83.789 11299000 8727100 0 0 0 2572100 0 7741 835 7636 34235;34236 22603;22604 22604 2 TEICEEAEKPLIISERIQK Unmodified 2285.1937 0.19369737 835 P13682 ZNF35 Zinc finger protein 35 yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 131.5 131.2 4 0.0061305 1 84501 20150910_Q1_SA_NiHu_Masterprac_group13_B 53.861 1.3627 3652200 0 2074000 0 1578200 0 0 7742 835 7637 34237;34238 22605 22605 0 TEIEQTKIKGDVAGK Unmodified 1615.8781 0.87810054 1072 Q13127;Q13127-4;F8WAN5 REST RE1-silencing transcription factor yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 69.094 61.048 3 0.039084 1 42794 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.794 35.445 2986600 0 0 757780 884710 448430 895720 7743 1072 7638 34239;34240;34241;34242 22606 22606 0 TEIISEVNHLDNDK Unmodified 1625.7897 0.78967946 1175 Q562F6-2;Q562F6 SGOL2 Shugoshin-like 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 118.18 115.4 3 0.0048369 2 78670 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.335 38.985 2989100 0 1060300 0 0 0 1928800 7744 1175 7639 34243;34244 22607;22608 22607 2 TELGSQTPESSR Unmodified 1290.6052 0.60517315 546 F8VXI8;Q9H9L4;F8VX10;H0YIQ8;H0YID1;F8VUX5;Q9H9L4-4 KANSL2 KAT8 regulatory NSL complex subunit 2 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 56.775 47.684 2 0.029581 2 34174 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.712 20.614 1576200 0 0 370430 0 311530 894200 7745 546 7640 34245;34246;34247 22609;22610 22610 2 TELLGEETPMAADEGSAEK Unmodified 1976.8885 0.8884668 1507 Q9H9B1-3;Q9H9B1;Q9H9B1-4 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 131.54 126.23 2 1.9751E-81 5 83675 20150910_Q1_SA_NiHu_Masterprac_group10_B 125.51 98.252 25561000 3810200 7254500 0 2828100 0 11669000 7746 1507 7641 34248;34249;34250;34251 22611;22612;22613;22614;22615 22613 5 TELNSSAESEQPLDK Unmodified 1646.7635 0.76352429 1652 Q9Y5B6-3;Q9Y5B6-4;Q9Y5B6-2;Q9Y5B6 PAXBP1 PAX3- and PAX7-binding protein 1 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 86.291 78.68 2 0.00034482 6 54011 20150910_Q1_SA_NiHu_Masterprac_group10_B 85.493 40.982 8362200 1040600 1690600 1244100 834590 1474400 2077800 7747 1652 7642 34252;34253;34254;34255;34256;34257 22616;22617;22618;22619;22620;22621 22619 6 TEMDKSPFNSPSPQDSPR Unmodified 2018.9004 0.9003689 563 P08651-4;P08651-5;P08651-3;P08651-2;P08651;F8W9H9 NFIC Nuclear factor 1 C-type yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 104.15 94.796 3 4.3911E-08 5 70479 20150910_Q1_SA_NiHu_Masterprac_group13_C 91.065 80.237 23571000 0 3314000 3532100 2638900 4201100 9884900 7748 563 7643 34258;34259;34260;34261;34262;34263 22622;22623;22624;22625;22626 22623 5 TEMQDNTYPEILR Unmodified 1608.7454 0.7453718 524 F5H6K0;O43143 DHX15 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 132.19 131.89 2 0.020151 1 85075 20150910_Q1_SA_NiHu_Masterprac_group10_B 48.467 25.475 6727200 0 5312600 0 1414600 0 0 7749 524 7644 34264;34265 22627 22627 1 TENSGEALAKVEDSNPQK Unmodified 1915.9123 0.91231379 1570 Q9P016;Q9P016-2;E9PPQ6 THYN1 Thymocyte nuclear protein 1 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 93.558 84.572 3 0.00063966 3 64333 20150910_Q1_SA_NiHu_Masterprac_group13_C 81.01 69.785 6784600 0 530180 2607900 1893000 1753500 0 7750 1570 7645 34266;34267;34268;34269 22628;22629;22630 22630 3 TEPEEVSIEDSAQSDLK Unmodified 1875.8585 0.85854688 1155 Q16666-3;Q16666-2;Q16666;H3BLV7;E7EPR3 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 128.31 121.22 2 8.19E-08 2 77180 20150910_Q1_SA_NiHu_Masterprac_group10_C 92.439 66.831 4299700 2433600 1017300 0 0 0 848760 7751 1155 7646 34270;34271;34272 22631;22632 22632 2 TEPSKFPFPTKESQQSNFGTGEQK Unmodified 2698.2875 0.28747441 1592 Q9UHB7;Q9UHB7-2 AFF4 AF4/FMR2 family member 4 yes no 0 0 2 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 130.06 113.34 4 0.010082 2 75928 20150910_Q1_SA_NiHu_Masterprac_group10_C 36.096 24.977 4456200 3357200 0 0 0 1099100 0 7752 1592 7647 34273;34274 22633;22634 22634 2 TEQAISFAK Acetyl (Protein N-term) 1035.5237 0.52367535 826 P12236 SLC25A6 ADP/ATP translocase 3 yes yes 1 0 0 By MS/MS By matching By matching By matching By matching By matching 1 132.83 117.15 2 5.0307E-20 1 78556 20150910_Q1_SA_NiHu_Masterprac_group10_C 112.3 73.545 95007000 95007000 0 0 0 0 0 7753 826 7648 34275 22635 22635 1 TEQEEDEELLTESSK Unmodified 1765.7741 0.77414855 500 F5GZI1;O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 1 111.69 99.967 2 0.0025691 4 67896 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.98 58.98 12253000 1173900 1563900 1240300 0 3917000 4358100 7754 500 7649 34276;34277;34278;34279;34280;34281 22636;22637;22638;22639 22637 4 TEQEVVEGMDISTR Unmodified 1592.7352 0.73520105 1160 Q9ULU4-14;Q2HXV3;Q9ULU4-12;Q9ULU4-13;B7ZM62;Q9ULU4-8;Q2HXV1;Q9ULU4-5;Q9ULU4-10;Q9ULU4-7;E7ETU8;F5H0X3 ZMYND8 Protein kinase C-binding protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 119.99 119.38 2 0.020765 1 76812 20150910_Q1_SA_NiHu_Masterprac_group10_B 44.925 28.661 810030 0 810030 0 0 0 0 7755 1160 7650 34282 22640 22640 1 TEQQESDSVQCMPVAK Unmodified 1835.803 0.80296304 1417 Q96RE7 NACC1 Nucleus accumbens-associated protein 1 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 88.58 82.397 2 0.002272 3 56442 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.703 52.731 11056000 0 0 3841700 699710 0 6514100 7756 1417 7651 34283;34284;34285 22641;22642;22643 22643 3 TERASAQQENSSTCIGSAIK Unmodified 2137.007 0.0069592315 1560 Q9NXV6 CDKN2AIP CDKN2A-interacting protein yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 80.335 72.807 3 0.00014128 4 55775 20150910_Q1_SA_NiHu_Masterprac_group15_C 66.536 66.536 39099000 12063000 3993000 6662600 5958900 5046400 5375300 7757 1560 7652 34286;34287;34288;34289;34290;34291 22644;22645;22646;22647 22647 4 TERASAQQENSSTCIGSAIKSESGNSAR Unmodified 2925.3483 0.34825354 1560 Q9NXV6 CDKN2AIP CDKN2A-interacting protein yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 91.775 82.803 4 0.0017792 1 56898 20150910_Q1_SA_NiHu_Masterprac_group10_C 36.948 25.752 1216700 1216700 0 0 0 0 0 7758 1560 7653 34292 22648 22648 1 TERCPLLYQWHRK Unmodified 1785.9097 0.90969221 1541 Q9NS86 LANCL2 LanC-like protein 2 yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 108.46 98.678 3;4 0.0014986 4 67160 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.871 60.787 28885000 0 0 3945200 2651600 8781500 13506000 7759 1541 7654 34293;34294;34295;34296;34297;34298 22649;22650;22651;22652 22650 4 TERFDCHHCNESLFGK Acetyl (Protein N-term) 2077.8734 0.87344264 1101 Q14192;C9J3S8;F8WDA8;Q5TM15 FHL2 Four and a half LIM domains protein 2 yes no 1 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 2 1 1 1 2 2 116.27 106.24 3;4 0.00071798 3 72771 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.395 51.092 53937000 11308000 1375700 6804300 9267200 11980000 13202000 7760 1101 7655 34299;34300;34301;34302;34303;34304;34305;34306;34307 22653;22654;22655 22653 2 TERFGQGGAGPVGGQGPR Unmodified 1726.8499 0.84992872 865 P23246 SFPQ Splicing factor, proline- and glutamine-rich yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 76.855 71.139 3 0.0017248 1 49428 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.817 56.817 8956300 1008200 1654700 0 895750 2881200 2516500 7761 865 7656 34308;34309;34310;34311;34312 22656 22656 1 TESSPSEASQHSMQSPQK Unmodified 1944.8483 0.84833332 149 B4DZR9;Q9UQR0 SCML2 Sex comb on midleg-like protein 2 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 3 1 1 1 2 1 48.865 42.342 3 0.0014311 7 33458 20150910_Q1_SA_NiHu_Masterprac_group10_C 62.916 52.847 35955000 7651900 3350600 5061100 5229000 9531300 5131500 7762 149 7657 34313;34314;34315;34316;34317;34318;34319;34320;34321 22657;22658;22659;22660;22661;22662;22663 22662 6 TETDSVGTPQSNGGMR Unmodified 1635.7159 0.71586259 1479 Q9H0H5;F8VRD2;H0YIK5 RACGAP1 Rac GTPase-activating protein 1 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 68.421 59.849 2 0.0019344 2 43951 20150910_Q1_SA_NiHu_Masterprac_group10_C 59.673 50.223 9519300 609020 1641100 1073400 0 1809400 4386400 7763 1479 7658 34322;34323;34324;34325;34326 22664;22665 22665 2 TETDSVGTPQSNGGMRLHDFVSK Unmodified 2462.1496 0.14960072 1479 Q9H0H5;F8VRD2;H0YIK5 RACGAP1 Rac GTPase-activating protein 1 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 2 2 1 2 2 123.97 113.64 3;4 1.1239E-08 5 80487 20150910_Q1_SA_NiHu_Masterprac_group13_C 75.319 36.441 37027000 9096800 3622400 11469000 948780 6858000 5032800 7764 1479 7659 34327;34328;34329;34330;34331;34332;34333;34334;34335;34336;34337 22666;22667;22668;22669;22670 22666 5 TETEFPDEDEETR Unmodified 1596.6427 0.64274045 607 H0Y3K4;Q96EV2 RBM33 RNA-binding protein 33 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 85.199 83.266 2 0.0022316 1 56904 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.438 53.776 1819600 0 842890 0 0 0 976750 7765 607 7660 34338;34339 22671 22671 1 TETVVDDWDEEFDRGKEK Unmodified 2196.9811 0.98112164 1576 Q9P275;Q9P275-2;E9PEW0 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 2 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 132.48 118.91 3 2.6803E-131 3 83473 20150910_Q1_SA_NiHu_Masterprac_group13_C 144.29 135.91 44651000 0 0 15350000 0 5938700 23363000 7766 1576 7661 34340;34341;34342 22672;22673;22674 22672 3 TETYPQGQPVKFPANANSTK Unmodified 2177.0753 0.075296793 1302 Q8N5C6 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 109.19 101.85 3 0.032801 1 67180 20150910_Q1_SA_NiHu_Masterprac_group10_B 34.174 34.174 9094400 0 4378100 0 0 807580 3908700 7767 1302 7662 34343;34344;34345 22675 22675 1 TEVCQTCSKLK Unmodified 1352.6428 0.64282099 345 E5RJW4;Q9NW64;E5RHA8 RBM22 Pre-mRNA-splicing factor RBM22 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 49.001 40.528 3 0.0025417 2 32868 20150910_Q1_SA_NiHu_Masterprac_group13_C 87.184 59.855 1715600 0 481780 938680 0 295130 0 7768 345 7663 34346;34347;34348 22676;22677 22676 2 TEVNYTQLVDLHAR Unmodified 1657.8424 0.84238373 902 P36969-2;P36969 GPX4 Phospholipid hydroperoxide glutathione peroxidase, mitochondrial yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 2 132.74 132.54 2;3 4.2386E-08 3 85847 20150910_Q1_SA_NiHu_Masterprac_group13_B 99.161 85.148 44175000 0 31970000 0 12205000 0 0 7769 902 7664 34349;34350;34351 22678;22679;22680 22679 3 TEVSPVPR Unmodified 883.47633 0.47633123 462 E9PPY3;O43159 RRP8 Ribosomal RNA-processing protein 8 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 61.376 54.846 2 0.0074874 2 39263 20150910_Q1_SA_NiHu_Masterprac_group10_B 94.114 43.149 8253700 379980 1975900 2502700 0 0 3395100 7770 462 7665 34352;34353;34354;34355 22681;22682 22682 2 TEVSPVPRTDSHEAR Unmodified 1679.8227 0.82271092 462 E9PPY3;O43159 RRP8 Ribosomal RNA-processing protein 8 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 3 3 55.954 49.477 3;4 0.0028202 10 35226 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.224 33.01 57890000 4461700 11657000 7931400 3658100 7424200 22758000 7771 462 7666 34356;34357;34358;34359;34360;34361;34362;34363;34364;34365;34366;34367;34368;34369;34370 22683;22684;22685;22686;22687;22688;22689;22690;22691;22692 22688 10 TEVSQWEKPK Unmodified 1230.6245 0.62445203 1446 Q9BTA9-2;Q9BTA9;Q9BTA9-5;B4DMH1;Q9BTA9-3;C9JVK6;C9JD58 WAC WW domain-containing adapter protein with coiled-coil yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 63.752 61.67 3 0.0086555 2 43225 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.417 61.384 3027500 0 447270 0 0 0 2580200 7772 1446 7667 34371;34372 22693;22694 22694 2 TEWLDGK Unmodified 847.40758 0.40758296 999 P62937;B4DM82;Q567Q0;Q9Y536;F5H284;A2BFH1 PPIA;PPIAL4A;PPIAL4D;PPIAL4G Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D;Peptidyl-prolyl cis-trans isomerase A-like 4G yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 84.113 80.903 2 0.011512 1 55479 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.9 66.763 17513000 2016300 3963300 0 1421600 0 10112000 7773 999 7668 34373;34374;34375;34376 22695 22695 1 TEWLDGKHVVFGK Unmodified 1514.7882 0.78816332 999 P62937;B4DM82;Q567Q0 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 131.12 122.26 3 1.9355E-34 5 80381 20150910_Q1_SA_NiHu_Masterprac_group15_C 120.55 74.482 299990000 35536000 16601000 43745000 13236000 15307000 175570000 7774 999 7669 34377;34378;34379;34380;34381;34382;34383 22696;22697;22698;22699;22700 22699 5 TEWLDGKHVVFGKVK Unmodified 1741.9515 0.95154025 999 P62937;B4DM82;Q567Q0 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 2 128.1 117.24 3;4 2.2474E-56 8 79625 20150910_Q1_SA_NiHu_Masterprac_group15_C 130.61 110.92 482540000 62447000 3103800 288390000 18877000 29396000 80327000 7775 999 7670 34384;34385;34386;34387;34388;34389;34390;34391;34392 22701;22702;22703;22704;22705;22706;22707;22708 22707 8 TEYEEAQDAIVK Unmodified 1394.6565 0.65654002 162 B4E2Z2;P43246;E9PHA6;B4DL39;B4DSB9 MSH2 DNA mismatch repair protein Msh2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 98.178 95.895 2 0.026023 2 65480 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.298 23.186 2075800 0 752900 0 0 0 1322900 7776 162 7671 34393;34394 22709;22710 22709 2 TFANSSYLAQHIR Unmodified 1506.7579 0.75792582 555 Q8TF68-3;F8W6Q3;Q8TF68-2;Q8TF68;E9PHB3;F5H8L7 ZNF384 Zinc finger protein 384 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 1 1 2 2 125.09 115.49 2;3 4.8744E-155 8 79394 20150910_Q1_SA_NiHu_Masterprac_group15_C 162.31 146.36 92880000 28354000 3831900 5812100 543300 45679000 8659400 7777 555 7672 34395;34396;34397;34398;34399;34400;34401;34402;34403;34404 22711;22712;22713;22714;22715;22716;22717;22718 22714 7 TFANSSYLAQHIRIHSGAKPYSCNFCEK Unmodified 3285.5448 0.54478528 555 Q8TF68-3;F8W6Q3;Q8TF68-2;Q8TF68;E9PHB3;F5H8L7 ZNF384 Zinc finger protein 384 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 2 130.65 130.65 4;5 0.011167 2 83623 20150910_Q1_SA_NiHu_Masterprac_group13_B 39.59 27.807 98307000 0 0 0 98307000 0 0 7778 555 7673 34405;34406 22719;22720 22719 2 TFEECQQNLMK Unmodified 1426.6221 0.62208554 945 P49792;E9PGT0 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 103.65 95.773 2 4.1773E-55 6 71040 20150910_Q1_SA_NiHu_Masterprac_group13_C 139.38 116.35 21985000 0 2980700 3163100 2627300 5332500 7881300 7779 945 7674 34407;34408;34409;34410;34411;34412 22721;22722;22723;22724;22725;22726 22722 6 TFEELEHVSAPYK Unmodified 1548.746 0.74602373 1302 Q8N5C6 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 1 1 1 2 131.36 122.66 2;3 1.758E-274 8 86181 20150910_Q1_SA_NiHu_Masterprac_group15_B 186.16 147.49 109450000 36864000 21188000 11087000 17197000 2213700 20896000 7780 1302 7675 34413;34414;34415;34416;34417;34418;34419;34420;34421 22727;22728;22729;22730;22731;22732;22733;22734 22728 7 TFEELEHVSAPYKTGSK Unmodified 1921.9422 0.94215736 1302 Q8N5C6 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1 123.89 114.36 3;4 2.7774E-73 6 80722 20150910_Q1_SA_NiHu_Masterprac_group13_C 127.29 115.56 40641000 18677000 3060200 14776000 2429800 0 1698700 7781 1302 7676 34422;34423;34424;34425;34426;34427 22735;22736;22737;22738;22739;22740 22736 6 TFEGHDASVLK Unmodified 1202.5932 0.5931519 1058 Q12788 TBL3 Transducin beta-like protein 3 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 2 1 82.079 73.016 2 0.00047243 2 50669 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.39 58.676 2623500 0 277490 0 0 837100 1508900 7782 1058 7677 34428;34429;34430;34431 22741;22742 22741 1 TFFEELAVEDKQAGEEEK Unmodified 2097.9742 0.97424534 1321;411 E9PC67;F8VQZ0;Q5STZ8;Q8NE71;Q8NE71-2;Q5STZ7 ABCF1 ATP-binding cassette sub-family F member 1 no no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 133.57 133.57 3 4.2876E-210 1 86675 20150910_Q1_SA_NiHu_Masterprac_group13_B 163.9 147.3 30702000 0 0 0 30702000 0 0 7783 411;1321 7678 34432 22743 22743 1 TFGPVYEGK Unmodified 996.49165 0.49164694 515 F5H3H6;Q9BQ39 DDX50 ATP-dependent RNA helicase DDX50 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 93.218 89.733 2 0.023859 2 61443 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.704 53.243 6744600 1378200 1518500 0 937200 0 2910700 7784 515 7679 34433;34434;34435;34436 22744;22745 22744 2 TFGSTSQSSSFSK Unmodified 1349.6099 0.60992418 1492 Q9H582-2;Q9H582;F5GWV4 ZNF644 Zinc finger protein 644 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 77.604 69.106 2 0.023047 2 53427 20150910_Q1_SA_NiHu_Masterprac_group15_C 47.037 35.941 1304900 0 0 0 0 562370 742560 7785 1492 7680 34437;34438 22746;22747 22747 2 TFHLVNPNGQK Unmodified 1253.6517 0.65166983 1634 Q9Y2M0-2;Q9Y2M0;H3BUK3 FAN1 Fanconi-associated nuclease 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 90.728 83.248 3 0.031038 1 57146 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.189 21.417 6582300 0 898290 1193900 950440 1437900 2101800 7786 1634 7681 34439;34440;34441;34442;34443 22748 22748 1 TFLEFYEEKIKNNENK Unmodified 2045.0106 0.010571271 709 O43148;O43148-2;F5H2D9 RNMT mRNA cap guanine-N7 methyltransferase yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 133.29 133.29 3 3.3078E-07 1 86328 20150910_Q1_SA_NiHu_Masterprac_group13_B 81.327 67.061 5625100 0 0 0 5625100 0 0 7787 709 7682 34444 22749 22749 0 TFLTNDQTK Unmodified 1066.5295 0.52948901 945;1251 P49792;E9PGT0;P0DJD0;P0DJD1;F8VYC4;Q99666;O14715;E7ES93;B4DTM4;Q7Z3J3 RANBP2;RGPD1;RGPD2;RGPD5;RGPD8;RGPD4 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8;RanBP2-like and GRIP domain-containing protein 4 no no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 73.38 65.986 2 2.2966E-41 4 51210 20150910_Q1_SA_NiHu_Masterprac_group15_C 137.95 74.419 29956000 2621500 8967400 5845900 1620200 4557400 6343800 7788 945;1251 7683 34445;34446;34447;34448;34449;34450 22750;22751;22752;22753 22752 4 TFNIKNDFTEEEEAQVRK Unmodified 2197.0651 0.065126037 344 P63208;E5RJR5 SKP1 S-phase kinase-associated protein 1 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 130.17 129.86 4 0.0014905 1 83078 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.962 50.299 5186300 0 3178200 0 2008100 0 0 7789 344 7684 34451;34452 22754 22754 1 TFNLEKQNHTPRK Unmodified 1611.8481 0.84813781 1133 Q15233;C9JYS8;C9IZL7;C9J4X2;C9JJ13 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 51.674 45.818 4 0.013278 2 32824 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.726 51.726 10372000 0 662240 2044800 3455400 2580100 1629200 7790 1133 7685 34453;34454;34455;34456;34457 22755;22756 22756 2 TFNPGAGLPTDK Unmodified 1216.6088 0.60880197 814 P09661;H0YLR3;H0YMA0 SNRPA1 U2 small nuclear ribonucleoprotein A' yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 1 117.71 107.36 2 0.00035399 6 71876 20150910_Q1_SA_NiHu_Masterprac_group10_C 94.781 67.137 46079000 8940200 9074300 2669500 2467400 9858900 13068000 7791 814 7686 34458;34459;34460;34461;34462;34463;34464 22757;22758;22759;22760;22761;22762 22762 6 TFNPGAGLPTDKK Unmodified 1344.7038 0.70376498 814 P09661;H0YLR3;H0YMA0 SNRPA1 U2 small nuclear ribonucleoprotein A' yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 99.274 91.19 2;3 4.006E-16 12 62206 20150910_Q1_SA_NiHu_Masterprac_group15_B 111.66 94.545 251640000 46636000 48923000 20995000 11179000 66007000 57903000 7792 814 7687 34465;34466;34467;34468;34469;34470;34471;34472;34473;34474;34475;34476 22763;22764;22765;22766;22767;22768;22769;22770;22771;22772;22773;22774 22767 12 TFNPGAGLPTDKKK Unmodified 1472.7987 0.798728 814 P09661;H0YLR3;H0YMA0 SNRPA1 U2 small nuclear ribonucleoprotein A' yes no 0 0 2 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 84.784 77.384 3 0.014249 2 58369 20150910_Q1_SA_NiHu_Masterprac_group15_C 57.434 34.342 10357000 0 2398300 1080700 601390 3789800 2487300 7793 814 7688 34477;34478;34479;34480;34481 22775;22776 22776 2 TFNRSSTLIQHQR Unmodified 1586.8277 0.82773672 646 H3BS42;Q9H5H4;B7Z2Y7 ZNF768 Zinc finger protein 768 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 68.371 59.672 3 3.6701E-05 3 41993 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.417 61.828 5406600 0 805560 872700 0 1541000 2187300 7794 646 7689 34482;34483;34484;34485 22777;22778;22779 22778 3 TFQCELCSYTCPR Unmodified 1720.7007 0.70074657 940 P49711 CTCF Transcriptional repressor CTCF yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.77 126.81 2 0.040275 1 86613 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.939 41.808 3699400 0 0 0 0 0 3699400 7795 940 7690 34486 22780 22780 0 TFQGHTNEVNAIK Unmodified 1457.7263 0.72629134 185 B7Z475;Q9BZK7 TBL1XR1 F-box-like/WD repeat-containing protein TBL1XR1 no no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 69.328 68.173 3 0.0063503 1 47438 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.04 34.572 1048400 0 0 0 0 0 1048400 7796 185 7691 34487 22781 22781 1 TFQTLECQHK Unmodified 1290.6027 0.60267073 1201 Q5UIP0-2;Q5UIP0 RIF1 Telomere-associated protein RIF1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 2 3 66.094 59.765 2;3 7.4191E-09 10 42255 20150910_Q1_SA_NiHu_Masterprac_group15_B 113.18 73.327 43749000 5613100 8910800 4090100 2912100 6649200 15574000 7797 1201 7692 34488;34489;34490;34491;34492;34493;34494;34495;34496;34497;34498;34499;34500 22782;22783;22784;22785;22786;22787;22788;22789;22790;22791 22784 10 TFREWDFDLK Unmodified 1355.651 0.65100113 615 Q96EY4;H0Y9X1 TMA16 Translation machinery-associated protein 16 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 133.71 133.71 3 0.011047 2 86861 20150910_Q1_SA_NiHu_Masterprac_group13_B 72.289 39.25 90367000 0 0 0 90367000 0 0 7798 615 7693 34501 22792;22793 22792 2 TFSEVLAEK Unmodified 1022.5284 0.52842638 97 B4DLG2;O75152;E9PQ61;E9PBY7 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 1 1 1 2 2 112.4 102.67 2 0.012404 3 68638 20150910_Q1_SA_NiHu_Masterprac_group10_C 81.525 46.373 44398000 9146500 4012500 5506400 5387900 3904300 16440000 7799 97 7694 34502;34503;34504;34505;34506;34507;34508;34509;34510 22794;22795;22796 22796 3 TFSGQTHGFVHRK Unmodified 1500.7586 0.75859452 1377 Q96DG6 CMBL Carboxymethylenebutenolidase homolog yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 51.762 45.145 3 0.001155 2 37278 20150910_Q1_SA_NiHu_Masterprac_group13_C 69.229 49.602 5943600 0 0 1923400 804570 771140 2444500 7800 1377 7695 34511;34512;34513;34514 22797;22798 22797 2 TFSQSCSLLEHHK Unmodified 1572.7355 0.73547582 194 B7Z7H3;Q969J2;H7C1Y5;H7BY15 ZKSCAN4 Zinc finger protein with KRAB and SCAN domains 4 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 89.46 81.765 3 0.0061269 3 56238 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.32 44.747 9658900 1077700 1680400 1370100 1415900 1291100 2823700 7801 194 7696 34515;34516;34517;34518;34519;34520 22799;22800;22801 22800 3 TFVRGGVVNAAK Unmodified 1217.6881 0.68805534 378 O15042-2;E7ET15;O15042;E7EW00;H0Y8D9;C9JDJ7;C9J5L1 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 75.114 67.814 3 4.369E-07 5 47166 20150910_Q1_SA_NiHu_Masterprac_group10_B 101.3 77.923 21316000 0 4459300 2984900 1421300 3416400 9034000 7802 378 7697 34521;34522;34523;34524;34525 22802;22803;22804;22805;22806 22806 5 TGAAPIIDVVR Unmodified 1110.6397 0.63970816 447 E9PJD9;P46776;E9PLL6;E9PLX7 RPL27A 60S ribosomal protein L27a yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 132.98 115.14 2 0.013873 1 82073 20150910_Q1_SA_NiHu_Masterprac_group15_C 60.301 24.806 6776500 0 0 0 0 6776500 0 7803 447 7698 34526 22807 22807 1 TGALHSRLDL Unmodified 1081.588 0.58800695 976 P58012 FOXL2 Forkhead box protein L2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1 100.76 92.382 2 1.5723E-23 6 62076 20150910_Q1_SA_NiHu_Masterprac_group10_B 128.51 73.974 103720000 15400000 14345000 26206000 7206900 9981500 30584000 7804 976 7699 34527;34528;34529;34530;34531;34532;34533 22808;22809;22810;22811;22812;22813 22810 5 TGAPQYGSYGTAPVNLNIK Unmodified 1949.9847 0.98469087 590 Q6UN15-4;Q6UN15-3;G3XAD6;Q6UN15 FIP1L1 Pre-mRNA 3'-end-processing factor FIP1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.85 132.25 2 1.0849E-38 1 85824 20150910_Q1_SA_NiHu_Masterprac_group10_B 112.44 86.462 7651400 0 7651400 0 0 0 0 7805 590 7700 34534 22814 22814 1 TGEEDEEEFFCNR Unmodified 1660.6311 0.63112991 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 125.43 115.95 2 9.6753E-16 7 76904 20150910_Q1_SA_NiHu_Masterprac_group10_C 111.31 106.17 12602000 3789500 2000600 2552100 486200 1996600 1776900 7806 945 7701 34535;34536;34537;34538;34539;34540 22815;22816;22817;22818;22819;22820;22821 22821 7 TGEEDEEEFFCNRAK Unmodified 1859.7632 0.76320671 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 113.7 104.62 3 0.0027797 5 75920 20150910_Q1_SA_NiHu_Masterprac_group13_C 64.534 49.605 22139000 3728900 4888700 2477200 2388500 3471300 5184400 7807 945 7702 34541;34542;34543;34544;34545;34546 22822;22823;22824;22825;22826 22823 4 TGEEIFGTIGMRPNAK Unmodified 1719.8614 0.86140461 454 E9PKG1;Q99873-3;Q99873-2;G5E9B6;Q99873;H7C2I1 PRMT1 Protein arginine N-methyltransferase 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 132.94 127.97 3 0.00079235 1 87990 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.415 51.088 5817500 0 0 0 0 0 5817500 7808 454 7703 34547 22827 22827 1 TGEEINFGK Unmodified 993.47673 0.47672516 558 P49959-2;F8W7U8;P49959;B3KTC7 MRE11A Double-strand break repair protein MRE11A yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 1 1 89.006 81.157 2 0.00079776 5 55595 20150910_Q1_SA_NiHu_Masterprac_group15_B 109.44 68.012 17862000 2486900 2189500 1679700 893410 3996800 6616000 7809 558 7704 34548;34549;34550;34551;34552;34553;34554 22828;22829;22830;22831;22832 22829 5 TGETVVEEMIATRK Unmodified 1562.7974 0.79740737 1353 Q92576-2;Q92576;E7EVH3;E9PE34;B3KP41;D6R9X2 PHF3 PHD finger protein 3 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 132.99 122.64 3 1.3522E-104 3 85582 20150910_Q1_SA_NiHu_Masterprac_group10_B 147.52 98.165 90738000 0 30834000 12299000 0 5264600 42340000 7810 1353 7705 34555;34556;34557;34558 22833;22834;22835 22835 3 TGEVLHEVSNGSVVHRLCSDSCFSK Unmodified 2803.3018 0.30176104 1102 Q14202-2;Q14202-3;A6NL54;A6NHN7;Q14202;A6NHB5 ZMYM3 Zinc finger MYM-type protein 3 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 131.09 113.09 4 5.7816E-47 1 81779 20150910_Q1_SA_NiHu_Masterprac_group13_C 100.14 89.82 11427000 0 0 11427000 0 0 0 7811 1102 7706 34559 22836 22836 0 TGGADQSLQQGEGSK Unmodified 1461.6696 0.66956432 810 P09132 SRP19 Signal recognition particle 19 kDa protein yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 40.209 36.661 2 0.00020189 2 25833 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.138 61.158 2522100 0 976930 0 348020 525530 671630 7812 810 7707 34560;34561;34562;34563 22837;22838 22838 1 TGGTQTDLFTCGK Unmodified 1384.6293 0.62927941 864 P23193-2;P23193 TCEA1 Transcription elongation factor A protein 1 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 102.41 94.148 2 1.5868E-46 5 63134 20150910_Q1_SA_NiHu_Masterprac_group13_B 127.02 106.43 14109000 1231200 2409800 2586700 2268800 938150 4673800 7813 864 7708 34564;34565;34566;34567;34568;34569 22839;22840;22841;22842;22843 22839 5 TGIHTCFVCK Unmodified 1221.5634 0.56344845 1404 Q96L73-2;Q96L73-3;Q96L73 NSD1 Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 84.374 77.422 3 0.022311 1 53543 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.699 29.741 2198500 0 234950 395950 0 0 1567600 7814 1404 7709 34570;34571;34572 22844 22844 1 TGILEESMAR Unmodified 1105.5438 0.54375887 1297 Q8N3V7-2;Q8N3V7-3;Q8N3V7 SYNPO Synaptopodin yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 113.03 105.54 2 0.0088777 1 72197 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.744 46.25 8621800 1037200 1609600 1970100 547460 0 3457500 7815 1297 7710 34573;34574;34575;34576;34577 22845 22845 1 TGISDVFAK Unmodified 936.49165 0.49164694 397 E7EX81;P19338 NCL Nucleolin yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 127.15 116.93 2 0.014268 2 80428 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.264 26.009 3575600 2005500 0 0 0 0 1570100 7816 397 7711 34578;34579 22846;22847 22846 2 TGISEEAAIEENK Unmodified 1389.6624 0.66235368 1201 Q5UIP0-2;Q5UIP0;H7C2B5 RIF1 Telomere-associated protein RIF1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 89.577 87.62 2 0.006464 1 60064 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.248 40.291 1741100 0 0 0 0 0 1741100 7817 1201 7712 34580 22848 22848 1 TGISEEAAIEENKRNDDSEADTAK Unmodified 2592.1787 0.17871182 1201 Q5UIP0-2;Q5UIP0;H7C2B5 RIF1 Telomere-associated protein RIF1 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 88.015 80.337 4 0.016642 2 55162 20150910_Q1_SA_NiHu_Masterprac_group15_B 34.219 19.072 14700000 2018600 3332500 1753300 1257900 1988100 4349700 7818 1201 7713 34581;34582;34583;34584;34585;34586 22849;22850 22850 2 TGKPEEASLDSR Unmodified 1288.6259 0.62590859 38 Q9BY42;A8MSH5;A2A2L5 RTFDC1 Protein RTF2 homolog yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 46.354 40.914 3 2.201E-50 5 32977 20150910_Q1_SA_NiHu_Masterprac_group13_C 133.88 99.376 45578000 4454200 10810000 11413000 2644000 4577500 11679000 7819 38 7714 34587;34588;34589;34590;34591;34592 22851;22852;22853;22854;22855 22851 5 TGKPEEASLDSREK Unmodified 1545.7635 0.76346471 38 Q9BY42;A8MSH5;A2A2L5 RTFDC1 Protein RTF2 homolog yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 40.834 35.795 3 7.2691E-55 4 26028 20150910_Q1_SA_NiHu_Masterprac_group10_C 128.85 99.491 23460000 2379900 2645000 9067300 4277000 1740100 3350400 7820 38 7715 34593;34594;34595;34596;34597;34598 22856;22857;22858;22859 22859 4 TGLAVTVGQAK Unmodified 1043.5975 0.597509 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 1 1 2 1 1 93.765 86.697 2 0.012931 4 59264 20150910_Q1_SA_NiHu_Masterprac_group10_C 61.419 40.585 191540000 49127000 17300000 14305000 18723000 62835000 29253000 7821 383;1082 7716 34599;34600;34601;34602;34603;34604;34605;34606 22860;22861;22862;22863 22863 4 TGMYYLR Unmodified 902.43202 0.43202358 870 P23921;H0YFI0;E9PD78;E9PL69;F5H861 RRM1 Ribonucleoside-diphosphate reductase large subunit;Ribonucleoside-diphosphate reductase yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 108.28 98.856 2 0.0011071 1 70947 20150910_Q1_SA_NiHu_Masterprac_group15_C 114.02 10.737 4527600 0 1142300 0 0 3385300 0 7822 870 7717 34607;34608 22864 22864 1 TGNGQTYRGTTAETK Unmodified 1583.754 0.75396265 295 CON__P06868 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 29.762 26.436 3 0.0033053 1 18398 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.267 23.397 2673100 0 784550 1726700 161860 0 0 + 7823 295 7718 34609;34610;34611 22865 22865 1 TGPAAAQVQVGK Unmodified 1125.6142 0.6142217 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 69.342 61.271 2 4.9399E-27 5 48350 20150910_Q1_SA_NiHu_Masterprac_group15_C 123.67 74.391 8117400 1366200 0 557940 609030 2870700 2713600 7824 383;1082 7719 34612;34613;34614;34615;34616 22866;22867;22868;22869;22870 22869 5 TGPTVTQVK Unmodified 929.5182 0.51819605 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 55.719 48.249 2 0.010101 4 39537 20150910_Q1_SA_NiHu_Masterprac_group15_C 100.25 48.296 6802400 0 2621500 2064300 0 943640 1173000 7825 383;1082 7720 34617;34618;34619;34620 22871;22872;22873;22874 22873 4 TGRDTPENGETAIGAENSEK Unmodified 2074.9403 0.94031945 1298 Q8N3X1;Q8N3X1-2 FNBP4 Formin-binding protein 4 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 65.963 58.836 3 0.021912 1 48040 20150910_Q1_SA_NiHu_Masterprac_group13_C 36.454 28.369 5362600 371400 992820 1008700 738270 1384200 867190 7826 1298 7721 34621;34622;34623;34624;34625;34626 22875 22875 1 TGRVYNVTQHAVGIVVNK Unmodified 1954.0748 0.074843283 574 G3V1B3;P46778 RPL21 60S ribosomal protein L21 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 1 126.77 113.33 3;4 0.0012285 7 74999 20150910_Q1_SA_NiHu_Masterprac_group10_C 75.911 50.088 28182000 4425000 0 6948800 1767600 12260000 2780300 7827 574 7722 34627;34628;34629;34630;34631;34632;34633;34634 22876;22877;22878;22879;22880;22881;22882 22882 7 TGSGLNSFYDQR Unmodified 1343.6106 0.61059288 945 P49792;E9PGT0 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 114.19 105.2 2 8.7926E-05 4 71933 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.942 87.021 15724000 1136600 1422100 0 1658900 4963500 6542500 7828 945 7723 34635;34636;34637;34638;34639;34640 22883;22884;22885;22886 22884 4 TGSGLNSFYDQREYIGR Unmodified 1961.9232 0.92315325 945 P49792;E9PGT0 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 131.77 119.86 3 0.0018107 2 80905 20150910_Q1_SA_NiHu_Masterprac_group15_C 57.53 37.176 29452000 0 0 12761000 9996500 6695400 0 7829 945 7724 34641;34642;34643 22887;22888 22888 2 TGSLQLICK Unmodified 1018.5481 0.54811597 677 Q96JP5-2;H9KV86;Q96JP5;H3BTR0 ZFP91;ZFP91-CNTF E3 ubiquitin-protein ligase ZFP91 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 108.21 99.414 2 1.001E-54 6 71549 20150910_Q1_SA_NiHu_Masterprac_group15_C 145.9 85.075 31315000 2611000 5173400 6813100 3401000 3851200 9465000 7830 677 7725 34644;34645;34646;34647;34648;34649 22889;22890;22891;22892;22893;22894 22892 6 TGSNEFKLNQPPEDGISSVK Acetyl (Protein N-term) 2188.0648 0.064791686 719 O43684-2;O43684 BUB3 Mitotic checkpoint protein BUB3 yes no 1 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 132.77 122.57 2 0 4 81712 20150910_Q1_SA_NiHu_Masterprac_group15_C 221.51 193.86 55034000 0 0 10850000 20103000 9306700 14774000 7831 719 7726 34650;34651;34652;34653 22895;22896;22897;22898 22898 4 TGSNEFKLNQPPEDGISSVK Unmodified 2146.0542 0.054227 719 O43684-2;O43684 BUB3 Mitotic checkpoint protein BUB3 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 131.29 118.09 2;3 0 7 77027 20150910_Q1_SA_NiHu_Masterprac_group10_C 197.94 197.94 309300000 49436000 0 81551000 0 20912000 157400000 7832 719 7726 34654;34655;34656;34657;34658;34659 22899;22900;22901;22902;22903;22904;22905 22905 7 TGSPGPELLFHEGQQK Unmodified 1723.8529 0.85294842 1102 Q14202-2;Q14202-3;A6NL54;A6NHN7;Q14202;A6NHB5 ZMYM3 Zinc finger MYM-type protein 3 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 132.04 115.2 3 0.00071343 2 77908 20150910_Q1_SA_NiHu_Masterprac_group10_C 73.722 50.324 29317000 19309000 0 10008000 0 0 0 7833 1102 7727 34660;34661 22906;22907 22907 2 TGSSSLPGRPSVIPDHSK Unmodified 1820.9381 0.93807503 1576 Q9P275;Q9P275-2;E9PEW0;F5H3B9 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 2 91.833 84.205 3;4 0.00090474 11 57168 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.111 48.875 69905000 11244000 8275500 5843600 3449300 21233000 19860000 7834 1576 7728 34662;34663;34664;34665;34666;34667;34668;34669;34670;34671 22908;22909;22910;22911;22912;22913;22914;22915;22916;22917;22918 22915 11 TGSTQLFCSTR Unmodified 1256.5819 0.58193529 775 O95789-1;O95789;O95789-2;O95789-4 ZMYM6 Zinc finger MYM-type protein 6 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 96.52 84.723 2 0.017964 2 62904 20150910_Q1_SA_NiHu_Masterprac_group15_C 57.175 40.556 1918800 0 0 467580 0 661990 789190 7835 775 7729 34672;34673;34674 22919;22920 22920 1 TGTDSNSTESSETSTGSLCK Unmodified 2047.8488 0.84878683 1298 Q8N3X1;Q8N3X1-2 FNBP4 Formin-binding protein 4 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 58.689 53.545 2 0.00011528 3 40449 20150910_Q1_SA_NiHu_Masterprac_group10_C 69.081 65.331 7226700 968720 1529700 1576900 748550 0 2402800 7836 1298 7730 34675;34676;34677;34678;34679 22921;22922;22923 22923 3 TGTITTFEHAHNMR Unmodified 1614.7573 0.75727389 833 P13639;F5H370 EEF2 Elongation factor 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 87.932 80.452 3 0.0048585 1 55251 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.291 36.015 5438200 0 490390 755940 521950 1155800 2514100 7837 833 7731 34680;34681;34682;34683;34684 22924 22924 1 TGTLGSLEEPAGGASVSAGSR Unmodified 1902.9283 0.9282982 1011 P78524 ST5 Suppression of tumorigenicity 5 protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 124.99 114.81 2 0.0054564 1 76057 20150910_Q1_SA_NiHu_Masterprac_group10_C 44.743 28.56 2161500 1129600 0 0 0 0 1031900 7838 1011 7732 34685;34686 22925 22925 1 TGTLQPWNSDSTLNSR Unmodified 1775.8438 0.84384029 1479 Q9H0H5;F8VRD2;H0YIK5 RACGAP1 Rac GTPase-activating protein 1 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 128.97 120.71 2 7.1917E-12 4 84827 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.747 68.873 52595000 0 5061400 14149000 1004100 3419800 28961000 7839 1479 7733 34687;34688;34689;34690;34691 22926;22927;22928;22929 22927 4 TGTLQPWNSDSTLNSRQLEPR Unmodified 2399.1829 0.18294976 1479 Q9H0H5;F8VRD2;H0YIK5 RACGAP1 Rac GTPase-activating protein 1 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 132.29 124.14 3 8.6224E-15 2 84633 20150910_Q1_SA_NiHu_Masterprac_group10_B 90.872 67.177 65809000 38712000 27096000 0 0 0 0 7840 1479 7734 34692;34693 22930;22931 22930 2 TGTSCALDCGAGIGRITK Unmodified 1836.8822 0.88221641 1453 Q9BV86-2;Q9BV86 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 114.21 105.06 3 0.000894 3 71872 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.92 64.799 17008000 1836500 2062900 3446900 1293000 2143700 6224600 7841 1453 7735 34694;34695;34696;34697;34698;34699 22932;22933;22934 22932 2 TGTYRQLFHPEQLITGK Unmodified 1988.048 0.047959831 518 G3V1U9;Q9BQE3;Q71U36;P68363;F5H5D3;Q6PEY2;Q13748;E9PGK3;Q13748-2;F8VVB9;F8VQQ4;F8VX09;F8VWV9;F8VRZ4;F8VS66 TUBA1A;TUBA1C;TUBA1B;TUBA3E;TUBA3C Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-3E chain;Tubulin alpha-3C/D chain yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 133.12 123.82 3 0.016497 2 83920 20150910_Q1_SA_NiHu_Masterprac_group13_C 40.693 21.992 29839000 0 15996000 13843000 0 0 0 7842 518 7736 34700;34701 22935;22936 22935 2 TGVFRNQVDSETHCHAER Unmodified 2141.9661 0.96609747 1537 Q9NRW3 APOBEC3C DNA dC->dU-editing enzyme APOBEC-3C yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 1 2 3 67.741 60.512 3;4;5 1.8643E-08 9 42710 20150910_Q1_SA_NiHu_Masterprac_group10_B 93.427 70.445 520860000 5658000 88215000 31047000 5267600 29918000 360750000 7843 1537 7737 34702;34703;34704;34705;34706;34707;34708;34709;34710;34711;34712 22937;22938;22939;22940;22941;22942;22943;22944;22945 22943 9 TGVHHYSGNNIELGTACGK Unmodified 2013.9327 0.93267208 342 E5RI99;P62888 RPL30 60S ribosomal protein L30 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 4 3 3 7 5 82.519 74.263 2;3;4 2.0747E-83 27 51612 20150910_Q1_SA_NiHu_Masterprac_group10_C 130.87 107.34 7060400000 2265500000 313510000 226590000 2011500000 1835300000 408040000 7844 342 7738 34713;34714;34715;34716;34717;34718;34719;34720;34721;34722;34723;34724;34725;34726;34727;34728;34729;34730;34731;34732;34733;34734;34735;34736;34737;34738;34739;34740;34741;34742;34743 22946;22947;22948;22949;22950;22951;22952;22953;22954;22955;22956;22957;22958;22959;22960;22961;22962;22963;22964;22965;22966;22967;22968;22969;22970;22971;22972 22971 26 TGVHHYSGNNIELGTACGKYYR Unmodified 2496.1604 0.16044018 342 E5RI99;P62888 RPL30 60S ribosomal protein L30 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 102.04 92.902 4 4.9343E-06 4 62797 20150910_Q1_SA_NiHu_Masterprac_group10_C 63.447 54.195 16069000 6863900 0 0 5358400 3846600 0 7845 342 7739 34744;34745;34746 22973;22974;22975;22976 22974 4 TGYGGGFNERENVEYIER Unmodified 2088.9501 0.95009628 765 O95218-2;O95218 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 130.22 112.47 3 0.011072 1 79414 20150910_Q1_SA_NiHu_Masterprac_group15_C 41.359 16.879 8160900 0 0 0 0 8160900 0 7846 765 7740 34747 22977 22977 1 TGYTLDVTTGQRK Unmodified 1438.7416 0.74160705 731;715 O43390;O43390-2;E7ETM7;F6UXX1;O60506-2;O60506;O60506-4;O60506-3 HNRNPR;SYNCRIP Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 92.633 84.838 3 0.0096764 4 62919 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.356 38.904 16806000 1149900 4755000 1462300 1283400 3667400 4487600 7847 715;731 7741 34748;34749;34750;34751;34752;34753 22978;22979;22980;22981 22980 4 THAVLVALK Unmodified 950.5913 0.59130141 876 P25786;P25786-2;F5GX11;B4DEV8 PSMA1 Proteasome subunit alpha type-1;Proteasome subunit alpha type yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 94.04 86.194 2 0.0064563 6 59127 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.867 66.059 15506000 1321100 2237600 2760500 1437200 2419000 5330500 7848 876 7742 34754;34755;34756;34757;34758;34759 22982;22983;22984;22985;22986;22987 22984 6 THEDIEAQIR Unmodified 1210.5942 0.59421454 746 O75533;F8WC19;E9PCH3;B4DGZ4 SF3B1 Splicing factor 3B subunit 1 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 2 2 75.297 67.194 2;3 0.0031326 5 46817 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.549 80.178 14742000 1587000 3797900 1380300 446310 3126400 4404200 7849 746 7743 34760;34761;34762;34763;34764;34765;34766;34767;34768;34769;34770 22988;22989;22990;22991;22992 22989 5 THEDIEAQIREIQGK Unmodified 1765.8959 0.89587586 746 O75533;F8WC19;E9PCH3;B4DGZ4 SF3B1 Splicing factor 3B subunit 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 125.25 115.77 3 2.6406E-229 3 76333 20150910_Q1_SA_NiHu_Masterprac_group10_C 175.29 152.93 41545000 21990000 2993800 9835800 1580500 1199000 3946700 7850 746 7744 34771;34772;34773;34774;34775;34776 22993;22994;22995 22995 2 THEMEPAEAIETPLLPHQK Unmodified 2170.0729 0.072853952 1107 Q14527;Q14527-2;E7ESN4;F5H3D6 HLTF Helicase-like transcription factor yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.13 131.53 4 0.00099653 1 84978 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.197 42.375 5240400 0 5240400 0 0 0 0 7851 1107 7745 34777 22996 22996 0 THHNDTELIRK Unmodified 1362.7004 0.70041094 129 F8W720;B4DUT7;P49915 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 29.569 27.661 3 0.023536 1 19638 20150910_Q1_SA_NiHu_Masterprac_group10_B 46.796 27.534 444070 0 444070 0 0 0 0 7852 129 7746 34778 22997 22997 1 THINIVVIGHVDSGK Unmodified 1587.8733 0.87328993 1006 Q5VTE0;P68104;Q6IQ15;F8W6I0;Q05639;A6PW80;Q5JR01;E7EPH7 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 17 7 14 3 8 127.91 122.02 2;3 2.8523E-70 35 76120 20150910_Q1_SA_NiHu_Masterprac_group13_B 132.15 110.34 499790000 116360000 179370000 68943000 58542000 39641000 36939000 7853 1006 7747 34779;34780;34781;34782;34783;34784;34785;34786;34787;34788;34789;34790;34791;34792;34793;34794;34795;34796;34797;34798;34799;34800;34801;34802;34803;34804;34805;34806;34807;34808;34809;34810;34811;34812;34813;34814;34815;34816;34817;34818;34819;34820;34821;34822;34823;34824;34825;34826;34827;34828;34829;34830;34831;34832 22998;22999;23000;23001;23002;23003;23004;23005;23006;23007;23008;23009;23010;23011;23012;23013;23014;23015;23016;23017;23018;23019;23020;23021;23022;23023;23024;23025;23026;23027;23028;23029;23030;23031;23032 22999 32 THLPGRTYSCPDCGK Unmodified 1747.777 0.77702306 646 H3BS42;Q9H5H4;B7Z2Y7 ZNF768 Zinc finger protein 768 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 3 1 2 2 1 64.756 55.209 3;4 0.0085816 4 44817 20150910_Q1_SA_NiHu_Masterprac_group15_C 48.467 34.602 15230000 2932500 2246300 2573300 0 3263700 4214500 7854 646 7748 34833;34834;34835;34836;34837;34838;34839;34840;34841 23033;23034;23035;23036 23034 2 THLSLSHQPDK Unmodified 1261.6415 0.64149908 1235 Q6UB35;Q4VXM1;Q4VXM0 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 46.74 42.904 3 0.01646 1 34968 20150910_Q1_SA_NiHu_Masterprac_group13_C 55.98 35.693 2013000 0 608510 688210 292790 0 423520 7855 1235 7749 34842;34843;34844;34845 23037 23037 1 THQIRAALAPAK Unmodified 1275.7412 0.74115354 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;H0YAB7;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 53.456 47.415 3 0.0014667 5 40934 20150910_Q1_SA_NiHu_Masterprac_group13_C 91.123 65.111 17556000 892750 5068900 2332000 2629300 4374100 2258500 7856 383;1082 7750 34846;34847;34848;34849;34850;34851 23038;23039;23040;23041;23042 23039 5 THRGEQPPRPVVPR Unmodified 1624.891 0.89100568 1408 Q96MX3 ZNF48 Zinc finger protein 48 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 55.977 50.98 4 0.022721 1 36243 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.03 26.68 3091400 0 0 0 609250 962300 1519900 7857 1408 7751 34852;34853;34854 23043 23043 1 THSGEKPFLCPR Unmodified 1427.698 0.6979681 1401 Q96K58;C9JHH8 ZNF668 Zinc finger protein 668 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 60.018 58.863 3 0.022061 1 41552 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.252 14.835 917740 0 0 0 0 0 917740 7858 1401 7752 34855 23044 23044 1 THSVPATPTSTPVPNPEAESSSK Unmodified 2320.1183 0.11828382 169 Q96FF9;B5MBX0 CDCA5 Sororin yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 104.37 95.875 3 3.2744E-10 4 65090 20150910_Q1_SA_NiHu_Masterprac_group10_C 79.029 71.334 28128000 10657000 2464300 1677100 3214100 6058800 4056400 7859 169 7753 34856;34857;34858;34859;34860;34861 23045;23046;23047;23048 23048 3 THTGEKPYECTHCGK Unmodified 1803.7669 0.7668523 1309 Q8N8Y5 ZFP41 Zinc finger protein 41 homolog yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 23.408 20.787 3;4 0.032077 3 13942 20150910_Q1_SA_NiHu_Masterprac_group10_B 39.629 15.404 2051100 0 991200 667500 392440 0 0 7860 1309 7754 34862;34863;34864;34865 23049;23050;23051 23051 3 THTGERPFACDWQGCDKK Unmodified 2191.9528 0.95275559 1462 Q9BXK1 KLF16 Krueppel-like factor 16 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 87.567 76.137 4 0.003755 1 52403 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.916 23.925 3290900 0 0 916520 0 736200 1638200 7861 1462 7755 34866;34867;34868 23052 23052 1 THTGERPYKCPECGK Unmodified 1818.8141 0.81413685 1586 Q9UEG4 ZNF629 Zinc finger protein 629 yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 58.044 51.55 4 0.017686 1 42324 20150910_Q1_SA_NiHu_Masterprac_group15_C 42.682 16.704 4929800 582230 636590 802980 604900 854620 1448500 7862 1586 7756 34869;34870;34871;34872;34873;34874 23053 23053 1 THTITIESEGK Unmodified 1214.6143 0.61428128 1578 Q9P2D1 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 55.234 54.18 3 0.0034521 1 38501 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.513 46.755 1363800 0 0 0 0 0 1363800 7863 1578 7757 34875 23054 23054 1 THTMGGDFSGKNQDCSK Unmodified 1868.7781 0.77814527 403;686 O00139-1;E9PB70;O00139;O00139-4;O00139-2 KIF2A Kinesin-like protein KIF2A no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 40.482 39.628 4 0.033107 1 28072 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.352 29.622 809830 0 0 0 0 0 809830 7864 403;686 7758 34876 23055 23055 1 THTMLGSPEQPGVIPR Oxidation (M) 1734.8723 0.87230365 1115 Q14807;B7Z265;H3BRB3;H3BTH5 KIF22 Kinesin-like protein KIF22 yes no 0 1 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 105.8 98.5 3 0.0088814 1 67177 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.794 35.851 3801700 0 840300 0 0 457280 2504200 7865 1115 7759 34877;34878;34879 23056 23056 138 1 THTMLGSPEQPGVIPR Unmodified 1718.8774 0.87738903 1115 Q14807;B7Z265;H3BRB3;H3BTH5 KIF22 Kinesin-like protein KIF22 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 1 1 1 2 125.9 114.87 2;3 0.0004229 5 75919 20150910_Q1_SA_NiHu_Masterprac_group10_C 82.483 63.212 28916000 7488500 3111700 4001200 0 1361200 12954000 7866 1115 7759 34880;34881;34882;34883;34884;34885;34886 23057;23058;23059;23060;23061 23061 5 THTMTGSPGEGGLLPR Unmodified 1609.7882 0.78823967 660 Q02241-2;H7BYN4;Q02241;H0YME6 KIF23 Kinesin-like protein KIF23 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 109.35 99.421 3 0.0025442 1 67688 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.212 47.269 7353900 0 1443800 1418800 0 660420 3830800 7867 660 7760 34887;34888;34889;34890 23062 23062 1 TIAATPIQTLPQSQSTPK Unmodified 1881.0207 0.020742027 627 H0YLB5;P14859-4;P14859-5;P14859-3;P14859;P14859-2 POU2F1 POU domain, class 2, transcription factor 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 130.61 125.65 2 9.4809E-22 1 85414 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.9 83.965 3398900 0 0 0 0 0 3398900 7868 627 7761 34891 23063 23063 1 TIAECLADELINAAK Unmodified 1630.8236 0.82362212 927 P46782 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 134.13 129.17 2 0.015705 1 89383 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.746 52.624 0 0 0 0 0 0 0 7869 927 7762 34892 23064 23064 1 TIAEQLAEK Unmodified 1001.5393 0.53932542 1243 Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 89.247 80.013 2 0.0043552 1 60027 20150910_Q1_SA_NiHu_Masterprac_group15_C 105.2 48.279 7309800 1251300 1844700 557320 0 1414300 2242100 7870 1243 7763 34893;34894;34895;34896;34897 23065 23065 1 TIAPQNAPR Unmodified 966.52468 0.52467841 1563;452 Q9NYF8-2;Q9NYF8;Q9NYF8-4;E9PK09;E9PQN2;E9PKI6;E9PJA7;H0YF00;Q9NYF8-3;E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 53.441 47.316 2 0.0061789 5 33326 20150910_Q1_SA_NiHu_Masterprac_group13_B 104.06 67.61 32112000 3239300 4472200 7014700 3105900 5633400 8646800 7871 1563;452 7764 34898;34899;34900;34901;34902;34903 23066;23067;23068;23069;23070 23066 5 TIAPQNAPRDESR Unmodified 1453.7274 0.72735397 1563;452 Q9NYF8-2;Q9NYF8;Q9NYF8-4;E9PK09;E9PQN2;E9PKI6;E9PJA7;H0YF00;Q9NYF8-3;E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 3 2 2 2 2 2 49.291 43.51 2;3 0.01906 3 37143 20150910_Q1_SA_NiHu_Masterprac_group15_C 58.32 35.782 75319000 13703000 6402600 11615000 11671000 13794000 18133000 7872 1563;452 7765 34904;34905;34906;34907;34908;34909;34910;34911;34912;34913;34914;34915;34916 23071;23072;23073 23072 3 TIAQDYGVLK Unmodified 1106.5972 0.59717465 1044 Q06830 PRDX1 Peroxiredoxin-1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 113.49 111.43 2 0.010239 1 72930 20150910_Q1_SA_NiHu_Masterprac_group10_B 73.841 48.715 16125000 0 4156800 0 2951200 0 9016900 7873 1044 7766 34917;34918;34919 23074 23074 1 TIDVFDGNSGK Unmodified 1151.5459 0.54586736 1347 Q92466-2;Q92466-4;Q92466 DDB2 DNA damage-binding protein 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 107.82 99.027 2 2.7392E-05 8 65992 20150910_Q1_SA_NiHu_Masterprac_group10_B 103.43 70.243 14600000 566030 3438200 2607700 646880 2419100 4921700 7874 1347 7767 34920;34921;34922;34923;34924;34925 23075;23076;23077;23078;23079;23080;23081;23082 23081 7 TIEYLQPNPASR Unmodified 1387.7096 0.70957864 1435 Q99961;F5H5J3;Q99962 SH3GL1;SH3GL2 Endophilin-A2;Endophilin-A1 yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 119.96 106.99 2 0.0056833 2 75806 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.662 47.637 5801700 0 0 789390 0 1807000 3205200 7875 1435 7768 34926;34927;34928 23083;23084 23084 2 TIFFKDDGNYK Unmodified 1346.6507 0.65066678 310 CON__Q9U6Y5 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 106.32 104.91 3 0.012541 1 69168 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.166 44.093 1648300 0 1648300 0 0 0 0 + 7876 310 7769 34929 23085 23085 1 TIFFKDDGNYKTR Unmodified 1603.7995 0.79945628 310 CON__Q9U6Y5 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 103.77 93.84 4 0.017948 1 64103 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.532 37.487 2153500 0 0 1586400 0 0 567060 + 7877 310 7770 34930;34931 23086 23086 1 TIFVLTK Unmodified 820.50584 0.50584045 336 O60313;E5KLK1;E5KLJ6;E5KLJ9;O60313-2;E5KLJ5 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 131.79 120.43 2 6.1497E-21 2 85847 20150910_Q1_SA_NiHu_Masterprac_group15_B 132.57 58.152 13076000 0 0 0 0 3012200 10064000 7878 336 7771 34932;34933 23087;23088 23087 2 TIGVKHPELCK Unmodified 1280.6911 0.69109181 1295 Q8N2W9 PIAS4 E3 SUMO-protein ligase PIAS4 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 70.494 63.335 3 0.0059731 1 44117 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.942 41.879 11622000 0 1239200 1729000 498800 1742100 6412900 7879 1295 7772 34934;34935;34936;34937;34938 23089 23089 1 TIIFSIHQPR Unmodified 1210.6822 0.68224168 1616 Q9UNQ0-2;Q9UNQ0 ABCG2 ATP-binding cassette sub-family G member 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 130.58 125.62 3 0.0071062 1 85351 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.95 60.294 2361500 0 0 0 0 0 2361500 7880 1616 7773 34939 23090 23090 1 TIIFVETK Unmodified 949.54843 0.54843354 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 127.1 117.64 2 5.4178E-49 5 80606 20150910_Q1_SA_NiHu_Masterprac_group15_C 143.73 101.34 81793000 10348000 10394000 14927000 2317200 10802000 33005000 7881 1361;629 7774 34940;34941;34942;34943;34944;34945 23091;23092;23093;23094;23095 23093 5 TIIGQQGDQSCANK Unmodified 1518.7097 0.709655 896 P35251-2;P35251 RFC1 Replication factor C subunit 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 58.818 52.258 2 2.8258E-71 5 37394 20150910_Q1_SA_NiHu_Masterprac_group15_B 136.83 123.68 15522000 2843500 2786100 1941400 1274900 242860 6433300 7882 896 7775 34946;34947;34948;34949;34950;34951 23096;23097;23098;23099;23100 23098 5 TIIQNPTDQQK Unmodified 1284.6674 0.66737948 536 F8VR77;F8VRZ3;F8VTY8;Q9UQ80;H0Y3X3 PA2G4 Proliferation-associated protein 2G4 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 77.881 70.37 2 6.1909E-05 3 48902 20150910_Q1_SA_NiHu_Masterprac_group15_B 100.93 66.158 9750100 1275500 1383100 1750700 1675100 2171100 1494600 7883 536 7776 34952;34953;34954;34955;34956;34957 23101;23102;23103 23102 3 TIKVSYARPSSEVIK Unmodified 1676.9461 0.94612052 1146 Q15717 ELAVL1 ELAV-like protein 1 yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 101.37 94.155 4 0.019046 1 62937 20150910_Q1_SA_NiHu_Masterprac_group10_B 41.996 24.129 5052200 0 1955700 1210600 0 0 1885900 7884 1146 7777 34958;34959;34960 23104 23104 1 TILNLENSNK Unmodified 1144.6088 0.60880197 1285 Q8IX12-2;Q8IX12 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 104.03 98.553 2 0.021394 1 65567 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.466 21.303 2680500 0 901760 0 186290 379680 1212800 7885 1285 7778 34961;34962;34963;34964 23105 23105 1 TINDIFKHEK Unmodified 1243.6561 0.65608651 1117 Q14865-2;Q14865 ARID5B AT-rich interactive domain-containing protein 5B yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 92.517 85.614 3 0.020306 1 58736 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.694 50.294 2959000 0 577340 0 0 705630 1676100 7886 1117 7779 34965;34966;34967 23106 23106 1 TINLTDRQVK Unmodified 1186.667 0.66698555 1562 Q9NYD6 HOXC10 Homeobox protein Hox-C10 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 77.117 69.606 2 0.019021 1 53849 20150910_Q1_SA_NiHu_Masterprac_group15_C 84.507 41.531 14345000 1307400 1115100 2525700 1284800 2866700 5245400 7887 1562 7780 34968;34969;34970;34971;34972;34973 23107 23107 1 TIQAVGECEQSESSAFK Unmodified 1869.8415 0.84145703 506 F5H0W5;Q9BR77-2;Q9BR77 CCDC77 Coiled-coil domain-containing protein 77 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 110.41 102.79 2 0.0040977 1 70206 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.907 35.042 2440900 0 559200 623790 0 0 1257900 7888 506 7781 34974;34975;34976 23108 23108 1 TIQAVGECEQSESSAFKADPK Unmodified 2281.0532 0.053240722 506 F5H0W5;Q9BR77-2;Q9BR77 CCDC77 Coiled-coil domain-containing protein 77 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 106.39 100.73 3 0.0089476 2 68944 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.31 41.31 9088700 0 2694200 2486400 883330 0 3024800 7889 506 7782 34977;34978;34979;34980 23109;23110 23110 2 TIQDGDSDELTIK Unmodified 1433.6886 0.68856843 516 Q9Y4C1;F5H4E6;F5H070 KDM3A Lysine-specific demethylase 3A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 101.65 98.593 2 0.0061065 2 67269 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.709 34.474 1168900 0 0 0 0 0 1168900 7890 516 7783 34981 23111;23112 23112 2 TIQTPIGSTWNTQR Unmodified 1601.8162 0.81616898 425 E9PEL7;Q9BVJ6;Q9BVJ6-2;F8WD00;Q5TAP6 UTP14A;UTP14C U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.11 130.51 2 0.0056126 1 83933 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.66 31.245 2760100 0 2760100 0 0 0 0 7891 425 7784 34982 23113 23113 1 TIQVPQQK Unmodified 940.53418 0.53418046 1465 Q9BY77;F8WCX5 POLDIP3 Polymerase delta-interacting protein 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 65.375 56.886 2 0.03217 1 40515 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.525 8.0606 8856200 1629200 2406500 4820500 0 0 0 7892 1465 7785 34983;34984;34985 23114 23114 1 TISHVIIGLK Unmodified 1079.6703 0.67028001 1629 Q9Y265;Q9Y265-2;E7ETR0 RUVBL1 RuvB-like 1 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 128.34 111.62 2 4.1985E-05 1 73919 20150910_Q1_SA_NiHu_Masterprac_group10_C 109.29 59.872 1577600 1028600 0 0 0 549020 0 7893 1629 7786 34986;34987 23115 23115 1 TIVEAASDEER Unmodified 1218.5728 0.57281039 1558 Q9NWY4 C4orf27 UPF0609 protein C4orf27 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 74.393 65.419 2 0.026665 1 45664 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.326 52.818 4145000 0 995770 499980 0 573690 2075600 7894 1558 7787 34988;34989;34990;34991 23116 23116 0 TIVFVETK Unmodified 935.53278 0.53278348 853 P17844;E7ETL9 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 116.12 106.42 2 0.031186 1 72531 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.816 39.286 80782000 0 0 6556700 8496500 19597000 46131000 7895 853 7788 34992;34993;34994;34995 23117 23117 1 TIYSSYQLAALQRR Unmodified 1668.8948 0.89475365 730 O60479;F8VXG1 DLX3 Homeobox protein DLX-3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 131.79 126.83 3 0.01967 1 86709 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.73 13.139 7589900 0 0 0 0 0 7589900 7896 730 7789 34996 23118 23118 1 TKDHTLVQTIAR Unmodified 1381.7678 0.76776223 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 75.764 68.216 3 1.2144E-117 6 53395 20150910_Q1_SA_NiHu_Masterprac_group15_C 156.52 122.33 91168000 10209000 11031000 6368400 7286600 21537000 34736000 7897 1111 7790 34997;34998;34999;35000;35001;35002;35003 23119;23120;23121;23122;23123;23124 23122 6 TKENVNATENCISAVGK Unmodified 1833.8891 0.88907593 155 B4E0R6;O00410-2;O00410;H0Y8C6;O00410-3 IPO5 Importin-5 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 84.787 78.671 3 0.013812 2 54314 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.257 24.371 3629200 0 0 1368200 824520 0 1436600 7898 155 7791 35004;35005;35006 23125;23126 23126 2 TKEQILEEFSK Unmodified 1350.7031 0.70309628 731 O60506-2;O60506;O60506-4;O60506-3;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 118.94 113.63 3 0.014268 1 77523 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.157 26.568 6749600 1916700 1306000 0 1053100 0 2473800 7899 731 7792 35007;35008;35009;35010 23127 23127 1 TKFNVATQNVSTLSSK Unmodified 1723.9105 0.9104633 142 B4DY82;Q96HI0 SENP5 Sentrin-specific protease 5 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 70.254 62.084 3 0.0064128 1 44863 20150910_Q1_SA_NiHu_Masterprac_group10_C 47.506 27.813 1617500 1617500 0 0 0 0 0 7900 142 7793 35011 23128 23128 1 TKGHLDAELDAYMAQTDPETND Unmodified 2434.0594 0.059448312 1649 Q9Y3Y2-4;Q9Y3Y2;Q9Y3Y2-3 CHTOP Chromatin target of PRMT1 protein yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 132.76 132.46 3 1.1866E-06 1 85801 20150910_Q1_SA_NiHu_Masterprac_group13_B 78.418 69.483 10301000 0 4793700 0 5507000 0 0 7901 1649 7794 35012;35013 23129 23129 1 TKGIEVGHTFYLGTK Unmodified 1649.8777 0.8777066 1245 Q7L3T8 PARS2 Probable proline--tRNA ligase, mitochondrial yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 124.1 119.34 3 0.0016644 1 81019 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.283 44.402 4873600 0 0 0 0 0 4873600 7902 1245 7795 35014 23130 23130 1 TKIKADPDGPEAQAEACSGER Unmodified 2229.0332 0.033173982 323 D6RC52;D6RCB9;Q9NX24 NHP2 H/ACA ribonucleoprotein complex subunit 2 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 3 2 2 2 2 74.528 67.425 3;4 1.1783E-05 11 46788 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.66 63.394 40295000 14875000 3830900 4362600 3014000 10971000 3241500 7903 323 7796 35015;35016;35017;35018;35019;35020;35021;35022;35023;35024;35025;35026;35027 23131;23132;23133;23134;23135;23136;23137;23138;23139;23140;23141 23133 10 TKPKEDCLLGSAK Unmodified 1445.7548 0.75481428 238 C9JA69;Q8WY36-2;Q8WY36 BBX HMG box transcription factor BBX yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 56.649 51.097 3 0.0036771 1 41851 20150910_Q1_SA_NiHu_Masterprac_group13_C 77.74 57.634 3716800 307260 0 1255600 724610 0 1429300 7904 238 7797 35028;35029;35030;35031 23142 23142 1 TKSDSGTAAQTSLDIDKNEK Unmodified 2108.0233 0.023320802 535 Q96RL1;F8VQY2;Q96RL1-3;F2Z2T8;Q96RL1-2;Q96RL1-4;H7BXP9 UIMC1 BRCA1-A complex subunit RAP80 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 2 69.936 62.659 3 0.0092044 2 50545 20150910_Q1_SA_NiHu_Masterprac_group13_C 48.196 48.196 7272500 1195800 1656100 2030100 1026900 628590 734960 7905 535 7798 35032;35033;35034;35035;35036;35037;35038 23143;23144 23143 2 TKVADPGPASTGSNTTASDSLGGSVPK Unmodified 2501.2245 0.22453981 1357 Q92766-3;Q92766;Q92766-2 RREB1 Ras-responsive element-binding protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 101.4 94.225 3 0.012742 1 64469 20150910_Q1_SA_NiHu_Masterprac_group15_B 32.962 27.665 5786600 0 1178200 0 0 2608500 1999900 7906 1357 7799 35039;35040;35041 23145 23145 1 TKVGDGDLSAEEIPENEVSLRR Unmodified 2413.2085 0.20849581 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 2 1 130.26 126.03 3;4 0.001624 3 77042 20150910_Q1_SA_NiHu_Masterprac_group10_C 50.916 33.486 29562000 10099000 12885000 0 6577300 0 0 7907 1111 7800 35042;35043;35044;35045 23146;23147;23148 23148 3 TKYPTQSGKPPLLVSAPSK Unmodified 1998.115 0.11497676 588 G3V529;Q9GZR7;Q4V9L5;F5GYL3;F5H4V3 DDX24 ATP-dependent RNA helicase DDX24 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 108.36 101.19 4 0.00052823 2 69115 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.969 60.728 8298600 910850 1430400 1256700 849180 0 3851500 7908 588 7801 35046;35047;35048;35049;35050 23149;23150 23150 1 TLAMLDEEPKTK Unmodified 1374.7065 0.7064671 896 P35251-2;P35251 RFC1 Replication factor C subunit 1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 105.79 97.281 3 0.0088439 2 64759 20150910_Q1_SA_NiHu_Masterprac_group10_B 60.301 32.873 6982000 638260 1996100 1233300 0 0 3114400 7909 896 7802 35051;35052;35053;35054 23151;23152 23152 2 TLATWATK Unmodified 890.48617 0.48616764 1119 Q14974;F5H4R7;B7ZAV6 KPNB1 Importin subunit beta-1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 95.682 88.087 2 0.012377 2 60472 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.601 3.4197 26856000 1835500 4744300 0 0 6219100 14057000 7910 1119 7803 35055;35056;35057;35058 23153;23154 23153 2 TLAVSGLGVVGRDK Unmodified 1370.7882 0.78816332 655 P11388;H7BXX8;P11388-2;P11388-3;P11388-4;C9J5P2;H7BXH5 TOP2A DNA topoisomerase 2-alpha yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 2 124.06 117.5 3 8.7899E-06 4 76774 20150910_Q1_SA_NiHu_Masterprac_group10_B 94.688 58.271 34230000 0 4259900 19230000 2134700 2026000 6580000 7911 655 7804 35059;35060;35061;35062;35063;35064;35065 23155;23156;23157;23158 23158 4 TLCLSTPSSSTVK Unmodified 1379.6966 0.6966307 464 Q03164-2;Q03164;E9PQG7;E9PR05 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 108.36 101.3 2 0.0057992 2 69146 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.157 28.168 3432400 0 0 883970 814010 0 1734500 7912 464 7805 35066;35067;35068 23159;23160 23160 2 TLEEDVDDRAPSK Unmodified 1473.6947 0.69471644 1092 Q13823 GNL2 Nucleolar GTP-binding protein 2 yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 79.177 71.666 3 1.7753E-05 3 49660 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.368 62.048 6543100 591930 1574400 718790 655790 1373100 1629100 7913 1092 7806 35069;35070;35071;35072;35073;35074 23161;23162;23163 23161 3 TLEEIKLEK Unmodified 1101.6281 0.62814043 97 B4DLG2;O75152;E9PQ61;E9PBY7 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 99.895 92.049 2 4.6159E-127 5 63135 20150910_Q1_SA_NiHu_Masterprac_group15_B 167.67 53.967 22471000 5033700 4314100 0 0 6006000 7117200 7914 97 7807 35075;35076;35077;35078 23164;23165;23166;23167;23168 23164 5 TLEEPVSTEK Unmodified 1131.5659 0.5659341 547 Q99590-2;F8VXG7;Q99590 SCAF11 Protein SCAF11 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 70.596 63.602 2 0.02416 1 46150 20150910_Q1_SA_NiHu_Masterprac_group10_C 60.167 40.037 1844400 579150 420550 0 0 509290 335420 7915 547 7808 35079;35080;35081;35082 23169 23169 1 TLEEPVSTEKNIG Unmodified 1415.7144 0.71438925 547 Q99590-2;F8VXG7;Q99590 SCAF11 Protein SCAF11 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 101.49 93.264 2 0.00052413 4 63613 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.202 51.622 35266000 5183800 5142900 5497600 4582700 5736500 9123000 7916 547 7809 35083;35084;35085;35086;35087;35088 23170;23171;23172;23173 23171 2 TLEEQGVAHNVK Unmodified 1323.6783 0.67827852 234 C9J7X7;C9JRT6;F8WDB6;Q9Y5A7-2;Q9Y5A7;H3BM14;H3BM74 NUB1 NEDD8 ultimate buster 1 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 60.42 53.031 3 0.0055766 1 37456 20150910_Q1_SA_NiHu_Masterprac_group13_B 62.528 34.974 2389200 380980 0 467490 294940 735180 510630 7917 234 7810 35089;35090;35091;35092;35093 23174 23174 1 TLEGELHDLRGQVAK Unmodified 1664.8846 0.8845829 783 P02545;P02545-3;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q3BDU5;Q5TCJ4;Q5TCI8;H0YAB0 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 131.41 115.72 3 0.0032385 1 77029 20150910_Q1_SA_NiHu_Masterprac_group10_C 57.434 33.5 6303400 6303400 0 0 0 0 0 7918 783 7811 35094 23175 23175 1 TLENSPISSCDTSDTEGPVPVNSAAVLKK Unmodified 3015.4707 0.47066009 423 Q8N556;E9PDT7 AFAP1 Actin filament-associated protein 1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 132.82 117.13 3 2.603E-30 1 78566 20150910_Q1_SA_NiHu_Masterprac_group10_C 86.248 70.284 36203000 36203000 0 0 0 0 0 7919 423 7812 35095 23176 23176 1 TLEQLAQQGK Unmodified 1114.5982 0.59823728 1580 Q9P2W1;Q9P2W1-2 PSMC3IP Homologous-pairing protein 2 homolog yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 88.624 80.929 2 3.8524E-06 4 60442 20150910_Q1_SA_NiHu_Masterprac_group15_C 112.71 62.259 15748000 1263600 1334100 1081200 759420 5481100 5828400 7920 1580 7813 35096;35097;35098;35099;35100;35101 23177;23178;23179;23180 23178 4 TLEQLAQQGKIKEK Unmodified 1612.9148 0.91482039 1580 Q9P2W1;Q9P2W1-2 PSMC3IP Homologous-pairing protein 2 homolog yes no 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 92.234 83.985 3;4 0.0016638 5 62432 20150910_Q1_SA_NiHu_Masterprac_group15_C 66.784 44.687 23572000 4723700 1483600 3577500 2902500 6408300 4476900 7921 1580 7814 35102;35103;35104;35105;35106;35107;35108;35109;35110;35111;35112 23181;23182;23183;23184;23185 23185 5 TLESQAVETEK Unmodified 1233.6089 0.60886155 498 F5GZ79;Q9NVX2 NLE1 Notchless protein homolog 1 yes no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 70.634 63.475 2 0.0008967 3 44539 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.839 65.662 3694200 0 610560 515290 437760 930110 1200500 7922 498 7815 35113;35114;35115;35116;35117 23186;23187;23188 23187 3 TLETLIR Unmodified 844.50182 0.5018177 873 P25205;Q7Z6P5;E9PF11 MCM3 DNA replication licensing factor MCM3 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 118.96 110.87 2 0.0036488 2 75933 20150910_Q1_SA_NiHu_Masterprac_group15_B 107.32 25.077 33828000 0 4983400 3425500 0 0 25419000 7923 873 7816 35118;35119;35120 23189;23190 23190 1 TLETVPLER Unmodified 1056.5815 0.58152458 863 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 111.33 103.26 2 0.011764 1 73644 20150910_Q1_SA_NiHu_Masterprac_group15_C 82.645 25.835 11060000 0 2834900 1125800 1144600 1893600 4060700 7924 863 7817 35121;35122;35123;35124;35125 23191 23191 1 TLFQPQTGAYQTLAK Unmodified 1665.8726 0.87262123 354 E7EP00;G5EA31;P53992 SEC24C Protein transport protein Sec24C yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.96 132.35 2 0.023982 1 85949 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.288 37.164 26475000 0 26475000 0 0 0 0 7925 354 7818 35126 23192 23192 0 TLGDFAAEYAK Unmodified 1184.5714 0.57135383 815 P09874;F8WC10 PARP1 Poly [ADP-ribose] polymerase 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 132.7 122 2 4.4886E-13 7 87290 20150910_Q1_SA_NiHu_Masterprac_group15_B 117.09 82.905 685160000 162020000 175980000 94435000 123430000 43347000 85951000 7926 815 7819 35127;35128;35129;35130;35131;35132;35133 23193;23194;23195;23196;23197;23198;23199 23196 7 TLGETSANAETEQNK Unmodified 1591.7326 0.73255851 1201 Q5UIP0-2;Q5UIP0 RIF1 Telomere-associated protein RIF1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 55.572 49.475 2 0.0023049 3 35261 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.568 53.728 5175400 0 900980 1209200 363910 771960 1929300 7927 1201 7820 35134;35135;35136;35137;35138 23200;23201;23202 23202 3 TLGETSANAETEQNKK Unmodified 1719.8275 0.82752153 1201 Q5UIP0-2;Q5UIP0 RIF1 Telomere-associated protein RIF1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 46.384 40.945 3 8.6228E-52 7 33118 20150910_Q1_SA_NiHu_Masterprac_group13_C 124.62 95.635 23088000 1748100 3556500 4848700 2070000 3762700 7102100 7928 1201 7821 35139;35140;35141;35142;35143;35144 23203;23204;23205;23206;23207;23208;23209 23204 7 TLGETSANAETEQNKKK Unmodified 1847.9225 0.92248455 1201 Q5UIP0-2;Q5UIP0 RIF1 Telomere-associated protein RIF1 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 37.561 32.873 3 0.035332 1 27798 20150910_Q1_SA_NiHu_Masterprac_group15_C 42.314 32.756 17548000 1915700 3513900 5649100 1450300 1091200 3928100 7929 1201 7822 35145;35146;35147;35148;35149;35150 23210 23210 1 TLGTPTQPGSTPR Unmodified 1311.6783 0.67827852 144 B4DYB4;Q8NFH5;B4DP57 NUP35 Nucleoporin NUP53 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 74.91 67.631 2 0.014367 2 47039 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.008 3.4402 7344200 0 1223400 154570 332450 1493900 4139900 7930 144 7823 35151;35152;35153;35154;35155 23211;23212 23211 2 TLGVQRPK Unmodified 897.5396 0.53960019 682 I3L1L3;Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 48.441 41.12 2 0.038407 1 29329 20150910_Q1_SA_NiHu_Masterprac_group10_B 87.323 55.901 1045900 0 836710 0 0 209150 0 7931 682 7824 35156;35157 23213 23213 1 TLGVQRPKLEK Unmodified 1267.7612 0.76122028 682 I3L1L3;Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 75.614 68.314 3 0.00081668 2 54694 20150910_Q1_SA_NiHu_Masterprac_group13_C 102.05 78.371 27598000 0 627410 5526000 3893100 10439000 7112500 7932 682 7825 35158;35159;35160;35161;35162 23214;23215 23214 0 TLKEENMQQAR Unmodified 1346.6612 0.66124824 1546 Q9NUQ3;Q9NUQ3-2 TXLNG Gamma-taxilin yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 44.173 40.132 3 0.00075282 1 32434 20150910_Q1_SA_NiHu_Masterprac_group13_C 94.465 67.679 3501200 650890 469400 1515300 411970 0 453580 7933 1546 7826 35163;35164;35165;35166;35167 23216 23216 1 TLKNDCEENGLAK Unmodified 1490.7035 0.70350699 720 O43719;E9PFP2 HTATSF1 HIV Tat-specific factor 1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 48.17 44.937 3 0.015308 1 33265 20150910_Q1_SA_NiHu_Masterprac_group10_C 51.612 25.2 1406500 758420 0 0 648030 0 0 7934 720 7827 35168;35169 23217 23217 1 TLLADKGEIR Unmodified 1114.6346 0.63462279 1078;331 Q13330;Q13330-3;E7ESY4;E7EN71;Q13330-2;F8VSM3;E7EQY4;Q9BTC8-2;D6W5A2;F8W8M8;E7EV10;Q9BTC8;E9PCS8 MTA1;MTA3 Metastasis-associated protein MTA1;Metastasis-associated protein MTA3 no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 79.525 77.543 2 0.0073395 1 53558 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.113 25.205 3419700 0 1654300 0 0 0 1765300 7935 1078;331 7828 35170;35171 23218 23218 1 TLLADQGEIR Unmodified 1114.5982 0.59823728 754 O94776 MTA2 Metastasis-associated protein MTA2 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 108.35 98.424 2 0.033976 2 65337 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.721 13.531 92440000 0 19130000 10739000 0 2267900 60304000 7936 754 7829 35172;35173;35174;35175 23219;23220 23220 2 TLLADQGEIRVGCK Unmodified 1558.8137 0.81372614 754 O94776 MTA2 Metastasis-associated protein MTA2 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 1 1 2 118.59 109.67 2;3 7.5948E-20 6 79023 20150910_Q1_SA_NiHu_Masterprac_group13_C 107.53 90.804 454420000 3449700 132340000 143790000 8436000 964860 165430000 7937 754 7830 35176;35177;35178;35179;35180;35181;35182;35183;35184 23221;23222;23223;23224;23225;23226 23221 6 TLLDIDNTR Unmodified 1059.556 0.55603811 899 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 120.42 113.67 2 0.024533 1 77279 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.334 29.99 4240500 1019500 0 0 1004500 0 2216600 + 7938 899 7831 35185;35186;35187 23227 23227 1 TLLDSLRSTSSPAK Unmodified 1474.7991 0.79912193 414 Q5JTH9-2;E9PCK7;Q5JTH9;F5H456 RRP12 RRP12-like protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.22 125.26 3 0.0032664 1 84975 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.301 15.473 4345700 0 0 0 0 0 4345700 7939 414 7832 35188 23228 23228 1 TLLEGEESR Unmodified 1032.5088 0.50875357 789 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 no no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 72.162 64.817 2 3.3183E-19 3 45497 20150910_Q1_SA_NiHu_Masterprac_group10_B 125.71 91.507 38169000 1683200 12323000 10851000 2383700 5887300 5040600 + 7940 789 7833 35189;35190;35191;35192;35193;35194 23229;23230;23231 23231 3 TLLKAPGSTSNLARK Unmodified 1555.9046 0.90459006 1564 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 86.7 79.28 3 1.0813E-17 4 54537 20150910_Q1_SA_NiHu_Masterprac_group15_B 109.83 100.3 16458000 0 2761700 4325600 2154500 2614300 4602000 7941 1564 7834 35195;35196;35197;35198;35199 23232;23233;23234;23235 23234 0 TLLSESSSQSSKSPSLSSK Unmodified 1938.9746 0.9745797 180 B7WPF4;Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 24 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 87.222 85.24 3 0.0015144 1 58477 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.453 34.156 2192700 0 727230 0 0 0 1465500 7942 180 7835 35200;35201 23236 23236 1 TLLVNNNRICR Unmodified 1371.7405 0.74050162 814 P09661;H0YKK0 SNRPA1 U2 small nuclear ribonucleoprotein A' yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 90.197 83.361 3 0.026842 1 57309 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.579 21.689 2270100 0 899400 0 0 425990 944720 7943 814 7836 35202;35203;35204 23237 23237 1 TLLVSTSAVDNNEAQK Unmodified 1688.8581 0.85809337 1196 Q5T8P6-5;Q5T8P6-4;Q5T8P6-3;Q5T8P6-2;Q5T8P6 RBM26 RNA-binding protein 26 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 118.62 106.51 2 0.0062692 1 77021 20150910_Q1_SA_NiHu_Masterprac_group13_C 47.548 24.456 3002400 835770 0 824950 0 0 1341600 7944 1196 7837 35205;35206;35207 23238 23238 1 TLLVSTSAVDNNEAQKK Unmodified 1816.9531 0.95305639 1196 Q5T8P6-5;Q5T8P6-4;Q5T8P6-3;Q5T8P6-2;Q5T8P6 RBM26 RNA-binding protein 26 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 110.69 93.47 3 0.012731 1 69675 20150910_Q1_SA_NiHu_Masterprac_group13_C 38.889 16.063 2516100 0 0 1357300 0 1158900 0 7945 1196 7838 35208;35209 23239 23239 1 TLMGVDPGYKHGCK Unmodified 1561.7381 0.73811836 1302 Q8N5C6;Q8N5C6-2;B7Z6X7 SRBD1 S1 RNA-binding domain-containing protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 80.108 74.126 3 0.01247 1 51216 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.298 33.911 4185300 0 0 1179900 845630 0 2159800 7946 1302 7839 35210;35211;35212 23240 23240 1 TLNDMRQEYEQLIAK Oxidation (M) 1866.9146 0.9145624 899 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 1 1 By matching By matching By MS/MS By matching By matching By matching 2 1 131.39 113.48 2;3 0.007584 2 82122 20150910_Q1_SA_NiHu_Masterprac_group13_C 71.529 45.563 46850000 0 0 44174000 0 2675900 0 + 7947 899 7840 35213;35214;35215 23241;23242 23241 99 2 TLNFEDQTSTDNVSITK Unmodified 1911.9062 0.90616578 729 O60293-2;O60293;O60293-4;G3V1X1 ZFC3H1 Zinc finger C3H1 domain-containing protein yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 130.83 130.23 2 3.412E-18 1 83616 20150910_Q1_SA_NiHu_Masterprac_group10_B 97.352 63.671 0 0 0 0 0 0 0 7948 729 7841 35216 23243 23243 1 TLNGGSDAQDGNQPQHNGESNEDSK Unmodified 2598.0815 0.081457396 741 O75475 PSIP1 PC4 and SFRS1-interacting protein yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 42.23 34.944 3 0.0067963 1 24204 20150910_Q1_SA_NiHu_Masterprac_group15_B 36.935 28.651 4747400 0 0 1366500 0 1139900 2241000 7949 741 7842 35217;35218;35219 23244 23244 1 TLNGGSDAQDGNQPQHNGESNEDSKDNHEASTK Unmodified 3480.4646 0.46461652 741 O75475 PSIP1 PC4 and SFRS1-interacting protein yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 40.279 35.016 4 0.01606 1 25430 20150910_Q1_SA_NiHu_Masterprac_group10_C 24.032 20.993 1166900 1166900 0 0 0 0 0 7950 741 7843 35220 23245 23245 1 TLNMTTSPEEK Unmodified 1249.586 0.58601761 129 F8W720;B4DUT7;P49915 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 78.145 70.634 2 0.0053081 5 49643 20150910_Q1_SA_NiHu_Masterprac_group10_C 72.731 47.716 48674000 3728600 7874300 9012300 5847900 10559000 11652000 7951 129 7844 35221;35222;35223;35224;35225;35226 23246;23247;23248;23249;23250 23250 5 TLNMTTSPEEKRK Unmodified 1533.7821 0.78209166 129 F8W720;B4DUT7;P49915 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 51.956 47.193 3 0.004747 2 33663 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.088 61.223 5144200 0 0 0 1177800 2331200 1635200 7952 129 7845 35227;35228;35229 23251;23252 23251 2 TLPADVQNYYSR Unmodified 1425.6888 0.6888432 547 Q99590-2;F8VXG7;Q99590 SCAF11 Protein SCAF11 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 127.88 116.52 2 0.0018604 5 79796 20150910_Q1_SA_NiHu_Masterprac_group15_C 84.297 49.529 62952000 22833000 3261700 15859000 0 6190300 14808000 7953 547 7846 35230;35231;35232;35233;35234 23253;23254;23255;23256;23257 23255 5 TLPSTDVAQPPSDSDAVGPR Unmodified 2008.9702 0.97016302 1300 Q8N554-2;Q8N554;H3BPT7;H3BTT0;H3BPJ6 ZNF276 Zinc finger protein 276 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 126.96 113.01 2 0.019152 2 75641 20150910_Q1_SA_NiHu_Masterprac_group10_C 37.4 19.227 6210900 3164400 0 1683900 0 531230 831400 7954 1300 7847 35235;35236;35237;35238 23258;23259 23259 2 TLQALQIPAAK Unmodified 1152.6867 0.68665836 929 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 132.28 119.27 2 4.9351E-08 3 83918 20150910_Q1_SA_NiHu_Masterprac_group10_B 110.54 63.313 145300000 13599000 102540000 23553000 0 5608300 0 7955 929 7848 35239;35240;35241;35242 23260;23261;23262 23261 3 TLQGHSVIR Unmodified 1009.5669 0.56687757 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 53.199 45.603 2 0.0062516 2 32740 20150910_Q1_SA_NiHu_Masterprac_group10_B 95.775 55.423 3728000 0 1476100 2251900 0 0 0 7956 1344 7849 35243;35244 23263;23264 23264 2 TLQHGLYYASR Unmodified 1307.6622 0.66223452 1422 Q96T58;Q5VVE3;F6WRY4 SPEN Msx2-interacting protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 87.681 79.029 3 0.021945 1 54551 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.576 34.386 3790200 572860 0 175660 566890 1170300 1304500 7957 1422 7850 35245;35246;35247;35248;35249 23265 23265 1 TLQLDNNFEVK Unmodified 1319.6721 0.67213051 1613 Q9UMS4 PRPF19 Pre-mRNA-processing factor 19 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.03 131.42 2 0.0089992 1 84872 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.267 35.377 13646000 0 13646000 0 0 0 0 7958 1613 7851 35250 23266 23266 1 TLQQNAESRFN Unmodified 1306.6266 0.6265773 139 B4DXE2;O95816 BAG2 BAG family molecular chaperone regulator 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 82.639 76.903 2 0.0033679 1 53109 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.247 69.129 10129000 1818300 2217100 0 951840 1885700 3255900 7959 139 7852 35251;35252;35253;35254;35255 23267 23267 1 TLREIKVTSGAK Unmodified 1301.7667 0.76669959 644 H3BRL3;O14562;B3KW52;H3BUM8 UBFD1 Ubiquitin domain-containing protein UBFD1 yes no 0 0 2 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 57.792 52.749 3 0.0056274 2 38384 20150910_Q1_SA_NiHu_Masterprac_group13_B 79.744 41.776 5964600 943940 775590 2936200 1066800 0 242070 7960 644 7853 35256;35257;35258;35259;35260 23268;23269 23268 1 TLRSTVALTAAR Unmodified 1258.7357 0.73573382 1477 Q9H0A0;E7ESU4 NAT10 N-acetyltransferase 10 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 90.585 84.334 3 0.0023894 2 57155 20150910_Q1_SA_NiHu_Masterprac_group10_B 74.987 47.073 3755500 0 823470 0 293000 2639100 0 7961 1477 7854 35261;35262;35263 23270;23271 23271 2 TLRTWNLVEGR Unmodified 1343.731 0.73098279 1555 Q9NWT1 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 129.43 124.47 3 0.038704 1 84209 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.289 26.525 0 0 0 0 0 0 0 7962 1555 7855 35264 23272 23272 1 TLSDDLDEAAK Unmodified 1176.551 0.55101232 1477 Q9H0A0;E7ESU4;E9PMN9 NAT10 N-acetyltransferase 10 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 102.66 94.292 2 0.0080031 3 64415 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.749 51.22 30697000 1640800 4016700 1208900 1605100 15006000 7219700 7963 1477 7856 35265;35266;35267;35268;35269;35270 23273;23274;23275 23274 3 TLSGAQDSEAAFAK Unmodified 1394.6678 0.66777341 641 H3BTA7;H3BR06;Q15554 TERF2 Telomeric repeat-binding factor 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 94.897 87.001 2 0.0016497 3 59557 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.044 52.019 5696000 595630 818280 826910 710060 1036500 1708600 7964 641 7857 35271;35272;35273;35274;35275;35276 23276;23277;23278 23277 3 TLTDEVNSPDSDRRDK Unmodified 1846.8657 0.86569795 539 Q8TAQ2-2;F8VTJ5;Q8TAQ2;F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 0 0 2 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 2 2 2 2 63.766 56.592 3;4 0.0034072 4 39536 20150910_Q1_SA_NiHu_Masterprac_group13_B 52.5 29.962 59444000 4932600 238820 18584000 12643000 3713600 19333000 7965 539 7858 35277;35278;35279;35280;35281;35282;35283;35284;35285;35286 23279;23280;23281;23282 23279 4 TLTIFMEYMPGGSVKDQLK 2 Oxidation (M) 2189.0748 0.074827787 1432 Q99759;Q99759-2 MAP3K3 Mitogen-activated protein kinase kinase kinase 3 yes no 0 2 1 By matching By matching By matching By matching By MS/MS By matching 1 132.67 114.82 3 0.0010215 1 81716 20150910_Q1_SA_NiHu_Masterprac_group15_C 59.502 37.729 0 0 0 0 0 0 0 7966 1432 7859 35287 23283 23283 164;165 1 TLTPDQWAR Unmodified 1086.5458 0.54580778 1487 Q9H3K6 BOLA2 BolA-like protein 2 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 115.63 104.65 2 0.0061685 2 69227 20150910_Q1_SA_NiHu_Masterprac_group10_B 93.178 73.391 8173800 987470 4892200 0 0 2294100 0 7967 1487 7860 35288;35289;35290 23284;23285 23284 2 TLTPISGGQR Unmodified 1028.5615 0.56145784 1080 Q13415 ORC1 Origin recognition complex subunit 1 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 2 1 1 73.939 65.029 2 0.010869 3 52542 20150910_Q1_SA_NiHu_Masterprac_group13_C 72.2 42.65 15298000 4465800 4780400 6051300 0 0 0 7968 1080 7861 35291;35292;35293;35294 23286;23287;23288 23286 3 TLVDNAYSCDPR Unmodified 1409.6245 0.62452839 1426 Q99543;Q99543-2;H7C3L7 DNAJC2 DnaJ homolog subfamily C member 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 98.324 89.3 2 0.0018163 1 61303 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.565 62.466 8800000 0 0 877710 1064700 2964800 3892700 7969 1426 7862 35295;35296;35297;35298 23289 23289 1 TLVNKEEPPKELPAAEPVLSPLEGTK Unmodified 2785.5113 0.51132634 1465 Q9BY77;Q9BY77-2;B4DMM2 POLDIP3 Polymerase delta-interacting protein 3 yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 132.97 124.69 3;4 1.0478E-12 5 81847 20150910_Q1_SA_NiHu_Masterprac_group15_C 68.192 55.481 148590000 0 32194000 48327000 30761000 14230000 23077000 7970 1465 7863 35299;35300;35301;35302;35303 23290;23291;23292;23293;23294 23293 5 TLVSEGMLTSLRANVDRGK Unmodified 2046.0892 0.089172718 238 C9JA69;Q8WY36-2;Q8WY36 BBX HMG box transcription factor BBX yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 133.28 132.98 3 0.015581 1 86349 20150910_Q1_SA_NiHu_Masterprac_group10_B 46.249 15.674 17632000 0 9212300 0 8419800 0 0 7971 238 7864 35304;35305 23295 23295 1 TLYEHYSGGESHNSSSSK Unmodified 1968.845 0.84496251 891 P33981-2;P33981 TTK Dual specificity protein kinase TTK yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 52.037 45.775 3;4 5.9705E-09 6 32928 20150910_Q1_SA_NiHu_Masterprac_group10_B 94.487 87.355 28657000 1196600 1943300 9128600 3538200 4328500 8521500 7972 891 7865 35306;35307;35308;35309;35310;35311;35312;35313;35314;35315 23296;23297;23298;23299;23300;23301 23300 6 TLYISDSDKRK Unmodified 1324.6987 0.69867961 1042 Q06330;D6R927;Q06330-5;Q06330-4;Q06330-6;Q06330-7;Q06330-3;Q06330-2;D6RBQ8;D6RA45;D6RCM1;D6R946;D6RB37 RBPJ Recombining binding protein suppressor of hairless yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 53.318 46.279 2;3 0.00063548 4 32963 20150910_Q1_SA_NiHu_Masterprac_group13_B 102.52 69.435 34384000 5179000 8172700 16873000 327180 3831900 0 7973 1042 7866 35316;35317;35318;35319;35320 23302;23303;23304;23305 23302 4 TMELNVGNEASFHGQER Unmodified 1917.8639 0.86392381 1201 Q5UIP0-2;Q5UIP0;H7C2B5 RIF1 Telomere-associated protein RIF1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 1 114.43 112.76 3 0.00054899 3 77067 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.433 61.981 8621300 0 3582200 0 1270800 0 3768400 7974 1201 7867 35321;35322;35323;35324 23306;23307;23308 23307 3 TMELNVGNEASFHGQER Oxidation (M) 1933.8588 0.85883843 1201 Q5UIP0-2;Q5UIP0;H7C2B5 RIF1 Telomere-associated protein RIF1 yes no 0 1 0 By matching By matching By matching By matching By matching By MS/MS 1 96.007 93.65 3 0.0097507 1 63938 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.495 32.915 0 0 0 0 0 0 0 7975 1201 7867 35325 23309 23309 146 1 TMFAQVESDDEEAK Unmodified 1598.677 0.67701747 1553 Q9NW82 WDR70 WD repeat-containing protein 70 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 118.29 105.36 2 0.0066263 2 72061 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.946 46.271 2739700 0 0 710960 0 474960 1553800 7976 1553 7868 35326;35327;35328 23310;23311 23310 2 TMLLLSR Unmodified 832.48406 0.48405915 352 P55265;P55265-4;E7ENU4;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 129.07 120.8 2 5.1846E-58 4 84378 20150910_Q1_SA_NiHu_Masterprac_group15_B 154.01 89.21 43110000 0 2141300 7404900 1311700 15884000 16368000 7977 352 7869 35329;35330;35331;35332;35333 23312;23313;23314;23315 23314 4 TMLLLSRSPEAQPK Unmodified 1569.8549 0.85486267 352 P55265;P55265-4;E7ENU4;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 3 2 123.95 114.27 2;3 7.2697E-70 8 81156 20150910_Q1_SA_NiHu_Masterprac_group13_C 136.14 116.64 138230000 25365000 13829000 40412000 11800000 17185000 29643000 7978 352 7870 35334;35335;35336;35337;35338;35339;35340;35341;35342;35343;35344;35345 23316;23317;23318;23319;23320;23321;23322;23323 23319 8 TMLLLSRSPEAQPK Oxidation (M) 1585.8498 0.84977729 352 P55265;P55265-4;E7ENU4;P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase yes no 0 1 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 103.68 93.907 3 0.023712 2 64029 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.79 52.79 15987000 2228600 3130700 1423100 0 5392300 3812400 7979 352 7870 35346;35347;35348;35349;35350 23324;23325 23324 37 0 TMQGSEVVNVLK Unmodified 1303.6806 0.6805867 429 Q8WUM4;E9PFU1 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 130.84 124.95 2 4.0315E-18 4 82837 20150910_Q1_SA_NiHu_Masterprac_group10_B 114.87 80.173 18013000 0 3737100 6385300 2613900 0 5277100 7980 429 7871 35351;35352;35353;35354 23326;23327;23328;23329 23329 2 TMSCSDKILR Unmodified 1209.5846 0.58457783 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 64.678 63.524 3 0.0098335 1 44509 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.387 42.125 1295000 0 0 0 0 0 1295000 7981 352;968 7872 35355 23330 23330 1 TMSGRDCQAWDSQSPHAHGYIPSKFPNK Unmodified 3201.4509 0.4508849 295 CON__P06868 yes yes 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 2 2 2 3 117.47 107.33 4;5;6 4.5412E-07 5 72225 20150910_Q1_SA_NiHu_Masterprac_group10_C 50.271 36.466 53072000 4936000 0 10738000 9165900 8300300 19932000 + 7982 295 7873 35356;35357;35358;35359;35360;35361;35362;35363;35364;35365;35366 23331;23332;23333;23334;23335 23334 3 TMSGRDCQAWDSQSPHAHGYIPSKFPNK Oxidation (M) 3217.4458 0.44579952 295 CON__P06868 yes yes 0 1 2 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 2 109.69 102.24 4;5 2.6075E-08 2 69727 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.938 50.174 23777000 3906300 0 0 5711400 3034000 11125000 + 7983 295 7873 35367;35368;35369;35370;35371 23336;23337 23336 27 2 TNAENEFVTIK Unmodified 1264.6299 0.62993134 789 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 117.61 109.42 2 0.0039728 3 71665 20150910_Q1_SA_NiHu_Masterprac_group13_B 79.492 55.238 24261000 0 14403000 412780 2620200 3714200 3110700 + 7984 789 7874 35372;35373;35374;35375;35376 23338;23339;23340 23338 3 TNAENEFVTIKK Unmodified 1392.7249 0.72489436 789 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 94.17 88.004 3 0.0019072 3 59719 20150910_Q1_SA_NiHu_Masterprac_group13_B 68.463 45.682 9247500 376170 2153300 3801900 1804400 0 1111600 + 7985 789 7875 35377;35378;35379;35380;35381 23341;23342;23343 23341 3 TNFRLLK Unmodified 890.53379 0.53378653 1537 Q9NRW3 APOBEC3C DNA dC->dU-editing enzyme APOBEC-3C yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 95.414 87.794 2 0.027303 2 64748 20150910_Q1_SA_NiHu_Masterprac_group15_C 92.47 39.787 509020000 0 84776000 46282000 15607000 52236000 310110000 7986 1537 7876 35382;35383;35384;35385;35386 23344;23345 23345 2 TNGLTKPAALAAAPAKPGGAGGSK Unmodified 2105.1593 0.15930119 1089 Q13619 CUL4A Cullin-4A yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 92.926 85.873 3 0.013841 1 58841 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.275 24.3 2503300 0 558420 722870 0 0 1222000 7987 1089 7877 35387;35388;35389 23346 23346 1 TNLDLGPTAPSLEKEK Unmodified 1711.8992 0.89922991 464 Q03164-2;Q03164;E9PQG7;E9PR05 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 130.51 113.37 3 0.00023958 3 76393 20150910_Q1_SA_NiHu_Masterprac_group10_C 84.859 49.336 22148000 12404000 0 4546200 0 5197200 0 7988 464 7878 35390;35391;35392 23347;23348;23349 23349 3 TNPEIQSTLRK Unmodified 1285.699 0.69901396 888 P31944 CASP14 Caspase-14;Caspase-14 subunit p19;Caspase-14 subunit p10 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 69.462 62.363 3 0.00097934 2 43739 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.9 36.689 13789000 0 2149200 4859400 1828200 1165400 3786800 7989 888 7879 35393;35394;35395;35396;35397 23350;23351 23350 2 TNPEYIYAPLKEIPPADIPKNK Unmodified 2510.3421 0.34207617 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 133.21 124.29 4 3.5274E-15 2 86368 20150910_Q1_SA_NiHu_Masterprac_group13_B 89.557 72.411 17323000 0 0 0 8370200 8952700 0 7990 578 7880 35398;35399 23352;23353 23352 2 TNPSPTNPFSSDLQK Unmodified 1631.7791 0.77911477 943 P49757-4;P49757-2;P49757-3;P49757;B1P2N8;B1P2N7;B1P2N6;B1P2N5;G3V3Z8 NUMB Protein numb homolog yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 126.61 123.83 2 0.0024433 2 79200 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.215 52.132 1953800 0 768670 0 0 0 1185200 7991 943 7881 35400;35401 23354;23355 23355 2 TNRELLDVKK Unmodified 1214.6983 0.69828568 512 F5H2B9;H0YNH8;G3XAG2;Q9BZF9 UACA Uveal autoantigen with coiled-coil domains and ankyrin repeats yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 59.275 51.807 3 0.03633 1 38431 20150910_Q1_SA_NiHu_Masterprac_group10_C 70.942 38.723 558680 558680 0 0 0 0 0 7992 512 7882 35402 23356 23356 1 TNRSSVKTPEPVVPTAPEPHPTTSTDQPVTPK Unmodified 3394.7369 0.73686261 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 123.03 108.04 4 0.0015436 1 72152 20150910_Q1_SA_NiHu_Masterprac_group10_C 32.962 20.941 1323600 1323600 0 0 0 0 0 7993 1109 7883 35403 23357 23357 1 TNSQFLSGPQK Unmodified 1205.6041 0.60405094 1216 Q68CQ4 DIEXF Digestive organ expansion factor homolog yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 84.256 74.83 2 0.0042884 2 56897 20150910_Q1_SA_NiHu_Masterprac_group15_C 77.674 34.172 4385400 0 1104400 0 0 3281100 0 7994 1216 7884 35404;35405 23358;23359 23358 2 TNVVTMPTAHPR Unmodified 1322.6765 0.67650438 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 2 1 1 1 1 86.777 79.837 3 0.0035705 4 54696 20150910_Q1_SA_NiHu_Masterprac_group13_B 65.234 45.592 18235000 1813400 1536800 668740 1311200 6990000 5915300 7995 383;1082 7885 35406;35407;35408;35409;35410;35411;35412 23360;23361;23362;23363 23361 4 TNVVTMPTAHPRIAPK Unmodified 1731.9454 0.94540901 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 107.92 96.54 3 0.035265 1 64791 20150910_Q1_SA_NiHu_Masterprac_group10_C 63.062 40.671 0 0 0 0 0 0 0 7996 383;1082 7886 35413 23364 23364 1 TPAAAAAMNLASPR Unmodified 1340.6871 0.68706906 1623 Q9UQ35;F5GWZ7 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 123.17 116.11 2 0.009118 2 78961 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.727 31.449 106420000 104810000 720990 0 0 0 887420 7997 1623 7887 35414;35415;35416 23365;23366 23365 2 TPCNAGTFSQPEK Unmodified 1435.6402 0.64017845 719 O43684-2;O43684;B4DDM6 BUB3 Mitotic checkpoint protein BUB3 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 71.155 64.363 2 0.0015783 3 46834 20150910_Q1_SA_NiHu_Masterprac_group10_C 74.78 56.156 2539200 740480 912590 594960 291200 0 0 7998 719 7888 35417;35418;35419;35420 23367;23368;23369 23369 3 TPENFPCK Unmodified 991.44332 0.44331654 295 CON__P06868;P00747 PLG Plasminogen;Plasmin heavy chain A;Activation peptide;Angiostatin;Plasmin heavy chain A, short form;Plasmin light chain B yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 64.436 58.035 2 0.0028773 2 46181 20150910_Q1_SA_NiHu_Masterprac_group15_C 110.41 88.88 3018200 0 405790 0 0 744400 1868100 + 7999 295 7889 35421;35422;35423 23370;23371 23371 2 TPEPVVPTAPEPHPTTSTDQPVTPK Unmodified 2622.3177 0.31771191 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 122.15 119.46 3 8.0054E-05 1 81285 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.998 42.603 1123100 0 452210 0 0 0 670940 8000 1109 7890 35424;35425 23372 23372 0 TPEVDDEALEK Unmodified 1244.5772 0.57722707 292 CON__P02754 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 89.637 81.773 2 1.2045E-127 7 56878 20150910_Q1_SA_NiHu_Masterprac_group10_C 164.48 134.56 82135000 13672000 21960000 9456300 7240400 11635000 18172000 + 8001 292 7891 35426;35427;35428;35429;35430;35431;35432 23373;23374;23375;23376;23377;23378;23379 23379 7 TPEVDDEALEKFDK Unmodified 1634.7675 0.76754703 292 CON__P02754 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 1 1 1 1 129.28 120.12 2;3 0 10 82006 20150910_Q1_SA_NiHu_Masterprac_group13_C 220.32 171.75 103910000 32165000 9353800 45892000 1408200 3194500 11899000 + 8002 292 7892 35433;35434;35435;35436;35437;35438;35439;35440 23380;23381;23382;23383;23384;23385;23386;23387;23388;23389 23380 10 TPKGPSSVEDIK Unmodified 1256.6612 0.66123147 801 P06748-2;P06748;P06748-3 NPM1 Nucleophosmin yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 73.298 64.358 3 0.0383 1 45027 20150910_Q1_SA_NiHu_Masterprac_group10_B 45.213 18.506 2753800 420850 1021700 0 0 1311200 0 8003 801 7893 35441;35442;35443 23390 23390 1 TPKGPSSVEDIKAK Unmodified 1455.7933 0.79330827 801 P06748-2;P06748;P06748-3 NPM1 Nucleophosmin yes no 0 0 2 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 64.892 57.815 3 1.3052E-19 3 47125 20150910_Q1_SA_NiHu_Masterprac_group13_C 109.95 76.681 87622000 10965000 13688000 7827000 4118000 31776000 19248000 8004 801 7894 35444;35445;35446;35447;35448;35449 23391;23392;23393 23391 2 TPQAPASANLVGPR Unmodified 1377.7365 0.7364621 1623 Q9UQ35;F5GWZ7 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 105.1 95.352 2 2.3235E-42 6 63928 20150910_Q1_SA_NiHu_Masterprac_group10_B 123.95 82.564 18313000 0 2967500 2191000 0 4773000 8381700 8005 1623 7895 35450;35451;35452;35453;35454 23394;23395;23396;23397;23398;23399 23398 6 TPQPSSPMDQMGK Unmodified 1402.6221 0.62208554 694 O14497-2;O14497 ARID1A AT-rich interactive domain-containing protein 1A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 88.505 83.428 2 0.009673 1 57062 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.899 49.624 2834600 0 341380 0 447190 872690 1173300 8006 694 7896 35455;35456;35457;35458 23400 23400 1 TPSSSPPITPPASETK Unmodified 1595.8043 0.80426689 499 F5GZ90;Q9NZJ0;E7ERQ0 DTL Denticleless protein homolog yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 87.209 85.453 2 0.01703 1 58540 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.861 35.188 0 0 0 0 0 0 0 8007 499 7897 35459 23401 23401 1 TPTAPAVNLAGAR Unmodified 1237.6779 0.67788459 1623 Q9UQ35;F5GWZ7 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 110.38 103.93 2 0.0012343 2 68692 20150910_Q1_SA_NiHu_Masterprac_group10_B 81.676 58 2061000 455680 590780 0 0 0 1014500 8008 1623 7898 35460;35461;35462 23402;23403 23403 2 TPTCQSSTDCSPYAR Unmodified 1729.7036 0.70358334 767 O95235;B4DL79 KIF20A Kinesin-like protein KIF20A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 65.35 56.877 2 0.039773 1 40160 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.913 37.913 2827400 0 197340 325070 0 972050 1332900 8009 767 7899 35463;35464;35465;35466 23404 23404 1 TPTQTNGSNVPFKPR Unmodified 1642.8427 0.84271808 90 P78347-2;P78347-4;P78347-3;B4DH52;P78347 GTF2I General transcription factor II-I yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 85.881 76.787 3 0.0086684 2 52984 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.351 21.58 4349600 149200 1062700 762330 0 252380 2122900 8010 90 7900 35467;35468;35469;35470;35471 23405;23406 23405 2 TPVQYSQQQNSPQK Unmodified 1631.7903 0.79034816 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 56.976 50.55 2 0.0011059 4 41381 20150910_Q1_SA_NiHu_Masterprac_group15_C 76.156 58.462 9167000 735990 1373400 972940 546120 1959900 3578600 8011 919 7901 35472;35473;35474;35475;35476;35477 23407;23408;23409;23410 23408 4 TQAPAVATT Unmodified 858.4447 0.44469675 839 P15880;H0YEN5;E9PQD7 RPS2 40S ribosomal protein S2 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 62.466 53.468 1 0.0086927 5 43449 20150910_Q1_SA_NiHu_Masterprac_group13_C 60.118 42.21 1946300 629700 0 462080 263770 590750 0 8012 839 7902 35478;35479;35480;35481 23411;23412;23413;23414;23415 23412 5 TQASSSFQDSSQPAGK Unmodified 1624.7329 0.73289286 923 P46087;Q3KQS4;P46087-2 NOP2 Putative ribosomal RNA methyltransferase NOP2 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 1 1 1 1 1 54.921 48.633 2 1.8719E-37 6 34635 20150910_Q1_SA_NiHu_Masterprac_group13_B 114.96 103.7 23353000 6386500 1875800 1324200 1574200 9149100 3043200 8013 923 7903 35482;35483;35484;35485;35486;35487;35488 23416;23417;23418;23419;23420;23421 23416 6 TQATLKPKDHHQPLGR Unmodified 1825.9911 0.99111365 923 P46087;Q3KQS4;P46087-2 NOP2 Putative ribosomal RNA methyltransferase NOP2 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 43.335 38.221 4 0.020707 3 27784 20150910_Q1_SA_NiHu_Masterprac_group10_B 40.211 16.127 7398200 0 668200 693560 662520 3983500 1390400 8014 923 7904 35489;35490;35491;35492;35493 23422;23423;23424 23424 3 TQDNRNNNSQQDIDSENMKQK Unmodified 2506.1103 0.1102551 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 43.986 38.145 4 0.029531 1 31058 20150910_Q1_SA_NiHu_Masterprac_group13_C 33.37 24.994 3852800 0 0 918260 370390 924320 1639800 8015 1325 7905 35494;35495;35496;35497 23425 23425 1 TQDPSSPGTTPPQAR Unmodified 1538.7325 0.73249893 1069 Q13112 CHAF1B Chromatin assembly factor 1 subunit B yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 57.097 52.635 2 0.00045801 2 37987 20150910_Q1_SA_NiHu_Masterprac_group10_B 71.279 48.888 2886700 0 530260 601440 332180 0 1422900 8016 1069 7906 35498;35499;35500;35501 23426;23427 23427 2 TQEDKEPISENIEVSK Unmodified 1844.9004 0.90035212 1175 Q562F6-2;Q562F6 SGOL2 Shugoshin-like 2 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 96.703 88.69 3 0.020385 2 60977 20150910_Q1_SA_NiHu_Masterprac_group10_C 40.857 27.756 5739900 896150 1586900 985910 757570 133630 1379800 8017 1175 7907 35502;35503;35504;35505;35506;35507 23428;23429 23429 2 TQEDPKPFCVGSAPPSVDVTPTYTK Unmodified 2720.3003 0.30034729 1237 Q6W2J9;Q6W2J9-4;Q6W2J9-2;H7BYY2;Q6W2J9-3;A1A564 BCOR BCL-6 corepressor yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.2 131.59 3 0.011603 1 85195 20150910_Q1_SA_NiHu_Masterprac_group10_B 35.23 22.317 4451000 0 4451000 0 0 0 0 8018 1237 7908 35508 23430 23430 1 TQFLTTPISQAQK Unmodified 1461.7827 0.78274359 1405 Q96L91-4;Q96L91-3;Q96L91-5;Q96L91-2;Q96L91 EP400 E1A-binding protein p400 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 129.31 128.7 2 0.015732 1 82451 20150910_Q1_SA_NiHu_Masterprac_group10_B 68.044 30.796 1654400 0 1654400 0 0 0 0 8019 1405 7909 35509 23431 23431 0 TQIQSVEPYTK Unmodified 1292.6612 0.66123147 602 G8JLH9;P40763-2;P40763 STAT3 Signal transducer and activator of transcription 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 92.106 86.215 2 0.0033321 1 58373 20150910_Q1_SA_NiHu_Masterprac_group10_B 83.182 57.2 1625800 415640 1210200 0 0 0 0 8020 602 7910 35510;35511 23432 23432 1 TQLEINGRNNLIQQK Unmodified 1767.9591 0.95914482 263;764 Q9NR56-3;Q9NR56-4;E9PBW7;Q9NR56-6;C9JP00;Q9NR56-2;Q9NR56-5;Q9NR56;H7C4T5;Q86VM6;C9J4T8;Q9NUK0-4;Q9NUK0-3;Q9NUK0-2;B1AKI6;Q9NUK0;O95205;Q5VZF2-3;Q5VZF2-2;Q5VZF2;B4E3F7 MBNL1;MBNL3;MBLL;MBNL2 Muscleblind-like protein 1;Muscleblind-like protein 3;Muscleblind-like protein 2 no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 113.35 104.27 3 0.00062153 5 69911 20150910_Q1_SA_NiHu_Masterprac_group10_C 81.904 35.698 76021000 13877000 14900000 15596000 4684100 7242800 19720000 8021 263;764 7911 35512;35513;35514;35515;35516;35517 23433;23434;23435;23436;23437 23437 5 TQLGQKPFTCSVCGK Unmodified 1709.8229 0.82291062 835 P13682;B4DUB8 ZNF35 Zinc finger protein 35 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 97.442 89.446 3 0.017864 2 61267 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.69 24.517 16696000 457850 2360500 2039600 2235500 4378900 5223300 8022 835 7912 35518;35519;35520;35521;35522;35523 23438;23439 23438 2 TQNQENTFPCKK Unmodified 1493.6933 0.69327665 1231 Q6PJG2 ELMSAN1 ELM2 and SANT domain-containing protein 1 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 43.127 39.106 3 0.010354 1 28449 20150910_Q1_SA_NiHu_Masterprac_group10_C 51.979 33.341 10164000 1224500 1715200 5559600 814560 0 849830 8023 1231 7913 35524;35525;35526;35527;35528 23440 23440 1 TQPSSGVDSAVGTLPATSPQSTSVQAK Unmodified 2600.293 0.29295372 1082 Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 2 1 1 131.14 114.36 2;3 5.8108E-40 3 77085 20150910_Q1_SA_NiHu_Masterprac_group10_C 100.04 79.193 21416000 10034000 0 4079300 0 7302600 0 8024 1082 7914 35529;35530;35531;35532 23441;23442;23443 23443 3 TQPTVINNLK Unmodified 1126.6346 0.63462279 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 99.506 90.417 2 0.026776 2 67991 20150910_Q1_SA_NiHu_Masterprac_group13_C 58.699 6.1207 14023000 4626600 0 3749800 5646100 0 0 8025 578 7915 35533;35534;35535 23444;23445 23444 2 TQQAAQANITLQEQIEAIHK Unmodified 2234.1655 0.16550878 1138 Q15459;F5H048;E9PAW1;H7C1L2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.3 131.69 3 1.6392E-14 1 85172 20150910_Q1_SA_NiHu_Masterprac_group10_B 90.729 66.322 0 0 0 0 0 0 0 8026 1138 7916 35536 23446 23446 1 TQQAAQANITLQEQIEAIHKAK Unmodified 2433.2976 0.29758559 1138 Q15459;F5H048;E9PAW1;H7C1L2 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.16 130.55 4 0.023691 1 83947 20150910_Q1_SA_NiHu_Masterprac_group10_B 27.574 20.548 14981000 0 14981000 0 0 0 0 8027 1138 7917 35537 23447 23447 0 TQRWAEPGEPICVVCGR Unmodified 2013.9513 0.95129903 190 B7Z5N6;Q5T1V6-2;Q5T1V6;Q5T1V5 DDX59 Probable ATP-dependent RNA helicase DDX59 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 131.95 120.47 3 0.027001 2 82837 20150910_Q1_SA_NiHu_Masterprac_group13_C 50.376 21.564 10414000 0 0 4244800 0 0 6169000 8028 190 7918 35538;35539 23448;23449 23448 1 TQSLPVTEK Unmodified 1001.5393 0.53932542 1533 Q9NQW6;Q9NQW6-2 ANLN Actin-binding protein anillin yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 68.642 61.415 2 0.0065688 1 42990 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.143 60.991 75775000 6642600 8368500 25687000 5420200 13352000 16305000 8029 1533 7919 35540;35541;35542;35543;35544;35545 23450 23450 1 TQSLPVTEKVTENQIPAK Unmodified 1982.0684 0.068420501 1533 Q9NQW6;Q9NQW6-2 ANLN Actin-binding protein anillin yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 128.22 112.53 3 0.001817 1 74347 20150910_Q1_SA_NiHu_Masterprac_group10_C 55.437 37.046 1215500 1215500 0 0 0 0 0 8030 1533 7920 35546 23451 23451 1 TQSRPGGPPNPPGPSPK Unmodified 1669.8536 0.85361712 212 B7ZM82;B3KVH1;O95785;O95785-2 WIZ Protein Wiz yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 2 1 1 2 1 64.633 57.135 3 0.0017341 3 46143 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.069 47.209 11914000 2909700 950300 1371800 1194500 3389700 2097900 8031 212 7921 35547;35548;35549;35550;35551;35552;35553;35554;35555 23452;23453;23454 23453 3 TQSSLVEAFNK Unmodified 1222.6194 0.61936665 568 H0Y5I5;F8WCX2;Q8N1G0-2;Q8N1G0 ZNF687 Zinc finger protein 687 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 114.95 113.09 2 0.036415 1 76948 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.448 29.789 3752000 0 831090 0 283540 0 2637300 8032 568 7922 35556;35557;35558 23455 23455 1 TQTPNRKEWVTPK Unmodified 1583.842 0.8419898 815 P09874 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 65.033 57.973 3 0.0069698 1 46530 20150910_Q1_SA_NiHu_Masterprac_group15_C 67.879 39.826 30747000 3516500 4026800 5029900 5569700 8120200 4483500 8033 815 7923 35559;35560;35561;35562;35563;35564 23456 23456 1 TQTPPVEENVTQK Unmodified 1469.7362 0.73618733 673 H7C4Z8;Q6P1Q9-2;Q6P1Q9 METTL2B Methyltransferase-like protein 2B yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 72.396 71.142 2 0.015794 1 49349 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.135 19.377 1083700 0 0 0 0 0 1083700 8034 673 7924 35565 23457 23457 1 TQTSMSLGTTR Unmodified 1181.571 0.57103625 1314 Q8NB16 MLKL Mixed lineage kinase domain-like protein yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 71.231 66.254 2 0.0025505 1 46208 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.911 78.21 8015600 0 1121400 0 447640 1772800 4673800 8035 1314 7925 35566;35567;35568;35569 23458 23458 1 TQTSMSLGTTREK Unmodified 1438.7086 0.70859237 1314 Q8NB16 MLKL Mixed lineage kinase domain-like protein yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 59.451 53.749 3 0.001656 2 38335 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.537 58.617 16825000 916880 0 3915200 206640 0 11786000 8036 1314 7926 35570;35571;35572;35573 23459;23460 23460 2 TQVAGGQLSFKGK Unmodified 1319.7197 0.7197494 921 P46060;B0QYT6;B0QYT5;B0QYT4 RANGAP1 Ran GTPase-activating protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 2 2 85.594 77.874 2;3 3.1087E-91 14 54081 20150910_Q1_SA_NiHu_Masterprac_group10_C 147.33 80.663 147490000 34184000 19350000 28383000 16661000 24957000 23953000 8037 921 7927 35574;35575;35576;35577;35578;35579;35580;35581;35582;35583;35584;35585;35586;35587 23461;23462;23463;23464;23465;23466;23467;23468;23469;23470;23471;23472;23473;23474 23474 14 TQVEASEESALNHLQNPGDAAEGR Unmodified 2522.1633 0.16333653 1658 Q9Y605 MRFAP1 MORF4 family-associated protein 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 129.53 128.92 3 1.4407E-14 2 82436 20150910_Q1_SA_NiHu_Masterprac_group10_B 84.025 71.127 22131000 0 22131000 0 0 0 0 8038 1658 7928 35588 23475;23476 23476 2 TQVVAGTNYYIK Unmodified 1355.7085 0.70851601 781 P01040;C9J0E4 CSTA Cystatin-A;Cystatin-A, N-terminally processed yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 117.39 108.39 2 0.034044 1 78396 20150910_Q1_SA_NiHu_Masterprac_group13_C 46.282 30.256 2724600 0 0 2087300 637270 0 0 8039 781 7929 35589;35590 23477 23477 1 TQYEELKAQQDK Unmodified 1479.7205 0.72053726 827 P12270 TPR Nucleoprotein TPR yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 56.355 52.57 3 0.0036351 3 39135 20150910_Q1_SA_NiHu_Masterprac_group10_C 69.229 49.104 2055300 1067400 0 0 987880 0 0 8040 827 7930 35591;35592 23478;23479;23480 23480 3 TRAEAEAAAVHGAR Unmodified 1408.7171 0.71712364 1196 Q5T8P6-5;Q5T8P6-4;Q5T8P6-3;Q5T8P6-2;Q5T8P6;E2PSN0 RBM26 RNA-binding protein 26 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 43.563 37.271 3 0.014637 1 26282 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.639 34.844 2168700 0 507620 428090 0 446580 786390 8041 1196 7931 35593;35594;35595;35596 23481 23481 1 TRDFKPGDLIFAK Unmodified 1506.8195 0.81946344 741 O75475;O75475-2 PSIP1 PC4 and SFRS1-interacting protein yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 132.4 126.96 3 1.5596E-131 4 87538 20150910_Q1_SA_NiHu_Masterprac_group15_B 149.82 99.737 104590000 18224000 36334000 0 50028000 0 0 8042 741 7932 35597;35598;35599;35600 23482;23483;23484;23485 23483 4 TRDSSDIETAVVK Unmodified 1419.7205 0.72053726 1404 Q96L73-2;Q96L73-3;Q96L73 NSD1 Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 79.482 74.293 3 0.0026697 3 51434 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.798 36.019 3060400 0 767010 626200 184900 0 1482300 8043 1404 7933 35601;35602;35603;35604 23486;23487;23488 23488 3 TRELFVHGLPGSGK Unmodified 1496.81 0.80996139 1049 Q08AF3 SLFN5 Schlafen family member 5 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 112.08 103.13 3 6.2045E-05 7 68197 20150910_Q1_SA_NiHu_Masterprac_group10_C 91.712 61.907 23011000 2245900 1010000 2334500 3352700 8405200 5663100 8044 1049 7934 35605;35606;35607;35608;35609;35610 23489;23490;23491;23492;23493;23494;23495 23495 7 TRETGLSYTEDDK Unmodified 1513.6896 0.68963106 1080 Q13415 ORC1 Origin recognition complex subunit 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 2 2 1 1 2 63.195 56.538 2;3 0.0011021 3 39963 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.689 90.689 11355000 733190 3266900 2327800 989500 404910 3632400 8045 1080 7935 35611;35612;35613;35614;35615;35616;35617;35618;35619 23496;23497;23498 23497 3 TRETGLSYTEDDKK Unmodified 1641.7846 0.78459408 1080 Q13415 ORC1 Origin recognition complex subunit 1 yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 1 2 50.785 45.309 3;4 1.7929E-12 8 32539 20150910_Q1_SA_NiHu_Masterprac_group10_B 104.9 104.9 8534600 399420 960150 1704300 861250 1188400 3421000 8046 1080 7936 35620;35621;35622;35623;35624;35625;35626;35627;35628 23499;23500;23501;23502;23503;23504;23505;23506 23506 8 TRHDVGLPGVSR Unmodified 1292.6949 0.69493163 428 E9PFK5;P78316-2;P78316 NOP14 Nucleolar protein 14 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 70.735 69.581 3 0.011277 1 48242 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.098 36.703 726600 0 0 0 0 0 726600 8047 428 7937 35629 23507 23507 1 TRKQVSSHLQVLAR Unmodified 1621.9376 0.93762152 606 H0Y3A6 yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 63.25 57.885 4 0.00099167 3 41030 20150910_Q1_SA_NiHu_Masterprac_group13_B 71.529 59.611 3679700 0 0 0 1112400 1139400 1428000 8048 606 7938 35630;35631;35632 23508;23509;23510 23508 3 TRLLQQNTQLK Unmodified 1341.7728 0.7728476 1029 Q01664;I3L254 TFAP4 Transcription factor AP-4 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 79.249 71.869 3 0.0034052 3 49870 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.137 49.377 12574000 0 2834000 1590900 631860 1472800 6044500 8049 1029 7939 35633;35634;35635;35636;35637 23511;23512;23513 23512 3 TRPAANPIQFTLNKEK Unmodified 1827.0003 0.0002813566 870 P23921;H0YFI0;E9PD78;E9PL69;F5H861 RRM1 Ribonucleoside-diphosphate reductase large subunit;Ribonucleoside-diphosphate reductase yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 1 121.77 108.83 4 1.6011E-50 5 76960 20150910_Q1_SA_NiHu_Masterprac_group15_C 121.13 100.69 12715000 990710 1359200 1936600 0 3106200 5322300 8050 870 7940 35638;35639;35640;35641;35642;35643;35644 23514;23515;23516;23517;23518 23516 5 TRPLLNIRSDK Unmodified 1311.7623 0.76228292 893 Q5T8Z5;Q5T8Z6;Q5T8Z4;Q5T8Z1;P35226 BMI1 Polycomb complex protein BMI-1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 78.003 70.644 3 0.018292 1 56118 20150910_Q1_SA_NiHu_Masterprac_group13_C 70.942 50.153 5759800 0 527000 433980 305140 1364700 3129000 8051 893 7941 35645;35646;35647;35648;35649 23519 23519 1 TRQAFFLHTTYFTK Unmodified 1759.9046 0.90459006 331 E7EQY4;Q9BTC8-2;D6W5A2;F8W8M8;E7EV10;Q9BTC8 MTA3 Metastasis-associated protein MTA3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 132.51 127.55 3 0.0015938 1 87514 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.321 42.149 36115000 0 0 0 0 0 36115000 8052 331 7942 35650 23520 23520 0 TRQDGSQEAPEAPLSSELEPFHPKPK Unmodified 2874.4148 0.41480019 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7;H0Y6Z8 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 2 130.87 125.3 4;5 9.5646E-163 8 85873 20150910_Q1_SA_NiHu_Masterprac_group15_B 139.04 125.6 95524000 9498200 16502000 0 22230000 3584400 43710000 8053 1109 7943 35651;35652;35653;35654;35655;35656;35657;35658 23521;23522;23523;23524;23525;23526;23527;23528 23524 7 TRQVCPLDNREWEFQK Unmodified 2105.0113 0.011256748 996 P62877 RBX1 E3 ubiquitin-protein ligase RBX1;E3 ubiquitin-protein ligase RBX1, N-terminally processed yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 2 126.86 119.94 3;4 0.0043852 3 79652 20150910_Q1_SA_NiHu_Masterprac_group15_C 50.305 35.712 9002300 0 0 0 297370 1614000 7091000 8054 996 7944 35659;35660;35661;35662 23529;23530;23531 23531 3 TRSKDIFDQLAK Unmodified 1420.7674 0.76742787 873 P25205 MCM3 DNA replication licensing factor MCM3 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 113.56 104.54 3 1.3166E-06 5 71608 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.39 55.624 22750000 2454700 3760100 6273900 2564600 2890900 4805500 8055 873 7945 35663;35664;35665;35666;35667;35668 23532;23533;23534;23535;23536 23534 5 TRSNPEGAEDRAVGAQASVGSR Unmodified 2214.0737 0.073733664 1556 Q9NWV8-3;Q9NWV8 BABAM1 BRISC and BRCA1-A complex member 1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 71.689 60.342 4 0.035842 1 49035 20150910_Q1_SA_NiHu_Masterprac_group13_C 31.314 19.888 2969100 0 1336300 1115600 0 517240 0 8056 1556 7946 35669;35670;35671 23537 23537 1 TRSQEQEVLER Unmodified 1373.6899 0.68990583 364 E7EQT4;Q9UKV3;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 55.981 51.719 3 0.030506 1 37131 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.463 21.071 749530 217520 0 0 0 0 532010 8057 364 7947 35672;35673 23538 23538 1 TSAALQTHFNEVHAK Unmodified 1652.8271 0.82706802 1150 Q15911-2;Q15911 ZFHX3 Zinc finger homeobox protein 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 86.217 78.588 3 0.00056523 2 54193 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.789 54.056 7785000 792910 1250300 1445400 1195900 1320900 1779600 8058 1150 7948 35674;35675;35676;35677;35678;35679 23539;23540 23539 2 TSALSDETKNNWEVSALSR Unmodified 2107.0182 0.018175845 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 132.07 122.57 3 2.09E-82 5 78421 20150910_Q1_SA_NiHu_Masterprac_group10_C 130.38 64.867 236930000 36204000 46256000 33643000 27567000 14441000 78815000 8059 1012 7949 35680;35681;35682;35683;35684;35685 23541;23542;23543;23544;23545 23545 2 TSASLEMNQGVSEER Unmodified 1636.7363 0.73626368 1488 Q9H410;B4DWT2;Q5JW53;Q5JW58 DSN1 Kinetochore-associated protein DSN1 homolog yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 91.533 86.381 2 0.0027227 4 59093 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.476 52.555 3220800 0 658210 0 494380 1299200 768990 8060 1488 7950 35686;35687;35688;35689 23546;23547;23548;23549 23546 3 TSCRLSGGLGAGSCR Unmodified 1537.7089 0.70894349 304 Q04695;CON__Q04695 KRT17 Keratin, type I cytoskeletal 17 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 67.468 60.801 3 0.00052713 3 42799 20150910_Q1_SA_NiHu_Masterprac_group10_B 72.433 57.642 11910000 1280100 1535600 1117700 7976100 0 0 + 8061 304 7951 35690;35691;35692;35693 23550;23551;23552 23552 3 TSDANETEDHLESLICK Unmodified 1960.8684 0.86840006 1052 Q09161;F2Z2T1 NCBP1 Nuclear cap-binding protein subunit 1 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 132.51 132.51 3 0.0018934 1 85546 20150910_Q1_SA_NiHu_Masterprac_group13_B 53.924 40.823 6319900 0 0 0 6319900 0 0 8062 1052 7952 35694 23553 23553 1 TSDAPYDSADDWSEHISSSGK Unmodified 2253.9298 0.92981435 1446 Q9BTA9-2;Q9BTA9;Q9BTA9-5;B4DMH1;Q9BTA9-3;C9JVK6;C9JD58 WAC WW domain-containing adapter protein with coiled-coil yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 125.98 123.19 3 2.6779E-05 3 83460 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.983 59.983 5703100 0 2080000 0 0 0 3623100 8063 1446 7953 35695;35696 23554;23555;23556 23555 2 TSDFNTFLAQEGCTKGK Unmodified 1902.8782 0.87817689 442 E9PHZ2;Q9UHD1-2;Q9UHD1 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 130.28 128.43 3 0.0016449 2 82875 20150910_Q1_SA_NiHu_Masterprac_group13_B 58.712 41.716 7602800 0 3098300 0 1435500 0 3069100 8064 442 7954 35697;35698;35699 23557;23558 23557 2 TSDGQFSL Unmodified 853.38176 0.38176214 1320 Q8NDX6 ZNF740 Zinc finger protein 740 yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 127.98 115.86 1 0.0074194 2 80711 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.998 45 31807000 0 4620700 22768000 0 4417700 0 8065 1320 7955 35700;35701;35702 23559;23560 23559 2 TSDIFGSPVTATSR Unmodified 1437.71 0.70997257 98 Q9H910;B4DLH4;H3BU16;Q9H910-2;A6NGP5;H3BMV3;B4DL85;H3BMT0;H3BTV5 HN1L Hematological and neurological expressed 1-like protein yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 126.46 124.61 2 0.0011058 2 80044 20150910_Q1_SA_NiHu_Masterprac_group10_B 76.358 45.791 17568000 0 3242400 0 756580 0 13569000 8066 98 7956 35703;35704;35705 23561;23562 23562 2 TSDTETEPSKTVSTANR Unmodified 1822.8545 0.85446456 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 49.751 44.035 3 3.7049E-73 3 36174 20150910_Q1_SA_NiHu_Masterprac_group13_C 126.07 126.07 16646000 0 4696900 2513200 1714500 2460300 5260800 8067 919;920 7957 35706;35707;35708;35709;35710 23563;23564;23565 23563 3 TSDTETEPSKTVSTANRSGR Unmodified 2123.0091 0.0090677215 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 47.273 41.717 4 0.0027342 1 29503 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.904 38.131 24221000 3065500 3818100 6819700 2584300 2993500 4939800 8068 919;920 7958 35711;35712;35713;35714;35715;35716 23566 23566 1 TSEDQAAILPGK Unmodified 1228.6299 0.62993134 643 Q12968-5;Q12968-6;Q12968-4;I3L3K7;H3BR83;H3BRS1;Q12968-3;Q12968-2;Q12968 NFATC3 Nuclear factor of activated T-cells, cytoplasmic 3 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 98.604 82.261 2 0.0035603 1 61269 20150910_Q1_SA_NiHu_Masterprac_group15_C 69.261 39.056 580580 0 0 0 0 580580 0 8069 643 7959 35717 23567 23567 1 TSEISIPADLDK Unmodified 1287.6558 0.65581174 928 P46939 UTRN Utrophin yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 109.39 92.449 2 0.001336 1 67590 20150910_Q1_SA_NiHu_Masterprac_group15_C 91.469 44.514 1716800 0 0 0 0 1716800 0 8070 928 7960 35718 23568 23568 1 TSEVDLAKPLVK Unmodified 1298.7446 0.74456717 429 Q8WUM4;E9PFU1;F8WEQ7;F8WBR8;C9IZF9 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 112.18 104.72 2 1.3716E-11 2 71598 20150910_Q1_SA_NiHu_Masterprac_group15_B 109.39 62.434 2983700 477780 763230 611990 252920 0 877800 8071 429 7961 35719;35720;35721;35722;35723 23569;23570 23570 2 TSEVIEDEK Acetyl (Protein N-term) 1090.503 0.50299949 1453 Q9BV86-2;Q9BV86 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed yes no 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 93.268 85.423 2 0.0032299 7 58465 20150910_Q1_SA_NiHu_Masterprac_group15_B 104.05 54.007 8831100 383370 1478600 1664000 517720 1464700 3322700 8072 1453 7962 35724;35725;35726;35727;35728;35729;35730 23571;23572;23573;23574;23575;23576;23577 23574 7 TSEVNCYRCGESGHLAR Unmodified 1994.8687 0.86869161 112;992 B4DP17;P62633-3;P62633-2;P62633;P62633-5;E9PDR7;P62633-4 CNBP Cellular nucleic acid-binding protein no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 2 2 66.706 59.444 3;4 1.1176E-31 12 42155 20150910_Q1_SA_NiHu_Masterprac_group10_B 107.74 99.135 106200000 25941000 15196000 21135000 14712000 12787000 16433000 8073 112;992 7963 35731;35732;35733;35734;35735;35736;35737;35738;35739;35740;35741;35742;35743;35744 23578;23579;23580;23581;23582;23583;23584;23585;23586;23587;23588;23589 23585 12 TSFEIAELKER Unmodified 1321.6878 0.68778057 550 F8W0J4;O95619 YEATS4 YEATS domain-containing protein 4 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 131.24 113.24 3 0.029174 1 81947 20150910_Q1_SA_NiHu_Masterprac_group13_C 77.288 50.316 0 0 0 0 0 0 0 8074 550 7964 35745 23590 23590 1 TSFFLGEVGNAAK Unmodified 1339.6772 0.67721588 1168;1169 Q49A26-2;Q49A26;Q49A26-3;Q49A26-4;Q49A26-5 GLYR1 Putative oxidoreductase GLYR1 no no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 133.52 115.68 2 0.0018191 1 82614 20150910_Q1_SA_NiHu_Masterprac_group15_C 81.789 49.571 59952000 0 0 0 0 59952000 0 8075 1168;1169 7965 35746 23591 23591 1 TSFTQEQIEALEK Unmodified 1522.7515 0.75150304 877;878 P26367;G3V3Q9;E9PS79;G3V567;G3V5W7;E9PIX4;G3V4N4;G3V4M3;P26367-2 PAX6 Paired box protein Pax-6 no no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.28 131.68 2 6.4773E-210 1 85186 20150910_Q1_SA_NiHu_Masterprac_group10_B 173.06 112.71 10197000 0 10197000 0 0 0 0 8076 877;878 7966 35747 23592 23592 1 TSFTSVSR Unmodified 883.43995 0.43994572 299 P13647;CON__P13647;F8VV57;E7EU87;CON__Q5XQN5;F8VU69 KRT5 Keratin, type II cytoskeletal 5 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 64.189 57.217 2 0.012377 3 40450 20150910_Q1_SA_NiHu_Masterprac_group13_B 90.601 70.824 11603000 1009100 1720900 2806300 3671600 971470 1423500 + 8077 299 7967 35748;35749;35750;35751;35752;35753 23593;23594;23595 23593 3 TSFVCTYCSK Unmodified 1251.5264 0.52639425 1094 Q14119 VEZF1 Vascular endothelial zinc finger 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 1 2 93.407 86.907 2 2.4482E-48 5 59579 20150910_Q1_SA_NiHu_Masterprac_group10_C 141.91 137.02 217220000 57907000 22380000 14688000 21156000 47900000 53184000 8078 1094 7968 35754;35755;35756;35757;35758;35759;35760;35761;35762 23596;23597;23598;23599;23600 23600 5 TSGAFVYDCSKF Unmodified 1380.602 0.60200203 1065 Q12948 FOXC1 Forkhead box protein C1 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 132.39 123.28 2 0.0096003 2 84825 20150910_Q1_SA_NiHu_Masterprac_group10_B 89.44 73.85 47231000 0 18632000 10944000 10916000 6737900 0 8079 1065 7969 35763;35764;35765;35766 23601;23602 23602 2 TSGETTQTHTEPTGDSKSIK Unmodified 2103.992 0.99202067 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 2 1 1 2 39.34 36.08 3;4 0.0064645 4 26496 20150910_Q1_SA_NiHu_Masterprac_group10_C 44.238 34.954 14328000 1827300 2426000 0 1062700 1779500 7232100 8080 919;920 7970 35767;35768;35769;35770;35771;35772;35773 23603;23604;23605;23606 23606 4 TSGFRPIAKPAYSPASWSSR Unmodified 2165.1018 0.10178632 1650 Q9Y446;E9PK71 PKP3 Plakophilin-3 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 129.78 127.92 4 0.00034682 3 85230 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.618 46.684 19298000 0 2862600 0 1616600 0 14819000 8081 1650 7971 35774;35775;35776 23607;23608;23609 23609 3 TSGIINKFCSAK Unmodified 1324.6809 0.68092105 769 O95243-2 MBD4 Methyl-CpG-binding domain protein 4 no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 2 2 2 99.315 91.605 2;3 0.0050472 8 62723 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.216 66.382 15223000 0 2142200 3729300 4163800 2668800 2518800 8082 769 7972 35777;35778;35779;35780;35781;35782;35783;35784;35785;35786;35787 23610;23611;23612;23613;23614;23615;23616;23617 23612 8 TSGNSQREYQLMK Unmodified 1540.7304 0.73039044 725 O43929;B7Z632;B7Z3D0;F5H069 ORC4;ORC4L Origin recognition complex subunit 4 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 66.294 65.139 3 0.03283 1 45322 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.897 28.509 2883500 0 0 0 0 0 2883500 8083 725 7973 35788 23618 23618 1 TSGQTFANSNSSR Unmodified 1355.6066 0.60657014 193 B7Z6Q6;Q99661;Q99661-2;B7Z7M6 KIF2C Kinesin-like protein KIF2C yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 43.225 33.349 2 0.036805 1 27198 20150910_Q1_SA_NiHu_Masterprac_group13_C 42.317 17.464 753320 0 0 753320 0 0 0 8084 193 7974 35789 23619 23619 1 TSGRVAVEEVDEEGK Unmodified 1603.7689 0.76894402 783 P02545;P02545-3;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 1 2 2 74.171 66.996 2;3 8.0759E-31 5 53697 20150910_Q1_SA_NiHu_Masterprac_group13_C 117.53 103.59 37241000 3271800 12654000 6198000 4311000 2762400 8043800 8085 783 7975 35790;35791;35792;35793;35794;35795;35796;35797;35798 23620;23621;23622;23623;23624 23620 5 TSGRVAVEEVDEEGKFVR Unmodified 2006.0069 0.006882877 783 P02545;P02545-3;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 114.46 105.31 4 0.001405 3 69401 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.688 49.371 11350000 1545100 2810100 3059600 625480 1239800 2069900 8086 783 7976 35799;35800;35801;35802;35803;35804 23625;23626;23627 23627 3 TSGSVYITLKK Unmodified 1195.6812 0.68123863 903 P37108;H0YLA2 SRP14 Signal recognition particle 14 kDa protein yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 1 1 1 1 1 93.968 85.875 2 6.7628E-41 3 59004 20150910_Q1_SA_NiHu_Masterprac_group15_B 131.12 109.46 11427000 3248200 1114700 1419500 1025200 2294500 2325100 8087 903 7977 35805;35806;35807;35808;35809;35810;35811 23628;23629;23630 23629 2 TSGTEPADFALPSSR Unmodified 1534.7264 0.72635092 1063 Q12888;Q12888-2;A6NNK5;F8VY86 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 129.54 119.21 2 0.0015552 3 84193 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.481 42.938 15990000 0 1365800 5327900 0 1337900 7958100 8088 1063 7978 35812;35813;35814;35815 23631;23632;23633 23631 3 TSGTEPADFALPSSRGGPGK Unmodified 1930.9385 0.93846896 1063 Q12888;Q12888-2;A6NNK5;F8VY86 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 118.46 109.1 3 3.0462E-11 5 74798 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.427 78.853 26386000 3197200 5244900 4660000 4176400 3362600 5745000 8089 1063 7979 35816;35817;35818;35819;35820;35821 23634;23635;23636;23637;23638 23636 4 TSHLAALLK Unmodified 952.57057 0.57056597 255 C9JJU9;Q96P11-2;G3V0G9;Q96P11;Q96P11-4;Q96P11-3;Q63ZY6;Q63ZY6-5;Q63ZY6-6;Q63ZY6-2 NSUN5;NSUN5P2 Putative methyltransferase NSUN5;Putative methyltransferase NSUN5C yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 95.454 93.372 2 0.014268 1 63990 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.264 38.717 2532100 0 1074000 0 0 0 1458100 8090 255 7980 35822;35823 23639 23639 1 TSHPVVASTWPVHR Unmodified 1572.8161 0.8161094 1576 Q9P275;Q9P275-2;E9PEW0 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 3 100.08 93.361 2;3 6.0762E-20 5 62647 20150910_Q1_SA_NiHu_Masterprac_group10_B 107.65 83.146 54869000 4225900 6019100 3605400 3074200 7520800 30423000 8091 1576 7981 35824;35825;35826;35827;35828;35829;35830;35831 23640;23641;23642;23643;23644 23644 5 TSHPVVASTWPVHRAR Unmodified 1799.9543 0.95433422 1576 Q9P275;Q9P275-2;E9PEW0 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 86.21 78.615 4 0.0011901 6 54203 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.875 66.774 14472000 1695800 2053900 3298300 2230500 3004300 2188800 8092 1576 7982 35832;35833;35834;35835;35836;35837 23645;23646;23647;23648;23649;23650 23647 6 TSHSSTEACCELCGLYFENRK Unmodified 2548.0781 0.078092039 212 B7ZM82;B3KVH1;O95785;O95785-2 WIZ Protein Wiz yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 130.88 120.48 3;4 1.4186E-91 4 80248 20150910_Q1_SA_NiHu_Masterprac_group15_C 126.8 116.65 85881000 29168000 7679100 37510000 2916000 8608100 0 8093 212 7983 35838;35839;35840;35841;35842 23651;23652;23653;23654 23652 4 TSIEVKATENCAK Unmodified 1449.7133 0.71334339 1118 Q14966-3;Q14966;Q14966-4 ZNF638 Zinc finger protein 638 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 61.871 54.486 2;3 0.0092259 3 45516 20150910_Q1_SA_NiHu_Masterprac_group13_C 56.551 21.652 1938800 677530 0 712080 549170 0 0 8094 1118 7984 35843;35844;35845 23655;23656;23657 23656 3 TSILAVSDVSSSKPSIK Unmodified 1717.9462 0.9461801 1118 Q14966-3;Q14966;Q14966-5;F5H6M8;E7EUZ3 ZNF638 Zinc finger protein 638 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 129.1 129.1 3 3.5568E-08 1 82208 20150910_Q1_SA_NiHu_Masterprac_group13_B 94.007 54.49 5001200 0 0 0 5001200 0 0 8095 1118 7985 35846 23658 23658 1 TSLAGDTSNSSSPASTGAK Unmodified 1737.8017 0.80170071 501 F5GZS2;H0Y6T5;H0Y4F5;H0Y314;H0Y390;Q9UPN3-4;F5GZL7;Q9UPN3-3;Q9UPN3-2;F8W8Q1;Q9UPN3-5;Q9UPN3;H3BPE1;H3BQK9 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 61.793 53.782 2 0.0008819 4 43604 20150910_Q1_SA_NiHu_Masterprac_group15_C 61.87 50.766 3210600 486980 543290 640320 0 409550 1130400 8096 501 7986 35847;35848;35849;35850;35851 23659;23660;23661;23662 23661 4 TSLEASMEASPK Unmodified 1249.586 0.58601761 1280 Q8IWC1-2;Q8IWC1;H7BY77;Q8IWC1-3 MAP7D3 MAP7 domain-containing protein 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 94.138 86.597 2 0.025892 1 59332 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.356 32.145 3259800 0 355410 372960 324880 488830 1717700 8097 1280 7987 35852;35853;35854;35855;35856 23663 23663 1 TSLSANNATLEK Unmodified 1247.6357 0.635745 335 E5RIH2;E5RI30;E7EX27;E3W978;O75330-4;O75330-2;O75330;O75330-3 HMMR Hyaluronan mediated motility receptor yes no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 77.895 70.535 2 0.0017943 2 48811 20150910_Q1_SA_NiHu_Masterprac_group13_B 78.705 49.801 6675400 0 1049700 988190 1002900 2183800 1450700 8098 335 7988 35857;35858;35859;35860;35861 23664;23665 23664 2 TSLYFSSK Unmodified 931.4651 0.46509784 769 O95243-2 MBD4 Methyl-CpG-binding domain protein 4 no no 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 94.289 88.193 2 0.014732 2 59965 20150910_Q1_SA_NiHu_Masterprac_group13_B 87.639 80.36 12893000 1212000 1123600 0 1448500 3698600 5410200 8099 769 7989 35862;35863;35864;35865;35866 23666;23667 23666 2 TSLYFSSKYNK Unmodified 1336.6663 0.66631685 769 O95243-2 MBD4 Methyl-CpG-binding domain protein 4 no no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 98.081 90.034 2 0.0023243 2 67828 20150910_Q1_SA_NiHu_Masterprac_group13_C 93.839 74.383 10124000 1355900 1171800 1420100 1987900 2196500 1991600 8100 769 7990 35867;35868;35869;35870;35871;35872 23668;23669 23668 2 TSNEVQYDQRLFNQSK Unmodified 1955.9337 0.93371793 583 Q13573;G3V3A4;G3V4X8 SNW1 SNW domain-containing protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 2 114.3 105.93 2;3 0.0012911 5 72496 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.316 66.258 23711000 2754400 5318200 2642200 1001700 1888500 10106000 8101 583 7991 35873;35874;35875;35876;35877;35878;35879 23670;23671;23672;23673;23674 23671 5 TSNFVPSSANMQYQGQQMK Unmodified 2144.9619 0.96192329 607 H0Y3K4;Q96EV2 RBM33 RNA-binding protein 33 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 129.36 119.03 2 0.00014412 2 84620 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.01 75.384 9817100 0 496550 4321800 0 2083000 2915800 8102 607 7992 35880;35881;35882;35883 23675;23676 23676 2 TSNIRANFENLAK Unmodified 1476.7685 0.76849051 1104 Q14247;Q14247-3;Q14247-2;E9PKG3;E9PP90;B4E358;H0YCD9 CTTN Src substrate cortactin yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 118.79 107.43 3 0.015555 1 70623 20150910_Q1_SA_NiHu_Masterprac_group10_B 51.463 28.372 2795800 1096000 918370 781400 0 0 0 8103 1104 7993 35884;35885;35886 23677 23677 1 TSPASLDFPESQK Unmodified 1405.6725 0.67252444 1399 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 1 1 1 118.02 109.7 2 0.00074044 6 73390 20150910_Q1_SA_NiHu_Masterprac_group10_C 92.151 77.52 35875000 6494900 6019800 6334600 4830100 4159700 8035700 8104 1399 7994 35887;35888;35889;35890;35891;35892;35893 23678;23679;23680;23681;23682;23683 23683 6 TSPEMDIQNPDDGAR Unmodified 1644.705 0.70496355 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 101.55 91.974 2 0.0029233 2 62841 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.079 49.771 4606600 0 1816200 587740 0 868810 1333800 8105 919;920 7995 35894;35895;35896;35897 23684;23685 23684 2 TSPEMDIQNPDDGARKPIPR Oxidation (M) 2252.0855 0.085543904 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 1 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 2 2 1 2 2 90.231 81.884 4 0.019714 4 56548 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.083 28.158 18725000 1759700 3963400 4151700 982210 3316300 4552200 8106 919;920 7996 35898;35899;35900;35901;35902;35903;35904;35905;35906;35907 23686;23687;23688;23689 23688 109 4 TSPEMDIQNPDDGARKPIPR Unmodified 2236.0906 0.090629281 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 103.72 95.309 3;4 0.0010899 6 64986 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.541 60.541 260750000 49428000 40991000 35652000 12588000 37266000 84826000 8107 919;920 7996 35908;35909;35910;35911;35912;35913;35914;35915;35916;35917;35918;35919 23690;23691;23692;23693;23694;23695 23690 6 TSPENVQDRFALVTPK Unmodified 1800.937 0.9370124 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 131.65 121.25 3 0.00011761 3 78107 20150910_Q1_SA_NiHu_Masterprac_group10_C 87.083 56.747 76223000 32782000 13357000 13220000 12990000 3874400 0 8108 945 7997 35920;35921;35922;35923;35924 23696;23697;23698 23698 3 TSPENVQDRFALVTPKK Unmodified 1929.032 0.031975415 945 P49792 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 2 2 1 2 123.73 111.94 3;4 0.0084573 5 72994 20150910_Q1_SA_NiHu_Masterprac_group13_B 43.764 19.383 49517000 8021100 8474100 27108000 3971300 1942900 0 8109 945 7998 35925;35926;35927;35928;35929;35930;35931;35932;35933 23699;23700;23701;23702;23703 23699 5 TSPGRVDLPGSSTTLTK Unmodified 1715.9054 0.90537792 257 H7BZX1;H7C1R7;H7BZK1;H7BXR3;E9PAS5;O94875-5;O94875-3;C9JKV9;O94875-2;G3XAI0;O94875-4;H7BXR4;E9PAW4;O94875-7;O94875 SORBS2 Sorbin and SH3 domain-containing protein 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 108.47 101.42 3 0.0092594 1 69270 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.045 15.233 3505600 0 0 1217800 745210 0 1542700 8110 257 7999 35934;35935;35936 23704 23704 1 TSQLGDSPFYPGK Unmodified 1395.667 0.66704513 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 126.46 118.22 2 4.921E-24 5 78050 20150910_Q1_SA_NiHu_Masterprac_group10_B 115.57 100.41 34471000 0 4706900 13565000 2297400 6147700 7753700 8111 531 8000 35937;35938;35939;35940;35941 23705;23706;23707;23708;23709 23709 4 TSQVGAASAPAKESPRK Unmodified 1683.8904 0.89039656 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 2 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 39.14 34.285 3 0.022122 2 23792 20150910_Q1_SA_NiHu_Masterprac_group10_B 50.827 32.004 4500200 841380 388850 852410 803810 952420 661350 8112 383;1082 8001 35942;35943;35944;35945;35946;35947 23710;23711 23711 1 TSSEASVSSSVAK Unmodified 1238.599 0.59902514 1560 Q9NXV6 CDKN2AIP CDKN2A-interacting protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 50.536 44.662 2 5.7312E-16 8 32134 20150910_Q1_SA_NiHu_Masterprac_group15_B 112.02 78.153 16283000 1931300 2246600 6401900 1134500 2036300 2532700 8113 1560 8002 35948;35949;35950;35951;35952;35953 23712;23713;23714;23715;23716;23717;23718;23719 23715 7 TSSETNSTTSRVMEEK Unmodified 1785.8051 0.80507153 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 59.474 53.809 3 0.0047388 2 37921 20150910_Q1_SA_NiHu_Masterprac_group13_B 50.806 28.864 3821400 0 1534400 1129000 1158000 0 0 8114 1325 8003 35954;35955;35956 23720;23721 23720 2 TSSGDASSLSIEETNKLR Unmodified 1893.928 0.92796385 713 O43290;E9PQI8 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 104.46 102.95 3 0.0057996 1 68050 20150910_Q1_SA_NiHu_Masterprac_group10_B 46.162 29.022 1800400 0 1800400 0 0 0 0 8115 713 8004 35957 23722 23722 1 TSSGLSNSFAGK Unmodified 1154.5568 0.5567664 1573 Q9P0U3;Q9P0U3-2;F8VRZ8 SENP1 Sentrin-specific protease 1 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 75.888 70.193 2 6.4817E-12 5 50098 20150910_Q1_SA_NiHu_Masterprac_group10_C 108.56 81.778 13888000 1780900 1941400 0 1561200 3391300 5212800 8116 1573 8005 35958;35959;35960;35961;35962 23723;23724;23725;23726;23727 23727 5 TSSGTSIAGNPFQAK Unmodified 1464.7209 0.72087161 1567 Q9NZC9;C9JP32;C9J8F8;C9J6I8 SMARCAL1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 116.58 106.48 2 0.013429 2 72789 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.54 33.482 4697500 0 1019400 896160 0 787690 1994300 8117 1567 8006 35963;35964;35965;35966 23728;23729 23728 2 TSSGTSLSAMHSSGSSGK Unmodified 1667.7421 0.74207734 1063 Q12888;Q12888-2;A6NNK5;F8VY86 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 51.216 44.097 3 0.0015481 1 36021 20150910_Q1_SA_NiHu_Masterprac_group13_C 54.281 54.281 3234500 0 920530 819730 0 511510 982690 8118 1063 8007 35967;35968;35969;35970 23730 23730 1 TSSNNNSMVSNTLAK Unmodified 1566.7308 0.73078437 736 O60934;F5H3R2 NBN Nibrin yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 83.791 76.086 2 6.0336E-05 8 52367 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.768 88.768 25507000 3413100 2096100 2703100 2666100 6622300 8005800 8119 736 8008 35971;35972;35973;35974;35975;35976;35977 23731;23732;23733;23734;23735;23736;23737;23738 23733 8 TSTILAAAR Unmodified 902.51853 0.5185304 894 P35249;C9JZI1;C9JGY5;F8WE44;C9JXZ7;C9JTT7;C9J8M3 RFC4 Replication factor C subunit 4 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 85.2 75.95 2 0.016863 1 52702 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.325 25.863 7302800 0 1063000 859710 0 1360300 4019800 8120 894 8009 35978;35979;35980;35981 23739 23739 1 TSTKLHVGNISPTCTNK Unmodified 1856.9414 0.94144585 1457 Q9BWF3;E9PB51;E7EQS3;Q9BWF3-3;D6R9K7;Q9BWF3-2 RBM4 RNA-binding protein 4 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 81.99 74.997 3 0.0018531 2 52115 20150910_Q1_SA_NiHu_Masterprac_group10_C 79.347 58.033 2554100 636730 722280 937490 257590 0 0 8121 1457 8010 35982;35983;35984;35985 23740;23741 23741 2 TSTTGVATTQSPTPR Unmodified 1503.7529 0.75290002 460 E9PMS6;Q8WWI1-3;E9PMT2;Q8WWI1;E9PLH4;Q8WWI1-4;F8WD26;Q8WWI1-2 LMO7 LIM domain only protein 7 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 62.241 56.024 2 0.016737 1 39447 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.045 30.299 3371000 0 895740 745890 0 0 1729300 8122 460 8011 35986;35987;35988 23742 23742 1 TSVCALKPK Unmodified 1002.5532 0.55320134 1467 Q9BYB4;Q9BYB4-2 GNB1L Guanine nucleotide-binding protein subunit beta-like protein 1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 55.167 47.681 2 0.0051106 1 39288 20150910_Q1_SA_NiHu_Masterprac_group13_C 106.68 70.236 2304200 418790 973680 911780 0 0 0 8123 1467 8012 35989;35990;35991 23743 23743 1 TSVQTEDDQLIAGQSAR Unmodified 1817.8755 0.87553435 161 G3XAM7;B4E2G8;P35221;F6XBD8;P35221-2;Q8N1C0;F8W845;P26232-4;P26232-6;P26232-3;P26232-2;P26232-5;P26232 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 107.01 98.341 2 0.0019754 3 66862 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.081 32.147 4261700 733720 1370100 0 0 933350 1224500 8124 161 8013 35992;35993;35994;35995 23744;23745;23746 23744 3 TTAARPTFEPARGGR Acetyl (Protein N-term) 1628.8383 0.83830141 1569 Q9P013 CWC15 Spliceosome-associated protein CWC15 homolog yes yes 1 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 87.576 79.898 3 0.013201 1 61584 20150910_Q1_SA_NiHu_Masterprac_group13_C 45.873 45.873 53531000 3935200 10327000 8155200 4896500 11601000 14616000 8125 1569 8014 35996;35997;35998;35999;36000;36001 23747 23747 1 TTASEPVEQSEATSK Unmodified 1563.7264 0.7264105 1125 Q15007 WTAP Pre-mRNA-splicing regulator WTAP yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 52.623 46.727 2 0.00055545 3 33464 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.031 56.034 3971800 0 852590 369060 345260 566800 1838100 8126 1125 8015 36002;36003;36004;36005;36006 23748;23749;23750 23748 3 TTASEPVEQSEATSKDCSR Unmodified 2081.9171 0.91714117 1125 Q15007 WTAP Pre-mRNA-splicing regulator WTAP yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 54.451 49.554 3 0.02293 1 35338 20150910_Q1_SA_NiHu_Masterprac_group15_B 36.451 23.933 898400 0 0 0 121510 290120 486770 8127 1125 8016 36007;36008;36009 23751 23751 1 TTCSRQFTSSSSMK Acetyl (Protein N-term) 1648.7185 0.71850513 286;297 P02533;CON__P02533;P08779;CON__P08779 KRT14;KRT16 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16 no no 1 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 83.06 77.011 2 0.0018195 3 59928 20150910_Q1_SA_NiHu_Masterprac_group13_C 69.261 55.515 80867000 0 0 17742000 55093000 0 8031800 + 8128 286;297 8017 36010;36011;36012 23752;23753;23754 23754 3 TTDDTTTDNYIAQGK Unmodified 1642.7322 0.73222416 1248 Q7Z2T5 TRMT1L TRMT1-like protein yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 78.875 70.464 2 1.6762E-124 5 54244 20150910_Q1_SA_NiHu_Masterprac_group15_C 148.85 124.92 68913000 3036300 0 13318000 5561000 16603000 30395000 8129 1248 8018 36013;36014;36015;36016;36017 23755;23756;23757;23758;23759 23759 5 TTDDTTTDNYIAQGKRK Unmodified 1926.9283 0.9282982 1248 Q7Z2T5 TRMT1L TRMT1-like protein yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 59.646 53.02 3;4 0.0014233 7 39504 20150910_Q1_SA_NiHu_Masterprac_group10_C 58.885 41.019 14721000 2117200 2275700 3929600 2968600 1307000 2122900 8130 1248 8019 36018;36019;36020;36021;36022;36023;36024;36025;36026;36027;36028;36029 23760;23761;23762;23763;23764;23765;23766 23765 7 TTDMAPSKETEMALAK Unmodified 1722.8168 0.81682219 388 E7EVA0;P27816-6;P27816;P27816-2;P27816-5;B9ZVR1;H7C456 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 113.21 95.962 3 0.016556 1 69562 20150910_Q1_SA_NiHu_Masterprac_group15_C 41.838 25.366 1239700 0 0 0 0 1239700 0 8131 388 8020 36030 23767 23767 1 TTECKQNESTIVEPK Unmodified 1762.8407 0.84072875 1222 Q6KC79-2;Q6KC79;Q6KC79-3 NIPBL Nipped-B-like protein yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 61.368 53.377 3 0.0066515 2 38051 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.03 32.208 4804400 648000 862390 557340 0 997240 1739400 8132 1222 8021 36031;36032;36033;36034;36035 23768;23769 23768 1 TTEINRLPSANQGSPFK Unmodified 1858.9537 0.95372509 1176 Q56NI9;E5RFE4;E5RFP7;E5RIE3 ESCO2 N-acetyltransferase ESCO2 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 122.04 113.28 2;3 2.1894E-08 7 75371 20150910_Q1_SA_NiHu_Masterprac_group10_C 94.454 60.022 63394000 11289000 10100000 21583000 3546100 3049600 13826000 8133 1176 8022 36036;36037;36038;36039;36040;36041;36042 23770;23771;23772;23773;23774;23775;23776 23776 7 TTESHMDWEK Unmodified 1262.5238 0.52375171 455 E9PKP7;P17480-2;P17480;E9PMM2 UBTF Nucleolar transcription factor 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 64.569 57.801 3 0.020391 3 46158 20150910_Q1_SA_NiHu_Masterprac_group15_C 59.908 36.535 4159900 480260 927040 0 0 1079000 1673600 8134 455 8023 36043;36044;36045;36046 23777;23778;23779 23778 3 TTEVTGTGLGRNRK Unmodified 1488.8009 0.80085327 1345 Q8WYP5;Q8WYP5-3;Q8WYP5-2 AHCTF1 Protein ELYS yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 41.285 35.822 3 0.034783 1 26142 20150910_Q1_SA_NiHu_Masterprac_group10_C 50.149 15.454 565620 565620 0 0 0 0 0 8135 1345 8024 36047 23780 23780 1 TTFQENTQSISVR Unmodified 1509.7423 0.74233534 23 A6NHR9;A6NHR9-2;A6NHR9-3 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 109.26 98.722 2 0.0030946 3 65547 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.104 48.285 4713000 702970 1841200 484000 0 544520 1140300 8136 23 8025 36048;36049;36050;36051;36052 23781;23782;23783 23783 3 TTGDKTVEAPLVTEEK Unmodified 1716.8782 0.87816011 1422 Q96T58 SPEN Msx2-interacting protein yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 105.14 87.951 3 0.0046382 1 66544 20150910_Q1_SA_NiHu_Masterprac_group13_C 51.004 27.826 592150 0 0 592150 0 0 0 8137 1422 8026 36053 23784 23784 1 TTGEVVSGVVSK Unmodified 1161.6241 0.62411768 1093 Q14008-2;Q14008;Q14008-3;E9PQH5;E7ER31 CKAP5 Cytoskeleton-associated protein 5 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 86.016 76.922 2 0.0019196 2 53140 20150910_Q1_SA_NiHu_Masterprac_group10_B 86.288 54.53 4587600 532960 1716300 766970 0 758760 812660 8138 1093 8027 36054;36055;36056;36057;36058 23785;23786 23786 2 TTGNATVDHLSK Unmodified 1242.6204 0.62042929 1043 Q06587-2;Q06587 RING1 E3 ubiquitin-protein ligase RING1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 2 51.526 43.999 2;3 0.00022874 8 31742 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.417 71.663 7259600 573340 1154800 2326600 0 1120300 2084600 8139 1043 8028 36059;36060;36061;36062;36063;36064;36065;36066 23787;23788;23789;23790;23791;23792;23793;23794 23790 8 TTIYEIQDDRGK Unmodified 1437.71 0.70997257 1155 Q16666-3;Q16666-2;Q16666;H3BLV7;E7EPR3;H3BR88 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 3 2 1 90.858 81.9 2;3 5.7384E-18 12 56144 20150910_Q1_SA_NiHu_Masterprac_group15_B 113.22 88.809 29153000 6747700 2872500 3794800 4396900 7943500 3398000 8140 1155 8029 36067;36068;36069;36070;36071;36072;36073;36074;36075;36076;36077;36078;36079;36080 23795;23796;23797;23798;23799;23800;23801;23802;23803;23804;23805;23806 23798 12 TTKIPCDSPQSDPVDTPTSTK Unmodified 2274.0686 0.068556435 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 94.808 86.913 3 1.0252E-14 9 65668 20150910_Q1_SA_NiHu_Masterprac_group13_C 90.06 90.06 30809000 3781300 5244600 3954500 1758400 4665100 11405000 8141 919;920 8030 36081;36082;36083;36084;36085;36086 23807;23808;23809;23810;23811;23812;23813;23814;23815 23809 9 TTKIPCKSSPELEDTATSSK Unmodified 2179.0678 0.067828154 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching 2 1 1 79.463 71.18 3;4 0.00059755 3 50342 20150910_Q1_SA_NiHu_Masterprac_group10_C 64.346 45.881 5936200 4735000 0 1061200 139990 0 0 8142 919;920 8031 36087;36088;36089;36090 23816;23817;23818 23818 3 TTKMPCESSPPESADTPTSTR Unmodified 2279.0046 0.00457597 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 86.619 75.256 3 0.017505 1 51903 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.373 28.11 6050500 0 0 1483900 0 2143500 2423100 8143 919;920 8032 36091;36092;36093 23819 23819 1 TTLFTQAAHGGQASLMK Unmodified 1760.888 0.88795372 1609 Q9ULM3;H0Y6M6 YEATS2 YEATS domain-containing protein 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 127.53 127.23 3 0.009429 1 81086 20150910_Q1_SA_NiHu_Masterprac_group10_B 42.314 21.73 2201400 0 1634500 0 566910 0 0 8144 1609 8033 36094;36095 23820 23820 1 TTLILPTQQVR Unmodified 1268.7452 0.74523587 149 B4DZR9;Q9UQR0;B4DRC2 SCML2 Sex comb on midleg-like protein 2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 132.22 121.79 2 1.1991E-41 5 84428 20150910_Q1_SA_NiHu_Masterprac_group13_B 131.82 98.761 119220000 56745000 10058000 13504000 30575000 8342800 0 8145 149 8034 36096;36097;36098;36099;36100 23821;23822;23823;23824;23825 23821 5 TTLILPTQQVRR Unmodified 1424.8463 0.8463469 149 B4DZR9;Q9UQR0;B4DRC2 SCML2 Sex comb on midleg-like protein 2 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 3 119.15 110.72 2;3 0.00010278 7 75819 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.171 46.723 75053000 13913000 6809800 12710000 6951300 2087700 32581000 8146 149 8035 36101;36102;36103;36104;36105;36106;36107;36108;36109;36110;36111;36112 23826;23827;23828;23829;23830;23831;23832 23829 6 TTPNKTPPGADPKQLER Acetyl (Protein N-term) 1890.9799 0.97993984 319 D6RB36;D6R9Q5;D6RD74;D6RA92;Q9UM13 ANAPC10 Anaphase-promoting complex subunit 10 yes no 1 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 91.673 82.465 3 0.0015559 2 56096 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.379 55.589 6635600 279800 3484300 0 0 2871600 0 8147 319 8036 36113;36114;36115 23833;23834 23834 2 TTPSQFSTLK Unmodified 1108.5764 0.57643921 1222 Q6KC79-2;Q6KC79 NIPBL Nipped-B-like protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 94.956 87.336 2 0.013087 1 59803 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.65 27.302 8066200 0 1112700 679470 483620 1525500 4264800 8148 1222 8037 36116;36117;36118;36119;36120 23835 23835 1 TTPSYVAFTDTER Unmodified 1486.694 0.69398816 824;619;846 P11142;E9PKE3;P11142-2;E9PNE6;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;P54652;E9PI65;F8W1P1;B4DXY3;F8WEE3;Q53FA3;P34931;H0YIE7;B3KUS2;E7EP11;P17066;P48741;P08107;H0YG33;F8VZJ4;F5H1D3;F5GZ62 HSPA8;HSPA2;HSPA1L;HSPA6;HSPA7;HSPA1A Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 1-like;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1A/1B no no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 128.91 118.58 2 0.036805 2 80450 20150910_Q1_SA_NiHu_Masterprac_group15_C 42.317 10.969 7424400 0 1375500 3068500 0 1207800 1772600 8149 824;846;619 8038 36121;36122;36123;36124 23836;23837 23836 2 TTQFSCTLGEK Unmodified 1270.5864 0.58635197 1027 Q01469 FABP5 Fatty acid-binding protein, epidermal yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 93.45 85.614 2 5.6913E-42 4 58119 20150910_Q1_SA_NiHu_Masterprac_group13_B 134.49 109.79 7997600 970870 861080 1975200 2269700 637060 1283800 8150 1027 8039 36125;36126;36127;36128;36129;36130 23838;23839;23840;23841 23839 4 TTQIINITMTK Unmodified 1262.6904 0.69042311 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;Q9BTE9 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 132.25 131.95 2 0.0011139 2 85027 20150910_Q1_SA_NiHu_Masterprac_group10_B 114.72 58.678 13592000 0 5725500 0 7866700 0 0 8151 1121 8040 36131;36132 23842;23843 23843 1 TTQIPQYLYEGGISR Unmodified 1724.8733 0.87334951 1496 Q9H6R0 DHX33 Putative ATP-dependent RNA helicase DHX33 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 133.57 133.57 2 0.025369 1 86701 20150910_Q1_SA_NiHu_Masterprac_group13_B 54.859 47.327 6801700 0 0 0 6801700 0 0 8152 1496 8041 36133 23844 23844 0 TTQNIATGTKNTLGSGVTGAANVAK Unmodified 2374.2452 0.24521567 1413 Q96Q06-2 PLIN4 Perilipin-4 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 120.44 109.18 3 0.0036229 3 78510 20150910_Q1_SA_NiHu_Masterprac_group13_C 46.22 37.804 12664000 3082400 1628700 2846200 0 2856900 2250100 8153 1413 8042 36134;36135;36136;36137;36138 23845;23846;23847 23845 3 TTSESSSSPSASLKGPTSQESQLNAMK Unmodified 2739.2869 0.28688207 1375 Q96CB8 INTS12 Integrator complex subunit 12 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 112.86 103.53 3 0.00058531 4 70002 20150910_Q1_SA_NiHu_Masterprac_group10_C 49.662 35.721 6667000 2033200 1053600 1630300 0 0 1949900 8154 1375 8043 36139;36140;36141;36142 23848;23849;23850;23851 23851 4 TTSILCLAR Unmodified 1033.559 0.559015 895 P35250-2;P35250 RFC2 Replication factor C subunit 2 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 131.68 131.38 2 0.012149 1 84755 20150910_Q1_SA_NiHu_Masterprac_group13_B 81.972 49.241 29177000 0 23334000 0 5843700 0 0 8155 895 8044 36143;36144 23852 23852 1 TTSIRQFTSSSSIK Acetyl (Protein N-term) 1583.8155 0.81550028 304 Q04695;CON__Q04695;H9KV34;A8MW45;F5H7G6;C9JH30 KRT17 Keratin, type I cytoskeletal 17 yes no 1 0 1 By matching By matching By matching By MS/MS By matching By matching 1 131.09 131.09 2 7.5885E-30 1 84074 20150910_Q1_SA_NiHu_Masterprac_group13_B 116.78 93.184 13569000 0 0 0 13569000 0 0 + 8156 304 8045 36145 23853 23853 1 TTSIRQFTSSSSIKGSSGLGGGSSR Acetyl (Protein N-term) 2486.2361 0.23610754 304 Q04695;CON__Q04695;H9KV34;A8MW45;F5H7G6;C9JH30 KRT17 Keratin, type I cytoskeletal 17 yes no 1 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 130.91 130.61 3 2.4523E-284 1 83884 20150910_Q1_SA_NiHu_Masterprac_group13_B 164.27 142.04 135960000 0 28978000 0 106980000 0 0 + 8157 304 8046 36146;36147 23854 23854 1 TTSPLEEEER Unmodified 1189.5463 0.54626129 364 E7EQT4;Q9UKV3;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 69.077 63.481 2 0.0097058 3 49508 20150910_Q1_SA_NiHu_Masterprac_group15_C 75.229 54.23 15739000 2494600 3039500 0 1372400 3525900 5306300 8158 364 8047 36148;36149;36150;36151;36152 23855;23856;23857 23856 3 TTSSANNPNLMYQDECDRR Unmodified 2270.9644 0.96444249 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;G5E9L5;Q9UQL5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 89.134 81.864 3 0.0069295 3 56016 20150910_Q1_SA_NiHu_Masterprac_group15_B 39.91 30.158 6462500 931640 878900 0 0 1722800 2929200 8159 1361;629 8048 36153;36154;36155;36156 23858;23859;23860 23858 3 TTTAAAVASTGPSSR Unmodified 1376.6896 0.68957148 388 E7EVA0;P27816-6;P27816;P27816-2;P27816-4;E9PGM5;P27816-5;B9ZVR1;H0Y2V1;F8W9U4;H7C4C5;B5MEG9 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 63.401 55.632 2 0.017816 1 41283 20150910_Q1_SA_NiHu_Masterprac_group10_C 43.557 17.198 858400 858400 0 0 0 0 0 8160 388 8049 36157 23861 23861 1 TTTALISLSCEK Unmodified 1322.6752 0.67516697 1660 Q9Y620 RAD54B DNA repair and recombination protein RAD54B yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 127.5 124.72 2 0.010456 1 84481 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.595 33.121 5517200 0 445760 0 0 0 5071500 8161 1660 8050 36158;36159 23862 23862 1 TTTGPPHLVPPQPLPR Unmodified 1706.9468 0.94678922 1618 Q9UNY4;Q9UNY4-2 TTF2 Transcription termination factor 2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 130.97 128.18 3 0.00085132 2 83352 20150910_Q1_SA_NiHu_Masterprac_group10_B 80.371 67.223 11849000 0 8115100 0 0 0 3733600 8162 1618 8051 36160;36161 23863;23864 23864 2 TTTLSGTAPAAGVVPSR Unmodified 1584.8471 0.84713476 388 E7EVA0;P27816-6;P27816;P27816-2;P27816-4;E9PGM5;P27816-5;B9ZVR1;H0Y2V1;B4DSQ1;F8W9U4;H7C4C5;B5MEG9 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 115.59 106.62 2 0.0094057 2 71838 20150910_Q1_SA_NiHu_Masterprac_group10_C 43.794 28.632 4781300 2125800 0 0 748400 357950 1549100 8163 388 8052 36162;36163;36164;36165 23865;23866 23866 2 TTTLSGTAPAAGVVPSRVK Unmodified 1812.0105 0.010511692 388 E7EVA0;P27816-6;P27816;P27816-2;P27816-4;E9PGM5;P27816-5;B9ZVR1;H0Y2V1;B4DSQ1;F8W9U4;H7C4C5;B5MEG9 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 2 2 113.28 104.86 2;3 4.0988E-51 11 71748 20150910_Q1_SA_NiHu_Masterprac_group15_B 114.56 95.738 70893000 16177000 5392200 7456800 8846900 19953000 13067000 8164 388 8053 36166;36167;36168;36169;36170;36171;36172;36173;36174;36175;36176;36177;36178 23867;23868;23869;23870;23871;23872;23873;23874;23875;23876;23877 23871 9 TTTPGPSLSQGVSVDEK Unmodified 1701.8421 0.84210896 736 O60934;F5H3R2 NBN Nibrin yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 114.18 104.15 2 0.00056793 2 71108 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.207 56.82 12939000 0 3381600 635980 0 1910300 7011500 8165 736 8054 36179;36180;36181;36182 23878;23879 23878 2 TTTPNMNPAINYQPQSSSSVPCQR Unmodified 2677.2224 0.22244809 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 130.32 125.36 3 2.0152E-07 2 85057 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.532 52.968 15010000 0 0 0 0 0 15010000 8166 1344 8055 36183 23880;23881 23880 2 TTTTNTQVEGDDEAAFLER Unmodified 2096.9498 0.94982151 396 Q05682-5;E9PGZ1;Q05682-4;F5H1Z9;E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;C9J813;C9JEK3 CALD1 Caldesmon yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 131.17 125.74 2 6.6644E-18 3 83359 20150910_Q1_SA_NiHu_Masterprac_group10_B 100.39 72.357 15363000 6533700 6490800 0 2338200 0 0 8167 396 8056 36184;36185;36186 23882;23883;23884 23883 3 TTVKELIS Unmodified 889.51205 0.51204804 901 P35659;P35659-2;B4DFG0 DEK Protein DEK yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 102.21 92.795 2 0.037817 1 69332 20150910_Q1_SA_NiHu_Masterprac_group13_C 88.177 46.729 119030000 25789000 0 17895000 20355000 480550 54507000 8168 901 8057 36187;36188;36189;36190;36191 23885 23885 1 TTVQQEPLESGAK Unmodified 1386.6991 0.69907354 941 P49750-3;P49750;P49750-4;F8VU51 YLPM1 YLP motif-containing protein 1 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 2 1 74.094 62.855 2 1.7168E-09 3 44050 20150910_Q1_SA_NiHu_Masterprac_group15_B 104.59 62.124 2396700 206050 0 282120 0 1256900 651640 8169 941 8058 36192;36193;36194;36195;36196 23886;23887;23888 23886 2 TTVQQEPLESGAKNK Unmodified 1628.837 0.836964 941 P49750-3;P49750;P49750-4;F8VU51 YLPM1 YLP motif-containing protein 1 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 59.104 50.457 3 0.0024911 4 37667 20150910_Q1_SA_NiHu_Masterprac_group10_C 66.215 42.259 5408100 1956300 0 727320 783810 1940700 0 8170 941 8059 36197;36198;36199;36200 23889;23890;23891;23892 23892 4 TTYGGAAAAVRQSK Unmodified 1379.7157 0.71572665 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 2 2 2 2 2 61.053 54.318 2;3 4.0682E-124 4 38563 20150910_Q1_SA_NiHu_Masterprac_group15_B 152 109.58 39251000 2342300 5452900 5972200 6775400 9787300 8920900 8171 531 8060 36201;36202;36203;36204;36205;36206;36207;36208;36209;36210;36211;36212 23893;23894;23895;23896 23894 4 TTYSGSLGFGSSSCR Unmodified 1565.678 0.67802052 1173 Q52LG2 KRTAP13-2 Keratin-associated protein 13-2 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 103.38 103.38 2 0.0078274 1 68161 20150910_Q1_SA_NiHu_Masterprac_group13_B 49.265 36.845 776930 0 0 0 776930 0 0 8172 1173 8061 36213 23897 23897 1 TVACGGTRDQLFMQEK Unmodified 1839.8608 0.86075269 554 F8W6N6;P10244 MYBL2 Myb-related protein B yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 105.53 97.559 3 0.0362 1 66445 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.657 20.112 6040300 1027200 0 0 629690 2783400 1600000 8173 554 8062 36214;36215;36216;36217 23898 23898 1 TVAEVDSESLPSSSK Unmodified 1534.7362 0.7362469 571 F8WDY3;P28715;I3L0G8 ERCC5 DNA repair protein complementing XP-G cells yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 96.266 86.841 2 0.00050637 3 58998 20150910_Q1_SA_NiHu_Masterprac_group10_B 83.633 55.952 6588600 0 1930200 1857200 0 603780 2197400 8174 571 8063 36218;36219;36220;36221 23899;23900;23901 23901 2 TVAGGAWTYNTTSAVTVK Unmodified 1825.921 0.92102798 229 C9J4Z3;P61513 RPL37A 60S ribosomal protein L37a yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 132.37 114.63 2 0.026859 1 81423 20150910_Q1_SA_NiHu_Masterprac_group15_C 74.744 45.381 0 0 0 0 0 0 0 8175 229 8064 36222 23902 23902 1 TVANLLSGKSPRK Unmodified 1369.8041 0.80414773 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 2 By MS/MS By matching By matching By matching By MS/MS By matching 2 1 83.974 73.113 2;3 6.1615E-05 3 51329 20150910_Q1_SA_NiHu_Masterprac_group10_C 98 66.931 31874000 31388000 0 0 0 486270 0 8176 383;1082 8065 36223;36224;36225 23903;23904;23905 23905 3 TVAQSQQLETNSQR Unmodified 1588.7805 0.78051176 270 C9JU95;P40938 RFC3 Replication factor C subunit 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 57.686 51.388 2 0.0012833 1 36971 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.26 48.446 4023700 0 624560 524990 119580 785970 1968600 8177 270 8066 36226;36227;36228;36229;36230 23906 23906 1 TVAQSQQLETNSQRDFK Unmodified 1978.9708 0.97083172 270 C9JU95;P40938 RFC3 Replication factor C subunit 3 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 85.347 77.769 3 0.0023723 3 58701 20150910_Q1_SA_NiHu_Masterprac_group15_C 76.574 62.633 15751000 934860 2713000 3017400 430600 3151000 5503500 8178 270 8067 36231;36232;36233;36234;36235;36236 23907;23908;23909 23909 3 TVASRYDEYVNVK Unmodified 1542.7678 0.7678218 429 Q8WUM4;E9PFU1 PDCD6IP Programmed cell death 6-interacting protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 105.38 99.499 3 0.034005 1 67826 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.501 16.162 3361400 513200 1306800 0 0 0 1541500 8179 429 8068 36237;36238;36239 23910 23910 1 TVASSLGQIPMQRQPIQK Unmodified 1981.0779 0.077879751 184 B7Z367;Q9UL40;D6RJ07;Q9UL40-2;B7Z4J8;B7Z4N4 ZNF346 Zinc finger protein 346 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 130.7 121.62 3 4.1753E-32 5 82932 20150910_Q1_SA_NiHu_Masterprac_group10_B 107.35 81.525 66353000 0 15825000 29402000 16524000 4602700 0 8180 184 8069 36240;36241;36242;36243 23911;23912;23913;23914;23915 23914 5 TVASTAMNSQSSR Unmodified 1338.6198 0.61977736 768 O95239;O95239-2;Q2VIQ3 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 52.341 46.316 2 1.0701E-90 5 33390 20150910_Q1_SA_NiHu_Masterprac_group15_B 143.56 143.56 15486000 512700 1190500 809440 619370 1304500 11050000 8181 768 8070 36244;36245;36246;36247;36248;36249 23916;23917;23918;23919;23920 23917 5 TVATASQEIIIASTK Unmodified 1531.8457 0.84573777 643 Q12968-5;Q12968-6;Q12968-4;I3L3K7;H3BR83;H3BRS1;Q12968-3;Q12968-2;Q12968 NFATC3 Nuclear factor of activated T-cells, cytoplasmic 3 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 132.62 127.18 2 2.0434E-31 4 85029 20150910_Q1_SA_NiHu_Masterprac_group10_B 127.18 93.984 23863000 10612000 6594600 0 6656500 0 0 8182 643 8071 36250;36251;36252 23921;23922;23923;23924 23923 3 TVAVWDSETGERVK Unmodified 1575.7893 0.78928553 117 Q96DI7;B4DQJ1 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 108.12 98.02 3 0.0016899 2 66785 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.997 46.683 2761900 0 0 0 0 996170 1765700 8183 117 8072 36253;36254 23925;23926 23926 2 TVCRNQGCCGVRGQFCGPCLR Unmodified 2541.1028 0.1028242 280 C9K0Y1;Q96GN5-4;Q96GN5-2;Q96GN5 CDCA7L Cell division cycle-associated 7-like protein yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 99.689 92.57 4 0.025457 1 62085 20150910_Q1_SA_NiHu_Masterprac_group10_B 34.202 19.765 5040900 0 1347300 1425500 0 0 2268100 8184 280 8073 36255;36256;36257 23927 23927 1 TVDMESTEVFTK Unmodified 1385.6384 0.63844712 289 CON__P02663 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 131.62 115.93 2 0.032584 1 77267 20150910_Q1_SA_NiHu_Masterprac_group10_C 57.52 37.396 1561900 1561900 0 0 0 0 0 + 8185 289 8074 36258 23928 23928 0 TVEAPLVTEEK Unmodified 1214.6394 0.63943339 1422 Q96T58 SPEN Msx2-interacting protein yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 103.03 94.774 2 0.0082479 1 64668 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.385 39.471 4585000 636210 1348400 912000 0 0 1688400 8186 1422 8075 36259;36260;36261;36262 23929 23929 1 TVEEALTIKNTDIAK Unmodified 1644.8934 0.89341625 70 F5H5N2;B4DNC9;B3KQ30;Q9H1K1;B1P7G3;Q9H1K1-2 ISCU Iron-sulfur cluster assembly enzyme ISCU, mitochondrial yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 118.45 115.67 3 5.0854E-31 2 74874 20150910_Q1_SA_NiHu_Masterprac_group10_B 118.08 88.865 3278000 0 1724700 0 0 0 1553300 8187 70 8076 36263;36264 23930;23931 23931 2 TVEGEFTGVGK Unmodified 1122.5557 0.55570376 1189 Q5T280 C9orf114 Uncharacterized protein C9orf114 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 100.74 91.06 2 2.9028E-05 2 61326 20150910_Q1_SA_NiHu_Masterprac_group10_B 103.21 49.147 45178000 3688500 9786000 7286200 0 8766000 15651000 8188 1189 8077 36265;36266;36267;36268;36269 23932;23933 23933 2 TVEICPFSFDSRDKER Unmodified 1984.9313 0.93127509 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 2 By matching By MS/MS By matching By MS/MS By matching By matching 2 2 131.92 131.61 3;4 0.00058073 4 84692 20150910_Q1_SA_NiHu_Masterprac_group10_B 81.904 49.158 137050000 0 99860000 0 37186000 0 0 8189 1611 8078 36270;36271;36272;36273 23934;23935;23936;23937 23937 4 TVEPGALAVLSQLK Unmodified 1424.8239 0.82388012 630 H3BM69;H3BNZ6;Q24JQ5;Q6UXK2 ISLR2 Immunoglobulin superfamily containing leucine-rich repeat protein 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 42.002 41.575 3 0.0066917 1 29342 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.576 1.7899 6039700 0 0 0 1908500 0 4131200 8190 630 8079 36274;36275 23938 23938 1 TVETRDGQVINETSQHHDDLE Unmodified 2422.0997 0.099673643 808 P08670 VIM Vimentin yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 90.939 83.194 3;4 8.8754E-06 8 57315 20150910_Q1_SA_NiHu_Masterprac_group10_C 68.168 58.969 46012000 10440000 7822900 10613000 5767500 4728000 6640900 8191 808 8080 36276;36277;36278;36279;36280;36281;36282;36283;36284;36285;36286;36287 23939;23940;23941;23942;23943;23944;23945;23946 23946 8 TVEVGRAYFETEK Unmodified 1527.7569 0.75692277 642 H3BR35;P15170;P15170-2;H3BSV8 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 2 2 112.3 101.97 2;3 0.0029048 2 69633 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.204 39.679 10633000 279080 0 914260 971040 2083700 6385200 8192 642 8081 36288;36289;36290;36291;36292;36293;36294 23947;23948 23948 2 TVEVGRAYFETEKK Unmodified 1655.8519 0.85188578 642 H3BR35;P15170;P15170-2;H3BSV8 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 96.753 87.28 4 0.00099023 1 59601 20150910_Q1_SA_NiHu_Masterprac_group10_C 76.24 43.673 1451000 1451000 0 0 0 0 0 8193 642 8082 36295 23949 23949 1 TVEVLEPEVTK Unmodified 1242.6707 0.67073352 359 Q7L576;E7EQ04;E7EVJ5;Q96F07-2;E7EVF4;F5H583;Q96F07;E7EWA4;H0YLJ5;H0YL39 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 112.98 110.15 2 0.0036199 1 75275 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.525 81.525 6281800 0 629000 0 0 0 5652800 8194 359 8083 36296;36297 23950 23950 1 TVFAEHISDECK Unmodified 1434.6449 0.64492948 905 P39023;G5E9G0;B5MCW2;H7C422;H7C3M2;F8WCR1 RPL3 60S ribosomal protein L3 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 2 2 2 91.983 84.83 2;3 1.5946E-07 7 58140 20150910_Q1_SA_NiHu_Masterprac_group15_B 104.94 64.461 33053000 3006900 2484800 1268200 3288900 13091000 9913000 8195 905 8084 36298;36299;36300;36301;36302;36303;36304;36305;36306;36307;36308;36309 23951;23952;23953;23954;23955;23956;23957 23955 7 TVFAEHISDECKR Unmodified 1590.746 0.7460405 905 P39023;G5E9G0;B5MCW2;H7C422;H7C3M2;F8WCR1 RPL3 60S ribosomal protein L3 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 80.47 74.754 3 0.0059366 1 56925 20150910_Q1_SA_NiHu_Masterprac_group15_C 54.023 41.965 5451000 561790 766590 0 850600 1660900 1611100 8196 905 8085 36310;36311;36312;36313;36314 23958 23958 1 TVFAEHISDECKRR Unmodified 1746.8472 0.84715153 905 P39023;G5E9G0;B5MCW2;H7C422;H7C3M2;F8WCR1 RPL3 60S ribosomal protein L3 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 74.516 66.646 4 0.02661 1 51951 20150910_Q1_SA_NiHu_Masterprac_group15_C 41.383 26.413 2114000 0 0 0 634730 1479300 0 8197 905 8086 36315;36316 23959 23959 1 TVGFGTNNSEHITYLEHNPYEK Unmodified 2549.1823 0.18228106 1423 Q99459 CDC5L Cell division cycle 5-like protein yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 2 1 131.37 125.91 3;4 8.6184E-06 4 83833 20150910_Q1_SA_NiHu_Masterprac_group10_B 60.621 46.767 32128000 7406100 10911000 0 0 0 13812000 8198 1423 8087 36317;36318;36319;36320 23960;23961;23962;23963 23962 4 TVGVQGDCRSYSYVCGISSK Unmodified 2222.0096 0.0096017684 129 F8W720;B4DUT7;P49915 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 117.2 112.64 3 0.0029715 1 76917 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.288 30.393 3086300 0 0 0 0 0 3086300 8199 129 8088 36321 23964 23964 1 TVIIDHGSGFLK Unmodified 1285.703 0.7030367 1491 Q9H568 ACTL8 Actin-like protein 8 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 121.25 118.87 2 9.9483E-64 2 80851 20150910_Q1_SA_NiHu_Masterprac_group15_B 138.42 79.005 4115300 0 0 0 1276000 0 2839300 8200 1491 8089 36322;36323 23965;23966 23966 1 TVIIEQSWGSPK Unmodified 1343.7085 0.70851601 820 P10809;B7Z712;C9JL25;E7EXB4;E7ESH4;C9JL19;C9JCQ4 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 131.4 123.25 2 0.0017943 3 83015 20150910_Q1_SA_NiHu_Masterprac_group10_B 79.492 57.836 5013400 2696000 2317400 0 0 0 0 8201 820 8090 36324;36325 23967;23968;23969 23967 3 TVIKPESCVPCGK Unmodified 1473.732 0.73197035 1479 Q9H0H5;F8VRL2 RACGAP1 Rac GTPase-activating protein 1 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 81.187 73.642 3 2.094E-09 6 57880 20150910_Q1_SA_NiHu_Masterprac_group13_C 104.94 77.357 66529000 7150200 13871000 8857600 5312700 15597000 15741000 8202 1479 8091 36326;36327;36328;36329;36330;36331 23970;23971;23972;23973;23974;23975 23972 6 TVITEEFKVPDK Unmodified 1404.75 0.75004648 1394 Q96I24;A6NJ37;Q96I24-2 FUBP3 Far upstream element-binding protein 3 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 2 1 1 130.31 125.93 2;3 1.5633E-50 4 85743 20150910_Q1_SA_NiHu_Masterprac_group15_B 134.75 109.41 87821000 4875100 58963000 0 993530 0 22989000 8203 1394 8092 36332;36333;36334;36335;36336 23976;23977;23978;23979 23976 4 TVKENWKNLSDSEK Unmodified 1676.837 0.836964 1019 Q00059;A8MRB2;H7BYN3 TFAM Transcription factor A, mitochondrial yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 78.003 69.733 3 0.027624 1 49572 20150910_Q1_SA_NiHu_Masterprac_group10_C 51.939 30.078 1937300 1937300 0 0 0 0 0 8204 1019 8093 36337 23980 23980 1 TVKLKSPVLSNTTTEPASTMSPPPAK Unmodified 2681.431 0.43096753 1576 Q9P275;Q9P275-2;E9PEW0 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 126.65 117.17 4 4.2483E-05 6 80813 20150910_Q1_SA_NiHu_Masterprac_group13_C 56.562 41.472 35085000 17028000 1594600 10732000 2309100 1870100 1551400 8205 1576 8094 36338;36339;36340;36341;36342;36343 23981;23982;23983;23984;23985;23986 23982 6 TVKQEQINTEPLEDTVLSPTK Unmodified 2369.2326 0.2325853 706 O15446;O15446-2 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 133.3 117.61 3 0.00043823 1 79092 20150910_Q1_SA_NiHu_Masterprac_group10_C 56.428 39.99 15305000 15305000 0 0 0 0 0 8206 706 8095 36344 23987 23987 1 TVLCGTCGQPADK Unmodified 1405.633 0.63298458 783 P02545;P02545-3;Q6UYC3;D6RAQ3;E7EUI9 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 64.757 59.302 2 0.0044253 3 41985 20150910_Q1_SA_NiHu_Masterprac_group10_C 62.162 30.506 53284000 3117500 11601000 0 3581400 10498000 24486000 8207 783 8096 36345;36346;36347;36348;36349 23988;23989;23990 23989 3 TVLCGTCGQPADKASASGSGAQVGGPISSGSSASSVTVTR Unmodified 3751.7741 0.77412911 783 P02545;P02545-3;D6RAQ3;E7EUI9 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 130.41 113.57 3 6.8447E-33 2 76261 20150910_Q1_SA_NiHu_Masterprac_group10_C 59.793 39.428 18049000 10080000 0 7968400 0 0 0 8208 783 8097 36350;36351 23991;23992 23992 2 TVLHTGSAPSSSTPFNK Unmodified 1729.8635 0.8635131 695 O14646-2;O14646 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 106.9 90.054 3 0.036437 1 66229 20150910_Q1_SA_NiHu_Masterprac_group15_C 35.091 20.66 1462200 0 0 0 0 1462200 0 8209 695 8098 36352 23993 23993 1 TVLIACNVK Unmodified 1016.5689 0.56885141 873 P25205 MCM3 DNA replication licensing factor MCM3 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 100.65 92.54 2 0.011704 1 63079 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.75 50 38279000 3272200 4970700 5031800 950220 4695400 19359000 8210 873 8099 36353;36354;36355;36356;36357;36358 23994 23994 1 TVLIACNVKQMSK Unmodified 1490.7949 0.79490495 873 P25205 MCM3 DNA replication licensing factor MCM3 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 2 106.94 98.353 2;3 1.4327E-05 5 72437 20150910_Q1_SA_NiHu_Masterprac_group13_C 98.902 71.22 17887000 0 2279500 2314400 1309400 2531500 9452000 8211 873 8100 36359;36360;36361;36362;36363;36364;36365 23995;23996;23997;23998;23999 23995 5 TVLTGTKDAVCSGVTGAANVAK Unmodified 2119.0943 0.094317676 1413 Q96Q06-2;Q96Q06 PLIN4 Perilipin-4 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 130.16 118.68 3 3.7607E-06 2 81248 20150910_Q1_SA_NiHu_Masterprac_group13_C 74.308 46.142 12751000 0 0 4846500 0 0 7904800 8212 1413 8101 36366;36367 24000;24001 24000 2 TVLTGTKDTVCSGVTGAANVAK Unmodified 2149.1049 0.10488236 1413 Q96Q06-2;Q96Q06 PLIN4 Perilipin-4 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 121.43 113.58 3 8.1623E-92 5 80251 20150910_Q1_SA_NiHu_Masterprac_group13_C 127.37 106.8 32381000 9018100 4354800 8280200 1562000 0 9166200 8213 1413 8102 36368;36369;36370;36371;36372 24002;24003;24004;24005;24006 24003 5 TVLTGTKDTVCSGVTGAVNVAK Unmodified 2177.1362 0.13618249 1413 Q96Q06-2;Q96Q06 PLIN4 Perilipin-4 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 130.12 129.51 3 2.8103E-23 3 82913 20150910_Q1_SA_NiHu_Masterprac_group10_B 98.562 77.254 18674000 0 18674000 0 0 0 0 8214 1413 8103 36373 24007;24008;24009 24008 3 TVLTGTKDTVCSGVTSAVNVAK Unmodified 2207.1467 0.14674718 1413 Q96Q06-2;Q96Q06 PLIN4 Perilipin-4 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 2 1 130.95 130.55 2;3 1.4433E-185 2 83719 20150910_Q1_SA_NiHu_Masterprac_group10_B 152.09 138.47 120580000 0 116610000 0 3970700 0 0 8215 1413 8104 36374;36375;36376 24010;24011 24010 2 TVMDIDTSGTFNVSR Unmodified 1641.7668 0.76683553 1172 Q4VXZ8;Q9NUI1;Q9NUI1-3;H7C078 DECR2 Peroxisomal 2,4-dienoyl-CoA reductase yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 133.27 130.49 2 6.9292E-43 2 88575 20150910_Q1_SA_NiHu_Masterprac_group15_B 123.42 83.139 18170000 0 7179100 0 0 0 10991000 8216 1172 8105 36377;36378 24012;24013 24012 1 TVNGIENKSLSPDEER Unmodified 1786.8697 0.86972069 1201 Q5UIP0-2;Q5UIP0;H7C2B5 RIF1 Telomere-associated protein RIF1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 88.48 78.679 3 0.0097661 1 54043 20150910_Q1_SA_NiHu_Masterprac_group10_B 45.618 30.689 2223500 0 1245600 977940 0 0 0 8217 1201 8106 36379;36380 24014 24014 1 TVPEELVKPEELSK Unmodified 1596.8611 0.86105349 1613 Q9UMS4;H0YGF3;F5GY56 PRPF19 Pre-mRNA-processing factor 19 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 1 1 131.23 114.45 2;3 4.5256E-05 5 79959 20150910_Q1_SA_NiHu_Masterprac_group15_C 92.65 60.172 36077000 14108000 0 8323600 0 13645000 0 8218 1613 8107 36381;36382;36383;36384 24015;24016;24017;24018;24019 24016 5 TVPVEAVTSK Unmodified 1029.5706 0.57062555 1104 Q14247;Q14247-3;Q14247-2;E9PKG3;E9PP90;B4E358 CTTN Src substrate cortactin yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 79.975 72.447 2 0.0095763 3 50355 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.566 22.629 19513000 1597500 2645100 3723100 2109200 3728700 5709900 8219 1104 8108 36385;36386;36387;36388;36389;36390 24020;24021;24022 24021 3 TVQGSGHQEHINIHK Unmodified 1683.8441 0.84411507 1104 Q14247;Q14247-3;Q14247-2;H7C314 CTTN Src substrate cortactin yes no 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 42.784 37.73 4 0.023727 2 30718 20150910_Q1_SA_NiHu_Masterprac_group13_C 39.961 24.417 6122600 0 1010700 1460100 573470 950550 2127800 8220 1104 8109 36391;36392;36393;36394;36395 24023;24024 24024 2 TVRFNVLKVTK Unmodified 1303.7976 0.79760579 989 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 2 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 114.32 104.34 3 0.014667 3 69149 20150910_Q1_SA_NiHu_Masterprac_group13_B 60.08 17.278 8144800 2987800 686400 1502800 2169900 797960 0 8221 989 8110 36396;36397;36398;36399;36400 24025;24026;24027 24025 3 TVRVDPDSQNHEK Unmodified 1523.7328 0.73283328 1464 Q9BXS6-4 NUSAP1 Nucleolar and spindle-associated protein 1 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 35.391 29.8 3 0.0020236 1 23941 20150910_Q1_SA_NiHu_Masterprac_group13_C 83.869 70.768 2249900 0 1005500 1244400 0 0 0 8222 1464 8111 36401;36402 24028 24028 1 TVRVDPDSQQNHSEIK Unmodified 1851.9075 0.90750318 1463 Q9BXS6-2;Q9BXS6;E7ERR5;E9PB35 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 60.884 54.124 3;4 6.6643E-18 11 38421 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.2 73.523 53070000 1904700 12886000 9425400 2728200 5700800 20425000 8223 1463 8112 36403;36404;36405;36406;36407;36408;36409;36410;36411;36412;36413;36414 24029;24030;24031;24032;24033;24034;24035;24036;24037;24038;24039 24033 11 TVSEVSEQPKETSMTEPSEPGSKAEAK Unmodified 2862.3441 0.34406259 1601 Q9UKJ3;Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 89.077 80.305 4 0.0023824 1 55528 20150910_Q1_SA_NiHu_Masterprac_group10_C 38.279 26.475 2341700 2341700 0 0 0 0 0 8224 1601 8113 36415 24040 24040 1 TVSHLYQESISK Unmodified 1390.7092 0.70924429 1473 Q9C0D5;Q9C0D5-2 TANC1 Protein TANC1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 84.033 76.633 3 0.0013246 2 58033 20150910_Q1_SA_NiHu_Masterprac_group15_C 90.614 66.262 6189500 0 679170 1128000 737410 2149900 1495000 8225 1473 8114 36416;36417;36418;36419;36420 24041;24042 24042 2 TVSQIISLQTLKK Unmodified 1457.8817 0.88172935 753 O76021;I3L3C4;I3L3U9;I3L234 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 133.24 117.55 3 4.4613E-75 1 79022 20150910_Q1_SA_NiHu_Masterprac_group10_C 142.12 120.46 12006000 12006000 0 0 0 0 0 8226 753 8115 36421 24043 24043 1 TVSYPDVSLEEQEK Unmodified 1622.7675 0.76754703 829 P12757-5;P12757 SKIL Ski-like protein yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 131.59 115.9 2 0.0011067 1 77206 20150910_Q1_SA_NiHu_Masterprac_group10_C 73.834 46.571 2533600 2533600 0 0 0 0 0 8227 829 8116 36422 24044 24044 1 TVTAAGAENIQQK Unmodified 1329.6888 0.6888432 1159 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 67.576 58.952 2 0.029776 1 47058 20150910_Q1_SA_NiHu_Masterprac_group15_C 58.595 19.2 2303700 0 479630 492860 0 418240 913010 8228 1159 8117 36423;36424;36425;36426 24045 24045 0 TVTAAGAENIQQKTDEK Unmodified 1802.901 0.90102082 1159 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 71.946 63.859 3 0.0024916 2 51665 20150910_Q1_SA_NiHu_Masterprac_group13_C 53.168 38.566 2437300 817090 0 958370 661840 0 0 8229 1159 8118 36427;36428;36429 24046;24047 24046 2 TVTITKEDESTEK Unmodified 1479.7304 0.73043325 1542 Q9NS91;H7C3I2 RAD18 E3 ubiquitin-protein ligase RAD18 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 52.2 46.175 3 0.026375 1 37815 20150910_Q1_SA_NiHu_Masterprac_group13_C 46.069 46.069 3946500 629710 329410 828950 598940 462080 1097400 8230 1542 8119 36430;36431;36432;36433;36434;36435 24048 24048 1 TVTNAVVTVPAYFNDSQRQATK Unmodified 2409.2288 0.22883732 824 P11142;P11142-2;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PI65 HSPA8 Heat shock cognate 71 kDa protein yes no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 132.85 126.7 3 1.1799E-09 3 85713 20150910_Q1_SA_NiHu_Masterprac_group10_B 84.113 68.098 36043000 0 24994000 0 3388700 7660800 0 8231 824 8120 36436;36437;36438 24049;24050;24051 24051 3 TVTSSGVQVSCHSCK Unmodified 1635.7345 0.73448954 775 O95789-1;O95789 ZMYM6 Zinc finger MYM-type protein 6 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 53.418 47.785 3 0.0074398 1 34057 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.774 31.591 1617400 0 590870 0 0 350570 675920 8232 775 8121 36439;36440;36441 24052 24052 1 TVVNKDVFRDPALK Unmodified 1600.8937 0.89369102 982 P61353 RPL27 60S ribosomal protein L27 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 1 2 2 1 113.55 104.81 3;4 6.6725E-69 7 74460 20150910_Q1_SA_NiHu_Masterprac_group15_C 131.06 70.898 56679000 8030100 8736400 2765900 6898200 14836000 15413000 8233 982 8122 36442;36443;36444;36445;36446;36447;36448;36449;36450;36451 24053;24054;24055;24056;24057;24058;24059 24055 7 TVVSGSCAAHSLLITTEGK Unmodified 1929.983 0.98297631 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 3 2 131.53 122.07 2;3 0 12 82563 20150910_Q1_SA_NiHu_Masterprac_group13_C 223.86 192.82 1409100000 682770000 228220000 150820000 216780000 21992000 108490000 8234 1575 8123 36452;36453;36454;36455;36456;36457;36458;36459;36460;36461;36462;36463;36464;36465 24060;24061;24062;24063;24064;24065;24066;24067;24068;24069;24070;24071 24063 11 TVVTPLDMNRFQSK Unmodified 1634.845 0.84502627 1351 Q92547 TOPBP1 DNA topoisomerase 2-binding protein 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 132.07 122.62 2;3 1.0915E-69 10 83274 20150910_Q1_SA_NiHu_Masterprac_group13_C 133.98 98.939 168400000 51997000 22076000 58990000 13451000 13926000 7961600 8235 1351 8124 36466;36467;36468;36469;36470;36471;36472;36473;36474 24072;24073;24074;24075;24076;24077;24078;24079;24080;24081 24074 9 TVWEISQK Unmodified 989.5182 0.51819605 870 P23921;H0YFI0;E9PD78;E9PL69;F5H861 RRM1 Ribonucleoside-diphosphate reductase large subunit;Ribonucleoside-diphosphate reductase yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 104.06 98.466 2 0.021668 1 65396 20150910_Q1_SA_NiHu_Masterprac_group10_B 78.516 24.765 23070000 0 3591400 2085500 947860 0 16445000 8236 870 8125 36475;36476;36477;36478 24082 24082 1 TVYFAEEVQCEGNSFHK Unmodified 2043.8996 0.89964061 859 P21291;B3KVC9;E9PS42 CSRP1 Cysteine and glycine-rich protein 1 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching 2 2 2 132.31 122.49 2;3 1.3087E-131 6 78545 20150910_Q1_SA_NiHu_Masterprac_group10_C 145.94 131.66 210650000 150990000 0 0 43634000 16027000 0 8237 859 8126 36479;36480;36481;36482;36483;36484 24083;24084;24085;24086;24087;24088 24087 6 TVYHAEEVQCDGR Unmodified 1562.6784 0.67835487 1152 Q16527;F8VW96;F8VQR7 CSRP2 Cysteine and glycine-rich protein 2 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1 2 60.598 55.008 2;3 1.9259E-05 5 38861 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.463 90.333 26343000 698210 5422900 3882600 388260 4673000 11278000 8238 1152 8127 36485;36486;36487;36488;36489;36490;36491;36492 24089;24090;24091;24092;24093 24090 5 TVYPASYR Unmodified 955.47633 0.47633123 1485 Q9H211 CDT1 DNA replication factor Cdt1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 76.922 67.822 2 0.025361 1 47290 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.213 61.759 2166800 0 161850 343360 0 233700 1427900 8239 1485 8128 36493;36494;36495;36496 24094 24094 1 TWGRLSTQSNSNNIEPARTAGGSGLAR Unmodified 2800.3965 0.39646479 1122 Q14CA3;Q14669;Q14CF1 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 116.47 107.25 4 3.0262E-06 4 75684 20150910_Q1_SA_NiHu_Masterprac_group15_C 58.758 39.436 10234000 1052000 1722600 2798200 1357500 1615500 1688600 8240 1122 8129 36497;36498;36499;36500;36501;36502 24095;24096;24097;24098 24097 4 TWIPEVHDQK Unmodified 1251.6248 0.62478638 588 G3V529;Q9GZR7;F5H4J5 DDX24 ATP-dependent RNA helicase DDX24 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 3 2 109.12 99.609 2;3 2.5444E-09 10 73161 20150910_Q1_SA_NiHu_Masterprac_group13_C 117.01 72.15 55408000 2835100 4827700 7274200 5818900 13899000 20753000 8241 588 8130 36503;36504;36505;36506;36507;36508;36509;36510;36511;36512;36513;36514;36515;36516;36517 24099;24100;24101;24102;24103;24104;24105;24106;24107;24108 24100 10 TWNDPSVQQDIK Unmodified 1429.6838 0.68375782 823 P11021;B4DEF7 HSPA5 78 kDa glucose-regulated protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 106.18 104.4 2 0.020575 1 71438 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.726 27.472 2403200 0 0 0 342690 0 2060600 8242 823 8131 36518;36519 24109 24109 1 TWNHFSDNEAERVK Unmodified 1731.7965 0.79649617 1426 Q99543 DNAJC2 DnaJ homolog subfamily C member 2 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 90.431 82.719 4 0.0084677 1 61679 20150910_Q1_SA_NiHu_Masterprac_group15_C 52.5 22.863 6911700 291970 1252000 732210 817200 1441100 2377200 8243 1426 8132 36520;36521;36522;36523;36524;36525 24110 24110 1 TWTVVDAK Unmodified 918.48108 0.48108226 830 P13010 XRCC5 X-ray repair cross-complementing protein 5 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 100.6 94.118 2 0.019325 1 63177 20150910_Q1_SA_NiHu_Masterprac_group13_B 80.438 29.372 10667000 2104700 1121200 1688800 2679400 0 3073100 8244 830 8133 36526;36527;36528;36529;36530 24111 24111 1 TYADYESVNECMEGVCK Unmodified 2053.8067 0.80672779 581 G3V279;P84090 ERH Enhancer of rudimentary homolog yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 131.11 121.61 2 0 8 85948 20150910_Q1_SA_NiHu_Masterprac_group15_B 210.67 210.67 171000000 32034000 33682000 34039000 26878000 6009000 38354000 8245 581 8134 36531;36532;36533;36534;36535;36536 24112;24113;24114;24115;24116;24117;24118;24119 24116 8 TYDPSGDSTLPTCSK Unmodified 1627.7036 0.70356657 1640 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 92.116 84.596 2 0.00060503 4 64239 20150910_Q1_SA_NiHu_Masterprac_group13_C 81.992 76.097 51235000 0 6677800 6880200 6162800 19330000 12184000 8246 1640 8135 36537;36538;36539;36540;36541 24120;24121;24122;24123 24121 4 TYDPSGDSTLPTCSKK Unmodified 1755.7985 0.79852959 1640 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 78.493 72.668 3 0.00068095 4 50130 20150910_Q1_SA_NiHu_Masterprac_group13_B 69.485 69.485 12703000 2686200 2447800 948520 2696000 0 3924000 8247 1640 8136 36542;36543;36544;36545;36546 24124;24125;24126;24127 24124 4 TYGADLASVDFQHASEDARK Unmodified 2180.0134 0.013424818 166 B4E3A8;P30740 SERPINB1 Leukocyte elastase inhibitor yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 2 2 129.43 129.12 3;4 0.00031763 2 82430 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.708 43.085 46029000 0 42005000 0 4023700 0 0 8248 166 8137 36547;36548;36549;36550 24128;24129 24129 2 TYGGCEGPDAMYVK Unmodified 1546.6432 0.64321492 340 E5RHG8;E5RJ89;Q15369 TCEB1 Transcription elongation factor B polypeptide 1 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 110.55 100.49 2 7.7517E-31 6 68395 20150910_Q1_SA_NiHu_Masterprac_group15_B 118.73 111.91 21970000 2612900 3310400 3208900 1506400 1702800 9628500 8249 340 8138 36551;36552;36553;36554;36555;36556;36557 24130;24131;24132;24133;24134;24135 24132 5 TYHEVVDEIYFK Unmodified 1541.7402 0.74021007 1203 Q5VTL8;Q5VTL8-2 PRPF38B Pre-mRNA-splicing factor 38B yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 132.52 125.23 2;3 3.6296E-76 6 85160 20150910_Q1_SA_NiHu_Masterprac_group10_B 138.63 103.88 44879000 0 17651000 8163600 15121000 3943400 0 8250 1203 8139 36558;36559;36560;36561;36562;36563 24136;24137;24138;24139;24140;24141 24141 6 TYIQTELPFKAK Unmodified 1437.7868 0.78676633 212 B7ZM82;B3KVH1;O95785;O95785-2 WIZ Protein Wiz yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 1 2 3 132.36 121.97 2;3 4.2826E-223 8 84635 20150910_Q1_SA_NiHu_Masterprac_group13_B 182.41 146.41 312230000 100310000 44723000 22974000 45471000 98749000 0 8251 212 8140 36564;36565;36566;36567;36568;36569;36570;36571;36572;36573 24142;24143;24144;24145;24146;24147;24148;24149 24143 8 TYKQPHLQTK Unmodified 1242.6721 0.67207093 1463;1464 Q9BXS6-2;Q9BXS6-3;Q9BXS6;E7ERR5;Q9BXS6-5;E9PB35;Q9BXS6-4 NUSAP1 Nucleolar and spindle-associated protein 1 no no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 44.415 37.872 3 0.010439 1 30719 20150910_Q1_SA_NiHu_Masterprac_group13_C 73.841 54.214 1413300 0 474770 938540 0 0 0 8252 1463;1464 8141 36574;36575 24150 24150 1 TYNEPGSQVFK Unmodified 1268.6037 0.60371659 1260 Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-3;Q86U86-9;Q86U86-2;Q86U86-8;Q86U86;E7EVG2;H0Y5B5;Q86U86-6 PBRM1 Protein polybromo-1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 98.509 93.529 2 0.0050529 2 62752 20150910_Q1_SA_NiHu_Masterprac_group10_B 73.951 19.301 6793100 1640600 2792100 0 0 0 2360500 8253 1260 8142 36576;36577;36578 24151;24152 24152 2 TYNEPGSQVFKDANSIKK Unmodified 2025.0167 0.016719282 1260 Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-3;Q86U86-9;Q86U86-2;Q86U86-8;Q86U86;E7EVG2;H0Y5B5;Q86U86-6 PBRM1 Protein polybromo-1 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 114.78 105.65 4 0.0014358 3 70876 20150910_Q1_SA_NiHu_Masterprac_group10_C 58.164 47.154 5663600 1176300 700620 993480 912310 890150 990740 8254 1260 8143 36579;36580;36581;36582;36583;36584 24153;24154;24155 24155 3 TYQVTPMTPR Unmodified 1192.591 0.59104341 42 A8MTM6;Q15398;Q15398-1 DLGAP5 Disks large-associated protein 5 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 102.3 92.561 2 0.030524 1 62227 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.149 36.371 20970000 2393700 2647800 3518800 0 3030500 9379300 8255 42 8144 36585;36586;36587;36588;36589 24156 24156 1 TYSLSSSFSSSSSTRK Unmodified 1710.8061 0.8060578 732 O60563 CCNT1 Cyclin-T1 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 1 2 1 1 98.752 90.367 3 0.00038212 4 61539 20150910_Q1_SA_NiHu_Masterprac_group10_C 70.47 56.605 24080000 4839200 7698500 7196100 3895400 0 451270 8256 732 8145 36590;36591;36592;36593;36594;36595;36596 24157;24158;24159;24160 24160 4 TYSVVPMTSR Unmodified 1139.5645 0.56449431 1012 P78527 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 109.86 101.42 2 0.0098548 1 69153 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.841 56.169 9456100 155390 0 0 572100 761190 7967400 8257 1012 8146 36597;36598;36599;36600 24161 24161 1 TYTIANQFPLNK Unmodified 1408.7351 0.73506511 1543 Q9NSD9;F5H6Y1 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.98 132.38 2 9.5433E-05 1 85990 20150910_Q1_SA_NiHu_Masterprac_group10_B 98.754 67.276 14406000 0 14406000 0 0 0 0 8258 1543 8147 36601 24162 24162 1 TYTWNTKEEAK Unmodified 1369.6514 0.65139506 438 E9PHJ7;O75400-2;O75400-3;F8W9L2;O75400;F5H578 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 69.047 64.096 3 0.02964 1 44893 20150910_Q1_SA_NiHu_Masterprac_group10_B 51.727 34.705 3231500 0 763390 0 385010 715090 1368000 8259 438 8148 36602;36603;36604;36605 24163 24163 1 TYVTQTLLK Unmodified 1065.607 0.60701105 724 O43913;O43913-2;G3V0H0 ORC5 Origin recognition complex subunit 5 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 120.27 117.89 2 0.0071717 1 80202 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.029 53.851 5953900 0 0 0 738570 0 5215300 8260 724 8149 36606;36607 24164 24164 1 TYVVTGNMGSNDK Unmodified 1384.6293 0.62927941 1033 Q02413 DSG1 Desmoglein-1 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 85.425 76.853 2 0.0090312 1 59666 20150910_Q1_SA_NiHu_Masterprac_group13_C 56.569 35.174 5057000 0 0 2266000 1151800 754180 885020 8261 1033 8150 36608;36609;36610;36611 24165 24165 1 VAAAASCLSQK Unmodified 1104.5597 0.55974328 761 O95067 CCNB2 G2/mitotic-specific cyclin-B2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 59.053 52.46 2 0.0044026 6 42603 20150910_Q1_SA_NiHu_Masterprac_group15_C 77.062 51.936 11569000 1969300 1119800 1352600 1246000 3249500 2632000 8262 761 8151 36612;36613;36614;36615;36616;36617 24166;24167;24168;24169;24170;24171 24169 6 VAAAMPVR Unmodified 813.45309 0.45309337 583 Q13573;G3V3A4;E9PGQ7 SNW1 SNW domain-containing protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 70.653 65.991 2 0.020937 1 45929 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.116 36.116 1858000 143580 0 0 0 0 1714400 8263 583 8152 36618;36619 24172 24172 1 VAAAMPVRAADK Unmodified 1198.6492 0.64922699 583 Q13573;G3V3A4;E9PGQ7 SNW1 SNW domain-containing protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 68.949 61.611 2;3 0.0018213 10 43220 20150910_Q1_SA_NiHu_Masterprac_group10_C 77.674 58.412 44752000 5523700 5830800 12246000 3932100 6362200 10857000 8264 583 8153 36620;36621;36622;36623;36624;36625;36626;36627;36628;36629;36630;36631;36632 24173;24174;24175;24176;24177;24178;24179;24180;24181;24182 24181 10 VAADLQLSTPQK Unmodified 1269.6929 0.69286595 1492 Q9H582-2;Q9H582;F5H7T9 ZNF644 Zinc finger protein 644 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 107.14 99.183 2 1.0386E-18 4 72830 20150910_Q1_SA_NiHu_Masterprac_group13_C 117.95 80.804 15400000 0 2982800 2045700 776120 1903300 7691800 8265 1492 8154 36633;36634;36635;36636;36637 24183;24184;24185;24186 24183 4 VAAERAESCGSGNSTGYQIR Unmodified 2111.9654 0.96542877 502 Q9H2U1-3;Q9H2U1-2;F5GZS0;Q9H2U1;E7EWK3 DHX36 Probable ATP-dependent RNA helicase DHX36 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 69.869 68.714 3 0.035362 1 47808 20150910_Q1_SA_NiHu_Masterprac_group15_B 33.764 12.815 783870 0 0 0 0 0 783870 8266 502 8155 36638 24187 24187 1 VAAETQSPSLFGSTK Unmodified 1521.7675 0.76748745 1603 Q9UKX7-2;Q9UKX7 NUP50 Nuclear pore complex protein Nup50 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 117.94 109.22 2 0.004001 4 71792 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.335 55.335 6359400 1016200 1983400 793850 1294400 1271500 0 8267 1603 8156 36639;36640;36641;36642;36643;36644 24188;24189;24190;24191 24191 4 VAAGLQIK Unmodified 798.49634 0.49633839 1119 Q14974 KPNB1 Importin subunit beta-1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 85.037 75.964 2 0.008455 1 52621 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.375 39.017 2407200 0 0 1045200 0 0 1362000 8268 1119 8157 36645;36646 24192 24192 1 VAAQNLIQNTNIDNGQK Unmodified 1839.9439 0.94388869 88 B4DGM4;Q9NX70 MED29 Mediator of RNA polymerase II transcription subunit 29 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 124.36 114.23 2 0.0003962 1 75772 20150910_Q1_SA_NiHu_Masterprac_group10_C 71.781 45.009 1603400 1016400 0 0 0 0 587090 8269 88 8158 36647;36648 24193 24193 1 VAASHHPPDRPPDPFSTL Unmodified 1939.9541 0.95405945 1062 Q12857-2 NFIA Nuclear factor 1 A-type yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 1 131.98 121.41 3;4 1.0244E-73 10 83917 20150910_Q1_SA_NiHu_Masterprac_group10_B 127.07 116.06 302400000 63203000 70959000 78999000 23704000 17871000 47667000 8270 1062 8159 36649;36650;36651;36652;36653;36654;36655;36656;36657;36658;36659;36660 24194;24195;24196;24197;24198;24199;24200;24201;24202;24203 24201 10 VAASPKSPTAALNESLVECPK Unmodified 2168.1147 0.11471877 1174 Q53EZ4 CEP55 Centrosomal protein of 55 kDa yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 130.15 129.85 3 2.2159E-23 1 82991 20150910_Q1_SA_NiHu_Masterprac_group10_B 100.41 87.699 10465000 0 9411700 0 1053300 0 0 8271 1174 8160 36661;36662 24204 24204 1 VAATSVITIVKSK Unmodified 1315.8075 0.80750177 707 O15525 MAFG Transcription factor MafG yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 131.4 115.71 3 0.0045118 1 77000 20150910_Q1_SA_NiHu_Masterprac_group10_C 62.162 45.389 1298800 1298800 0 0 0 0 0 8272 707 8161 36663 24205 24205 1 VACIGAWHPAR Unmodified 1236.6186 0.61859557 905 P39023;G5E9G0;B5MCW2;H7C422;Q92901 RPL3;RPL3L 60S ribosomal protein L3;60S ribosomal protein L3-like yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 3 1 103.38 93.979 2;3 0.0015475 3 68438 20150910_Q1_SA_NiHu_Masterprac_group15_C 87.149 53.959 25483000 4672800 1353300 851440 5314400 5248700 8042400 8273 905 8162 36664;36665;36666;36667;36668;36669;36670;36671 24206;24207;24208 24208 3 VACIGAWHPARVAFSVAR Unmodified 1967.0312 0.031204329 905 P39023;G5E9G0;B5MCW2;H7C422 RPL3 60S ribosomal protein L3 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 132.78 132.78 4 0.0018377 1 85820 20150910_Q1_SA_NiHu_Masterprac_group13_B 63.754 45.796 14862000 0 0 0 14862000 0 0 8274 905 8163 36672 24209 24209 1 VADGFKVVAR Unmodified 1060.6029 0.60292873 129 F8W720;B4DUT7;P49915 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 87.629 80.335 2 0.0044404 3 55394 20150910_Q1_SA_NiHu_Masterprac_group10_C 103.26 57.575 7851200 1340500 1730600 0 0 1035600 3744500 8275 129 8164 36673;36674;36675;36676 24210;24211;24212 24212 3 VADLTEQYNEQYGAVR Unmodified 1854.8748 0.87480607 1457 Q9BWF3;B0LM41 RBM4;RBM14 RNA-binding protein 4;RNA-binding protein 14 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 123.24 120.56 2 0.0062233 1 81673 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.64 37.265 2003100 0 786460 0 0 0 1216700 8276 1457 8165 36677;36678 24213 24213 1 VADNAQQQYVR Unmodified 1290.6317 0.63166267 1336 Q8TDD1;Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 62.47 54.578 2 8.629E-30 7 39174 20150910_Q1_SA_NiHu_Masterprac_group10_B 127.83 99.123 10398000 550130 986210 3970100 595210 2034300 2261800 8277 1336 8166 36679;36680;36681;36682;36683;36684;36685 24214;24215;24216;24217;24218;24219;24220 24218 7 VADWTGATYQDK Unmodified 1353.6201 0.62009493 50 B0QYA5;B4DVY1;A8MWD3;O15371;B0QYA8;B0QYA6;B0QYA7 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 100.46 92.345 2 0.00065502 3 68882 20150910_Q1_SA_NiHu_Masterprac_group13_C 93.766 54.586 12838000 817000 1739300 2248100 1736600 2388500 3908200 8278 50 8167 36686;36687;36688;36689;36690;36691 24221;24222;24223 24222 3 VAEDEAEAAAAAK Unmodified 1244.5885 0.58846046 163 F5H867;F5H0E2;H0YFS2;B4E2Z3;P08195-2;P08195-3;F5GZS6;P08195;P08195-4 SLC3A2 4F2 cell-surface antigen heavy chain yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 67.493 60.349 2 5.9307E-24 6 42257 20150910_Q1_SA_NiHu_Masterprac_group15_B 114.87 93.836 10244000 428730 1234300 827460 751850 2265500 4735900 8279 163 8168 36692;36693;36694;36695;36696;36697 24224;24225;24226;24227;24228;24229 24225 5 VAEDFVSPEHVK Unmodified 1355.6721 0.67213051 516 Q9Y4C1;F5H4E6;F5H070;Q7LBC6-3;F5H275;Q7LBC6-2;H0YH24;Q7LBC6 KDM3A;KDM3B Lysine-specific demethylase 3A;Lysine-specific demethylase 3B yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 2 92.704 90.548 3 0.01646 2 61962 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.089 51.994 0 0 0 0 0 0 0 8280 516 8169 36698;36699 24230;24231 24230 2 VAEEAGEKGPTPPLPSAPLAPEK Unmodified 2284.1951 0.19507758 1117 Q14865-2;Q14865 ARID5B AT-rich interactive domain-containing protein 5B yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 131.53 121.12 3 3.3177E-14 3 82612 20150910_Q1_SA_NiHu_Masterprac_group13_C 84.689 72.15 21411000 3058900 8040700 6494900 3101300 715140 0 8281 1117 8170 36700;36701;36702;36703;36704 24232;24233;24234 24232 3 VAEEEETSVKK Unmodified 1247.6245 0.62451161 1640 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 37.268 27.968 3 0.0093167 1 22565 20150910_Q1_SA_NiHu_Masterprac_group13_C 57.149 28.441 1445600 0 0 1197700 0 247890 0 8282 1640 8171 36705;36706 24235 24235 1 VAEHHVATLSGHSQEVCGLR Unmodified 2186.0651 0.065083233 157 B4E1H5;Q12834 CDC20 Cell division cycle protein 20 homolog yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 84.628 77.248 4 2.6573E-27 7 53064 20150910_Q1_SA_NiHu_Masterprac_group15_B 105.5 90.294 12980000 0 4429400 1193900 1053300 1100000 5203100 8283 157 8172 36707;36708;36709;36710;36711 24236;24237;24238;24239;24240;24241;24242 24239 7 VAEPGAEATSSTGEESGSEHPPAVPMHNK Unmodified 2902.3039 0.30392911 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 1 2 2 2 94.916 87.775 3;4 3.0075E-12 6 60751 20150910_Q1_SA_NiHu_Masterprac_group10_C 59.55 56.433 207020000 43875000 16136000 28225000 26417000 58427000 33937000 8284 1111 8173 36712;36713;36714;36715;36716;36717;36718;36719;36720;36721;36722 24243;24244;24245;24246;24247;24248 24248 3 VAEPGAEATSSTGEESGSEHPPAVPMHNK Oxidation (M) 2918.2988 0.29884374 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 1 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 2 1 1 2 1 86.049 78.009 4 1.7837E-07 4 54637 20150910_Q1_SA_NiHu_Masterprac_group10_C 55.588 50.775 24566000 4139300 2229900 2782500 961350 12359000 2093700 8285 1111 8173 36723;36724;36725;36726;36727;36728;36729;36730 24249;24250;24251;24252 24251 137 4 VAEQERTAQQLR Unmodified 1427.7481 0.74808942 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;H0YH75 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 53.13 45.084 3 0.0030942 2 33693 20150910_Q1_SA_NiHu_Masterprac_group10_C 72.152 48.218 7560500 1556000 0 2077700 1247200 2679600 0 8286 1121 8174 36731;36732;36733;36734 24253;24254 24254 2 VAEQERTAQQLRAEK Unmodified 1755.9228 0.92275932 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;H0YH75 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 56.058 49.75 3;4 0.0077039 4 40997 20150910_Q1_SA_NiHu_Masterprac_group13_C 48.214 33.65 33526000 6842100 4391700 7893500 7174600 3769000 3454900 8287 1121 8175 36735;36736;36737;36738;36739;36740 24255;24256;24257;24258 24255 4 VAERPQHMLMR Unmodified 1366.6962 0.69619396 870 P23921;H0YFI0;E9PD78 RRM1 Ribonucleoside-diphosphate reductase large subunit;Ribonucleoside-diphosphate reductase yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 69.915 63.197 3 0.019492 1 44207 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.404 56.404 2787400 0 108980 217070 0 0 2461400 8288 870 8176 36741;36742;36743 24259 24259 1 VAESAQSPAAAHTTDTAGYNAMEESVSR Unmodified 2850.2726 0.27262898 426 E9PFZ0;P38398-4;P38398-2;P38398;E9PFC7;E7EP70;B7ZA85;E7EUM2;P38398-6;E7ETR2;P38398-3;H0Y8B8;G3XAC3;P38398-5 BRCA1 Breast cancer type 1 susceptibility protein yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 125.46 107.89 3 0.00034844 3 78069 20150910_Q1_SA_NiHu_Masterprac_group13_C 41.047 32.201 1976800 0 0 1147500 0 829290 0 8289 426 8177 36744;36745 24260;24261;24262 24261 3 VAEVAPEERENVAVAK Unmodified 1709.8948 0.89481323 249 Q6IQ49-2;C9JIQ2;Q6IQ49;Q6IQ49-3 SDE2 Protein SDE2 homolog yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 81.564 79.582 3 0.036213 1 54814 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.654 17.977 1773500 0 530300 0 0 0 1243200 8290 249 8178 36746;36747 24263 24263 1 VAEVQQVLRPAEK Unmodified 1465.8253 0.8252771 1091 Q13751 LAMB3 Laminin subunit beta-3 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 97.216 94.658 3 0.0059126 1 64601 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.157 40.958 1750000 0 0 0 0 0 1750000 8291 1091 8179 36748 24264 24264 1 VAFSEITSPSK Unmodified 1164.6027 0.60265396 1080 Q13415 ORC1 Origin recognition complex subunit 1 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 1 118.75 106.75 2 3.7715E-05 7 77083 20150910_Q1_SA_NiHu_Masterprac_group13_C 102.05 59.33 90819000 12887000 17778000 18893000 0 16520000 24741000 8292 1080 8180 36749;36750;36751;36752;36753;36754 24265;24266;24267;24268;24269;24270;24271 24266 6 VAGGAAPSKPASAK Unmodified 1210.667 0.66698555 1120 Q14978;Q14978-3;Q14978-2 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 1 29.66 24.774 2;3 0.0026222 4 17113 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.181 30.123 5480100 818980 2268200 1176800 0 875470 340630 8293 1120 8181 36755;36756;36757;36758;36759;36760;36761;36762;36763 24272;24273;24274;24275 24274 4 VAGHSLGYGFVNYVTAK Unmodified 1781.9101 0.91006937 1146 Q15717 ELAVL1 ELAV-like protein 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 133.31 132.71 3 3.004E-15 1 86319 20150910_Q1_SA_NiHu_Masterprac_group10_B 101.08 74.528 44148000 0 44148000 0 0 0 0 8294 1146 8182 36764 24276 24276 1 VAGIESHSELQISR Unmodified 1524.7896 0.78961988 1121 Q14980-2;Q14980 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 106.12 97.362 3 3.2633E-20 3 66369 20150910_Q1_SA_NiHu_Masterprac_group15_B 110.15 90.043 12669000 2486800 5067000 1184400 0 0 3930400 8295 1121 8183 36765;36766;36767;36768 24277;24278;24279 24278 3 VAGQDGSVVQFKIK Unmodified 1474.8144 0.81437807 43 P61956-2;Q6EEV6;P61956;H7BZT4;P55854;A8MUA9;B4DUW4;A8MU27 SUMO2;SUMO4;SUMO3 Small ubiquitin-related modifier 2;Small ubiquitin-related modifier 4;Small ubiquitin-related modifier 3 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 118.59 113.28 3 0.0056841 2 74939 20150910_Q1_SA_NiHu_Masterprac_group10_C 55.724 45.371 5041500 1449000 974810 0 621570 0 1996200 8296 43 8184 36769;36770;36771;36772 24280;24281 24281 2 VAHEINHGIGQAGK Unmodified 1429.7426 0.74261011 409 E9PBV3;Q6UWP8 SBSN Suprabasin yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 45.281 39.742 3 0.0025534 1 32249 20150910_Q1_SA_NiHu_Masterprac_group13_C 60.937 40.197 3473500 0 0 2997000 476440 0 0 8297 409 8185 36773;36774 24282 24282 1 VAIESAVQQK Unmodified 1071.5924 0.59242362 1215 Q68CP9-3;Q68CP9;F8VWP4;Q68CP9-2;E7ENG3;F8W108;F8WCU9 ARID2 AT-rich interactive domain-containing protein 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 78.339 71.42 2 0.016158 1 49603 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.92 31.475 6095500 0 1334700 1189900 0 0 3570900 8298 1215 8186 36775;36776;36777 24283 24283 1 VAIHYINPPNPAKDNFTFK Unmodified 2185.132 0.13202381 463 P78406;E9PQ57 RAE1 mRNA export factor yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 132.57 132.57 4 0.0003524 1 85590 20150910_Q1_SA_NiHu_Masterprac_group13_B 69.069 52.455 4800600 0 0 0 4800600 0 0 8299 463 8187 36778 24284 24284 1 VALSSETEVALAR Unmodified 1344.7249 0.72489436 388 E7EVA0;P27816-6;P27816;P27816-2 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 127.83 122.51 2 5.2485E-156 3 77609 20150910_Q1_SA_NiHu_Masterprac_group10_C 166.24 113.51 46322000 32688000 2696900 0 1789600 0 9147000 8300 388 8188 36779;36780;36781;36782 24285;24286;24287 24287 3 VAMILDPQQK Unmodified 1141.6165 0.61652988 1195 Q5T7W0-2;Q5T7W0 ZNF618 Zinc finger protein 618 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 114.11 113.11 2 0.029598 1 73390 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.532 57.532 1299600 0 1299600 0 0 0 0 8301 1195 8189 36783 24288 24288 1 VANPSSDADGQSLK Unmodified 1387.6579 0.657937 351 F5H7K2;Q8IWI9;E7ENI0 MGA MAX gene-associated protein yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 62.117 55.883 2 0.013114 1 44953 20150910_Q1_SA_NiHu_Masterprac_group15_C 48.608 24.932 1714000 0 286000 0 0 896260 531750 8302 351 8190 36784;36785;36786 24289 24289 1 VANTSSFHTTPNTSLGMVQATPSK Unmodified 2475.2064 0.20638732 410 F5GZ80;E9PC26;F5GXI5;O43683 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 129.39 124.43 3 6.4155E-09 2 84202 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.877 56.378 2663600 0 0 0 0 0 2663600 8303 410 8191 36787 24290;24291 24291 2 VAPAPAAADAEVEQTDAESK Unmodified 1968.9276 0.9276295 721 O43823 AKAP8 A-kinase anchor protein 8 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 101.49 93.791 2 0.0047866 3 64080 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.844 34.983 12159000 0 2604300 2259000 1218400 2970500 3106800 8304 721 8192 36788;36789;36790;36791;36792 24292;24293;24294 24293 3 VAPAPAVVK Unmodified 850.52764 0.52763852 991 P62424;Q5T8U3 RPL7A 60S ribosomal protein L7a yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 68.334 61.124 2 0.0063238 5 44248 20150910_Q1_SA_NiHu_Masterprac_group10_C 92.47 59.658 12600000 2441600 1988900 2004100 1088900 2904800 2171800 8305 991 8193 36793;36794;36795;36796;36797;36798 24295;24296;24297;24298;24299 24299 5 VAPEEHPVLLTEAPLNPK Unmodified 1953.0571 0.057127534 164 F5H0N0;B4E335;P63261;P60709;I3L3I4;G5E9R0;I3L3R2;E7EVS6;I3L3I0;I3L1U9;B4DW52;I3L4N8;F5GYT4 ACTG1;ACTB Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 132.9 121.48 3 3.0362E-32 6 83893 20150910_Q1_SA_NiHu_Masterprac_group13_C 107.98 18.619 385820000 44976000 126800000 83556000 0 42306000 88182000 8306 164 8194 36799;36800;36801;36802;36803;36804 24300;24301;24302;24303;24304;24305 24301 6 VAPEEHPVLLTEAPLNPKANR Unmodified 2294.2383 0.2382798 164 F5H0N0;B4E335;P63261;P60709;I3L3I4;G5E9R0;I3L3R2;E7EVS6;I3L3I0;I3L1U9;B4DW52;I3L4N8;F5GYT4 ACTG1;ACTB Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 131.45 123.3 4 0.0011826 2 83642 20150910_Q1_SA_NiHu_Masterprac_group10_B 52.731 40.662 16161000 3233000 12928000 0 0 0 0 8307 164 8195 36805;36806 24306;24307 24306 0 VAPERLFGSAANVVSAK Unmodified 1714.9366 0.93661847 778 O96006 ZBED1 Zinc finger BED domain-containing protein 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.32 131.72 3 0.0036707 1 85232 20150910_Q1_SA_NiHu_Masterprac_group10_B 50.188 24.872 21045000 0 21045000 0 0 0 0 8308 778 8196 36807 24308 24308 1 VAPVINNGSPTILGK Unmodified 1478.8457 0.8456782 1078 Q13330;Q13330-3;E7ESY4;E7EN71;H0Y4T7;F8W9Y9 MTA1 Metastasis-associated protein MTA1 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 131.91 126.02 2 4.3587E-56 4 84259 20150910_Q1_SA_NiHu_Masterprac_group10_B 128.95 105.59 142360000 0 49147000 42467000 2526000 0 48224000 8309 1078 8197 36808;36809;36810;36811 24309;24310;24311;24312 24312 3 VAPVINNGSPTILGKR Unmodified 1634.9468 0.94678922 1078 Q13330;Q13330-3;E7ESY4;E7EN71;H0Y4T7;F8W9Y9 MTA1 Metastasis-associated protein MTA1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 118.93 116.19 3 0.001007 1 74973 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.709 51.367 2422100 0 1677700 0 0 0 744350 8310 1078 8198 36812;36813 24313 24313 1 VAPVRVGTQAPR Unmodified 1249.7255 0.72550348 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 68.452 61.119 3 0.0018369 7 44270 20150910_Q1_SA_NiHu_Masterprac_group10_C 79.659 61.128 12384000 3499000 1831200 1391000 1887900 2428500 1346100 8311 383;1082 8199 36814;36815;36816;36817;36818;36819;36820 24314;24315;24316;24317;24318;24319;24320 24320 7 VAPVRVGTQAPRK Unmodified 1377.8205 0.8204665 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 53.258 47.134 3 0.0049159 4 34673 20150910_Q1_SA_NiHu_Masterprac_group10_C 80.245 62.172 131860000 23426000 22456000 12910000 20586000 30429000 22053000 8312 383;1082 8200 36821;36822;36823;36824;36825;36826 24321;24322;24323;24324 24324 4 VAQENSSTFGLQTLQK Unmodified 1749.8897 0.88972785 1144 Q15652-2;Q15652-3;Q15652 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C yes no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 1 1 131.39 122.52 2 4.1419E-49 4 83171 20150910_Q1_SA_NiHu_Masterprac_group13_C 118.31 67.586 9890500 0 0 0 8300400 1590100 0 8313 1144 8201 36827;36828;36829;36830 24325;24326;24327;24328 24327 4 VAQGVSGAVQDKGSIHK Unmodified 1679.8955 0.89548193 610 H0Y4R1;P12268 IMPDH2 Inosine-5'-monophosphate dehydrogenase 2 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 58.979 55.095 3 0.0117 3 40913 20150910_Q1_SA_NiHu_Masterprac_group10_C 42.191 23.402 1168400 526900 0 0 641490 0 0 8314 610 8202 36831;36832;36833 24329;24330;24331 24331 3 VAQPKEVYRQQQQQQK Unmodified 1985.0443 0.044271436 699 O14979-3;O14979-2;O14979 HNRPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 49.682 42.261 3 0.0067219 1 30001 20150910_Q1_SA_NiHu_Masterprac_group10_B 60.364 46.799 2099200 0 1864100 0 0 235100 0 8315 699 8203 36834;36835 24332 24332 1 VAQRSPVDSGTILREPTTK Unmodified 2054.112 0.11201665 936 P49454 CENPF Centromere protein F yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 101.05 95.565 4 0.0015151 2 70995 20150910_Q1_SA_NiHu_Masterprac_group13_C 52.93 38.93 8978000 0 1609100 2658100 647360 0 4063500 8316 936 8204 36836;36837;36838;36839 24333;24334 24333 2 VAQRVLATQPGPGR Unmodified 1448.8212 0.82119478 414 Q5JTH9-2;E9PCK7;Q5JTH9;F5H456 RRP12 RRP12-like protein yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 70.615 63.287 3 0.0011276 3 45419 20150910_Q1_SA_NiHu_Masterprac_group10_C 75.89 61.099 9787400 1253600 782590 853270 775340 3462400 2660300 8317 414 8205 36840;36841;36842;36843;36844;36845 24335;24336;24337 24336 3 VAQYVVR Unmodified 833.47594 0.4759373 486;430 F5H2G1;F5GWX5;Q14839;Q14839-2;Q12873;E9PG89;Q12873-2 CHD4;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 no no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 67.444 58.952 2 0.011177 3 41804 20150910_Q1_SA_NiHu_Masterprac_group10_B 101.21 60.639 25409000 436130 8787400 4758700 0 855910 10571000 8318 486;430 8206 36846;36847;36848;36849;36850 24338;24339;24340 24340 3 VAQYVVREEDK Unmodified 1334.683 0.68302954 430 Q12873;E9PG89;Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 65.023 56.676 2 1.8707E-12 1 40061 20150910_Q1_SA_NiHu_Masterprac_group15_B 115.92 74.702 8933300 0 3373600 1161200 0 745280 3653300 8319 430 8207 36851;36852;36853;36854 24341 24341 1 VAQYVVREEEMGEEEEVER Unmodified 2309.0482 0.048155344 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 117.69 114.9 3 0.00051506 4 78338 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.105 56.728 7345400 0 2363300 0 0 0 4982100 8320 486 8208 36855;36856 24342;24343;24344;24345 24343 4 VARKAGHHQTAYNALLNAGESR Unmodified 2363.2207 0.22067267 1085 Q13535-2;Q13535-3;Q13535 ATR Serine/threonine-protein kinase ATR yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 133.38 117.69 4 0.036696 1 79172 20150910_Q1_SA_NiHu_Masterprac_group10_C 31.138 5.5189 27813000 27813000 0 0 0 0 0 8321 1085 8209 36857 24346 24346 1 VARPLPAEEPERAK Unmodified 1561.8576 0.85763986 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 61.765 55.222 3 0.0036088 2 39158 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.031 47.852 23249000 2251000 6948500 0 0 220200 13829000 8322 487 8210 36858;36859;36860;36861 24347;24348 24347 2 VARVEQTETPEMMEAR Unmodified 1875.8819 0.88188206 959 P52701;B4DF41;F5H2F9;F5H769;P52701-2 MSH6 DNA mismatch repair protein Msh6 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1 100.87 92.437 3 0.0012956 7 62046 20150910_Q1_SA_NiHu_Masterprac_group10_B 79.347 68.849 27775000 8280400 2861900 4522900 1496300 3081700 7531600 8323 959 8211 36862;36863;36864;36865;36866;36867;36868 24349;24350;24351;24352;24353;24354;24355 24354 7 VASIETGLAAAAAK Unmodified 1271.7085 0.70851601 377 E7ET14;H0Y589;Q9UPP1-4;H3BLZ7;H0Y3N9;Q9UPP1-3;Q9UPP1-2;Q9UPP1;O75151 PHF2;PHF8 Histone lysine demethylase PHF8;Lysine-specific demethylase PHF2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 128.07 123.11 2 0.004569 1 83287 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.425 19.708 2874000 0 0 0 0 0 2874000 8324 377 8212 36869 24356 24356 1 VASIQGRPQDTKPGVK Unmodified 1679.9319 0.93186744 607 H0Y3K4;Q96EV2 RBM33 RNA-binding protein 33 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 58.108 51.583 4 0.015008 2 42678 20150910_Q1_SA_NiHu_Masterprac_group13_C 41.542 23.58 9543600 917090 1797400 1556400 877500 1141000 3254300 8325 607 8213 36870;36871;36872;36873;36874;36875 24357;24358 24357 1 VASLRETYGDMADCCEK Unmodified 2003.8387 0.83869662 294 CON__P02769 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 4 4 4 107.32 98.812 2;3 1.7332E-07 14 66806 20150910_Q1_SA_NiHu_Masterprac_group10_B 89.502 81.012 734940000 90109000 172280000 121140000 97382000 40562000 213480000 + 8326 294 8214 36876;36877;36878;36879;36880;36881;36882;36883;36884;36885;36886;36887;36888;36889;36890;36891;36892;36893;36894;36895;36896;36897;36898 24359;24360;24361;24362;24363;24364;24365;24366;24367;24368;24369;24370;24371;24372 24371 14 VASLRETYGDMADCCEK Oxidation (M) 2019.8336 0.83361124 294 CON__P02769 yes yes 0 1 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 79.209 73.995 3 0.026938 1 51296 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.688 53.317 3928200 0 972090 867830 885300 0 1203000 + 8327 294 8214 36899;36900;36901;36902 24373 24373 25 1 VASSPVMVSNPATR Unmodified 1414.7238 0.7238485 18 A6NEM2;P51610-2;P51610 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1 104.23 94.446 2 8.5506E-13 6 64639 20150910_Q1_SA_NiHu_Masterprac_group15_B 103.83 84.193 64105000 5083500 9531200 7515800 8629500 12464000 20881000 8328 18 8215 36903;36904;36905;36906;36907;36908;36909;36910 24374;24375;24376;24377;24378;24379 24376 6 VASVAENKGLFEEAAK Unmodified 1661.8625 0.86245047 651 H3BVE2;Q8N1F7-2;Q8N1F7;H3BVG0 NUP93 Nuclear pore complex protein Nup93 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 115.27 106.13 3 0.0009023 4 75242 20150910_Q1_SA_NiHu_Masterprac_group15_C 73.834 57.594 9853700 851490 1193700 1760000 593550 2036900 3418100 8329 651 8216 36911;36912;36913;36914;36915;36916 24380;24381;24382;24383 24382 3 VASVDSAVAATTPTSMATVQKQK Unmodified 2290.1839 0.18386096 350 E7ENF1;G5EA44;Q96C57;F5H7W8;F5H8B7;H0YGK4;F6TFQ5;F5H3K2 C12orf43 Uncharacterized protein C12orf43 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 123.68 116.7 3 5.8537E-22 3 76173 20150910_Q1_SA_NiHu_Masterprac_group10_C 94.911 73.375 8443000 6191000 980360 0 0 0 1271700 8330 350 8217 36917;36918;36919 24384;24385;24386 24386 3 VASVSQNAIVSAAGNIAR Unmodified 1726.9326 0.93259572 100 E9PF10;O75694-2;B4DLT2;O75694 NUP155 Nuclear pore complex protein Nup155 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 133.1 132.5 2 3.2614E-210 2 86080 20150910_Q1_SA_NiHu_Masterprac_group10_B 164.53 128.5 71586000 0 71586000 0 0 0 0 8331 100 8218 36920 24387;24388 24388 2 VATVSLPR Unmodified 841.50215 0.50215205 284 CON__P00761 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 98.771 90.464 2 1.9704E-36 14 62048 20150910_Q1_SA_NiHu_Masterprac_group15_B 141.52 68.729 11008000000 2197600000 1330100000 1268500000 1793700000 2177700000 2240600000 + 8332 284 8219 36921;36922;36923;36924;36925;36926;36927 24389;24390;24391;24392;24393;24394;24395;24396;24397;24398;24399;24400;24401;24402 24392 14 VATVSLPRSCAAAGTECLISGWGNTK Unmodified 2705.3265 0.32651923 284 CON__P00761 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 133.37 115.52 3 4.8693E-05 1 82431 20150910_Q1_SA_NiHu_Masterprac_group15_C 61.091 44.185 18368000 0 0 0 0 18368000 0 + 8333 284 8220 36928 24403 24403 0 VAVEAKNPADLPK Unmodified 1350.7507 0.75071518 833 P13639;F5H370 EEF2 Elongation factor 2 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 91.273 82.324 3 0.0014499 3 56375 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.283 49.26 2510800 0 0 0 0 1073300 1437500 8334 833 8221 36929;36930 24404;24405;24406 24404 3 VAVEEVDEEGK Unmodified 1202.5667 0.56666238 783 P02545;P02545-3;Q6UYC3;P02545-2;D6RAQ3;E7EUI9;Q5TCI8 LMNA Prelamin-A/C;Lamin-A/C yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 72.701 65.356 2 4.3319E-05 4 52148 20150910_Q1_SA_NiHu_Masterprac_group13_C 101.3 71.521 7985000 762220 2377400 1115000 625130 950590 2154700 8335 783 8222 36931;36932;36933;36934;36935;36936 24407;24408;24409;24410 24407 4 VAVEYLDPSPEVQK Unmodified 1572.8035 0.80353861 719 O43684-2;O43684;B4DDM6 BUB3 Mitotic checkpoint protein BUB3 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 131.66 122.16 2 2.2731E-228 8 86478 20150910_Q1_SA_NiHu_Masterprac_group15_B 172.85 136.18 261820000 29854000 98690000 25603000 15057000 6216500 86397000 8336 719 8223 36937;36938;36939;36940;36941;36942 24411;24412;24413;24414;24415;24416;24417;24418 24413 8 VAVEYLDPSPEVQKK Unmodified 1700.8985 0.89850163 719 O43684-2;O43684;B4DDM6 BUB3 Mitotic checkpoint protein BUB3 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 2 2 2 119.8 111.65 2;3 7.4462E-125 8 80050 20150910_Q1_SA_NiHu_Masterprac_group13_C 149.69 131.37 106190000 17478000 10244000 26590000 12630000 3029600 36218000 8337 719 8224 36943;36944;36945;36946;36947;36948;36949;36950;36951;36952;36953 24419;24420;24421;24422;24423;24424;24425;24426 24420 7 VAVLGNVDSGK Unmodified 1057.5768 0.57677356 613 H0Y7A5;Q9BX10-2;Q9BX10-4;Q9BX10 GTPBP2 GTP-binding protein 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 94.673 85.523 2 0.030492 1 58544 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.286 12.719 2219600 0 0 0 0 908790 1310800 8338 613 8225 36954;36955 24427 24427 1 VAVTSSSSSSSSSSSIPSAEKVPTTK Unmodified 2497.2395 0.23952117 1238 Q6WCQ1-3;Q6WCQ1;Q6WCQ1-2 MPRIP Myosin phosphatase Rho-interacting protein yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 95.761 89.394 3 0.00010149 3 60627 20150910_Q1_SA_NiHu_Masterprac_group13_B 53.444 53.444 5225400 0 1701200 2330800 1193400 0 0 8339 1238 8226 36956;36957;36958 24428;24429;24430 24428 3 VAVVNPQPQQWSK Unmodified 1479.7834 0.78341229 278 Q70E73;C9K0J5 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 117.14 107.41 2 0.0012021 1 76020 20150910_Q1_SA_NiHu_Masterprac_group15_C 77.894 55.982 7197300 0 0 1478800 1278700 1827700 2612100 8340 278 8227 36959;36960;36961;36962 24431 24431 1 VAYAAQPALK Unmodified 1030.5811 0.58113065 1405 Q96L91-4;Q96L91-3;Q96L91-5;Q96L91-2;Q96L91 EP400 E1A-binding protein p400 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 87.281 79.636 2 0.016111 2 54744 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.962 41.341 8583900 461100 1513400 1159500 1131900 1904400 2413500 8341 1405 8228 36963;36964;36965;36966;36967;36968 24432;24433 24433 2 VCADLIR Unmodified 845.44292 0.44292261 979 P60866;P60866-2;E5RJX2 RPS20 40S ribosomal protein S20 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 88.749 81.054 2 0.010539 3 55587 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.467 40.894 34337000 6034600 2239000 1792000 3614600 13070000 7587000 8342 979 8229 36969;36970;36971;36972;36973;36974 24434;24435;24436 24434 3 VCADLIRGAKEK Unmodified 1358.734 0.73401926 979 P60866;P60866-2;E5RJX2 RPS20 40S ribosomal protein S20 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 2 2 1 1 70.187 61.395 2;3 0.010224 4 44043 20150910_Q1_SA_NiHu_Masterprac_group10_C 71.085 24.355 58812000 26544000 9573000 9021000 0 6371100 7302500 8343 979 8230 36975;36976;36977;36978;36979;36980;36981;36982 24437;24438;24439;24440 24440 4 VCCALLISESQK Unmodified 1406.6898 0.68977118 184 B7Z367;Q9UL40;D6RJ07;Q9UL40-2;B7Z6B6;B7Z6Q2 ZNF346 Zinc finger protein 346 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 122.94 114.81 2 1.8673E-26 6 81424 20150910_Q1_SA_NiHu_Masterprac_group13_C 120.03 76.354 79406000 19295000 5927400 26551000 9268900 8110600 10254000 8344 184 8231 36983;36984;36985;36986;36987;36988;36989 24441;24442;24443;24444;24445;24446 24442 6 VCEVCSAYLGLHDNDRR Unmodified 2062.9313 0.93129187 186 B7Z500;Q9Y383-2;Q9Y383;B7Z4Q3 LUC7L2;C7orf55 Putative RNA-binding protein Luc7-like 2;UPF0562 protein C7orf55 no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 110.45 103.93 4 0.0033539 1 71212 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.318 33.068 3239000 766470 717610 0 0 0 1754900 8345 186 8232 36990;36991;36992 24447 24447 1 VCGKPLPCGSLDFIHTCEK Unmodified 2217.0381 0.038065125 1066 Q12986;Q12986-2;F5GXD0;Q12986-3 NFX1 Transcriptional repressor NF-X1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 131.9 119.78 4 0.021572 2 82955 20150910_Q1_SA_NiHu_Masterprac_group13_C 46.925 30.613 23991000 0 13516000 9037700 0 1437000 0 8346 1066 8233 36993;36994;36995 24448;24449 24448 1 VCIELTGLHPK Unmodified 1265.6802 0.68019277 1237 Q6W2J9 BCOR BCL-6 corepressor yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 130.54 125.57 3 0.037654 1 85219 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.706 23.532 1767400 0 0 0 0 0 1767400 8347 1237 8234 36996 24450 24450 0 VCLLDVQPHTVK Unmodified 1407.7544 0.75442035 1190 Q5T2T1 MPP7 MAGUK p55 subfamily member 7 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 120.53 118.7 3 0.024649 2 80737 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.712 18.649 3704700 0 939460 0 1086700 0 1678500 8348 1190 8235 36997;36998;36999 24451;24452 24451 2 VCNRNEYLDGR Unmodified 1394.6361 0.63609612 295 CON__P06868 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 58.29 51.798 3 0.0054544 3 37185 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.531 43.954 12420000 1026000 2699600 1401500 1199600 1665900 4427300 + 8349 295 8236 37000;37001;37002;37003;37004;37005 24453;24454;24455 24454 3 VCVEFDGESWRK Unmodified 1510.6875 0.68746299 516 Q9Y4C1;F5H4E6;F8WE62;C9JC73;C9J7Q7 KDM3A Lysine-specific demethylase 3A yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 127.84 122.87 3 0.0013435 1 83219 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.951 52.892 1241500 0 0 0 0 0 1241500 8350 516 8237 37006 24456 24456 1 VCYYYDGDIGNYYYGQGHPMKPHRIR Oxidation (M) 3237.4549 0.45490764 1358 Q92769;H3BM24 HDAC2 Histone deacetylase 2 yes no 0 1 2 By matching By matching By matching By matching By matching By MS/MS 1 129.83 124.86 5 0.0010297 1 84613 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.848 40.544 7599100 0 0 0 0 0 7599100 8351 1358 8238 37007 24457 24457 152 1 VCYYYDGDVGNYYYGQGHPMKPHR Unmodified 2938.2592 0.25916795 1086 Q13547;Q5TEE2 HDAC1 Histone deacetylase 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.05 125.08 4 6.0098E-21 1 84818 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.557 83.26 27610000 0 0 0 0 0 27610000 8352 1086 8239 37008 24458 24458 1 VDCPGPGSGAEGSGPGSVVPGSSGVGTPRQFTR Unmodified 3112.4632 0.46322372 688 Q5TBP5;O00268 TAF4 Transcription initiation factor TFIID subunit 4 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 131.53 115.84 3 0.015926 1 77141 20150910_Q1_SA_NiHu_Masterprac_group10_C 23.951 16.522 4133700 4133700 0 0 0 0 0 8353 688 8240 37009 24459 24459 1 VDCPVCGVNIPESHINK Unmodified 1936.9135 0.91351654 1542 Q9NS91;F8WE49 RAD18 E3 ubiquitin-protein ligase RAD18 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 121.05 118.31 3 0.027685 1 80509 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.042 27.196 2027100 0 652910 0 0 0 1374200 8354 1542 8241 37010;37011 24460 24460 1 VDCQAYAQTCQK Unmodified 1470.6231 0.62314818 1287 Q8IXB1;Q8IXB1-2;F8W884 DNAJC10 DnaJ homolog subfamily C member 10 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 2 1 57.722 49.887 2;3 4.1056E-18 13 36507 20150910_Q1_SA_NiHu_Masterprac_group10_B 113.95 93.739 113770000 3805800 4541400 25566000 18603000 24535000 36723000 8355 1287 8242 37012;37013;37014;37015;37016;37017;37018;37019;37020;37021 24461;24462;24463;24464;24465;24466;24467;24468;24469;24470;24471;24472;24473 24472 13 VDEGAGDSAAVASGGAQTLALAGSPAPSGHPK Unmodified 2845.3842 0.38422834 376 E7ESW4;Q9NZT2-2;Q9NZT2 OGFR Opioid growth factor receptor yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.31 126.34 3 0.014574 1 86162 20150910_Q1_SA_NiHu_Masterprac_group15_B 25.214 11.982 3586900 0 0 0 0 0 3586900 8356 376 8243 37022 24474 24474 1 VDFIEEK Unmodified 878.43855 0.43854874 245 C9JG87;Q9NYK5;Q9NYK5-2 MRPL39 39S ribosomal protein L39, mitochondrial yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 100.49 88.478 2 0.025922 1 60834 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.833 43.964 1975300 0 0 570070 0 363590 1041700 8357 245 8244 37023;37024;37025 24475 24475 1 VDFMETENSSSVK Unmodified 1471.6501 0.65007443 965 P54132;F5H7R6;F5H3V6 BLM Bloom syndrome protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 108.4 102.31 2 0.0016884 1 69610 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.699 59.023 2377200 219070 505260 0 0 0 1652900 8358 965 8245 37026;37027;37028 24476 24476 1 VDFTEEEINNMK Unmodified 1467.6552 0.65515981 929 P46940;H0YKA5 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 131.54 123.28 2 0 4 83692 20150910_Q1_SA_NiHu_Masterprac_group10_B 227.81 203.46 73988000 0 15625000 14161000 6727300 2691900 34784000 8359 929 8246 37029;37030;37031;37032;37033 24477;24478;24479;24480 24480 4 VDHHVFISNRNK Unmodified 1464.7586 0.75859452 1118 Q14966-3;Q14966;Q14966-4;Q14966-5 ZNF638 Zinc finger protein 638 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 44.286 39.505 3 0.026188 2 32104 20150910_Q1_SA_NiHu_Masterprac_group13_C 49.448 33.507 743040 0 113320 363870 0 0 265850 8360 1118 8247 37034;37035;37036 24481;24482 24481 2 VDKLNAAHYSTGK Unmodified 1402.7205 0.72047768 1079 Q13356;Q13356-2;E7EW80 PPIL2 Peptidyl-prolyl cis-trans isomerase-like 2 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 53.764 46.685 3 0.0096279 3 32913 20150910_Q1_SA_NiHu_Masterprac_group13_B 56.139 18.2 5999900 828370 733520 2736300 1115400 586310 0 8361 1079 8248 37037;37038;37039;37040;37041 24483;24484;24485 24483 3 VDKNEAFSSEDSLGENK Unmodified 1867.8436 0.84356552 1176 Q56NI9;H0YB88 ESCO2 N-acetyltransferase ESCO2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 90.738 81.413 3 0.00086764 2 55784 20150910_Q1_SA_NiHu_Masterprac_group15_B 81.854 81.854 8985600 0 2402500 1688500 0 1812500 3082200 8362 1176 8249 37042;37043;37044;37045 24486;24487 24486 2 VDKNEAFSSEDSLGENKTISPK Unmodified 2394.1551 0.15506326 1176 Q56NI9;H0YB88 ESCO2 N-acetyltransferase ESCO2 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching 2 2 1 112.85 97.226 3;4 0.00053155 4 65642 20150910_Q1_SA_NiHu_Masterprac_group10_C 54.857 40.752 16189000 5367600 0 8227700 0 2594100 0 8363 1176 8250 37046;37047;37048;37049;37050 24488;24489;24490;24491 24490 3 VDKQTALLDADDPVSQLHK Unmodified 2092.08 0.08004782 1042 Q06330;D6R927;Q06330-5;Q06330-4;Q06330-6;Q06330-7;Q06330-3;Q06330-2;H0Y8R3 RBPJ Recombining binding protein suppressor of hairless yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 2 130.91 123.96 3;4 3.3283E-229 11 83352 20150910_Q1_SA_NiHu_Masterprac_group13_B 164.5 134.77 144780000 37103000 21739000 14321000 28241000 3470500 39904000 8364 1042 8251 37051;37052;37053;37054;37055;37056;37057;37058;37059 24492;24493;24494;24495;24496;24497;24498;24499;24500;24501;24502 24495 11 VDLAVTRDEAAK Unmodified 1286.683 0.68302954 422 E9PDD9;Q9NW13 RBM28 RNA-binding protein 28 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 83.131 74.057 2 0.0051201 3 56495 20150910_Q1_SA_NiHu_Masterprac_group15_C 88.163 55.833 3600700 713590 724870 401540 0 1013000 747680 8365 422 8252 37060;37061;37062;37063;37064 24503;24504;24505 24503 3 VDLETVPK Unmodified 899.4964 0.49639797 1280 Q8IWC1-2;Q8IWC1;H7BY77;Q8IWC1-3 MAP7D3 MAP7 domain-containing protein 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 96.407 88.461 2 0.011726 2 60551 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.069 48.199 6924800 294280 2082900 857700 316070 966930 2406900 8366 1280 8253 37065;37066;37067;37068;37069;37070 24506;24507 24506 2 VDLGLPEKK Unmodified 997.5808 0.5807963 1157 Q1ED39;H3BMC9 KNOP1 Lysine-rich nucleolar protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 93.487 85.642 2 0.034775 1 58646 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.665 47.871 8600600 1189200 1393900 872200 1066200 1888700 2190400 8367 1157 8254 37071;37072;37073;37074;37075;37076 24508 24508 1 VDLSTSTDWK Unmodified 1150.5506 0.55061839 1439 Q9BQ69 MACROD1 O-acetyl-ADP-ribose deacetylase MACROD1 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 115.88 108.11 2 0.010621 4 71353 20150910_Q1_SA_NiHu_Masterprac_group10_B 72.848 45.076 12007000 1707300 3291100 1744600 1138800 0 4124700 8368 1439 8255 37077;37078;37079;37080;37081 24509;24510;24511;24512 24511 4 VDLSTSTDWKEAK Unmodified 1478.7253 0.72528829 1439 Q9BQ69 MACROD1 O-acetyl-ADP-ribose deacetylase MACROD1 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 106.39 98.392 2;3 1.5479E-241 7 70786 20150910_Q1_SA_NiHu_Masterprac_group15_C 184.11 136.06 44580000 8844500 13766000 4927700 2938900 5406900 8696000 8369 1439 8256 37082;37083;37084;37085;37086;37087;37088;37089;37090;37091;37092 24513;24514;24515;24516;24517;24518;24519 24515 7 VDMKEEPLAVSK Unmodified 1344.6959 0.69590241 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 98.786 89.757 2;3 7.2542E-31 5 61316 20150910_Q1_SA_NiHu_Masterprac_group10_C 122.46 64.574 8869600 0 701240 4223900 1920600 1269100 754710 8370 919;920 8257 37093;37094;37095;37096;37097;37098;37099;37100;37101 24520;24521;24522;24523;24524 24524 5 VDNDENEHQLSLR Unmodified 1567.7227 0.72266253 801 P06748-2;P06748;P06748-3;E5RGW4 NPM1 Nucleophosmin yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 77.752 70.241 2;3 7.2002E-36 8 48702 20150910_Q1_SA_NiHu_Masterprac_group15_B 124.81 94.476 193750000 7051700 42847000 11067000 4663700 69181000 58938000 8371 801 8258 37102;37103;37104;37105;37106;37107;37108;37109;37110;37111;37112;37113 24525;24526;24527;24528;24529;24530;24531;24532 24528 8 VDNDENEHQLSLRTVSLGAGAK Unmodified 2352.167 0.16696535 801 P06748-2;P06748;P06748-3;E5RGW4 NPM1 Nucleophosmin yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 3 1 126.97 115.5 3;4 2.6275E-113 7 76381 20150910_Q1_SA_NiHu_Masterprac_group10_C 136.81 118.58 283270000 152550000 455510 40560000 13795000 60244000 15667000 8372 801 8259 37114;37115;37116;37117;37118;37119;37120;37121;37122;37123;37124 24533;24534;24535;24536;24537;24538;24539 24538 7 VDNEILDYK Unmodified 1107.5448 0.54480473 13 O14639-4;O14639-3;O14639-5;Q5JVV3;H0Y3K7;F8WAB1;Q5T6N2;F8WAB0;O14639-2;F8W8M4;A6NKJ2;O14639;Q5T6N4;A6NCD9;H0Y7N6;F6XFR5 ABLIM1 Actin-binding LIM protein 1 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 115.55 107.47 2 0.02747 3 73360 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.719 35.945 9081000 0 245190 2246100 1190000 1125700 4274000 8373 13 8260 37125;37126;37127;37128;37129 24540;24541;24542 24542 3 VDPEIQNVK Unmodified 1040.5502 0.55022446 302 P35908;CON__P35908;CON__Q3TTY5 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 71.398 69.315 2 2.9821E-19 2 48468 20150910_Q1_SA_NiHu_Masterprac_group10_B 126.24 91.064 38265000 0 15830000 0 0 0 22435000 + 8374 302 8261 37130;37131 24543;24544 24544 2 VDPEIQNVKAQER Unmodified 1524.7896 0.78961988 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 2 1 2 77.298 70.553 2;3 0.0013983 5 50556 20150910_Q1_SA_NiHu_Masterprac_group10_C 78.964 62.239 53030000 1776800 14452000 19752000 4815700 3008700 9224500 + 8375 302 8262 37132;37133;37134;37135;37136;37137;37138;37139;37140;37141;37142 24545;24546;24547;24548;24549 24549 5 VDPEIQNVKAQEREQIK Unmodified 2023.0698 0.069817485 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 2 By matching By matching By MS/MS By MS/MS By matching By matching 1 2 2 2 2 92.754 84.632 3;4 0.0092919 3 64473 20150910_Q1_SA_NiHu_Masterprac_group13_C 43.042 33.846 13430000 0 1094400 4263600 3409000 1708900 2953900 + 8376 302 8263 37143;37144;37145;37146;37147;37148;37149;37150;37151 24550;24551;24552 24552 3 VDPTYGLESSCIAGTGPDEPEK Unmodified 2321.0369 0.036921956 1365 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 131.92 131.62 2 2.9484E-33 2 84728 20150910_Q1_SA_NiHu_Masterprac_group10_B 102.15 85.469 18078000 0 10072000 0 8006600 0 0 8377 1365 8264 37152;37153 24553;24554 24554 1 VDPTYGLESSCIAGTGPDEPEKLEGAEEEK Unmodified 3206.4449 0.44489885 1365 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 132.56 132.56 3 1.7215E-30 1 85579 20150910_Q1_SA_NiHu_Masterprac_group13_B 84.674 80.091 11473000 0 0 0 11473000 0 0 8378 1365 8265 37154 24555 24555 1 VDQETLTEMVKPSIDYVRHK Unmodified 2387.2155 0.21549544 1541 Q9NS86 LANCL2 LanC-like protein 2 yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 130.64 121.17 4 9.4359E-18 5 79115 20150910_Q1_SA_NiHu_Masterprac_group10_C 97.352 77.419 303830000 69441000 21572000 93236000 24352000 94733000 494720 8379 1541 8266 37155;37156;37157;37158;37159;37160 24556;24557;24558;24559;24560 24560 5 VDQIQEIVTGNPTVIK Unmodified 1752.9622 0.96216452 929 P46940;H0YLE8 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 133.58 132.97 2 0.038485 1 86691 20150910_Q1_SA_NiHu_Masterprac_group10_B 45.342 19.111 34018000 0 34018000 0 0 0 0 8380 929 8267 37161 24561 24561 0 VDQLGSDDIHNALKQTPK Unmodified 1978.012 0.011968255 1117 Q14865-2;Q14865 ARID5B AT-rich interactive domain-containing protein 5B yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 110.48 107.84 3 0.013009 1 73951 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.798 23.557 2613300 0 987450 0 0 0 1625900 8381 1117 8268 37162;37163 24562 24562 1 VDSEENTLNSQTNATSGMNPDGVLSK Unmodified 2707.2243 0.22428181 42 A8MTM6;Q15398;Q15398-1 DLGAP5 Disks large-associated protein 5 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 2 1 131.28 130.87 2;3 1.1452E-12 3 84084 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.925 54.254 27599000 0 23418000 0 4181600 0 0 8382 42 8269 37164;37165;37166 24563;24564;24565 24564 3 VDSETNIEASKLPTSEPEADAEIEPK Unmodified 2798.3345 0.33454376 479 Q9BYW2;F2Z317;H7C3H4 SETD2 Histone-lysine N-methyltransferase SETD2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 130.89 130.29 3 3.3496E-21 1 83672 20150910_Q1_SA_NiHu_Masterprac_group10_B 86.08 64.731 4248100 0 4248100 0 0 0 0 8383 479 8270 37167 24566 24566 1 VDSQYPPVQR Unmodified 1187.5935 0.59348625 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 72.26 64.916 2 0.01091 2 50541 20150910_Q1_SA_NiHu_Masterprac_group15_C 72.096 51.809 8164000 335760 1393000 292600 195690 2813500 3133300 8384 531 8271 37168;37169;37170;37171;37172;37173 24567;24568 24568 2 VDVEEEFFALRK Unmodified 1480.7562 0.75619449 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 138.26 122.57 3 0.0012603 1 83184 20150910_Q1_SA_NiHu_Masterprac_group10_C 74.611 45.903 11144000 11144000 0 0 0 0 0 8385 919;920 8272 37174 24569 24569 1 VDVGKDQEFTVK Unmodified 1363.6983 0.69834526 860 Q5HY54;P21333-2;P21333;A6NDY9 FLNA Filamin-A yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 88.433 86.576 3 0.006638 1 59355 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.732 37.718 1249900 0 0 0 0 0 1249900 8386 860 8273 37175 24570 24570 1 VDVSCEPLEGVEK Unmodified 1459.6865 0.68645994 1063 Q12888;Q12888-2;A6NNK5;F8VY86;C9JXV0;H7C3N7 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 121.18 114.1 2 0.0049411 1 75734 20150910_Q1_SA_NiHu_Masterprac_group10_C 61.409 47.68 4370300 1015200 1099800 0 0 0 2255400 8387 1063 8274 37176;37177;37178 24571 24571 1 VEAALNENTCR Unmodified 1275.5877 0.58774895 361 Q9GZR1-2;Q9GZR1;E7EQN6;H0Y4F4;F8W6D9;F5GZW5 SENP6 Sentrin-specific protease 6 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 64.708 56.837 2 0.0040183 1 40377 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.23 60.5 2289100 0 0 600410 0 0 1688600 8388 361 8275 37179;37180 24572 24572 1 VEAALNENTCRAER Unmodified 1631.7686 0.76856686 361 Q9GZR1-2;Q9GZR1;E7EQN6;H0Y4F4;F8W6D9;F5GZW5 SENP6 Sentrin-specific protease 6 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 62.89 56.212 3 0.0015755 3 39640 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.676 55.35 7445800 0 2448100 1815000 553980 581550 2047200 8389 361 8276 37181;37182;37183;37184;37185 24573;24574;24575 24574 3 VEADRPGK Acetyl (Protein N-term) 912.46649 0.46649483 1379;649 Q96E39;O75526;H3BT71;P38159-2;P38159;H0Y6E7;H3BNC1;H3BR27;P38159-3 RBMXL1;RBMXL2;RBMX RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X-linked-like-2;RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed no no 1 0 1 By matching By matching By MS/MS By matching By matching By matching 1 51.136 40.057 2 0.036534 1 32440 20150910_Q1_SA_NiHu_Masterprac_group13_C 71.692 45.587 2301900 0 0 2301900 0 0 0 8390 1379;649 8277 37186 24576 24576 1 VEALPEQVAPESR Unmodified 1423.7307 0.73070802 1417 Q96RE7 NACC1 Nucleus accumbens-associated protein 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 107.65 102.01 2 0.0016824 3 67576 20150910_Q1_SA_NiHu_Masterprac_group10_B 86.756 55.081 26057000 0 7180500 6413100 1026400 0 11437000 8391 1417 8278 37187;37188;37189;37190 24577;24578;24579 24579 3 VEAPETNIDKTPK Unmodified 1440.746 0.74602373 97 B4DLG2;O75152;E9PQ61;E9PBY7 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 70.798 67.656 3 0.030061 1 48459 20150910_Q1_SA_NiHu_Masterprac_group10_C 44.829 15.024 1534400 567350 0 0 568010 0 399020 8392 97 8279 37191;37192;37193 24580 24580 1 VEAPEYIPISDDPK Unmodified 1571.7719 0.77190413 1157 Q1ED39;H3BPL4 KNOP1 Lysine-rich nucleolar protein 1 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 132.91 115.74 2 0.0012925 3 81636 20150910_Q1_SA_NiHu_Masterprac_group15_C 79.875 37.558 19082000 10168000 0 5358600 0 3555800 0 8393 1157 8280 37194;37195;37196 24581;24582;24583 24581 3 VEDAADSATKPENLSSK Unmodified 1760.8428 0.84283724 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 2 2 2 67.291 59.725 2;3 6.4912E-45 7 41622 20150910_Q1_SA_NiHu_Masterprac_group13_B 117.18 98.241 139010000 10102000 30351000 24260000 9104100 22573000 42617000 8394 919 8281 37197;37198;37199;37200;37201;37202;37203;37204;37205;37206;37207;37208 24584;24585;24586;24587;24588;24589;24590 24584 7 VEDAADSATKPENLSSKTR Unmodified 2017.9916 0.99162674 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 2 2 1 2 1 66.876 58.536 3;4 0.0011062 10 46807 20150910_Q1_SA_NiHu_Masterprac_group15_C 58.164 47.125 49028000 9868400 10377000 9584100 356950 10313000 8529100 8395 919 8282 37209;37210;37211;37212;37213;37214;37215;37216;37217;37218;37219 24591;24592;24593;24594;24595;24596;24597;24598;24599;24600 24596 10 VEDSTMPIRR Unmodified 1202.6078 0.60775611 1186 Q5SSJ5;B0QZK9;B0QZK8;Q5SSJ5-5 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 66.973 58.885 3 0.0065528 1 41727 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.028 41.451 2291100 622940 0 0 0 1188100 480120 8396 1186 8283 37220;37221;37222 24601 24601 1 VEEAEPEEFVVEK Unmodified 1532.7246 0.72461959 1075 Q13185;C9JMM0;B8ZZ43 CBX3 Chromobox protein homolog 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 124.69 124.09 2 0.001738 1 79381 20150910_Q1_SA_NiHu_Masterprac_group10_B 81.278 37.776 744060 0 744060 0 0 0 0 8397 1075 8284 37223 24602 24602 1 VEEAIQQYER Unmodified 1263.6095 0.60953025 232 Q96Q89-5;Q96Q89-3;Q96Q89;C9J6W2;Q96Q89-2;Q96Q89-4 KIF20B Kinesin-like protein KIF20B yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 91.113 82.891 2 0.010869 2 56481 20150910_Q1_SA_NiHu_Masterprac_group13_B 72.2 72.2 539910 0 0 0 307830 232080 0 8398 232 8285 37224;37225 24603;24604 24603 2 VEEAQGMMK Unmodified 1021.4573 0.45725205 766 O95232;B4DJ96;F5H1W9 LUC7L3 Luc7-like protein 3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 56.431 53.621 2 0.019216 1 38413 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.256 14.58 456360 0 456360 0 0 0 0 8399 766 8286 37226 24605 24605 1 VEEENQGALEMIK Unmodified 1488.713 0.71300904 48 Q5M775-5;Q5M775-3;Q5M775-2;Q5M775-4;A8MV89;Q5M775 SPECC1 Cytospin-B yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 122.58 117.82 2 0.034726 1 80257 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.03 22.906 1057200 0 0 0 0 0 1057200 8400 48 8287 37227 24606 24606 1 VEEETSKASNLEGESNSSETPSTSTVWGGTCK Unmodified 3387.4896 0.48961721 1302 Q8N5C6 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 123.3 113.48 3 1.6051E-24 3 80227 20150910_Q1_SA_NiHu_Masterprac_group13_C 65.875 61.842 62102000 28964000 3315800 27197000 0 0 2624700 8401 1302 8288 37228;37229;37230;37231 24607;24608;24609 24608 3 VEEFCCEECMSK Unmodified 1606.5772 0.57718554 1213 Q5VZL5-2;Q5VZL5;H7C1I7;Q5VZL5-3;Q5VZL5-4 ZMYM4 Zinc finger MYM-type protein 4 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 96.017 89.081 2 0.018667 1 61000 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.576 46.3 986630 0 206650 0 0 254480 525500 8402 1213 8289 37232;37233;37234 24610 24610 1 VEELQACVETAR Unmodified 1403.6715 0.67147858 1121 Q14980-2;Q14980;F5H4J1;F5H6Y5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 99.583 94.469 2 0.011039 1 64325 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.116 32.135 3674100 477770 1430700 0 0 0 1765600 8403 1121 8290 37235;37236;37237 24611 24611 1 VEEVELPVEK Unmodified 1169.618 0.61796967 454 E9PKG1;Q99873-3;Q99873-2;G5E9B6;Q99873;H7C2I1;E9PNR9;E9PQ98;E9PIX6;H0YDE4;B4DJ87;Q9NR22-2;Q9NR22 PRMT1;PRMT8 Protein arginine N-methyltransferase 1;Protein arginine N-methyltransferase 8 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 123.92 114.19 2 5.631E-77 3 78114 20150910_Q1_SA_NiHu_Masterprac_group15_B 149.33 89.424 7773600 1325300 1392500 0 0 803090 4252600 8404 454 8291 37238;37239;37240;37241 24612;24613;24614 24612 3 VEFNIRKPNEGADGQWK Unmodified 1986.9912 0.99117323 1316;1317 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein no no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 2 2 2 2 120.62 110.72 3;4 0.0018348 4 75911 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.546 19.017 72525000 0 0 29902000 7285500 1102700 34234000 8405 1316;1317 8292 37242;37243;37244;37245;37246;37247;37248;37249 24615;24616;24617;24618 24618 4 VEGQRLVYQFK Unmodified 1365.7405 0.74048484 196 B7Z8R4;Q15723-4;E9PCX3;Q15723-2;Q15723-3;Q15723-1;Q15723;D6R9B1;D6RHI1;E9PDQ9;P32519;Q99607 ELF2;ELF1;ELF4 ETS-related transcription factor Elf-2;ETS-related transcription factor Elf-1;ETS-related transcription factor Elf-4 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 116.42 107.26 3 0.01214 3 73504 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.633 20.422 17469000 2805300 2194500 2524400 1817200 3021100 5106500 8406 196 8293 37250;37251;37252;37253;37254;37255 24619;24620;24621 24620 3 VEGVVQHGSKPGLFRK Unmodified 1736.9686 0.9685873 1548 Q9NVH2-4;Q9NVH2-3;Q9NVH2-2;Q9NVH2 INTS7 Integrator complex subunit 7 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 76.473 67.975 4 0.0030164 2 47247 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.377 38.977 2770000 0 0 0 0 716370 2053600 8407 1548 8294 37256;37257 24622;24623 24622 2 VEIDQQQLTQQQLNGN Unmodified 1854.9072 0.90716883 152 B4E0G4;Q8IWS0;E9PC97 PHF6 PHD finger protein 6 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 131.41 114.57 2 0 3 77282 20150910_Q1_SA_NiHu_Masterprac_group10_C 213.83 185.67 25711000 15049000 0 10662000 0 0 0 8408 152 8295 37258;37259 24624;24625;24626 24626 3 VEILANDQGNR Unmodified 1227.6208 0.62076364 846 P17066;P48741 HSPA6;HSPA7 Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 76.525 69.064 2 0.0015352 4 49598 20150910_Q1_SA_NiHu_Masterprac_group10_C 91.313 61.763 23202000 2390600 2754400 3021800 3053500 4678400 7303600 8409 846 8296 37260;37261;37262;37263;37264;37265 24627;24628;24629;24630 24630 4 VEILANDQGNRTTPSYVAFTDTER Unmodified 2696.3042 0.30418711 846 P17066;P48741 HSPA6;HSPA7 Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 132.93 124.78 3 1.4875E-41 2 79139 20150910_Q1_SA_NiHu_Masterprac_group10_C 104.18 86.951 74187000 22607000 51580000 0 0 0 0 8410 846 8297 37266;37267 24631;24632 24632 2 VEILNEHRGEK Unmodified 1322.6943 0.69426293 419 E9PD53;Q9NTJ3;Q9NTJ3-2;E7ET04;C9JR83 SMC4 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 4 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 49.621 48.667 3 0.017771 1 34685 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.532 25.935 463190 0 0 0 0 0 463190 8411 419 8298 37268 24633 24633 1 VELCRYDPEGDNTGEQVAVK Unmodified 2278.0536 0.053575073 868 P23458 JAK1 Tyrosine-protein kinase JAK1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 122.07 112.05 3 6.3978E-07 5 72954 20150910_Q1_SA_NiHu_Masterprac_group10_B 87.654 80.418 23237000 4041900 1773800 12932000 0 0 4489200 8412 868 8299 37269;37270;37271;37272 24634;24635;24636;24637;24638 24637 5 VELCSFSGYK Unmodified 1188.5485 0.5485099 262 C9JXB8;C9JNW5;P83731 RPL24 60S ribosomal protein L24 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 131.66 115.98 2 6.1332E-05 1 77276 20150910_Q1_SA_NiHu_Masterprac_group10_C 107.55 74.556 8795200 8795200 0 0 0 0 0 8413 262 8300 37273 24639 24639 1 VELDNMPLRGK Unmodified 1270.6704 0.67035637 1133 Q15233;F5GYZ3;C9JYS8;C9IZL7;C9J4X2 NONO Non-POU domain-containing octamer-binding protein yes no 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 109.68 101.12 2;3 0.0018158 7 68920 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.184 25.972 26693000 5125900 3238500 4260600 4227900 1630900 8208900 8414 1133 8301 37274;37275;37276;37277;37278;37279;37280;37281;37282;37283;37284 24640;24641;24642;24643;24644;24645;24646 24645 7 VELQCECGR Unmodified 1149.4907 0.49067744 1066 Q12986;Q12986-2;E9PG33 NFX1 Transcriptional repressor NF-X1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 60.092 52.496 2 0.018956 2 37628 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.399 57.783 1452800 0 0 0 0 580310 872520 8415 1066 8302 37285;37286 24647;24648 24647 2 VELTAVGSGSNAR Unmodified 1259.647 0.64697839 1182 Q5H9F3-3;Q5H9F3-2;Q5H9F3 BCORL1 BCL-6 corepressor-like protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 85.023 78.32 2 0.002116 1 53914 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.933 58.165 1489000 0 368410 0 0 236020 884540 8416 1182 8303 37287;37288;37289 24649 24649 1 VELTAVGSGSNARGADPDGSATEK Unmodified 2288.088 0.088046324 1182 Q5H9F3-3;Q5H9F3-2;Q5H9F3 BCORL1 BCL-6 corepressor-like protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 92.351 86.205 3 0.040281 1 59072 20150910_Q1_SA_NiHu_Masterprac_group15_B 30 17.801 5973500 1002900 1243600 1592300 1148600 0 986040 8417 1182 8304 37290;37291;37292;37293;37294 24650 24650 1 VELVTGEEDEK Unmodified 1246.5929 0.59287713 945 P49792;E9PGT0 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 2 1 1 82.269 76.004 2 0.0067117 3 52151 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.672 20.691 19180000 2375200 3241000 0 0 5639800 7924200 8418 945 8305 37295;37296;37297;37298;37299 24651;24652;24653 24651 3 VEMLETERGQQEAK Unmodified 1646.7934 0.79338463 1121 Q14980-2;Q14980;F5H4J1;F5H6Y5 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 72.668 65.674 3 0.0011279 4 45679 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.088 44.016 15190000 1733500 4291400 0 0 4452100 4713200 8419 1121 8306 37300;37301;37302;37303 24654;24655;24656;24657 24654 4 VENAPIVNRFDYAQCK Unmodified 1922.9309 0.93088116 1230 Q6PIJ6-3;Q6PIJ6-2;Q6PIJ6 FBXO38 F-box only protein 38 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 127.13 124.35 3 0.0027693 3 84403 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.095 45.292 5462400 0 661630 0 0 0 4800800 8420 1230 8307 37304;37305 24658;24659;24660 24659 2 VENETDEGDKAQDGENEK Unmodified 2005.8349 0.83485133 1365 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 35.236 29.931 3 0.0017317 1 20503 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.949 62.199 4119300 494220 685680 820070 0 614100 1505300 8421 1365 8308 37306;37307;37308;37309;37310 24661 24661 1 VENGQEPVIK Unmodified 1111.5873 0.58733824 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 2 1 2 1 2 60.421 55.429 2 0.0028576 4 41401 20150910_Q1_SA_NiHu_Masterprac_group10_C 95.483 58.139 93211000 8584700 20074000 13332000 4165000 11359000 35697000 8422 352;968 8309 37311;37312;37313;37314;37315;37316;37317;37318;37319 24662;24663;24664;24665 24665 4 VENGQEPVIKLENR Unmodified 1623.858 0.8580338 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 2 101.34 93.512 2;3 8.857E-05 9 62860 20150910_Q1_SA_NiHu_Masterprac_group13_B 90.229 64.687 46861000 7859700 11778000 6161500 4386500 1614700 15060000 8423 352;968 8310 37320;37321;37322;37323;37324;37325;37326;37327 24666;24667;24668;24669;24670;24671;24672;24673;24674 24666 9 VENLFNEK Unmodified 991.49746 0.4974606 90 P78347-2;P78347-4;P78347-3;B4DH52;P78347 GTF2I General transcription factor II-I yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 2 2 101.7 93.149 2 0.0062105 4 69434 20150910_Q1_SA_NiHu_Masterprac_group13_C 95.502 16.028 43385000 2664800 5617400 6729100 4150000 11210000 13014000 8424 90 8311 37328;37329;37330;37331;37332;37333;37334;37335 24675;24676;24677;24678 24675 4 VENSNTIPVKTR Unmodified 1356.7361 0.73612775 1102 Q14202-2 ZMYM3 Zinc finger MYM-type protein 3 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 64.571 56.223 3 0.037815 1 39712 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.357 28.738 3126700 0 821830 644900 0 551680 1108300 8425 1102 8312 37336;37337;37338;37339 24679 24679 1 VEPAGRSRFTPELQPK Unmodified 1810.969 0.96898123 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 96.361 87.35 4 0.02179 1 66175 20150910_Q1_SA_NiHu_Masterprac_group13_C 39.961 13.983 9793500 0 1967000 3340500 3368600 1117400 0 8426 1109 8313 37340;37341;37342;37343 24680 24680 1 VEPFVCAQCR Unmodified 1264.5693 0.56926211 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 2 101.88 93.712 2 0.0088952 3 63851 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.533 55.54 18932000 0 4774500 2512300 0 151800 11494000 8427 1344 8314 37344;37345;37346;37347;37348 24681;24682;24683 24682 3 VEPHATIAEIK Unmodified 1206.6608 0.66083754 1565 Q9NZ01;B3KSQ1 TECR Very-long-chain enoyl-CoA reductase yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 89.839 82.16 3 0.0020101 2 56365 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.568 47.783 5199100 325260 658530 489500 296370 1122100 2307400 8428 1565 8315 37349;37350;37351;37352;37353;37354 24684;24685 24684 2 VEPIHAVVLPR Unmodified 1228.7292 0.72919187 1301 Q8N5A5-3;Q8N5A5-2;Q8N5A5 ZGPAT Zinc finger CCCH-type with G patch domain-containing protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 125.98 121.12 3 0.0040554 1 82092 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.841 58.222 554440 0 0 0 0 0 554440 8429 1301 8316 37355 24686 24686 1 VEPLEEAIPLPPTKK Unmodified 1659.9447 0.94472354 706 O15446;O15446-2 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 133.29 124.36 3 0.00035732 3 82286 20150910_Q1_SA_NiHu_Masterprac_group15_C 74.966 56.144 38839000 0 0 0 5368300 33471000 0 8430 706 8317 37356;37357;37358 24687;24688;24689 24689 3 VEPMTYLGSSQNEVLNTKPDYQK Unmodified 2640.2741 0.27413253 1488 Q9H410;B4DWT2;Q5JW54;Q9H410-2;Q5JW58;Q9H410-3 DSN1 Kinetochore-associated protein DSN1 homolog yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 132.77 132.77 3 6.0612E-06 1 85781 20150910_Q1_SA_NiHu_Masterprac_group13_B 58.093 38.401 0 0 0 0 0 0 0 8431 1488 8318 37359 24690 24690 1 VEPSALACR Unmodified 1001.4964 0.49641475 516 Q9Y4C1;F5H4E6;F5H070;F8WE62 KDM3A Lysine-specific demethylase 3A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 75.95 67.178 2 0.015798 1 46959 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.92 29.585 2526600 0 0 627610 0 0 1899000 8432 516 8319 37360;37361 24691 24691 1 VEPSALACRSQNLK Unmodified 1571.809 0.80897511 516 Q9Y4C1;F5H4E6;F5H070;F8WE62 KDM3A Lysine-specific demethylase 3A yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 85.84 80.601 3 0.02587 1 55164 20150910_Q1_SA_NiHu_Masterprac_group10_B 43.03 5.8862 6078900 0 2489600 1264100 683020 0 1642100 8433 516 8320 37362;37363;37364;37365 24692 24692 1 VEPVGDVVSTRDPVK Unmodified 1595.8519 0.85188578 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 2 2 110.08 102.33 2;3 0.00079785 7 67405 20150910_Q1_SA_NiHu_Masterprac_group13_B 76.311 56.643 252840000 19874000 46919000 43735000 19197000 15807000 107300000 8434 919;920 8321 37366;37367;37368;37369;37370;37371;37372;37373;37374;37375;37376;37377 24693;24694;24695;24696;24697;24698;24699 24693 7 VEPVGDVVSTRDPVKSQSK Unmodified 2026.0695 0.069483134 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 98.009 89.838 3;4 0.00024546 7 67537 20150910_Q1_SA_NiHu_Masterprac_group13_C 71.601 61.46 276770000 51381000 47184000 77132000 28679000 27816000 44574000 8435 919;920 8322 37378;37379;37380;37381;37382;37383;37384;37385;37386;37387;37388;37389;37390 24700;24701;24702;24703;24704;24705;24706 24701 6 VEPYSLTAQQSSLIR Unmodified 1690.889 0.88899957 175 B5ME40;F5GXG0;Q96T88 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.86 132.26 2 0.0071676 1 85848 20150910_Q1_SA_NiHu_Masterprac_group10_B 50.158 16.407 11467000 0 11467000 0 0 0 0 8436 175 8323 37391 24707 24707 1 VEPYSLTAQQSSLIREDK Unmodified 2063.0535 0.053498719 175 B5ME40;F5GXG0;Q96T88 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 131.87 121.55 3 4.0582E-182 3 77907 20150910_Q1_SA_NiHu_Masterprac_group10_C 158.17 113.78 55012000 13056000 0 0 0 0 41956000 8437 175 8324 37392;37393 24708;24709;24710 24710 3 VEPYSLTAQQSSLIREDKSNAK Unmodified 2463.2605 0.26053138 175 B5ME40;F5GXG0;Q96T88 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 0 0 2 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 2 2 130.12 112.98 3;4 1.2711E-06 6 80794 20150910_Q1_SA_NiHu_Masterprac_group13_C 77.357 63.251 85373000 33492000 0 49661000 0 2220900 0 8438 175 8325 37394;37395;37396;37397;37398;37399 24711;24712;24713;24714;24715;24716 24711 6 VEQATKPSFER Unmodified 1290.6568 0.65681479 1379 Q96E39 RBMXL1 RNA binding motif protein, X-linked-like-1 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 2 2 1 62.081 54.644 2;3 0.013342 2 44263 20150910_Q1_SA_NiHu_Masterprac_group15_C 61.235 12.046 15334000 0 0 955250 2373100 10578000 1428200 8439 1379 8326 37400;37401;37402;37403;37404;37405 24717;24718 24717 2 VEQATKPSFESGR Unmodified 1434.7103 0.71030693 649 H3BT71;P38159-2;P38159;H0Y6E7 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 60.338 55.104 3 0.0024987 3 39111 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.043 43.493 11451000 143490 1667900 0 484220 6286400 2869000 8440 649 8327 37406;37407;37408;37409;37410 24719;24720;24721 24719 3 VEQLGAEGNVEESQK Unmodified 1615.7689 0.76894402 186 B7Z500;Q9Y383-2;Q9Y383;B7Z4Q3 LUC7L2;C7orf55 Putative RNA-binding protein Luc7-like 2;UPF0562 protein C7orf55 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1 78.672 71.052 2 1.0362E-70 4 50892 20150910_Q1_SA_NiHu_Masterprac_group10_C 135.47 101.42 19788000 3336000 6295400 3439400 1802500 4630500 284120 8441 186 8328 37411;37412;37413;37414;37415;37416;37417 24722;24723;24724;24725 24725 3 VEQLGAEGNVEESQKVMDEVEKAR Unmodified 2673.2916 0.29157351 186 B7Z500;Q9Y383-2;Q9Y383;B7Z4Q3 LUC7L2;C7orf55 Putative RNA-binding protein Luc7-like 2;UPF0562 protein C7orf55 yes no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 132.43 123.85 4 0.0022641 3 78666 20150910_Q1_SA_NiHu_Masterprac_group10_C 49.662 36.092 61289000 11243000 7736000 23899000 18412000 0 0 8442 186 8329 37418;37419;37420;37421 24726;24727;24728 24728 2 VEQLQQEYTEMK Unmodified 1524.713 0.71300904 1105 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 114.96 102.66 2 3.0573E-97 3 67630 20150910_Q1_SA_NiHu_Masterprac_group13_B 149.23 116.75 13576000 4043200 0 4650400 3621400 1261300 0 8443 1105 8330 37422;37423;37424;37425 24729;24730;24731 24729 3 VEQPVIEEPALK Unmodified 1350.7395 0.73948179 1157 Q1ED39;H3BPL4 KNOP1 Lysine-rich nucleolar protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 128.75 118.42 2 0.0040708 3 78917 20150910_Q1_SA_NiHu_Masterprac_group10_B 66.004 39.593 7186400 0 1031600 2621900 0 831090 2701700 8444 1157 8331 37426;37427;37428;37429 24732;24733;24734 24734 3 VEQTAFSFLRDHLRCLHVK Unmodified 2355.227 0.2270036 1244 Q7L1W4 LRRC8D Leucine-rich repeat-containing protein 8D yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 132.81 127.85 4 0.0039749 1 87875 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.873 20.436 13434000 0 0 0 0 0 13434000 8445 1244 8332 37430 24735 24735 1 VERADGYEPPVQESV Unmodified 1673.7897 0.78967946 321 D6RAT0;P61247;D6R9B6;H0Y9Y4 RPS3A 40S ribosomal protein S3a yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 2 2 1 114.79 106.57 2 1.0539E-171 3 75380 20150910_Q1_SA_NiHu_Masterprac_group15_C 163.62 147.8 104570000 0 6787700 6305700 24809000 58495000 8174400 8446 321 8333 37431;37432;37433;37434;37435;37436;37437 24736;24737;24738 24736 3 VERLTMQVSSLQR Unmodified 1545.8297 0.82971055 901 P35659;D6R9L5 DEK Protein DEK yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 120.99 111.39 3 8E-24 7 76287 20150910_Q1_SA_NiHu_Masterprac_group15_B 113.53 67.535 66275000 11900000 7885100 13711000 8686200 896560 23196000 8447 901 8334 37438;37439;37440;37441;37442;37443 24739;24740;24741;24742;24743;24744;24745 24743 7 VERLTMQVSSLQREPFTIAQGK Unmodified 2517.3373 0.33734191 901 P35659;D6R9L5 DEK Protein DEK yes no 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 133.13 124.21 4 1.2469E-06 2 86287 20150910_Q1_SA_NiHu_Masterprac_group13_B 77.469 60.602 56013000 0 0 0 36886000 19127000 0 8448 901 8335 37444;37445 24746;24747 24746 2 VERPEAGPLQPQPPQIQNGPMNGCEK Unmodified 2870.3803 0.38034572 246 F8VZ02;C9JGM8;C9JW67;F8W6C2;Q9NUQ6-2;F2Z2S1;C9JKE4;F8VT91;B8ZZZ7;Q9NUQ6;B4DT67;C9J8M7 SPATS2L SPATS2-like protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.72 125.76 3 0.037983 1 85456 20150910_Q1_SA_NiHu_Masterprac_group15_B 28.622 5.4263 3099900 0 0 0 0 0 3099900 8449 246 8336 37446 24748 24748 1 VETFSSLK Unmodified 909.48075 0.48074791 222 C9J0I9;Q86WB0-2;Q86WB0;C9J672;Q86WB0-3 ZC3HC1 Nuclear-interacting partner of ALK yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 88.194 86.338 2 0.027829 1 59160 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.879 37.386 772580 0 0 0 0 0 772580 8450 222 8337 37447 24749 24749 1 VETLSPESALQGSPR Unmodified 1569.7999 0.79985021 1434 Q99958 FOXC2 Forkhead box protein C2 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 130.76 123.67 2 3.752E-21 3 85606 20150910_Q1_SA_NiHu_Masterprac_group15_B 111.64 90.329 13190000 2940000 5819100 0 0 0 4430500 8451 1434 8338 37448;37449;37450 24750;24751;24752 24750 2 VETPSHPGGVSEEFWER Unmodified 1941.8857 0.88570511 1356 Q92620;H3BQT9 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 130.98 130.67 3 1.2603E-21 1 83755 20150910_Q1_SA_NiHu_Masterprac_group10_B 104.21 83.353 9472300 0 5994600 0 3477700 0 0 8452 1356 8339 37451;37452 24753 24753 1 VETQTEELKQNESR Unmodified 1689.817 0.81695684 1222 Q6KC79-2;Q6KC79;Q6KC79-3 NIPBL Nipped-B-like protein yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 54.769 48.703 3 1.313E-41 2 34634 20150910_Q1_SA_NiHu_Masterprac_group15_B 119.25 92.311 12308000 1335300 2551100 0 0 3049200 5372000 8453 1222 8340 37453;37454;37455;37456 24754;24755 24754 2 VETTDCPVPPK Unmodified 1241.5962 0.59618837 23 A6NHR9 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 3 2 1 2 3 3 69.454 63.21 2 0.0041726 5 43585 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.342 48.415 6939100 1571700 870620 297630 696820 1343600 2158700 8454 23 8341 37457;37458;37459;37460;37461;37462;37463;37464;37465;37466;37467;37468;37469;37470 24756;24757;24758;24759;24760 24756 5 VETVHCSACSVYIPALHSSVQQHLKSPDHIKGK Unmodified 3711.8614 0.86136839 1177 Q5BKZ1;Q5BKZ1-3 ZNF326 DBIRD complex subunit ZNF326 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 2 129.78 124.81 5;7 8.5505E-11 2 84574 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.466 50.144 38158000 0 0 0 0 0 38158000 8455 1177 8342 37471;37472 24761;24762 24762 2 VETVSQPSESPK Unmodified 1286.6354 0.63541065 547 Q99590-2;F8VXG7;Q99590;F8W028 SCAF11 Protein SCAF11 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 56.882 50.379 2 1.7815E-97 9 36261 20150910_Q1_SA_NiHu_Masterprac_group15_B 151.55 92.348 26333000 4820600 4152800 3247300 2899800 4291100 6921600 8456 547 8343 37473;37474;37475;37476;37477;37478;37479 24763;24764;24765;24766;24767;24768;24769;24770;24771 24767 9 VEVKEELLAVGK Unmodified 1312.7602 0.76021723 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 128.22 116.24 2;3 2.6908E-79 6 81715 20150910_Q1_SA_NiHu_Masterprac_group13_C 144.28 98.621 109150000 58027000 0 35499000 401860 2480200 12739000 8457 919;920 8344 37480;37481;37482;37483;37484;37485;37486 24772;24773;24774;24775;24776;24777 24773 6 VEVLKEQVSIK Unmodified 1270.7497 0.74965254 1546 Q9NUQ3;Q9NUQ3-2 TXLNG Gamma-taxilin yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 109.48 103.67 3 0.014541 1 69277 20150910_Q1_SA_NiHu_Masterprac_group10_C 59.84 29.016 10538000 869330 0 0 534930 0 9134000 8458 1546 8345 37487;37488;37489 24778 24778 1 VEVPSSASQAK Unmodified 1101.5666 0.5666028 255 C9JJU9;Q96P11-2 NSUN5 Putative methyltransferase NSUN5 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 60.514 54.037 2 0.00048753 4 43837 20150910_Q1_SA_NiHu_Masterprac_group15_C 102.4 49.911 14517000 0 3058100 2146500 1028700 2609700 5674300 8459 255 8346 37490;37491;37492;37493;37494 24779;24780;24781;24782 24781 3 VEYSEEELKTHISK Unmodified 1690.8414 0.84138068 60 B1AHC9;B1AHC8;P12956;F5H1I8 XRCC6 X-ray repair cross-complementing protein 6 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 97.149 89.136 3 0.0031868 2 61112 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.657 23.713 12737000 1981500 1228500 1127000 925820 3917800 3556700 8460 60 8347 37495;37496;37497;37498;37499;37500 24783;24784 24783 2 VFCVEEEDSESSLQK Unmodified 1784.7775 0.77745979 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 1 2 117.97 109.16 2;3 1.7642E-05 8 71631 20150910_Q1_SA_NiHu_Masterprac_group10_B 90.412 72.021 98271000 21859000 14373000 9642700 6006800 22731000 23659000 8461 1111 8348 37501;37502;37503;37504;37505;37506;37507;37508;37509 24785;24786;24787;24788;24789;24790;24791;24792 24791 8 VFETLEAR Unmodified 963.50255 0.50254598 329 D6RH30;P19838;P19838-2 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 100.8 93.685 2 0.02554 1 69616 20150910_Q1_SA_NiHu_Masterprac_group13_C 75.043 39.425 4630100 0 1068100 797450 0 0 2764500 8462 329 8349 37510;37511;37512 24793 24793 1 VFEVMLATDRSHYAK Unmodified 1765.8821 0.88214006 566 F8WDT3;F8WAV5;F8WAX2;P22061;P22061-2;H7BY58 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase;Protein-L-isoaspartate O-methyltransferase yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 2 3 2 2 129.98 119.8 3;4 1.5762E-86 8 85019 20150910_Q1_SA_NiHu_Masterprac_group15_B 137.62 108.67 60704000 0 0 19038000 5687300 5131500 30847000 8463 566 8350 37513;37514;37515;37516;37517;37518;37519;37520;37521;37522 24794;24795;24796;24797;24798;24799;24800;24801 24797 8 VFFTCNACGESVK Unmodified 1517.6643 0.66428471 1559 Q9NX58;D6RDJ1 LYAR Cell growth-regulating nucleolar protein yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 122.42 112.92 2 3.1834E-47 5 75149 20150910_Q1_SA_NiHu_Masterprac_group10_C 130.15 111.82 27770000 5988900 4246200 1411500 815810 12379000 2928000 8464 1559 8351 37523;37524;37525;37526;37527;37528 24802;24803;24804;24805;24806 24806 4 VFFTCNACGESVKK Unmodified 1645.7592 0.75924773 1559 Q9NX58;D6RDJ1 LYAR Cell growth-regulating nucleolar protein yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 104.05 94.133 3 0.00057287 4 68600 20150910_Q1_SA_NiHu_Masterprac_group15_C 72.891 45.157 16325000 3905900 1931900 735060 0 6586400 3165500 8465 1559 8352 37529;37530;37531;37532;37533 24807;24808;24809;24810 24809 4 VFGSLERGLDK Unmodified 1219.6561 0.65608651 507 F5H2R4;F5H0Y0;F5H689;Q14680;B7Z6Y0;B7Z7Q1;A6P3A8;A6P3A7 MELK Maternal embryonic leucine zipper kinase yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 112.15 103.06 3 0.037069 1 70561 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.466 19.915 3100800 334110 680450 684700 0 0 1401500 8466 507 8353 37534;37535;37536;37537 24811 24811 1 VFIGNLNTLVVKK Unmodified 1443.8813 0.88133542 68 G3V576;G3V4W0;B4DY08;G3V4C1;P07910-2;B2R603;G3V2Q1;P07910;P07910-3;G3V555;G3V575;P07910-4;O60812;G3V2H6;G3V4M8;Q569J8;G3V5X6;G3V3K6;G3V251;B4DSU6 HNRNPC;HNRNPCL1;HNRPC Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 133.37 115.52 3 0.0010009 1 82437 20150910_Q1_SA_NiHu_Masterprac_group15_C 84.352 60.076 19516000 0 0 0 0 19516000 0 8467 68 8354 37538 24812 24812 1 VFIQHITLSDEER Unmodified 1585.81 0.81002097 1107 Q14527;Q14527-2;H7C5K0 HLTF Helicase-like transcription factor yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.42 126.46 3 0.00030375 1 86266 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.766 58.997 19849000 0 0 0 0 0 19849000 8468 1107 8355 37539 24813 24813 1 VFIQHITLSDEERK Unmodified 1713.905 0.90498399 1107 Q14527;Q14527-2;H7C5K0 HLTF Helicase-like transcription factor yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 3 121.27 111.11 2;3;4 2.5431E-12 10 76299 20150910_Q1_SA_NiHu_Masterprac_group15_B 105.14 70.1 122360000 3958000 14503000 39300000 0 807110 63797000 8469 1107 8356 37540;37541;37542;37543;37544;37545;37546;37547;37548;37549 24814;24815;24816;24817;24818;24819;24820;24821;24822;24823 24817 9 VFKHKELQQQLVDAK Unmodified 1810.0101 0.010117761 1546 Q9NUQ3;Q9NUQ3-2 TXLNG Gamma-taxilin yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 88.965 77.987 4 0.0022143 1 58562 20150910_Q1_SA_NiHu_Masterprac_group15_C 59.225 42.161 2412100 0 0 696360 702350 1013400 0 8470 1546 8357 37550;37551;37552 24824 24824 1 VFLNGNKLPVK Unmodified 1227.7339 0.7339429 655 P11388;H7BXX8;P11388-2;P11388-3;P11388-4;C9J5P2;H7BXH5 TOP2A DNA topoisomerase 2-alpha yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 114.26 110.2 3 0.0043744 1 75319 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.662 7.9908 2341100 0 0 0 0 0 2341100 8471 655 8358 37553 24825 24825 1 VFLNGNKLPVKGFR Unmodified 1587.9249 0.92493157 655 P11388;H7BXX8;P11388-2;P11388-3;P11388-4;C9J5P2;H7BXH5 TOP2A DNA topoisomerase 2-alpha yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 131.45 126.48 3 0.016382 1 86266 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.179 47.313 4974700 0 0 0 0 0 4974700 8472 655 8359 37554 24826 24826 0 VFLQDHCLAEGYGTK Unmodified 1736.8192 0.81920545 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 131.13 115.44 3 0.00541 1 76716 20150910_Q1_SA_NiHu_Masterprac_group10_C 51.073 34.499 9231100 9231100 0 0 0 0 0 8473 578 8360 37555 24827 24827 1 VFLQDHCLAEGYGTKK Unmodified 1864.9142 0.91416847 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 110.37 103.99 3 0.0016243 1 71269 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.237 41.175 2987900 888620 717910 0 0 0 1381400 8474 578 8361 37556;37557;37558 24828 24828 1 VFNLYPR Unmodified 907.49159 0.49158736 118 B4DR31;Q16555;Q8NAN9 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 130.53 125.57 2 0.0099703 2 85290 20150910_Q1_SA_NiHu_Masterprac_group15_B 103.29 53.159 4125900 0 0 0 0 0 4125900 8475 118 8362 37559 24829;24830 24830 2 VFQFLNAK Unmodified 965.53345 0.53345218 262 C9JXB8;C9JNW5;P83731 RPL24 60S ribosomal protein L24 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 133.23 133.23 2 4.9215E-09 1 86290 20150910_Q1_SA_NiHu_Masterprac_group13_B 120.49 69.153 12293000 0 0 0 12293000 0 0 8476 262 8363 37560 24831 24831 1 VFQGTDEQLNDLYHNHQR Unmodified 2213.025 0.024992557 1362 Q92878-2;Q92878;Q92878-3;E7EN38;E7ESD9 RAD50 DNA repair protein RAD50 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 123.33 113.83 3;4 4.3751E-74 10 80564 20150910_Q1_SA_NiHu_Masterprac_group13_C 128.82 117.9 58770000 15590000 5311500 18418000 3251100 7148600 9050000 8477 1362 8364 37561;37562;37563;37564;37565;37566;37567;37568;37569;37570;37571;37572 24832;24833;24834;24835;24836;24837;24838;24839;24840;24841 24832 10 VFQSLPHENKPLTLSNYQTNKAK Unmodified 2656.3973 0.39729963 786 P04080 CSTB Cystatin-B yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 2 121.96 113.69 4;5 0.0027582 2 77599 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.848 38.627 8060200 1781100 0 0 0 0 6279100 8478 786 8365 37573;37574;37575 24842;24843 24843 1 VFQVLNEK Unmodified 975.53893 0.53893149 891 P33981-2;P33981 TTK Dual specificity protein kinase TTK yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 111.91 102.96 2 0.0020801 3 75216 20150910_Q1_SA_NiHu_Masterprac_group13_C 111.17 61.452 16998000 1206600 2938600 2856400 2180100 919340 6897000 8479 891 8366 37576;37577;37578;37579;37580;37581 24844;24845;24846 24844 3 VFRPRTPPEAIALCSR Unmodified 1869.0043 0.004320877 946 P49841;P49841-2;F5H615 GSK3B Glycogen synthase kinase-3 beta yes no 0 0 2 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 124.74 115.26 4 0.0017322 3 80887 20150910_Q1_SA_NiHu_Masterprac_group13_C 59.673 42.926 17122000 3004400 1733400 6473500 1225400 1219000 3466200 8480 946 8367 37582;37583;37584;37585;37586;37587 24847;24848;24849 24847 3 VFRSQCLQVPER Unmodified 1517.7773 0.77728105 1442 Q9BRP1 PDCD2L Programmed cell death protein 2-like yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 102.45 96.103 3 0.0097929 2 69728 20150910_Q1_SA_NiHu_Masterprac_group15_C 59.294 17.61 11533000 0 2706100 0 2054800 6772200 0 8481 1442 8368 37588;37589;37590 24850;24851 24850 2 VFRSQCLQVPEREAQDAQK Unmodified 2288.1332 0.1331628 1442 Q9BRP1 PDCD2L Programmed cell death protein 2-like yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 102.68 94.315 4 2.4493E-26 9 63051 20150910_Q1_SA_NiHu_Masterprac_group10_B 103.04 72.096 73784000 10091000 6848700 7914600 14701000 20570000 13658000 8482 1442 8369 37591;37592;37593;37594;37595;37596 24852;24853;24854;24855;24856;24857;24858;24859;24860 24858 8 VFRVYQGQQPGTCMGSK Unmodified 1941.9189 0.91893627 337 H0YCY5;E9PNY0;G8JLP0;Q9UIF7-6;Q9UIF7-5;Q9UIF7-4;Q9UIF7-3;Q9UIF7-2;Q9UIF7;E5KP25 MUTYH A/G-specific adenine DNA glycosylase yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 107.24 98.461 3 0.0021521 5 65275 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.097 36.935 11888000 1073200 2252800 1726400 948110 1461900 4425500 8483 337 8370 37597;37598;37599;37600;37601;37602 24861;24862;24863;24864;24865 24865 5 VFSHSSNLIK Unmodified 1130.6084 0.60840804 194 B7Z7H3;Q969J2;H7C1Y5;H7BY15 ZKSCAN4 Zinc finger protein with KRAB and SCAN domains 4 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 80.824 72.327 2 0.027871 1 56998 20150910_Q1_SA_NiHu_Masterprac_group13_C 58.246 39.28 3978700 0 0 704890 485860 680750 2107200 8484 194 8371 37603;37604;37605;37606 24866 24866 1 VFSVNGAR Unmodified 848.45045 0.45045083 974 P57060 RWDD2B RWD domain-containing protein 2B yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 68.998 66.915 2 0.0067418 1 46587 20150910_Q1_SA_NiHu_Masterprac_group15_B 106.36 43.642 2846400 0 1026000 0 0 0 1820500 8485 974 8372 37607;37608 24867 24867 1 VFVEDDENSSQK Unmodified 1395.6154 0.61540349 1607 Q9ULJ3-2;Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 64.255 57.278 2 0.001934 6 41028 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.772 78.64 6870500 434640 1131400 1346500 643150 1179700 2135100 8486 1607 8373 37609;37610;37611;37612;37613;37614 24868;24869;24870;24871;24872;24873 24870 6 VGADITVLRER Unmodified 1227.6935 0.69353465 613 H0Y7A5;Q9BX10-2;Q9BX10-4;Q9BX10 GTPBP2 GTP-binding protein 2 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 110.98 102.09 3 0.0025259 4 68130 20150910_Q1_SA_NiHu_Masterprac_group10_C 87.258 50.673 12263000 2571600 1509200 2081400 2554900 429260 3116700 8487 613 8374 37615;37616;37617;37618;37619;37620;37621 24874;24875;24876;24877 24877 4 VGASASDGSVCVLDLRK Unmodified 1732.8778 0.87778296 185 B7Z475;Q9BZK7 TBL1XR1 F-box-like/WD repeat-containing protein TBL1XR1 no no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 120.32 118.5 3 0.00012814 3 80689 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.508 53.465 13530000 0 3829400 0 1443800 0 8256500 8488 185 8375 37622;37623;37624 24878;24879;24880 24879 3 VGATAAVYSAAILEYLTAEVLELAGNASK Unmodified 2894.5277 0.52770468 816 Q71UI9;P0C0S5;A6NKY0;Q71UI9-2;C9J0D1 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z;Histone H2A yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 135.5 117.65 3 0.028333 1 84441 20150910_Q1_SA_NiHu_Masterprac_group15_C 25.645 20.061 4434800 0 0 0 0 4434800 0 8489 816 8376 37625 24881 24881 1 VGDCVFIK Unmodified 936.47389 0.47388839 1260 Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-3;Q86U86-9;Q86U86-2;Q86U86-8;Q86U86;E7EVG2 PBRM1 Protein polybromo-1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 106.11 98.805 2 0.029415 1 67244 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.379 24.298 4270400 0 908700 0 0 1178700 2182900 8490 1260 8377 37626;37627;37628 24882 24882 1 VGDFVATDLDTGRPSTTVR Unmodified 2006.0069 0.006882877 1033 Q02413 DSG1 Desmoglein-1 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 130.68 130.37 3 0.00048025 2 83473 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.477 44.722 82072000 0 61593000 0 20479000 0 0 8491 1033 8378 37629;37630 24883;24884 24884 2 VGDGDLSAEEIPENEVSLR Unmodified 2027.9647 0.96474329 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 133.02 126.87 2 6.9655E-295 3 85906 20150910_Q1_SA_NiHu_Masterprac_group10_B 174.59 136.53 41114000 0 28680000 0 9253700 3180500 0 8492 1111 8379 37631;37632;37633 24885;24886;24887 24887 3 VGDGDLSAEEIPENEVSLRR Unmodified 2184.0659 0.065854319 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 2 132.35 118.37 3 1.9592E-101 4 82717 20150910_Q1_SA_NiHu_Masterprac_group13_C 135.57 98.986 410300000 82842000 238380000 63237000 0 25839000 0 8493 1111 8380 37634;37635;37636;37637;37638 24888;24889;24890;24891 24888 4 VGDGDLSAEEIPENEVSLRRAVSK Unmodified 2569.2984 0.29837345 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 2 131.67 123.03 3;4 3.58E-30 5 84229 20150910_Q1_SA_NiHu_Masterprac_group10_B 97.713 63.063 172650000 46574000 29749000 0 79602000 16729000 0 8494 1111 8381 37639;37640;37641;37642;37643;37644 24892;24893;24894;24895;24896 24895 5 VGDPQELNGITR Unmodified 1297.6626 0.66262845 934 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 106.37 96.148 2 0.022435 1 65695 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.897 11.891 6362400 0 0 931680 0 0 5430700 8495 934 8382 37645;37646 24897 24897 1 VGDVTPQVKGGALPPAK Unmodified 1632.9199 0.91990577 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;Q13428-3;Q13428;Q13428-4;E9PHK9 TCOF1 Treacle protein no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 4 3 3 104.08 93.165 3 1.0127E-11 10 67317 20150910_Q1_SA_NiHu_Masterprac_group15_C 95.854 64.19 23694000 9015000 1505900 3228700 2188400 7755900 0 8496 383;1082 8383 37647;37648;37649;37650;37651;37652;37653;37654;37655;37656;37657;37658;37659;37660;37661;37662 24898;24899;24900;24901;24902;24903;24904;24905;24906;24907 24902 9 VGDYGSLSGREK Unmodified 1266.6204 0.62042929 1584 Q9UBR2 CTSZ Cathepsin Z yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 64.883 56.536 3 0.003951 1 39953 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.252 37.046 3260700 0 435070 1129300 0 363090 1333200 8497 1584 8384 37663;37664;37665;37666 24908 24908 1 VGDYVYFENSSSNPYLVRR Unmodified 2264.0862 0.086195831 754 O94776 MTA2 Metastasis-associated protein MTA2 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 133.23 130.45 3 1.5526E-26 2 85983 20150910_Q1_SA_NiHu_Masterprac_group10_B 102.65 89.715 84098000 0 33337000 0 0 0 50761000 8498 754 8385 37667;37668 24909;24910 24910 2 VGEAPGLQQPQPR Unmodified 1375.7208 0.72081203 916 P42684-7;P42684-5;P42684-6;P42684;P42684-8 ABL2 Abelson tyrosine-protein kinase 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 85.173 78.254 2 0.0076211 1 53903 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.04 36.645 2566100 0 721610 687350 0 0 1157100 8499 916 8386 37669;37670;37671 24911 24911 1 VGEDEEQMMIK Unmodified 1307.5737 0.57373837 769 O95243-2 MBD4 Methyl-CpG-binding domain protein 4 no no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 1 1 1 1 1 106.89 98.145 2 0.0030558 4 65357 20150910_Q1_SA_NiHu_Masterprac_group10_B 84.507 72.586 14413000 1434800 1711900 1517400 1670100 2813600 5265200 8500 769 8387 37672;37673;37674;37675;37676;37677;37678 24912;24913;24914;24915 24914 4 VGEDEEQMMIKR Unmodified 1463.6748 0.6748494 769 O95243-2 MBD4 Methyl-CpG-binding domain protein 4 no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 90.056 86.28 3 0.028555 1 59073 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.691 39.141 2022900 718990 0 0 662240 0 641690 8501 769 8388 37679;37680;37681 24916 24916 0 VGESSEQVSEEK Unmodified 1306.5889 0.58885439 415 F5H4I8;E9PCM7;F5H2R1;P37275;Q2KJ05;F5H8J0;F5H838;Q5VZ84;G3V1R3 ZEB1 Zinc finger E-box-binding homeobox 1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 42.745 37.08 2 0.0019405 1 29877 20150910_Q1_SA_NiHu_Masterprac_group13_C 89.43 69.226 2689500 0 0 1525200 233410 363950 567030 8502 415 8389 37682;37683;37684;37685 24917 24917 1 VGEVIVTK Unmodified 843.50657 0.50656873 820 P10809;F5GWR2 HSPD1 60 kDa heat shock protein, mitochondrial yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 71.086 65.491 2 0.0061452 2 45658 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.668 53.804 7292400 899530 1326200 0 612400 1526000 2928300 8503 820 8390 37686;37687;37688;37689;37690 24918;24919 24918 2 VGGHAAEYGAEALER Unmodified 1528.727 0.72701962 285 CON__P01966 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching 2 1 1 1 94.698 87.169 3 0.00065481 3 64612 20150910_Q1_SA_NiHu_Masterprac_group15_C 78.505 8.2459 3586200 1543200 0 0 500300 870480 672270 + 8504 285 8391 37691;37692;37693;37694;37695 24920;24921;24922 24921 3 VGGNIEVLGFNARQRK Unmodified 1756.9696 0.96964993 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 no no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 129.94 111.94 4 0.0018676 1 80594 20150910_Q1_SA_NiHu_Masterprac_group13_C 68.171 48.927 7536400 0 0 7536400 0 0 0 8505 486 8392 37696 24923 24923 1 VGGRWFPAVCAHSK Unmodified 1570.7827 0.78270078 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 2 2 115.91 105.97 3 6.6283E-20 2 72440 20150910_Q1_SA_NiHu_Masterprac_group15_B 108.23 90.159 162050000 0 0 25616000 15313000 44185000 76940000 8506 352;968 8393 37697;37698;37699;37700;37701;37702 24924;24925 24924 2 VGGSQPPFQGQR Unmodified 1256.6262 0.62618337 1447 Q9BTC0 DIDO1 Death-inducer obliterator 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 70.279 63.561 2 0.0033303 2 44567 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.728 60.18 1865600 0 585600 470750 0 0 809250 8507 1447 8394 37703;37704;37705 24926;24927 24926 2 VGGTSDVEVNEK Unmodified 1232.5885 0.58846046 820 P10809 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 54.279 51.438 2 4.0518E-80 3 36612 20150910_Q1_SA_NiHu_Masterprac_group15_B 148.13 112.95 4663100 1071200 0 0 820320 0 2771600 8508 820 8395 37706;37707;37708 24928;24929;24930 24929 3 VGGVLCTEEK Unmodified 1090.5329 0.53285983 1528 Q9NPG3-2;Q9NPG3 UBN1 Ubinuclein-1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 81.613 65.597 2 0.010869 1 52875 20150910_Q1_SA_NiHu_Masterprac_group13_C 72.2 41.637 1354900 0 0 1122200 0 232660 0 8509 1528 8396 37709;37710 24931 24931 1 VGHVTERTDASSASSFLDSDELER Unmodified 2607.2049 0.204867 334 H0Y4X3;E1P5S2;G3XAC6;Q14498-3;Q14498-2;Q14498 RBM39 RNA-binding protein 39 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 131.04 124.39 3;4 1.2354E-231 7 83388 20150910_Q1_SA_NiHu_Masterprac_group10_B 156.58 156.58 78455000 16303000 38200000 4112200 8461500 0 11378000 8510 334 8397 37711;37712;37713;37714;37715;37716 24932;24933;24934;24935;24936;24937;24938 24936 7 VGILQSEDKQLQPSVSK Unmodified 1855.0051 0.005091963 1170 Q49AG3;E9PJ57;E9PM71 ZBED5 Zinc finger BED domain-containing protein 5 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 121 113.15 3 1.2659E-90 4 80402 20150910_Q1_SA_NiHu_Masterprac_group13_C 133.23 111.78 14640000 2737100 3147000 5297300 794690 0 2664300 8511 1170 8398 37717;37718;37719;37720;37721 24939;24940;24941;24942 24939 4 VGINYQPPTVVPGGDLAK Unmodified 1823.9781 0.97814893 518;44 G3V1U9;Q9BQE3;Q71U36;P68363;F5H5D3;F8VXZ4;Q6PEY2;Q13748;E9PGK3;Q13748-2;Q9NY65-2;Q9NY65;C9J2C0;F8VWX4;E7ET24;A8MUB1;P68366 TUBA1A;TUBA1C;TUBA1B;TUBA3E;TUBA3C;TUBA8;TUBA4A Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-3E chain;Tubulin alpha-3C/D chain;Tubulin alpha-8 chain;Tubulin alpha-4A chain no no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 135.24 133.39 2 0.0059751 1 86479 20150910_Q1_SA_NiHu_Masterprac_group10_B 45.876 12.571 191360000 0 161750000 0 29265000 0 337580 8512 518;44 8399 37722;37723;37724 24943 24943 1 VGINYWLAHK Unmodified 1199.6451 0.64512789 283 CON__P00711 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 132.49 129.71 3 0.017107 2 87825 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.184 37.139 31730000 0 8493600 0 0 0 23237000 + 8513 283 8400 37725;37726 24944;24945 24944 2 VGINYWLAHKALCSEK Unmodified 1887.9665 0.96653839 283 CON__P00711 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 132.53 130.05 3 9.9614E-07 2 85422 20150910_Q1_SA_NiHu_Masterprac_group13_B 89.466 71.571 28697000 0 0 0 12040000 0 16657000 + 8514 283 8401 37727;37728 24946;24947 24946 2 VGIQQGLLSQSTR Unmodified 1385.7627 0.76267685 1465 Q9BY77;Q9BY77-2;F8WCX5;B4DSH9;Q6R954;F8WEE2 POLDIP3;PDIP46 Polymerase delta-interacting protein 3 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 123 117.71 2 0.00074044 3 80603 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.151 40.424 26852000 13990000 3746600 0 1638300 0 7477200 8515 1465 8402 37729;37730;37731;37732 24948;24949;24950 24948 3 VGIRETPENLAK Unmodified 1325.7303 0.73031409 1543 Q9NSD9;F5H6Y1 FARSB Phenylalanine--tRNA ligase beta subunit yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 88.919 81.224 3 0.0065773 3 55387 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.799 31.651 16377000 1592800 3620600 1836700 1252600 3870600 4203700 8516 1543 8403 37733;37734;37735;37736;37737;37738 24951;24952;24953 24953 3 VGLSEMAQK Unmodified 961.49027 0.49026674 1315 Q8NB90;Q8NB90-3;Q8NB90-2 SPATA5 Spermatogenesis-associated protein 5 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 85.059 76.486 2 0.0070209 1 52811 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.668 61.312 6103500 0 0 1194600 635200 1529900 2743800 8517 1315 8404 37739;37740;37741;37742 24954 24954 1 VGLVIGRGGETIK Unmodified 1297.7718 0.77178497 1394 Q96I24;A6NJ37;Q96I24-2 FUBP3 Far upstream element-binding protein 3 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 1 3 2 115.01 104.85 2;3 1.6757E-46 9 71751 20150910_Q1_SA_NiHu_Masterprac_group15_B 129.34 71.171 84359000 4994800 13908000 8278500 3520200 12917000 40741000 8518 1394 8405 37743;37744;37745;37746;37747;37748;37749;37750;37751;37752;37753 24955;24956;24957;24958;24959;24960;24961;24962;24963 24959 9 VGLVIGRGGETIKQLQER Unmodified 1952.1167 0.1167081 1394 Q96I24;A6NJ37;Q96I24-2 FUBP3 Far upstream element-binding protein 3 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 2 130.92 123.97 3;4 2.0635E-91 10 77318 20150910_Q1_SA_NiHu_Masterprac_group10_C 136.34 104.73 156950000 16033000 20510000 41491000 23984000 5315500 49619000 8519 1394 8406 37754;37755;37756;37757;37758;37759;37760;37761;37762 24964;24965;24966;24967;24968;24969;24970;24971;24972;24973 24973 10 VGNESLNRAVAK Unmodified 1256.6837 0.68369824 1475 Q9GZS1-2;Q9GZS1;E7EX70 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 57.245 50.953 3 0.0030242 4 37761 20150910_Q1_SA_NiHu_Masterprac_group10_C 72.434 36.782 5387000 1387200 573870 0 0 1553400 1872600 8520 1475 8407 37763;37764;37765;37766 24974;24975;24976;24977 24977 4 VGPADDGPAPSGEEEGEGGGEAGGKEPAADAAPGPSAAFR Unmodified 3633.6092 0.6091555 1602 Q9UKN8;F2Z356 GTF3C4 General transcription factor 3C polypeptide 4 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 130.28 113.14 3 0.0013988 3 76297 20150910_Q1_SA_NiHu_Masterprac_group10_C 22.585 19.121 13772000 5337200 0 6045100 0 2389900 0 8521 1602 8408 37767;37768;37769 24978;24979;24980 24980 3 VGPATPSAQVGK Unmodified 1110.6033 0.60332266 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-5;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 68.566 61.527 2 0.010971 2 48743 20150910_Q1_SA_NiHu_Masterprac_group15_C 58.172 32.056 11347000 0 2023500 473370 869870 5148400 2831400 8522 383;1082 8409 37770;37771;37772;37773;37774 24981;24982 24982 2 VGPGPTAAAAVEER Unmodified 1323.6783 0.67827852 567 F8WBE0;Q8IYA6 CKAP2L Cytoskeleton-associated protein 2-like yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 96.63 88.617 2 0.0028132 2 60718 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.081 40.835 7018700 424440 1241100 693390 860760 1674500 2124600 8523 567 8410 37775;37776;37777;37778;37779;37780 24983;24984 24984 2 VGPSNQPSTSAR Unmodified 1199.5895 0.58946351 1411 Q96PU4;Q96PU4-2;B1AL33 UHRF2 E3 ubiquitin-protein ligase UHRF2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 42.059 36.117 2 0.00063323 1 25364 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.839 55.035 942680 0 0 0 0 282840 659840 8524 1411 8411 37781;37782 24985 24985 1 VGQALLQGNTER Unmodified 1284.6786 0.67861287 1040 Q06124 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 82.54 81.185 2 0.023634 1 55725 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.888 53.311 1623600 0 387710 0 316580 0 919310 8525 1040 8412 37783;37784;37785 24986 24986 0 VGREGIIPANYVQK Unmodified 1542.8518 0.85182621 912 P41240;E7EQW6;H3BUM9 CSK Tyrosine-protein kinase CSK yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 116.44 106.72 3 0.0017705 2 70026 20150910_Q1_SA_NiHu_Masterprac_group13_B 67.519 31.072 22222000 0 0 5544400 1348500 4905200 10424000 8526 912 8413 37786;37787;37788;37789 24987;24988 24987 2 VGRHVDAMNEYNK Unmodified 1531.7202 0.72016011 599 G5E9X0;Q96N46-2;Q96N46 TTC14 Tetratricopeptide repeat protein 14 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 54.825 48.007 3 0.0015473 5 34081 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.102 47.762 2141700 0 0 619890 224870 405540 891430 8527 599 8414 37790;37791;37792;37793 24989;24990;24991;24992;24993 24992 5 VGRITTTEDFK Unmodified 1265.6616 0.66156582 479 Q9BYW2;F2Z317 SETD2 Histone-lysine N-methyltransferase SETD2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 80.177 74.481 3 0.015226 1 51610 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.198 30.916 4026100 477050 827780 0 335490 663150 1722600 8528 479 8415 37794;37795;37796;37797;37798 24994 24994 1 VGRVSIYDSK Unmodified 1122.6033 0.60332266 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 71.263 61.488 2 0.00017172 2 49738 20150910_Q1_SA_NiHu_Masterprac_group13_C 107.11 38.328 59686000 6490800 0 18006000 389310 34800000 0 8529 352;968 8416 37799;37800;37801;37802 24995;24996 24995 2 VGRVSIYDSKR Unmodified 1278.7044 0.70443369 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 2 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 58.204 51.867 3 0.014558 3 42419 20150910_Q1_SA_NiHu_Masterprac_group15_C 75.819 58.608 8543900 0 1296500 1926700 1473700 1624600 2222500 8530 352;968 8417 37803;37804;37805;37806;37807 24997;24998;24999 24999 3 VGSHEQPSGATLQR Unmodified 1465.7274 0.72735397 1242 Q765P7 MTSS1L MTSS1-like protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 53.538 46.459 3 0.0054505 1 38565 20150910_Q1_SA_NiHu_Masterprac_group15_C 54.09 40.081 3447800 568820 687370 525630 680360 985610 0 8531 1242 8418 37808;37809;37810;37811;37812 25000 25000 1 VGSLDNVGHLPAGGAVK Unmodified 1589.8526 0.85255449 388 E7EVA0;P27816-6;P27816;P27816-2;P27816-4;E9PGM5;P27816-5;B9ZVR1;H0Y2V1;B4DSQ1;F8W9U4;H7C4C5 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 4 117.44 110.88 2;3 5.8909E-110 10 73902 20150910_Q1_SA_NiHu_Masterprac_group10_C 139.21 104.16 71191000 10628000 9205000 12244000 4747800 0 34366000 8532 388 8419 37813;37814;37815;37816;37817;37818;37819;37820;37821;37822;37823;37824 25001;25002;25003;25004;25005;25006;25007;25008;25009;25010 25010 10 VGSPATVTFQQNK Unmodified 1375.7096 0.70957864 1061 Q12830-4;Q12830-2;Q12830 BPTF Nucleosome-remodeling factor subunit BPTF yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 95.521 87.592 2 2.1196E-35 8 59521 20150910_Q1_SA_NiHu_Masterprac_group10_B 124.48 92.055 9881000 675380 2272000 1625400 1038500 1302600 2967100 8533 1061 8420 37825;37826;37827;37828;37829;37830 25011;25012;25013;25014;25015;25016;25017;25018 25018 8 VGSSSSESCAQDLPVLVGEEGEVKK Unmodified 2590.2432 0.24322634 547 Q99590-2;F8VXG7;Q99590;F8W028 SCAF11 Protein SCAF11 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 132.42 124.65 3 9.2302E-65 4 87663 20150910_Q1_SA_NiHu_Masterprac_group15_B 109.84 95.902 33523000 0 18289000 0 0 2071100 13163000 8534 547 8421 37831;37832;37833 25019;25020;25021;25022 25020 4 VGSVLQEGCGK Unmodified 1132.5547 0.55465791 407 E9PBJ5;P31040;E9PEF8 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 69.945 61.292 2 7.0993E-42 4 43086 20150910_Q1_SA_NiHu_Masterprac_group15_B 133.89 55.336 5155500 439410 403470 560150 0 1187400 2565100 8535 407 8422 37834;37835;37836;37837;37838 25023;25024;25025;25026 25024 4 VGTIDDDPEYRK Unmodified 1406.6678 0.66777341 1055 Q0VAK7;Q9BZI7-2;Q9BZI7 UPF3B Regulator of nonsense transcripts 3B yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 70.292 62.873 3 0.00092332 5 44011 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.387 64.15 12289000 2470300 1396500 2187000 1728300 1934800 2572200 8536 1055 8423 37839;37840;37841;37842;37843;37844;37845 25027;25028;25029;25030;25031 25028 5 VGTQFIR Unmodified 819.46029 0.46028724 1616 Q9UNQ0-2;Q9UNQ0 ABCG2 ATP-binding cassette sub-family G member 2 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 87.423 79.794 2 0.040637 1 54684 20150910_Q1_SA_NiHu_Masterprac_group13_B 79.116 44.863 7607000 575340 550140 1438500 851400 1749800 2441800 8537 1616 8424 37846;37847;37848;37849;37850;37851 25032 25032 1 VGTQFIRGVSGGERK Unmodified 1589.8638 0.86378788 1616 Q9UNQ0-2;Q9UNQ0 ABCG2 ATP-binding cassette sub-family G member 2 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 89.068 80.371 3 0.032681 1 54945 20150910_Q1_SA_NiHu_Masterprac_group13_B 46.88 28.676 13462000 0 0 2725900 2427600 3060500 5248300 8538 1616 8425 37852;37853;37854;37855 25033 25033 1 VGVEAKQPNSAIRK Unmodified 1495.8471 0.84707518 325 D6RD47;P62266;D6RIX0;D6R9I7 RPS23 40S ribosomal protein S23 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 54.328 47.527 3 0.01313 1 33330 20150910_Q1_SA_NiHu_Masterprac_group13_B 58.04 38.198 1491100 378290 0 0 545910 566920 0 8539 325 8426 37856;37857;37858 25034 25034 1 VGVGHAGEWAR Unmodified 1137.5679 0.56794021 594 G5E9E2;Q5J9I4;P29372-2;P29372 MPG DNA-3-methyladenine glycosylase yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1 76.884 69.264 2 1.2459E-12 4 48352 20150910_Q1_SA_NiHu_Masterprac_group10_C 113.67 90.148 38353000 3662600 5675900 5061500 1951800 9794400 12207000 8540 594 8427 37859;37860;37861;37862;37863;37864;37865 25035;25036;25037;25038 25038 4 VGVGTCGIADKPMTQYQDTSK Unmodified 2255.0562 0.05621761 751 O75940 SMNDC1 Survival of motor neuron-related-splicing factor 30 yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 114.81 106.73 3 2.3203E-06 4 73296 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.88 63.265 9428800 0 2589500 1099000 775130 2677200 2288100 8541 751 8428 37866;37867;37868;37869;37870 25039;25040;25041;25042 25039 4 VGVKEELLAVGK Unmodified 1240.7391 0.73908786 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 124.39 114.91 2;3 4.774E-193 13 81315 20150910_Q1_SA_NiHu_Masterprac_group13_C 176.99 137.41 419520000 129280000 22682000 165060000 21447000 53014000 28040000 8542 919;920 8429 37871;37872;37873;37874;37875;37876;37877;37878;37879;37880;37881;37882 25043;25044;25045;25046;25047;25048;25049;25050;25051;25052;25053;25054;25055 25046 13 VGVKEELLAVGKFTR Unmodified 1644.9563 0.95629128 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 132.93 132.93 4 1.5353E-08 1 85964 20150910_Q1_SA_NiHu_Masterprac_group13_B 97.767 84.619 9628100 0 0 0 9628100 0 0 8543 919;920 8430 37883 25056 25056 1 VGVKEELLAVGKLTQTSGETTHTHTEPTGDGK Unmodified 3319.6896 0.68957807 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 132.07 123.07 5 5.889E-06 2 84926 20150910_Q1_SA_NiHu_Masterprac_group13_B 45.985 38.064 56429000 0 0 39345000 17084000 0 0 8544 919;920 8431 37884;37885 25057;25058 25057 2 VGVKEEVLPVGK Unmodified 1252.7391 0.73908786 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 4 2 105.17 96.858 2;3 4.8283E-06 11 65844 20150910_Q1_SA_NiHu_Masterprac_group15_B 104.81 81.713 499510000 39208000 118000000 96968000 37933000 72996000 134410000 8545 919;920 8432 37886;37887;37888;37889;37890;37891;37892;37893;37894;37895;37896;37897;37898;37899 25059;25060;25061;25062;25063;25064;25065;25066;25067;25068;25069 25064 10 VGVKEEVLPVGKLTQTSGK Unmodified 1968.1255 0.12554145 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 1 1 1 1 126.92 117.78 3;4 6.0763E-81 4 76544 20150910_Q1_SA_NiHu_Masterprac_group10_C 125.59 114.78 160370000 100400000 4125600 48820000 5898100 0 1131900 8546 919;920 8433 37900;37901;37902;37903;37904;37905 25070;25071;25072;25073 25073 4 VGVLAASMEAK Unmodified 1074.5743 0.57433072 107 F8VQE1;Q9UHB6-2;B4DN52;Q9UHB6;Q9UHB6-4;F8VS07;Q9UHB6-3 LIMA1 LIM domain and actin-binding protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 110.64 101.84 2 0.0092847 2 69553 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.842 37.928 10807000 1361800 2057800 0 0 1633200 5754000 8547 107 8434 37906;37907;37908;37909 25074;25075 25074 2 VGVNGFGR Unmodified 804.42424 0.42423608 791 P04406;E7EU54 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 82.424 73.621 2 6.939E-05 3 56268 20150910_Q1_SA_NiHu_Masterprac_group15_C 114.78 75.965 18126000 2843600 2033600 2038100 3409200 7801500 0 8548 791 8435 37910;37911;37912;37913;37914 25076;25077;25078 25077 3 VGYELKDEIERK Unmodified 1477.7777 0.77765821 1342 Q8WWY3;Q8WWY3-2;E7ESA8;Q8WWY3-3 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 98.938 89.346 3 0.011793 1 60859 20150910_Q1_SA_NiHu_Masterprac_group10_C 67.879 47.773 6531700 3839100 0 0 0 1257100 1435500 8549 1342 8436 37915;37916;37917 25079 25079 1 VHAAADKHNSVEDSVTK Unmodified 1806.886 0.88603946 732 O60563 CCNT1 Cyclin-T1 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 39.718 35.607 3;4 0.0018133 4 24865 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.788 45.87 6189700 599000 1229600 239870 407050 666800 3047300 8550 732 8437 37918;37919;37920;37921;37922;37923;37924;37925 25080;25081;25082;25083 25082 4 VHELNEEIGK Unmodified 1166.5932 0.5931519 186 B7Z500;Q9Y383-2;Q9Y383;B7Z4Q3 LUC7L2;C7orf55 Putative RNA-binding protein Luc7-like 2;UPF0562 protein C7orf55 no no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 63.054 60.971 2 0.015835 1 42829 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.207 44.194 2365700 0 446490 0 0 0 1919300 8551 186 8438 37926;37927 25084 25084 1 VHIPNDDAQFDASHCDSDK Unmodified 2169.9022 0.90215981 1153 Q16576;E9PC52;Q16576-2;Q5JP01;C9J7L0 RBBP7 Histone-binding protein RBBP7 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 3 94.614 88.289 3;4 2.393E-26 7 60455 20150910_Q1_SA_NiHu_Masterprac_group15_B 102.84 101.48 32904000 0 13360000 6959500 0 0 12584000 8552 1153 8439 37928;37929;37930;37931;37932;37933;37934 25085;25086;25087;25088;25089;25090;25091 25086 4 VHIPNDDAQFDASHCDSDKGEFGGFGSVTGK Unmodified 3293.432 0.43198317 1153 Q16576;Q16576-2;Q5JP01 RBBP7 Histone-binding protein RBBP7 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 131.91 124.09 4;5 7.941E-90 9 86619 20150910_Q1_SA_NiHu_Masterprac_group15_B 108.19 108.19 402870000 5402200 22724000 77998000 40265000 1810500 254670000 8553 1153 8440 37935;37936;37937;37938;37939;37940;37941;37942 25092;25093;25094;25095;25096;25097;25098;25099;25100 25094 9 VHKECCHGDLLECADDR Unmodified 2112.8775 0.87754174 294 CON__P02769 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 71.35 64.476 3;4 0.0020961 8 52003 20150910_Q1_SA_NiHu_Masterprac_group13_C 55.815 39.642 9502000 0 2362700 1668100 1330300 1559500 2581400 + 8554 294 8441 37943;37944;37945;37946;37947;37948;37949;37950 25101;25102;25103;25104;25105;25106;25107;25108 25102 8 VHKECCHGDLLECADDRADLAK Unmodified 2611.1577 0.15773934 294 CON__P02769 yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 2 98.625 90.347 3;4;5 2.2705E-33 10 67917 20150910_Q1_SA_NiHu_Masterprac_group13_C 102.84 75.298 727980000 0 46372000 151650000 124890000 135710000 269350000 + 8555 294 8442 37951;37952;37953;37954;37955;37956;37957;37958;37959;37960 25109;25110;25111;25112;25113;25114;25115;25116;25117;25118 25111 10 VHLPTQPAADTYSEFHK Unmodified 1939.9428 0.94282606 1237 Q6W2J9;Q6W2J9-4;Q6W2J9-2;H7BYY2;Q6W2J9-3 BCOR BCL-6 corepressor yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 128.08 114.05 3 6.9715E-08 4 79788 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.38 82.382 8120200 3436900 0 1972500 0 613940 2096800 8556 1237 8443 37961;37962;37963;37964;37965 25119;25120;25121;25122 25120 4 VHPAMATAAGGCR Unmodified 1297.602 0.60195923 674;664 H7C561;H7C0N4 SF1 no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 51.053 45.129 3 0.00094644 5 32478 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.124 51.008 9461100 933880 1000300 978100 828110 2177700 3543100 8557 674;664 8444 37966;37967;37968;37969;37970;37971 25123;25124;25125;25126;25127 25124 5 VHSQGPHHVCELCNK Unmodified 1800.8148 0.81480555 219 C6G496;P56270;G5E927;I3L2Z5;F5H7A6;H3BQI4;H3BQS2;H3BQD6;I3L411;H3BPU3;I3L4Y2;I3L0M3;I3L0V8 MAZ Myc-associated zinc finger protein yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 39.854 35.02 4 0.0010829 4 24093 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.972 49.476 8966300 0 1423300 1395300 625180 2217400 3305100 8558 219 8445 37972;37973;37974;37975;37976 25128;25129;25130;25131 25129 4 VHTGEKPYECEECGK Unmodified 1821.7662 0.7661836 194 B7Z7H3;Q969J2;H7C1Y5;H7BY15 ZKSCAN4 Zinc finger protein with KRAB and SCAN domains 4 no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 43.003 37.848 3 0.0042889 1 26716 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.812 46.512 7756200 857880 1051800 1146200 705510 1312400 2682400 8559 194 8446 37977;37978;37979;37980;37981;37982 25132 25132 1 VHTGQRPFSCGICGK Unmodified 1702.8032 0.80317823 646 H3BS42;Q9H5H4;B7Z2Y7 ZNF768 Zinc finger protein 768 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 2 1 1 1 1 1 74.764 67.216 3 0.005303 3 47774 20150910_Q1_SA_NiHu_Masterprac_group10_C 52.821 39.674 9385700 1837200 707280 1524300 1309200 2238500 1769300 8560 646 8447 37983;37984;37985;37986;37987;37988;37989 25133;25134;25135 25135 3 VHVGDEDFVHLR Unmodified 1421.7052 0.70516197 786 P04080 CSTB Cystatin-B yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 1 1 1 120.94 112.95 3 2.8131E-50 3 77467 20150910_Q1_SA_NiHu_Masterprac_group15_B 132.17 110.12 11793000 1862200 1755000 3327000 1159900 0 3689200 8561 786 8448 37990;37991;37992;37993;37994;37995;37996 25136;25137;25138 25137 3 VHVPARPYRVLNNFISNQK Unmodified 2251.2338 0.23380354 919;920 P46013;F5H4V4;P46013-2;E7EN66 MKI67 Antigen KI-67 no no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 131.67 118.1 3 3.6343E-06 2 86534 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.311 60.473 112020000 0 0 10347000 0 1485000 100190000 8562 919;920 8449 37997;37998;37999 25139;25140 25140 2 VIACFDSLKGR Unmodified 1264.6598 0.65979168 263;764 Q9NR56-3;Q9NR56-4;E9PBW7;Q9NR56-6;C9JP00;Q9NR56-2;Q9NR56-5;Q9NR56;H7C4T5;O95205;Q5VZF2-3;Q5VZF2-2;Q5VZF2;B4E3F7 MBNL1;MBLL;MBNL2 Muscleblind-like protein 1;Muscleblind-like protein 2 no no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 113.32 104.3 3 0.010338 2 68781 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.73 36.022 10860000 1444600 318340 1188200 631340 2359800 4917700 8563 263;764 8450 38000;38001;38002;38003;38004;38005 25141;25142 25141 2 VIAGLYQR Unmodified 918.5287 0.52870115 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 96.241 88.312 2 0.0077396 6 60387 20150910_Q1_SA_NiHu_Masterprac_group15_B 104.45 60.64 50716000 4299900 12848000 2691000 2903800 7836200 20137000 8564 1012 8451 38006;38007;38008;38009;38010;38011 25143;25144;25145;25146;25147;25148 25145 6 VIAPNPAQLQGQR Unmodified 1390.7681 0.76809658 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 110.94 103.29 2 1.555E-09 1 70422 20150910_Q1_SA_NiHu_Masterprac_group15_B 105.46 81.389 7593400 0 1854600 1526900 0 0 4211900 8565 1344 8452 38012;38013;38014 25149 25149 1 VIAPNPAQLQGQRGPPKPGLVR Unmodified 2292.3179 0.31786752 1344 Q8WXI9 GATAD2B Transcriptional repressor p66-beta yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 128.8 123.84 3 0.038818 1 83612 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.418 35.58 1844800 0 0 0 0 0 1844800 8566 1344 8453 38015 25150 25150 1 VIAQLSECEK Unmodified 1175.5856 0.58562368 1362 Q92878-2;Q92878;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 85.122 77.544 2 0.0086316 3 53327 20150910_Q1_SA_NiHu_Masterprac_group10_B 80.706 59.334 8598400 860640 1479100 797790 433230 1595000 3432700 8567 1362 8454 38016;38017;38018;38019;38020;38021 25151;25152;25153 25153 3 VIAQLSECEKHKEK Unmodified 1697.8771 0.87705468 1362 Q92878-2;Q92878;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1 51.447 45.073 3;4 0.00012727 6 32430 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.856 54.411 14386000 0 4291500 1750700 1728800 2580400 4034900 8568 1362 8455 38022;38023;38024;38025;38026;38027;38028 25154;25155;25156;25157;25158;25159 25156 6 VIAQQVQLQQQQEQVR Unmodified 1922.0334 0.033372399 1029 Q01664 TFAP4 Transcription factor AP-4 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 2 1 2 110.01 99.847 2;3 0.0027041 3 68057 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.975 42.034 15882000 0 1682900 2082300 0 1760900 10356000 8569 1029 8456 38029;38030;38031;38032;38033;38034 25160;25161;25162 25160 2 VIAQQVQLQQQQEQVRLLHQEK Unmodified 2670.4565 0.45654585 1029 Q01664 TFAP4 Transcription factor AP-4 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 1 130 118.14 3;4 2.5144E-23 4 84822 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.882 83.645 290450000 0 43555000 36003000 0 18112000 192790000 8570 1029 8457 38035;38036;38037;38038;38039 25163;25164;25165;25166 25165 3 VICAEEPYICK Unmodified 1380.6418 0.64175835 129 F8W720;B4DUT7;P49915 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 114.65 106.13 2 0.0040233 3 71200 20150910_Q1_SA_NiHu_Masterprac_group10_C 79.201 46.947 8124800 2240400 2833600 1910100 1140700 0 0 8571 129 8458 38040;38041;38042;38043 25167;25168;25169 25169 3 VICLGSLASK Unmodified 1046.5794 0.57941609 1634 Q9Y2M0-2;Q9Y2M0;H3BQ24 FAN1 Fanconi-associated nuclease 1 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 128.96 123.65 2 0.0007944 2 78115 20150910_Q1_SA_NiHu_Masterprac_group10_C 105.4 54.051 39148000 16470000 3402400 0 2712700 0 16564000 8572 1634 8459 38044;38045;38046;38047 25170;25171 25171 2 VIDLTRNEATVETLTETK Unmodified 2032.0688 0.068814432 588 G3V529;Q9GZR7;F5H4J5;Q4V9L5;F5GYL3;F5H4V3 DDX24 ATP-dependent RNA helicase DDX24 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 133.02 133.02 3 1.6261E-58 1 86089 20150910_Q1_SA_NiHu_Masterprac_group13_B 121.51 102.11 9969800 0 0 0 9969800 0 0 8573 588 8460 38048 25172 25172 1 VIDQEMQAIGGQK Unmodified 1415.7079 0.70786408 1245 Q7L3T8 PARS2 Probable proline--tRNA ligase, mitochondrial yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 101.94 98.885 2 0.015794 1 67355 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.135 30.55 2592200 0 0 0 0 0 2592200 8574 1245 8461 38049 25173 25173 1 VIEEEWQQVDR Unmodified 1429.6838 0.68375782 913 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 123 113.54 2 5.2963E-55 6 80839 20150910_Q1_SA_NiHu_Masterprac_group13_C 138.45 117.2 39786000 7732900 8699200 6058400 1568600 2726100 13001000 8575 913 8462 38050;38051;38052;38053;38054;38055 25174;25175;25176;25177;25178;25179 25175 6 VIENPAEAQSAALEEGHAWRK Unmodified 2305.1451 0.14510769 1077 Q13322-3;Q13322-2;Q13322-4;Q13322 GRB10 Growth factor receptor-bound protein 10 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.77 125.8 4 0.0089468 1 85537 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.665 20.613 2878500 0 0 0 0 0 2878500 8576 1077 8463 38056 25180 25180 0 VIETPENDFK Unmodified 1190.5819 0.58191851 526 F5H727;Q9H0G5;H7BYM1 NSRP1 Nuclear speckle splicing regulatory protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 102.4 94.678 2 0.030044 1 64657 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.347 27.68 4105200 427950 0 0 719960 1551600 1405600 8577 526 8464 38057;38058;38059;38060 25181 25181 1 VIGANKNQEEEK Unmodified 1357.6838 0.68375782 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 29.174 21.805 3 0.0049072 1 17800 20150910_Q1_SA_NiHu_Masterprac_group13_C 64.64 30.879 1087800 0 0 1087800 0 0 0 8578 1639 8465 38061 25182 25182 1 VIGNGSFGVVYQAK Unmodified 1437.7616 0.76161421 946 P49841;P49841-2 GSK3B Glycogen synthase kinase-3 beta yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 131.89 131.59 2 3.0302E-55 3 84652 20150910_Q1_SA_NiHu_Masterprac_group10_B 128.21 100.53 22863000 0 18044000 0 4818700 0 0 8579 946 8466 38062;38063;38064 25183;25184;25185 25184 2 VIGQDSSEIHFKVK Unmodified 1585.8464 0.84640648 213 B8ZZJ0;B9A032;P63165;B8ZZN6 SUMO1 Small ubiquitin-related modifier 1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 105.91 98.825 3 1.526E-12 2 67528 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.39 82.214 8106200 1295900 2032900 1144200 823100 0 2810100 8580 213 8467 38065;38066;38067;38068;38069 25186;25187 25187 2 VIHSILNSPYAK Unmodified 1340.7452 0.74523587 866 P23258;Q9NRH3 TUBG1;TUBG2 Tubulin gamma-1 chain;Tubulin gamma-2 chain yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 2 2 117.29 107.07 2;3 0.0012803 2 73365 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.793 52.798 12085000 0 2754100 900210 0 3291300 5139900 8581 866 8468 38070;38071;38072;38073;38074;38075 25188;25189 25189 2 VIKGESCSENLQVK Unmodified 1589.8083 0.80830641 1154 Q16600 ZNF239 Zinc finger protein 239 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 73.548 64.734 3 0.0011277 1 45120 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.589 46.949 4700400 850190 786140 838250 0 777090 1448700 8582 1154 8469 38076;38077;38078;38079;38080 25190 25190 1 VILASPETSSAK Unmodified 1201.6554 0.65541781 256 C9JKS0;P49116;P49116-2 NR2C2 Nuclear receptor subfamily 2 group C member 2 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 90.085 80.76 2 0.0025962 3 55446 20150910_Q1_SA_NiHu_Masterprac_group10_B 73.951 42.665 8922100 0 1633200 1177000 0 2637800 3474100 8583 256 8470 38081;38082;38083;38084 25191;25192;25193 25193 3 VILCQLEVYQK Unmodified 1391.7483 0.74827234 535 Q96RL1;F8VQY2;Q96RL1-3;F2Z2T8 UIMC1 BRCA1-A complex subunit RAP80 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 133.2 132.6 2 1.0127E-86 1 86195 20150910_Q1_SA_NiHu_Masterprac_group10_B 152.67 122.1 33983000 0 33983000 0 0 0 0 8584 535 8471 38085 25194 25194 1 VILDYNTAHNK Unmodified 1286.6619 0.66190017 1105 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 81.996 74.636 2 0.0024929 2 56774 20150910_Q1_SA_NiHu_Masterprac_group15_C 87.184 64.543 5189200 0 741460 517600 252920 1949100 1728200 8585 1105 8472 38086;38087;38088;38089;38090 25195;25196 25196 2 VILGAHNEKVR Unmodified 1234.7146 0.71460444 295 CON__P06868 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 54.536 48.479 3 0.0057815 2 34580 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.221 12.154 2573500 0 336900 487970 333520 467460 947690 + 8586 295 8473 38091;38092;38093;38094;38095 25197;25198 25197 2 VIMPLGSK Unmodified 843.48881 0.48881017 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 109.19 97.509 2 0.034579 2 71863 20150910_Q1_SA_NiHu_Masterprac_group13_C 69.812 30.149 4063600 616150 0 1218300 772550 1456600 0 8587 1325 8474 38096;38097;38098;38099 25199;25200 25199 2 VINAAHSFYNGTTTLPISDEDRTPRK Unmodified 2902.4573 0.45733371 129 F8W720;B4DUT7;P49915 GMPS GMP synthase [glutamine-hydrolyzing] yes no 0 0 2 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 131.08 124.2 4;5 1.3218E-79 3 85820 20150910_Q1_SA_NiHu_Masterprac_group15_B 114.78 96.513 87506000 24749000 0 0 14643000 0 48114000 8588 129 8475 38100;38101;38102 25201;25202;25203 25202 3 VINEEYKIWK Unmodified 1320.7078 0.70778773 1153;1051 Q16576;E9PC52;Q16576-2;C9JAJ9;Q09028-3;Q09028;Q09028-2;E9PNS2;E9PIC4;E9PNS6 RBBP7;RBBP4 Histone-binding protein RBBP7;Histone-binding protein RBBP4 no no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 122.25 114.4 3 0.0089035 2 81084 20150910_Q1_SA_NiHu_Masterprac_group13_C 79.489 43.042 6964400 0 633410 4434500 0 0 1896500 8589 1153;1051 8476 38103;38104;38105 25204;25205 25204 2 VINLNDNTFTEK Unmodified 1406.7042 0.70415892 921 P46060;F8W7I9;H0Y4Q3 RANGAP1 Ran GTPase-activating protein 1 yes no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 127.82 121.99 2 7.8067E-12 4 84499 20150910_Q1_SA_NiHu_Masterprac_group15_B 107.65 86.292 22003000 0 3814000 0 1098000 2369600 14721000 8590 921 8477 38106;38107;38108;38109 25206;25207;25208;25209 25208 4 VIPELNGK Unmodified 868.50182 0.5018177 791 P04406;E7EUT5;E7EUT4 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 90.983 83.271 2 0.0015751 4 63434 20150910_Q1_SA_NiHu_Masterprac_group13_C 111.65 48.342 30016000 3750700 3272000 4476700 4543000 9347100 4626200 8591 791 8478 38110;38111;38112;38113;38114;38115 25210;25211;25212;25213 25210 4 VIPRLTHELPGIK Unmodified 1471.8875 0.88748343 667 H7C1J2;H7C1M5;Q9H147;F2Z2A4 DNTTIP1 Deoxynucleotidyltransferase terminal-interacting protein 1 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 129.96 128.1 3 9.4018E-06 2 85485 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.669 57.458 14698000 0 3918900 0 1841200 0 8937600 8592 667 8479 38116;38117;38118 25214;25215 25215 2 VIQAGMFDQK Unmodified 1135.5696 0.56957969 952;951 P51531-2;P51531;P51532-5;P51532-2;P51532-3;P51532-4;P51532;Q9HBD4;F5H0X5 SMARCA2;SMARCA4 Probable global transcription activator SNF2L2;Transcription activator BRG1 no no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 112.19 103.14 2 5.1129E-05 3 73504 20150910_Q1_SA_NiHu_Masterprac_group15_C 108.47 76.055 23208000 1259500 3792400 2631700 1760200 3990200 9774400 8593 951;952 8480 38119;38120;38121;38122;38123;38124 25216;25217;25218 25217 3 VIQENEHALQK Unmodified 1307.6834 0.68336389 419 E9PD53;Q9NTJ3;F5H0U7 SMC4 Structural maintenance of chromosomes protein;Structural maintenance of chromosomes protein 4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 1 1 56.963 49.392 2;3 9.3508E-13 2 35306 20150910_Q1_SA_NiHu_Masterprac_group15_B 115 76.251 1903100 0 310400 360070 0 365740 866910 8594 419 8481 38125;38126;38127;38128;38129 25219;25220 25219 2 VIQIATSSSTAK Unmodified 1204.6663 0.66631685 656 Q7L2E3-3;H7BXY3;Q7L2E3;Q7L2E3-2 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 79.641 72.129 2 0.0034305 4 56684 20150910_Q1_SA_NiHu_Masterprac_group13_C 70.089 70.089 7850300 1062500 897080 2711300 1117300 1010700 1051400 8595 656 8482 38130;38131;38132;38133;38134;38135 25221;25222;25223;25224 25221 4 VITDVYYVDGTEVERK Unmodified 1884.9469 0.94690838 1063 Q12888;Q12888-2;A6NNK5;F8VY86 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.31 125.35 3 1.1492E-37 2 85048 20150910_Q1_SA_NiHu_Masterprac_group15_B 114.21 98.45 13376000 0 0 0 0 0 13376000 8596 1063 8483 38136 25225;25226 25225 2 VIVDFAGSSKLR Unmodified 1290.7296 0.7295858 274 C9JZ40;Q7Z2E3-4;Q7Z2E3-5;Q7Z2E3-9;Q7Z2E3-10;Q7Z2E3-11;Q7Z2E3-7;Q7Z2E3;Q7Z2E3-6;Q7Z2E3-2;F8W6G5;Q7Z2E3-3;Q7Z2E3-8;H7BXV7 APTX Aprataxin yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 124.05 119.28 3 0.0088439 1 80867 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.301 27.442 2032700 0 0 0 0 0 2032700 8597 274 8484 38137 25227 25227 1 VIVQLVTNGK Unmodified 1069.6495 0.64954457 329 D6RH30;P19838;P19838-2;D6RC45 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 112.41 110.52 2 0.030524 1 72390 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.149 14.811 9831300 0 2036800 0 540730 0 7253700 8598 329 8485 38138;38139;38140 25228 25228 1 VKDPHYAEMEEK Unmodified 1474.6762 0.67622961 430 Q12873;E9PG89;Q12873-2;H7C2H0 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 56.036 48.466 3 0.0019081 2 34695 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.663 70.464 5605000 0 710940 1345200 0 357680 3191100 8599 430 8486 38141;38142;38143;38144 25229;25230 25230 2 VKEGMNIVEAMER Unmodified 1504.7378 0.737784 999 P62937;B4DM82;Q567Q0 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 131.87 122.87 3 2.3542E-14 3 78424 20150910_Q1_SA_NiHu_Masterprac_group10_C 102.63 60.155 25840000 0 0 19566000 6274200 0 0 8600 999 8487 38145;38146;38147 25231;25232;25233 25233 3 VKEVSESRNLEK Unmodified 1416.7573 0.75725712 535 Q96RL1;F8VQY2;Q96RL1-2;D6RC40;D6RCQ3;D6RCF3;Q96RL1-5;D6RDZ5;D6R9M3 UIMC1 BRCA1-A complex subunit RAP80 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 45.455 34.902 3 0.0067818 1 28449 20150910_Q1_SA_NiHu_Masterprac_group13_C 93.839 54.66 1649100 0 0 1479800 0 169290 0 8601 535 8488 38148;38149 25234 25234 0 VKGTNIQENEYVK Unmodified 1520.7835 0.78347187 1443 Q9BRX2 PELO Protein pelota homolog yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 2 2 2 75.831 69.054 2;3 0.0007816 7 53484 20150910_Q1_SA_NiHu_Masterprac_group15_C 92.039 56.382 55093000 5391000 12397000 3847400 3266700 9549800 20641000 8602 1443 8489 38150;38151;38152;38153;38154;38155;38156;38157;38158;38159;38160;38161 25235;25236;25237;25238;25239;25240;25241 25239 7 VKILFNK Unmodified 860.54837 0.54837396 882 P26599;P26599-2;P26599-3;A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 95.495 86.596 2 8.1083E-31 3 59126 20150910_Q1_SA_NiHu_Masterprac_group15_B 137.83 45.931 23594000 0 0 4865800 2432200 4899100 11397000 8603 882 8490 38162;38163;38164;38165 25242;25243;25244 25243 3 VKNSTEFSQMEK Unmodified 1426.6762 0.67622961 27 F5H101;Q76FK4-2;Q76FK4-4;A6NJK7;Q76FK4;F8WE42;Q76FK4-3;F5GWN9 NOL8 Nucleolar protein 8 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 68.486 61.275 3 0.022874 1 42972 20150910_Q1_SA_NiHu_Masterprac_group15_B 50.897 16.124 7258400 828800 1060800 1423700 1252700 1043200 1649200 8604 27 8491 38166;38167;38168;38169;38170;38171 25245 25245 1 VKPAPDETSFSEALLK Unmodified 1730.9091 0.90906631 1064 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 132.62 123.39 2;3 8.5769E-07 2 81792 20150910_Q1_SA_NiHu_Masterprac_group15_C 90.259 66.033 19960000 0 8010200 0 0 11950000 0 8605 1064 8492 38172;38173 25246;25247 25246 2 VKPAPDETSFSEALLKR Unmodified 1887.0102 0.010177341 1064 Q12905 ILF2 Interleukin enhancer-binding factor 2 yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 131.43 119.31 4 1.3764E-21 3 83684 20150910_Q1_SA_NiHu_Masterprac_group10_B 104.16 89.23 27516000 0 19220000 6800000 0 1495400 0 8606 1064 8493 38174;38175;38176 25248;25249;25250 25250 3 VKPLHPNATST Unmodified 1163.6299 0.62987176 1369 Q96B01-2;Q96B01;Q96B01-3;B4DUS5 RAD51AP1 RAD51-associated protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 39.487 37.178 2 0.027389 1 26244 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.224 47.056 547840 0 547840 0 0 0 0 8607 1369 8494 38177 25251 25251 1 VKPTELCAGHLIGGTDSCQGDSGGPLVCFEK Unmodified 3288.5213 0.52133223 295 CON__P06868 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 133.49 128.53 4 0.035396 1 88575 20150910_Q1_SA_NiHu_Masterprac_group15_B 34.267 26.922 13319000 0 0 0 0 0 13319000 + 8608 295 8495 38178 25252 25252 0 VKTEQQESDSVQCMPVAK Unmodified 2062.9663 0.96633997 1417 Q96RE7 NACC1 Nucleus accumbens-associated protein 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 82.894 77.008 3 0.0016293 2 52996 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.246 34.886 4346100 367490 1071600 1269000 512570 0 1125500 8609 1417 8496 38179;38180;38181;38182;38183 25253;25254 25254 2 VKTIFPHTAGSNK Unmodified 1398.7619 0.76194857 1595 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 68.635 60.262 3 0.0015651 4 42259 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.163 71.028 16090000 0 1943300 1676200 1447200 7074900 3948800 8610 1595 8497 38184;38185;38186;38187;38188;38189 25255;25256;25257;25258 25256 4 VLAGETLSVNDPPDVLDRQK Unmodified 2165.1328 0.13281167 243 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;C9JFV5;Q12906;G5E9M5 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 132.8 114.88 3 1.957E-102 3 85472 20150910_Q1_SA_NiHu_Masterprac_group10_B 128.82 105.19 224780000 0 0 45850000 0 178930000 0 8611 243 8498 38190;38191;38192 25259;25260;25261 25261 3 VLANNSLSFEK Unmodified 1220.6401 0.6401021 600 G5E9Z8;H0YH39;O76094 SRP72 Signal recognition particle subunit SRP72 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 116.96 107.77 2 0.014835 1 73807 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.265 27.231 5177000 2049900 0 825610 987730 0 1313700 8612 600 8499 38193;38194;38195;38196 25262 25262 1 VLANPGNSQVAR Unmodified 1224.6575 0.65748349 1119 Q14974 KPNB1 Importin subunit beta-1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 65.822 60.297 2 0.010262 3 48709 20150910_Q1_SA_NiHu_Masterprac_group13_C 58.754 34.665 9913600 1852800 3229100 1164900 391200 0 3275600 8613 1119 8500 38197;38198;38199;38200;38201 25263;25264;25265 25263 2 VLATQPGPGR Unmodified 994.55598 0.55597854 414 Q5JTH9-2;E9PCK7;Q5JTH9;F5H456 RRP12 RRP12-like protein yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 55.071 48.862 2 0.026777 2 39957 20150910_Q1_SA_NiHu_Masterprac_group15_C 58.699 28.012 10046000 969880 1365400 619200 615130 2934500 3542000 8614 414 8501 38202;38203;38204;38205;38206;38207 25266;25267 25266 2 VLATVTKPVGGDKNGGTR Unmodified 1768.9795 0.97954591 551 F8W181;Q02878;F8VZ45;F8VZA3;F8VWR1 RPL6 60S ribosomal protein L6 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 63.522 57.22 3 0.031709 1 46131 20150910_Q1_SA_NiHu_Masterprac_group15_C 41.695 33.129 1421500 0 483610 0 0 476130 461750 8615 551 8502 38208;38209;38210 25268 25268 1 VLCAVSGPR Unmodified 957.50659 0.5065855 1185 Q5RKV6 EXOSC6 Exosome complex component MTR3 yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 75.699 66.65 2 0.013763 3 46601 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.148 43.853 6012800 0 1110300 1273700 0 1090800 2537900 8616 1185 8503 38211;38212;38213;38214 25269;25270;25271 25270 3 VLCFDSTTAPVANTQGPNHK Unmodified 2156.0321 0.03205177 618 H0YET3;Q14207 NPAT Protein NPAT yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 125.83 115.65 3 0.0024285 4 79213 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.288 40.004 4625100 3251100 0 0 0 0 1374000 8617 618 8504 38215;38216 25272;25273;25274;25275 25273 4 VLCLHLK Unmodified 881.51569 0.51569363 628 Q6JHV3;H0YMI4;Q9Y6I4;B3KMX7;H0YLB7;H0YKU8;F5H1A6;B4DWJ6 USP3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 3 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 2 1 1 1 1 107.03 96.922 2 0.014943 3 64672 20150910_Q1_SA_NiHu_Masterprac_group10_C 89.903 43.239 23749000 4369300 0 1942100 2327400 2029300 13080000 8618 628 8505 38217;38218;38219;38220;38221;38222 25276;25277;25278 25278 3 VLCPSNSSQRVPLQAQK Unmodified 1910.9996 0.99962943 698 O14965 AURKA Aurora kinase A yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 93.843 85.947 3 0.0021076 1 63720 20150910_Q1_SA_NiHu_Masterprac_group15_C 55.415 38.414 70669000 4861200 15315000 9112700 3217400 5276400 32887000 8619 698 8506 38223;38224;38225;38226;38227;38228 25279 25279 1 VLDKGKPEDVMPSVK Unmodified 1640.8807 0.88074307 644 H3BRL3;O14562;B3KW52 UBFD1 Ubiquitin domain-containing protein UBFD1 yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 107.93 91.083 3 0.029768 1 66736 20150910_Q1_SA_NiHu_Masterprac_group15_C 47.301 23.076 978090 0 0 0 0 978090 0 8620 644 8507 38229 25280 25280 1 VLDLCAAPGGK Unmodified 1099.5696 0.56957969 1495 Q9H649 NSUN3 Putative methyltransferase NSUN3 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 113.26 100.39 2 0.013586 1 73664 20150910_Q1_SA_NiHu_Masterprac_group13_C 60.641 30.898 4917000 261810 0 1336600 0 492840 2825700 8621 1495 8508 38230;38231;38232;38233 25281 25281 1 VLDLEPKAVTDQTVSK Unmodified 1741.9462 0.9461801 904 P38432 COIL Coilin yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 1 1 127.5 119.44 2;3 3.4343E-97 6 77116 20150910_Q1_SA_NiHu_Masterprac_group10_C 138.98 125.12 98356000 11815000 0 12200000 17765000 15919000 40658000 8622 904 8509 38234;38235;38236;38237;38238;38239;38240 25282;25283;25284;25285;25286;25287 25287 5 VLDLEPKAVTDQTVSKK Unmodified 1870.0411 0.041143118 904 P38432 COIL Coilin yes yes 0 0 2 By MS/MS By matching By matching By MS/MS By matching By matching 2 1 2 2 2 118.01 108.01 3;4 0.0060075 2 70773 20150910_Q1_SA_NiHu_Masterprac_group13_B 45.883 35.534 14453000 4325100 0 2030000 1545200 2023000 4529800 8623 904 8510 38241;38242;38243;38244;38245;38246;38247;38248;38249 25288;25289 25288 2 VLECDIIK Unmodified 988.52632 0.52631789 1457 Q9BWF3;E9PB51;Q9BQ04;E7EQS3;Q9BWF3-3;D6R9K7;Q9BWF3-2;E9PLB0;E9PM61 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 111.12 103.06 2 0.008442 3 68235 20150910_Q1_SA_NiHu_Masterprac_group10_B 93.429 59.34 30628000 0 6570200 7214100 1855500 1000600 13988000 8624 1457 8511 38250;38251;38252;38253;38254 25290;25291;25292 25292 3 VLEEANQAINPK Unmodified 1324.6987 0.69867961 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 1 3 1 94.655 84.201 2 2.6392E-79 9 57866 20150910_Q1_SA_NiHu_Masterprac_group10_C 144.28 102.8 1124500000 183150000 165600000 130050000 118620000 180030000 347040000 8625 1361;629 8512 38255;38256;38257;38258;38259;38260;38261;38262;38263;38264;38265 25293;25294;25295;25296;25297;25298;25299;25300;25301 25300 8 VLEEMESR Unmodified 991.46445 0.46444592 575 G3V1D4;Q9NUP9 LIN7C Protein lin-7 homolog C yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 66.144 64.061 2 0.014419 1 44672 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.819 15.154 2752700 0 651160 0 0 0 2101600 8626 575 8513 38266;38267 25302 25302 1 VLEGNEQFINAAK Unmodified 1431.7358 0.73579339 66 B1AN99;F8W7P3;P35030-3;P35030-2;P35030-4;P35030 PRSS3 Trypsin-3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 114.86 113 2 0.0022327 1 77095 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.023 41.671 4410400 0 1603700 0 1669800 0 1136900 8627 66 8514 38268;38269;38270 25303 25303 1 VLELDNVK Unmodified 928.52295 0.52294707 81 F5H3X9;B4DDF7;P30153;E9PH38 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 107.49 97.807 2 0.0074874 2 65042 20150910_Q1_SA_NiHu_Masterprac_group10_B 94.114 24.516 6728000 498840 3008000 1198200 874960 1148100 0 8628 81 8515 38271;38272;38273;38274;38275 25304;25305 25305 2 VLELTAENER Unmodified 1172.6037 0.60371659 851 P17676 CEBPB CCAAT/enhancer-binding protein beta yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 99.118 91.072 2 0.0002704 9 62210 20150910_Q1_SA_NiHu_Masterprac_group15_B 106.62 60.617 27571000 5208600 3013800 2170700 4372100 8120200 4685400 8629 851 8516 38276;38277;38278;38279;38280;38281;38282 25306;25307;25308;25309;25310;25311;25312;25313;25314 25311 9 VLELTAENERLQK Unmodified 1541.8413 0.8413211 851 P17676 CEBPB CCAAT/enhancer-binding protein beta yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 1 1 2 2 1 112.49 102.01 2;3 1.5277E-08 3 67364 20150910_Q1_SA_NiHu_Masterprac_group13_B 95.183 41.178 13614000 2182300 1112500 2499500 4420900 1356400 2042300 8630 851 8517 38283;38284;38285;38286;38287;38288;38289;38290;38291 25315;25316;25317 25315 3 VLELTAENERLQKK Unmodified 1669.9363 0.93628412 851 P17676 CEBPB CCAAT/enhancer-binding protein beta yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 96.441 87.318 3 0.003456 4 59475 20150910_Q1_SA_NiHu_Masterprac_group13_B 73.273 22.139 8419400 3078900 612180 1054700 2399800 1273800 0 8631 851 8518 38292;38293;38294;38295;38296 25318;25319;25320;25321 25318 4 VLENAEGAR Unmodified 957.48796 0.48795855 187 B7Z4V2;P38646;D6RJI2;D6RA73 HSPA9 Stress-70 protein, mitochondrial yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 48.106 37.329 2 0.012883 1 30324 20150910_Q1_SA_NiHu_Masterprac_group13_C 80.688 38.09 1649000 0 0 1649000 0 0 0 8632 187 8519 38297 25322 25322 1 VLEQLTGQTPVFSK Unmodified 1545.8403 0.84025847 998 P62913;P62913-2;Q5VVC9;Q5VVC8 RPL11 60S ribosomal protein L11 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 133.25 124.32 2 0 3 79428 20150910_Q1_SA_NiHu_Masterprac_group10_C 201.72 140.61 83494000 0 0 0 41928000 41566000 0 8633 998 8520 38298;38299;38300 25323;25324;25325 25325 3 VLEQLTGQTPVFSKAR Unmodified 1772.9785 0.97848328 998 P62913;P62913-2;Q5VVC9;Q5VVC8 RPL11 60S ribosomal protein L11 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 131.83 131.83 3 6.2486E-07 1 84841 20150910_Q1_SA_NiHu_Masterprac_group13_B 91.592 43.819 42715000 0 0 0 42715000 0 0 8634 998 8521 38301 25326 25326 1 VLETFLAK Unmodified 919.53787 0.53786886 1105 Q14258 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 130.59 121.09 2 1.0926E-24 6 78423 20150910_Q1_SA_NiHu_Masterprac_group10_C 132.08 46.873 48147000 9047400 3208600 6503300 2034400 16461000 10893000 8635 1105 8522 38302;38303;38304;38305;38306;38307 25327;25328;25329;25330;25331;25332 25332 6 VLFGPEAPK Unmodified 956.53312 0.53311783 951 P51531-2;P51531 SMARCA2 Probable global transcription activator SNF2L2 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 118.84 106.98 2 0.016105 2 71263 20150910_Q1_SA_NiHu_Masterprac_group10_C 74.173 45.024 6620700 702170 0 0 0 558140 5360400 8636 951 8523 38308;38309;38310 25333;25334 25334 2 VLFSSNGGVVK Unmodified 1105.6132 0.61315906 882 P26599;P26599-2;P26599-3;A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 116.73 107.16 2 0.0026696 5 72960 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.344 44.896 146850000 0 32481000 14212000 7342800 30631000 62178000 8637 882 8524 38311;38312;38313;38314;38315;38316 25335;25336;25337;25338;25339 25337 5 VLFSSNGGVVKGFK Unmodified 1437.798 0.79799972 882 P26599;P26599-2;P26599-3;A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 1 131.59 121.21 2;3 3.6416E-124 10 80868 20150910_Q1_SA_NiHu_Masterprac_group15_C 153.81 116.63 604680000 37249000 409380000 62736000 22222000 20870000 52221000 8638 882 8525 38317;38318;38319;38320;38321;38322;38323;38324;38325 25340;25341;25342;25343;25344;25345;25346;25347;25348;25349 25346 10 VLFTCFK Unmodified 913.47316 0.47316011 1035;655 P11388;H7BXX8;P11388-2;P11388-3;P11388-4;C9J5P2;H7BXH5;Q02880-2;Q02880;E9PCY5 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta;DNA topoisomerase 2 no no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 132.69 129.91 2 5.5919E-21 2 88059 20150910_Q1_SA_NiHu_Masterprac_group15_B 132.96 73.351 62856000 0 12258000 0 0 0 50598000 8639 655;1035 8526 38326;38327 25350;25351 25350 2 VLFTGVVDAR Unmodified 1075.6026 0.60259438 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7;Q14676-4 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 133.23 128.27 2 0.018537 1 88344 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.672 25.322 11796000 0 0 0 0 0 11796000 8640 1109 8527 38328 25352 25352 1 VLGCPEALTGSYK Unmodified 1393.6912 0.69115139 1099 Q14181 POLA2 DNA polymerase alpha subunit B yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 129.17 124.21 2 0.0022327 1 83883 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.023 48.428 1329600 0 0 0 0 0 1329600 8641 1099 8528 38329 25353 25353 1 VLGIQVDTDGSGR Unmodified 1315.6732 0.67319314 892 P33992;B1AHB1;E7EQY5 MCM5 DNA replication licensing factor MCM5 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 120.08 115.42 2 0.01162 1 78843 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.869 36.667 1209000 0 0 0 0 0 1209000 8642 892 8529 38330 25354 25354 1 VLGLAHSTTGPQESK Unmodified 1523.7944 0.79437091 1117 Q14865-2;Q14865 ARID5B AT-rich interactive domain-containing protein 5B yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 80.596 73.217 3 0.00038164 3 57603 20150910_Q1_SA_NiHu_Masterprac_group13_C 71.279 51.993 11866000 0 2851200 2891100 1635600 1225100 3263500 8643 1117 8530 38331;38332;38333;38334;38335 25355;25356;25357 25355 3 VLGSSTSATNSTSVSSR Unmodified 1639.8013 0.80130678 1124 Q15004;H0YMA4;A6NNU5 KIAA0101 PCNA-associated factor yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 68.583 61.236 2 2.3161E-73 9 42700 20150910_Q1_SA_NiHu_Masterprac_group15_B 127.83 127.83 89336000 8429500 16905000 16109000 3848000 9267000 34778000 8644 1124 8531 38336;38337;38338;38339;38340;38341;38342 25358;25359;25360;25361;25362;25363;25364;25365;25366 25360 9 VLGSSTSATNSTSVSSRK Unmodified 1767.8963 0.8962698 1124 Q15004;H0YMA4;A6NNU5 KIAA0101 PCNA-associated factor yes no 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 56.89 50.464 3 0.00093291 3 41562 20150910_Q1_SA_NiHu_Masterprac_group13_C 64.454 64.454 97835000 1264000 23975000 20637000 5503800 9889100 36567000 8645 1124 8532 38343;38344;38345;38346;38347;38348 25367;25368;25369 25368 3 VLGSSTSATNSTSVSSRKAENK Unmodified 2210.1139 0.11386714 1124 Q15004;H0YMA4 KIAA0101 PCNA-associated factor yes no 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 52.725 46.667 3;4 1.469E-10 5 38532 20150910_Q1_SA_NiHu_Masterprac_group13_C 88.486 69.324 36707000 1655800 7508000 12204000 1888000 3729400 9721800 8646 1124 8533 38349;38350;38351;38352;38353;38354;38355;38356;38357;38358;38359;38360 25370;25371;25372;25373;25374 25371 5 VLGTEAVQDPTK Unmodified 1256.6612 0.66123147 389 E7EVD1;O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 92.101 83.052 2 0.016021 1 61770 20150910_Q1_SA_NiHu_Masterprac_group15_C 54.023 12.914 2289000 0 0 0 0 1021100 1267800 8647 389 8534 38361;38362 25375 25375 1 VLIIGSGGREHTLAWK Unmodified 1735.9733 0.97333832 239 C9JBJ1;C9JTV6;F8WD69;P22102-2;P22102;C9JZG2;C9JKQ7 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 131.69 120.33 3 0.0026056 2 86576 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.569 35.297 44591000 0 0 0 0 3240700 41350000 8648 239 8535 38363;38364 25376;25377 25376 2 VLISDSLDPCCRK Unmodified 1561.7592 0.75924773 711 O43175 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 118.24 112.93 3 0.006568 2 74739 20150910_Q1_SA_NiHu_Masterprac_group10_C 53.034 43.114 14789000 2881400 1860300 0 1054900 0 8992500 8649 711 8536 38365;38366;38367;38368 25378;25379 25379 2 VLKDRELCSGPSK Unmodified 1487.7766 0.77661235 594 G5E9E2;Q5J9I4;P29372-2;P29372;A2IDA3 MPG DNA-3-methyladenine glycosylase yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 50.706 44.782 3 0.0069671 5 37143 20150910_Q1_SA_NiHu_Masterprac_group13_C 71.085 45.89 81062000 5810400 12075000 14958000 7163600 15369000 25685000 8650 594 8537 38369;38370;38371;38372;38373;38374 25380;25381;25382;25383;25384 25381 5 VLKEKEQQQQQQQQQQQK Unmodified 2281.1775 0.17747045 411 E9PC67;Q5STZ8 ABCF1 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 2 1 20.64 20.125 3;4 0.0033917 2 13425 20150910_Q1_SA_NiHu_Masterprac_group13_B 48.899 34.166 3316500 0 314620 0 2531500 0 470390 8651 411 8538 38375;38376;38377;38378 25385;25386 25385 2 VLKGNTAEGCVHETQEKQK Unmodified 2155.0692 0.069165558 682 I3L1L3;Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 42.954 38.58 4 0.0028193 1 27096 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.343 34.321 16189000 2849500 0 2450200 2410000 0 8479100 8652 682 8539 38379;38380;38381;38382 25387 25387 1 VLKQVHPDTGISSK Unmodified 1507.8358 0.83584179 119 Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;O60814;Q5QNW6-2;B4DR52;Q99880;P57053;Q96A08 HIST1H2BM;HIST1H2BN;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST1H2BL;H2BFS;HIST1H2BA Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B;Histone H2B type 1-L;Histone H2B type F-S;Histone H2B type 1-A no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 3 63.385 56.305 2;3 3.133E-08 9 41222 20150910_Q1_SA_NiHu_Masterprac_group10_C 99.941 74.599 162540000 31819000 28181000 15811000 14920000 52431000 19377000 8653 119 8540 38383;38384;38385;38386;38387;38388;38389;38390;38391;38392;38393;38394;38395;38396 25388;25389;25390;25391;25392;25393;25394;25395;25396 25396 9 VLLAEEGIAPLSSAGPGKEEK Unmodified 2094.1209 0.12085 1046 Q08050-2;Q08050;H0YG99;Q08050-3 FOXM1 Forkhead box protein M1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.83 132.23 3 1.9668E-09 1 85819 20150910_Q1_SA_NiHu_Masterprac_group10_B 86.179 57.153 14685000 0 14685000 0 0 0 0 8654 1046 8541 38397 25397 25397 1 VLLALHDRAPQLK Unmodified 1472.8827 0.8827324 530 F5H8F7;Q9UBL3-3;Q9UBL3;Q9UBL3-2 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 117.91 113.35 3 0.0027802 1 77309 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.64 54.496 1881300 0 0 0 0 0 1881300 8655 530 8542 38398 25398 25398 1 VLLGETGKEKLPR Unmodified 1438.8508 0.85076357 989 P62280 RPS11 40S ribosomal protein S11 yes yes 0 0 2 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 92.683 86.687 3 0.0063963 2 58772 20150910_Q1_SA_NiHu_Masterprac_group10_C 72.29 53.324 4318000 780500 713120 0 405940 1195200 1223200 8656 989 8543 38399;38400;38401;38402;38403 25399;25400 25400 2 VLLGVGDPK Unmodified 896.53312 0.53311783 692 O00567;Q5JXT2 NOP56 Nucleolar protein 56 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 106.68 99.372 2 0.029695 1 65927 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.654 23.875 27350000 0 3185200 0 0 10979000 13186000 8657 692 8544 38404;38405;38406 25401 25401 1 VLMQNQKGKGEAGNSDSMCLR Unmodified 2322.0879 0.087868864 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 84.402 77.003 4 0.0023237 1 58274 20150910_Q1_SA_NiHu_Masterprac_group15_C 48.616 37.415 15700000 0 2477200 5200600 2173700 2130700 3717600 8658 919;920 8545 38407;38408;38409;38410;38411 25402 25402 1 VLMTQQPRPVL Unmodified 1280.7275 0.72747731 1527 Q9NPE3 NOP10 H/ACA ribonucleoprotein complex subunit 3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 132.24 122.73 2 0 6 78789 20150910_Q1_SA_NiHu_Masterprac_group10_C 199.68 183.06 163470000 72269000 15073000 21126000 15095000 13293000 26614000 8659 1527 8546 38412;38413;38414;38415;38416;38417 25403;25404;25405;25406;25407;25408 25408 6 VLMTQQPRPVL Oxidation (M) 1296.7224 0.72239194 1527 Q9NPE3 NOP10 H/ACA ribonucleoprotein complex subunit 3 yes yes 0 1 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 118.13 109.14 2 0.0054438 2 71490 20150910_Q1_SA_NiHu_Masterprac_group13_B 73.841 55.31 0 0 0 0 0 0 0 8660 1527 8546 38418;38419 25409;25410 25409 173 2 VLNMMPEEK Unmodified 1089.5199 0.5198523 1440 Q9BRJ7 NUDT16L1 Protein syndesmos yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 110.62 101.77 2 2.1578E-29 5 74331 20150910_Q1_SA_NiHu_Masterprac_group13_C 134.05 97.734 47226000 2549900 8005400 8170800 3705800 2099300 22695000 8661 1440 8547 38420;38421;38422;38423;38424;38425 25411;25412;25413;25414;25415 25412 5 VLNMMPEEK 2 Oxidation (M) 1121.5097 0.50968155 1440 Q9BRJ7 NUDT16L1 Protein syndesmos yes yes 0 2 0 By matching By matching By matching By matching By matching By MS/MS 1 42.052 41.198 2 0.015558 1 29335 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.711 22.835 0 0 0 0 0 0 0 8662 1440 8547 38426 25416 25416 167;168 1 VLNNFISNQK Unmodified 1175.6299 0.62987176 919;920 P46013;F5H4V4;P46013-2;E7EN66 MKI67 Antigen KI-67 no no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 108.27 101.14 2 0.0027611 3 68927 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.813 54.163 9647500 467500 1538400 1623700 691330 0 5326600 8663 919;920 8548 38427;38428;38429;38430;38431 25417;25418;25419 25418 3 VLPIKPADVEEPAVPQTPR Unmodified 2055.1364 0.13644049 607 H0Y3K4;Q96EV2 RBM33 RNA-binding protein 33 yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 132.38 124.23 3 0.0010816 2 84771 20150910_Q1_SA_NiHu_Masterprac_group10_B 60.334 44.701 34764000 13052000 21712000 0 0 0 0 8664 607 8549 38432;38433 25420;25421 25420 2 VLPITVPK Unmodified 865.56369 0.56368968 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 132.5 116.82 2 0.015568 1 78191 20150910_Q1_SA_NiHu_Masterprac_group10_C 84.498 60.543 17121000 17121000 0 0 0 0 0 8665 1611 8550 38434 25422 25422 1 VLPITVPKSPAFALKNR Unmodified 1850.1142 0.1141889 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 133.27 124.32 3;4 2.1108E-110 9 86224 20150910_Q1_SA_NiHu_Masterprac_group13_B 141.65 140.98 535760000 55378000 178350000 88390000 42815000 32820000 138000000 8666 1611 8551 38435;38436;38437;38438;38439;38440;38441;38442;38443;38444;38445 25423;25424;25425;25426;25427;25428;25429;25430;25431 25423 8 VLPVPQKAVPYPQR Unmodified 1590.9246 0.92459722 290 CON__P02666 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 1 126.87 114.83 2;3 3.5395E-12 8 76276 20150910_Q1_SA_NiHu_Masterprac_group10_C 101.89 76.415 127820000 51768000 14608000 31948000 8461400 10584000 10453000 + 8667 290 8552 38446;38447;38448;38449;38450;38451;38452;38453;38454 25432;25433;25434;25435;25436;25437;25438;25439 25439 8 VLQDMGLPTGAEGR Unmodified 1442.7188 0.71876312 243 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;C9JFV5;Q12906;G5E9M5;B4DFG4 ILF3 Interleukin enhancer-binding factor 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 130.89 125.93 2 0.0011074 1 85670 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.781 42.877 12381000 0 0 0 0 0 12381000 8668 243 8553 38455 25440 25440 1 VLQSEFCNAVR Unmodified 1321.6449 0.6448699 575 G3V1D4;Q9NUP9 LIN7C Protein lin-7 homolog C yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 115.53 107.81 2 0.0058585 1 73744 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.942 46.432 3196900 0 1304600 591150 0 0 1301200 8669 575 8554 38456;38457;38458 25441 25441 1 VLQVQAQVQSQTQPRIPSTDTQVQPK Unmodified 2903.5465 0.54648307 203 B7ZAS8;Q9ULV3-3;H0Y5D5;Q9BTG3;Q9ULV3-4;Q9ULV3-2;Q5SYW2;Q9ULV3;F5H2X7;Q96KB7 CIZ1 Cip1-interacting zinc finger protein yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 130.43 130.13 3 0.0015517 1 83271 20150910_Q1_SA_NiHu_Masterprac_group10_B 49.66 38.85 8171500 0 5597200 0 2574300 0 0 8670 203 8555 38459;38460 25442 25442 1 VLRDNIQGITKPAIR Unmodified 1692.9999 0.99988743 994 P62805 HIST1H4A Histone H4 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 2 114.79 105.07 3;4 0.00051115 3 72101 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.651 46.359 10216000 1010700 843690 1238800 0 1118900 6004100 8671 994 8556 38461;38462;38463;38464;38465;38466 25443;25444;25445 25444 3 VLRLANNPDIVK Unmodified 1350.7983 0.79833407 1624 Q9UQ84-4;Q9UQ84 EXO1 Exonuclease 1 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 115.75 106.6 3 0.0019852 2 73111 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.216 37.86 14695000 1212900 3020400 2383900 846780 1162300 6069100 8672 1624 8557 38467;38468;38469;38470;38471;38472 25446;25447 25447 2 VLRLCTVNSVEEK Unmodified 1545.8185 0.81847717 952;951 P51531-2;P51531;P51532-5;P51532-2;P51532-3;P51532-4;P51532;Q9HBD4;F5H0X5 SMARCA2;SMARCA4 Probable global transcription activator SNF2L2;Transcription activator BRG1 no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 103.83 100.67 3 0.010639 1 68621 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.105 21.317 2645600 0 0 0 0 0 2645600 8673 951;952 8558 38473 25448 25448 1 VLRLHYANCK Unmodified 1272.6761 0.67611045 218 B9ZVN9;O95602 POLR1A DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA1 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 69.486 61.439 3 0.009224 3 48407 20150910_Q1_SA_NiHu_Masterprac_group15_C 76.943 42.737 6278400 0 0 1188600 688440 2020300 2381100 8674 218 8559 38474;38475;38476;38477 25449;25450;25451 25451 3 VLSAEQGSYFVR Unmodified 1354.6881 0.68811492 1413 Q96Q06-2;Q96Q06 PLIN4 Perilipin-4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 126.74 123.95 2 0.00069736 2 83797 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.623 70.842 3682900 0 849780 0 0 0 2833100 8675 1413 8560 38478;38479 25452;25453 25452 2 VLSASEVAALSSPASSAPHSGGK Unmodified 2109.0702 0.070211415 653 H7BXG5;Q9HCK8-2;Q9HCK8 CHD8 Chromodomain-helicase-DNA-binding protein 8 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 130.41 130.11 3 7.4642E-07 2 83203 20150910_Q1_SA_NiHu_Masterprac_group10_B 60.347 24.875 10917000 0 7655300 0 3261800 0 0 8676 653 8561 38480;38481 25454;25455 25455 1 VLSHVNSGCQLLPQHQVPAY Unmodified 2246.1266 0.12662086 849 P17535 JUND Transcription factor jun-D yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 131.93 124.09 3 6.7505E-66 2 84473 20150910_Q1_SA_NiHu_Masterprac_group13_B 122.14 99.704 40256000 16212000 0 0 24044000 0 0 8677 849 8562 38482;38483 25456;25457 25456 2 VLSLQDKSDDLTCK Unmodified 1620.8029 0.80288668 1245 Q7L3T8 PARS2 Probable proline--tRNA ligase, mitochondrial yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 114.52 96.83 2;3 0.0024157 2 71491 20150910_Q1_SA_NiHu_Masterprac_group13_C 64.104 27.159 1867700 0 0 1867700 0 0 0 8678 1245 8563 38484;38485 25458;25459 25458 2 VLSQSTPGTPSK Unmodified 1200.635 0.63501672 1223 Q6MZP7-3;Q6MZP7 LIN54 Protein lin-54 homolog yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 58.254 51.762 2 0.021411 1 37101 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.338 34.161 3617400 660720 343710 125920 354440 1064500 1068100 8679 1223 8564 38486;38487;38488;38489;38490;38491 25460 25460 0 VLSSLKPAAPSPATAATTAAAASTAASSTASSASK Unmodified 3102.6045 0.60445146 1447 Q9BTC0 DIDO1 Death-inducer obliterator 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.02 131.41 3 3.9067E-90 1 84853 20150910_Q1_SA_NiHu_Masterprac_group10_B 106.55 93.732 37287000 0 37287000 0 0 0 0 8680 1447 8565 38492 25461 25461 1 VLSTTKPFEYETPEMEK Unmodified 2027.9762 0.9761596 1155 Q16666-3;Q16666-2;Q16666;H3BLV7;E7EPR3;H3BR88;H3BR65 IFI16 Gamma-interferon-inducible protein 16 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 131.49 120.21 3 2.1894E-08 5 86226 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.454 78.827 58249000 12283000 0 12094000 17901000 4717300 11253000 8681 1155 8566 38493;38494;38495;38496;38497 25462;25463;25464;25465;25466 25463 5 VLTANSNPSSPSAAK Unmodified 1442.7365 0.73652168 1547 Q9NV56 MRGBP MRG/MORF4L-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 62.304 55.504 2 0.00048602 6 45044 20150910_Q1_SA_NiHu_Masterprac_group13_C 71.98 33.68 41453000 6191400 5740400 4690600 5693600 6588100 12549000 8682 1547 8567 38498;38499;38500;38501;38502;38503 25467;25468;25469;25470;25471;25472 25468 5 VLTELLEQER Unmodified 1228.6663 0.66631685 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.61 132 2 2.1629E-115 1 85550 20150910_Q1_SA_NiHu_Masterprac_group10_B 160.77 118.05 24778000 0 24778000 0 0 0 0 8683 383;1082 8568 38504 25473 25473 1 VLTELLEQERK Unmodified 1356.7613 0.76127986 1082;383 Q13428-7;E7ETY2;Q13428-6;Q13428-3;Q13428;Q13428-4;E9PHK9;Q13428-8;Q13428-2 TCOF1 Treacle protein no no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 3 2 2 3 2 125.98 116.54 2;3 0 11 76665 20150910_Q1_SA_NiHu_Masterprac_group10_C 225.93 177.66 151990000 68337000 9683600 29782000 5354100 14679000 24153000 8684 383;1082 8569 38505;38506;38507;38508;38509;38510;38511;38512;38513;38514;38515;38516;38517;38518 25474;25475;25476;25477;25478;25479;25480;25481;25482;25483;25484 25484 11 VLTSDRTLQK Unmodified 1159.6561 0.65608651 1081 Q13416 ORC2 Origin recognition complex subunit 2 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 53.778 47.801 2 0.008383 3 34173 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.149 54.375 5760200 0 654710 2377100 219430 573020 1936000 8685 1081 8570 38519;38520;38521;38522;38523 25485;25486;25487 25486 3 VLTWDGK Unmodified 817.4334 0.43340378 1576 Q9P275;Q9P275-2;E9PEW0 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 99.725 90.07 2 0.0064305 4 66071 20150910_Q1_SA_NiHu_Masterprac_group15_C 89.369 56.012 28429000 6377400 4005200 3123200 0 4685900 10237000 8686 1576 8571 38524;38525;38526;38527;38528 25488;25489;25490;25491 25489 4 VLVATNVAAR Unmodified 1012.6029 0.60292873 515 F5H3H6;Q9BQ39 DDX50 ATP-dependent RNA helicase DDX50 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 91.476 84.606 2 0.0093011 2 57952 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.282 36.224 4103400 0 762020 0 0 1317200 2024200 8687 515 8572 38529;38530;38531 25492;25493 25492 2 VLVDQTTGLSR Unmodified 1187.651 0.65100113 1146 Q15717 ELAVL1 ELAV-like protein 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 101.03 91.609 2 9.5016E-43 6 68462 20150910_Q1_SA_NiHu_Masterprac_group13_C 136.5 76.661 99357000 9937400 21164000 7859200 7207300 18079000 35111000 8688 1146 8573 38532;38533;38534;38535;38536;38537;38538 25494;25495;25496;25497;25498;25499 25495 6 VLVLDTDYK Unmodified 1064.5754 0.57537657 292 CON__P02754 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 124.17 122.32 2 0.013763 1 78518 20150910_Q1_SA_NiHu_Masterprac_group10_B 79.148 67.555 42640000 0 17486000 0 3494300 0 21659000 + 8689 292 8574 38539;38540;38541 25500 25500 1 VLVLDTDYKK Unmodified 1192.6703 0.67033959 292 CON__P02754 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 105.71 97.161 2 0.031996 3 64623 20150910_Q1_SA_NiHu_Masterprac_group10_B 85.533 64.745 58933000 5991400 9172700 3786100 5820900 7850800 26311000 + 8690 292 8575 38542;38543;38544;38545;38546;38547 25501;25502;25503 25502 3 VLVPGIPGHHAAIKPAPPQTEQVESK Unmodified 2699.4759 0.47588431 1130 Q15061 WDR43 WD repeat-containing protein 43 yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 1 1 1 126.76 115.93 4;5 5.1021E-28 6 75756 20150910_Q1_SA_NiHu_Masterprac_group10_C 91.238 85.652 23318000 17446000 0 3548200 620820 0 1703000 8691 1130 8576 38548;38549;38550;38551;38552 25504;25505;25506;25507;25508;25509 25509 6 VMEEEGLKDEEK Unmodified 1434.6548 0.65482546 1132 Q15208 STK38 Serine/threonine-protein kinase 38 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 1 1 2 65.367 58.499 2;3 0.0015302 5 41544 20150910_Q1_SA_NiHu_Masterprac_group10_B 90.913 68.584 8711700 551340 1441900 2574200 601180 841330 2701700 8692 1132 8577 38553;38554;38555;38556;38557;38558;38559;38560;38561 25510;25511;25512;25513;25514 25514 5 VMEGTVAAQDEFYR Unmodified 1614.7348 0.73480712 912 P41240;E7EQW6 CSK Tyrosine-protein kinase CSK yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 128.64 125.85 2 1.4854E-12 2 85104 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.43 37.958 6035800 0 373280 0 0 0 5662500 8693 912 8578 38562;38563 25515;25516 25515 2 VMEIVDADEK Unmodified 1147.5431 0.54309017 1653 Q9Y5B9;F5H063 SUPT16H FACT complex subunit SPT16 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 95.016 92.759 2 0.0089156 1 63367 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.288 77.288 1694100 0 0 0 0 0 1694100 8694 1653 8579 38564 25517 25517 1 VMEQQSNLQPEAK Unmodified 1500.7242 0.72424243 351 F5H7K2;Q8IWI9;E7ENI0;Q8IWI9-2;H3BU53 MGA MAX gene-associated protein yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 68.73 65.646 2 0.0056704 4 45497 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.345 40.564 2248600 473140 373770 0 492030 0 909700 8695 351 8580 38565;38566;38567;38568 25518;25519;25520;25521 25519 4 VMEYENRIR Unmodified 1208.5972 0.59719142 467 Q9BPX6-2;E9PQV6;Q9BPX6;H9KVB8;Q9BPX6-3;F6XEV2 MICU1 Calcium uptake protein 1, mitochondrial yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 86.552 69.961 3 0.0067053 1 55642 20150910_Q1_SA_NiHu_Masterprac_group13_C 91.318 50.966 637110 0 0 637110 0 0 0 8696 467 8581 38569 25522 25522 1 VMGTFSTVTSTVK Unmodified 1356.6959 0.69590241 449 E9PJS4;P08240 SRPR Signal recognition particle receptor subunit alpha yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 127.45 125.59 2 5.2443E-10 2 85096 20150910_Q1_SA_NiHu_Masterprac_group15_B 106.54 88.948 10941000 0 204160 0 322690 0 10414000 8697 449 8582 38570;38571;38572 25523;25524 25523 2 VMHSSPSSPSSDGKQK Oxidation (M) 1673.7679 0.76789816 83 B4DTR3;Q8NA37;H7C428;F5H2A3;Q6ZN50;B4DKE4;B4DFA8;Q0VF99;Q969R2 OSBP2 Oxysterol-binding protein;Oxysterol-binding protein 2 yes no 0 1 1 By matching By MS/MS By matching By matching By matching By matching 1 1 69.616 60.491 3 0.023595 1 42840 20150910_Q1_SA_NiHu_Masterprac_group10_B 47.774 21.242 11560000 0 407990 0 0 11152000 0 8698 83 8583 38573;38574 25525 25525 11 0 VMPTPTNQFKIPK Unmodified 1499.817 0.8170206 1564 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 130.98 121.48 3 0.0016839 5 85822 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.392 54.077 59855000 11466000 6815000 11777000 4890600 2295200 22611000 8699 1564 8584 38575;38576;38577;38578;38579;38580 25526;25527;25528;25529;25530 25527 5 VMQQQQQTTQQQLPQK Unmodified 1940.9738 0.97380861 1138 Q15459;F5H048 SF3A1 Splicing factor 3A subunit 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 72.579 63.253 3 0.0079868 1 44479 20150910_Q1_SA_NiHu_Masterprac_group10_B 45.614 32.443 1917700 0 716390 0 0 1201300 0 8700 1138 8585 38581;38582 25531 25531 1 VMQTDESNKETANLQER Unmodified 1991.9218 0.92183262 1325 Q8NFC6;H0Y9Y2 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 72.394 65.049 3 0.0040054 1 52495 20150910_Q1_SA_NiHu_Masterprac_group13_C 49.343 38.845 11957000 1955600 1543700 2403100 1738400 1608700 2707800 8701 1325 8586 38583;38584;38585;38586;38587;38588 25532 25532 1 VMSNLVEHNGVLESEAGQPQALGSSGTCSSLK Oxidation (M) 3301.5555 0.55546913 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 1 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 131.21 130.9 3 2.4913E-32 2 83934 20150910_Q1_SA_NiHu_Masterprac_group10_B 81.28 68.067 57930000 0 50791000 0 7139000 0 0 8702 1111 8587 38589;38590 25533;25534 25534 136 2 VMSNLVEHNGVLESEAGQPQALGSSGTCSSLK Unmodified 3285.5606 0.56055451 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 132.49 127.18 3 1.1585E-227 4 87573 20150910_Q1_SA_NiHu_Masterprac_group15_B 146.34 132.34 207240000 51498000 39614000 0 54591000 0 61534000 8703 1111 8587 38591;38592;38593;38594 25535;25536;25537;25538 25536 4 VMTHVSNGCQLLLGVKGHAF Oxidation (M) 2183.098 0.097963266 848 P17275 JUNB Transcription factor jun-B yes yes 0 1 1 By matching By matching By matching By MS/MS By matching By matching 1 132.45 132.45 4 0.0047107 1 85486 20150910_Q1_SA_NiHu_Masterprac_group13_B 58.427 44.065 7117500 0 0 0 7117500 0 0 8704 848 8588 38595 25539 25539 90 1 VMTHVSNGCQLLLGVKGHAF Unmodified 2167.103 0.10304864 848 P17275 JUNB Transcription factor jun-B yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 132.93 132.93 4 0.00058053 1 85996 20150910_Q1_SA_NiHu_Masterprac_group13_B 57.936 41.655 5917100 0 0 0 5917100 0 0 8705 848 8588 38596 25540 25540 1 VMVAPISGSVTTGTK Unmodified 1446.7752 0.77521537 1061 Q12830-4;Q12830-2;Q12830 BPTF Nucleosome-remodeling factor subunit BPTF yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 119.68 116.95 2 0.0059771 1 79394 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.771 37.169 2550800 0 901210 0 0 0 1649600 8706 1061 8589 38597;38598 25541 25541 1 VMYKGLVPEDK Unmodified 1277.669 0.66895938 644 H3BRL3;O14562;B3KW52;H3BUM8 UBFD1 Ubiquitin domain-containing protein UBFD1 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 103.97 96.074 2;3 0.0043325 6 64286 20150910_Q1_SA_NiHu_Masterprac_group13_B 82.505 54.121 26558000 0 2627900 3083700 5241000 2548000 13057000 8707 644 8590 38599;38600;38601;38602;38603;38604 25542;25543;25544;25545;25546;25547 25544 6 VNCSFYFK Unmodified 1063.4797 0.47970205 1024 Q01081-3;Q8WU68-3;Q8WU68-2;Q8WU68;Q01081-2;Q01081 U2AF1;U2AF1L4 Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit yes no 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 124.32 114.19 2 0.012699 3 77854 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.37 71.763 5481300 1625800 0 0 0 0 3855500 8708 1024 8591 38605;38606 25548;25549;25550 25548 3 VNGASVVMVQPSK Unmodified 1314.6966 0.69657112 568 H0Y5I5;F8WCX2;Q8N1G0-2;Q8N1G0 ZNF687 Zinc finger protein 687 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 96.874 94.317 2 2.2058E-05 1 64466 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.631 73.919 2341100 0 0 0 0 0 2341100 8709 568 8592 38607 25551 25551 1 VNGSTTAICATGLR Unmodified 1419.714 0.71401209 628 Q6JHV3;H0YMI4;Q9Y6I4;B3KMX7;H0YLB7;H0YKU8;F5H1A6;H0YLG0 USP3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 99.015 96.257 2 2.444E-14 1 65780 20150910_Q1_SA_NiHu_Masterprac_group15_B 99.927 72.672 0 0 0 0 0 0 0 8710 628 8593 38608 25552 25552 1 VNIVPVIAK Unmodified 951.6117 0.6117025 172 C9J2Q4;H7C2Y0;B5MCX3;Q15019;Q15019-2;H7C310 SEPT2 Septin-2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 132.44 127.47 2 0.020024 1 87413 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.812 13.378 7112500 0 0 0 0 0 7112500 8711 172 8594 38609 25553 25553 1 VNNVNGNQVGHLK Unmodified 1391.727 0.72696004 1107 Q14527;E7ESN4;F5H3D6 HLTF Helicase-like transcription factor yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 2 2 58.997 51.878 2;3 7.2469E-06 8 37131 20150910_Q1_SA_NiHu_Masterprac_group10_B 99.752 80.652 31916000 968070 5915000 4823200 788240 2473000 16948000 8712 1107 8595 38610;38611;38612;38613;38614;38615;38616;38617;38618;38619;38620 25554;25555;25556;25557;25558;25559;25560;25561 25561 8 VNNVNGNQVGHLKK Unmodified 1519.8219 0.82192306 1107 Q14527;E7ESN4;F5H3D6 HLTF Helicase-like transcription factor yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 46.09 41.21 3 0.020542 1 33593 20150910_Q1_SA_NiHu_Masterprac_group13_C 39.394 23.637 1708800 0 588280 293870 0 0 826650 8713 1107 8596 38621;38622;38623 25562 25562 1 VNPDLQVEVKPSIR Unmodified 1592.8886 0.88860564 1403 Q96KR1;B5MEH6 ZFR Zinc finger RNA-binding protein yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 1 1 122.92 120.23 2;3 4.4139E-29 6 76607 20150910_Q1_SA_NiHu_Masterprac_group10_C 110.51 74.51 19914000 0 3478700 0 0 0 16435000 8714 1403 8597 38624;38625;38626;38627 25563;25564;25565;25566;25567;25568 25567 6 VNPHSLPDPEVNEQSSSK Unmodified 1962.9283 0.9282982 1428 Q99575;E5RK39 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 94.947 87.018 3 3.75E-28 6 64240 20150910_Q1_SA_NiHu_Masterprac_group15_C 99.813 99.813 17627000 2576500 2312900 2408800 1363100 3980800 4985000 8715 1428 8598 38628;38629;38630;38631;38632;38633 25569;25570;25571;25572;25573;25574 25573 5 VNQCVIGTAQANRK Unmodified 1557.8046 0.80455844 1456 Q9BW19 KIFC1 Kinesin-like protein KIFC1 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 63.966 57.005 3 1.7871E-124 3 46518 20150910_Q1_SA_NiHu_Masterprac_group13_C 152.38 152.38 53708000 3308300 10744000 10817000 1877200 7488300 19474000 8716 1456 8599 38634;38635;38636;38637;38638;38639 25575;25576;25577 25575 3 VNQTQPEDTSGQQKPHPGER Unmodified 2232.0519 0.051935589 1211 Q5VYV7 SLX4IP Protein SLX4IP yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 40.922 36.375 4 0.023008 2 25520 20150910_Q1_SA_NiHu_Masterprac_group15_B 36.214 25.387 2858900 0 721800 590990 0 0 1546100 8717 1211 8600 38640;38641;38642 25578;25579 25579 2 VNSLAPGPISGTEGLRR Unmodified 1722.9377 0.9376811 1172 Q4VXZ8;Q9NUI1;Q9NUI1-3 DECR2 Peroxisomal 2,4-dienoyl-CoA reductase yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 129.14 113.45 3 0.013283 1 74972 20150910_Q1_SA_NiHu_Masterprac_group10_C 38.661 23.468 1670400 1670400 0 0 0 0 0 8718 1172 8601 38643 25580 25580 1 VNTLIRPDGEK Unmodified 1240.6776 0.67755023 45 P62750;H7BY10;A8MXA8;A8MUS3 RPL23A 60S ribosomal protein L23a yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 2 1 73.729 66.334 2;3 1.5247E-09 3 51778 20150910_Q1_SA_NiHu_Masterprac_group15_C 110.98 44.707 8174300 1284300 1351500 1246700 913640 2211900 1166200 8719 45 8602 38644;38645;38646;38647;38648;38649;38650 25581;25582;25583 25583 3 VPPPPPIAR Unmodified 942.56509 0.56508666 68 G3V576;G3V4W0;B4DY08;G3V4C1;P07910-2;B2R603;G3V2Q1;P07910;P07910-3;G3V555;G3V5V7;G3V575;G8JL89;G3V2D6;P07910-4 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 91.132 84.289 2 0.010501 1 57624 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.498 53.811 2618700 584530 0 0 136230 596280 1301700 8720 68 8603 38651;38652;38653;38654 25584 25584 1 VPQVSTPTLVEVSR Unmodified 1510.8355 0.83550744 294;293 CON__P02769;P02768;CON__P02768-1;E7ESU5;H0YA55;D6RHD5;B7WNR0;P02768-2;C9JKR2;Q8IUK7 ALB Serum albumin no no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 132.48 131.87 2 1.1816E-29 1 85366 20150910_Q1_SA_NiHu_Masterprac_group10_B 114.64 79.743 12798000 0 12798000 0 0 0 0 + 8721 294;293 8604 38655 25585 25585 1 VQAGDVITIDKATGK Unmodified 1514.8304 0.83042206 1627 Q9Y230;B3KQ59 RUVBL2 RuvB-like 2 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 1 1 2 2 110.32 100.68 2;3 6.7601E-06 3 68514 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.719 41.713 16577000 2427900 2155000 603920 249260 3251600 7889500 8722 1627 8605 38656;38657;38658;38659;38660;38661;38662;38663;38664 25586;25587;25588 25587 2 VQAINVSSRFEEEIK Unmodified 1747.9105 0.9104633 1374 Q96C19 EFHD2 EF-hand domain-containing protein D2 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.66 131.05 3 0.0032385 1 84522 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.434 19.134 12391000 0 12391000 0 0 0 0 8723 1374 8606 38665 25589 25589 1 VQALEEANNDLENK Unmodified 1585.7584 0.75837933 899 P35527;CON__P35527 KRT9 Keratin, type I cytoskeletal 9 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 107.47 96.776 2 5.327E-20 2 71359 20150910_Q1_SA_NiHu_Masterprac_group13_C 109.1 85.706 14673000 765630 9821000 4086200 0 0 0 + 8724 899 8607 38666;38667;38668 25590;25591 25590 1 VQALNTVNQSK Unmodified 1200.6463 0.64625011 199 Q5TCZ1-2;F5GZJ6;F5GZ35;B7Z9C6;H0Y507;Q5TCZ1-3;Q5TCZ1 SH3PXD2A SH3 and PX domain-containing protein 2A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 62.048 55.813 2 0.039251 1 39407 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.568 11.241 1001400 0 154800 0 0 252260 594300 8725 199 8608 38669;38670;38671 25592 25592 1 VQAQAEQGQQELK Unmodified 1455.7318 0.73177065 1456 Q9BW19 KIFC1 Kinesin-like protein KIFC1 yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 60.507 50.497 2 2.7789E-09 2 36275 20150910_Q1_SA_NiHu_Masterprac_group10_B 104.17 104.17 2386200 0 1305200 512660 0 568310 0 8726 1456 8609 38672;38673;38674 25593;25594 25594 2 VQENSAYICSR Unmodified 1325.6034 0.60339901 1648 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 71.523 64.344 2 0.0039728 3 45105 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.492 56.93 6774900 0 771970 796080 651190 1301100 3254500 8727 1648 8610 38675;38676;38677;38678;38679 25595;25596;25597 25597 3 VQENSAYICSRR Unmodified 1481.7045 0.70451004 1648 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 61.826 55.228 3 0.0062737 2 44550 20150910_Q1_SA_NiHu_Masterprac_group15_C 57.225 40.753 10804000 0 814550 862420 660860 3528500 4937500 8728 1648 8611 38680;38681;38682;38683;38684 25598;25599 25599 2 VQESTKGPDEAKIK Unmodified 1528.8097 0.80968662 715 O43390;O43390-2;E7ETM7;Q2L7G6 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 44.355 39.049 3 0.003454 2 32802 20150910_Q1_SA_NiHu_Masterprac_group15_C 75.102 39.328 9922700 1210300 2309000 1271900 643500 2032100 2455900 8729 715 8612 38685;38686;38687;38688;38689;38690 25600;25601 25601 2 VQHVIHYQVPR Unmodified 1374.7521 0.75205258 588 G3V529;Q9GZR7;F5H4J5;Q4V9L5;F5GYL3;F5H4V3 DDX24 ATP-dependent RNA helicase DDX24 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 82.614 75.469 3 1.2072E-05 4 52388 20150910_Q1_SA_NiHu_Masterprac_group10_B 105.17 85.135 30727000 3265900 4466400 0 0 14306000 8689000 8730 588 8613 38691;38692;38693;38694 25602;25603;25604;25605 25603 4 VQIFEYNENTRK Unmodified 1539.7682 0.76815616 1380 Q96EE3;Q96EE3-1 SEH1L Nucleoporin SEH1 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 107.71 99.727 3 0.00093703 3 67930 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.834 54.302 7913400 0 1100500 1172300 714540 1282500 3643500 8731 1380 8614 38695;38696;38697;38698;38699 25606;25607;25608 25606 3 VQISPDSGGLPER Unmodified 1353.6888 0.6888432 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 109.38 100.55 2 0.001732 3 67636 20150910_Q1_SA_NiHu_Masterprac_group10_C 81.239 62.273 210460000 19058000 249240 20515000 18801000 30616000 121220000 8732 1366 8615 38700;38701;38702;38703;38704;38705 25609;25610;25611 25611 3 VQISPDSGGLPERSVSLTGAPESVQK Unmodified 2637.361 0.36097371 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 132.63 120.26 3 1.4257E-79 7 84853 20150910_Q1_SA_NiHu_Masterprac_group13_B 115.01 85.403 1728500000 341740000 0 439520000 273180000 46264000 627800000 8733 1366 8616 38706;38707;38708;38709;38710;38711 25612;25613;25614;25615;25616;25617;25618 25612 7 VQISPDSGGLPERSVSLTGAPESVQKAK Unmodified 2836.4931 0.49305051 1366 Q92945-2;Q92945;E7EP96 KHSRP Far upstream element-binding protein 2 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 3 2 131.86 121.16 3;4 2.3218E-92 15 83760 20150910_Q1_SA_NiHu_Masterprac_group13_B 114.75 114.75 7183200000 513580000 4613400000 709320000 559240000 81165000 706510000 8734 1366 8617 38712;38713;38714;38715;38716;38717;38718;38719;38720;38721;38722;38723;38724;38725 25619;25620;25621;25622;25623;25624;25625;25626;25627;25628;25629;25630;25631;25632;25633 25619 15 VQMTSPSSTGSPMFK Unmodified 1583.7324 0.73236428 531 P49790;F6QR24;Q4LE47 NUP153;NUP153 variant protein Nuclear pore complex protein Nup153 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 130.27 113.13 2 0.00050129 3 81027 20150910_Q1_SA_NiHu_Masterprac_group13_C 83.692 48.731 7624400 3279700 0 3511000 0 833750 0 8735 531 8618 38726;38727;38728 25634;25635;25636 25634 3 VQQSSESSTSSPSQHEATPGAR Unmodified 2257.0207 0.02069504 97 B4DLG2;O75152;E9PQ61;E9PBY7 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 45.54 40.15 3 0.011088 5 33761 20150910_Q1_SA_NiHu_Masterprac_group15_C 37.884 20.127 3664000 464060 587020 564870 323910 746410 977750 8736 97 8619 38729;38730;38731;38732;38733;38734 25637;25638;25639;25640;25641 25640 5 VQRGECQTTIQGQAR Unmodified 1730.8482 0.84821417 540 H0YII3;Q9UIF9-2;Q9UIF9-3;F8VU39;Q9UIF9 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 46.536 41.723 3 0.00086263 1 29753 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.24 51.874 4017900 595660 0 0 860940 1111400 1449900 8737 540 8620 38735;38736;38737;38738 25642 25642 1 VQSNTTSELSRGHLSK Unmodified 1742.8911 0.89112484 1122 Q14CA3;B4DYJ6;G5E9G6;C9JLD7 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS 3 1 1 1 1 62.243 56.22 3;4 0.009291 3 40155 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.992 31.428 11177000 3871300 1696700 2384800 1939700 0 1284600 8738 1122 8621 38739;38740;38741;38742;38743;38744;38745 25643;25644;25645 25643 3 VQTAVTMKGVTK Unmodified 1261.7064 0.70640752 541 F8VUA2;Q9HD42;F5H875 CHMP1A Charged multivesicular body protein 1a yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 1 2 2 2 2 75.906 68.015 2;3 5.748E-05 8 47868 20150910_Q1_SA_NiHu_Masterprac_group10_C 99.732 0 106570000 11436000 11868000 14317000 9702000 25366000 33886000 8739 541 8622 38746;38747;38748;38749;38750;38751;38752;38753;38754;38755;38756;38757 25646;25647;25648;25649;25650;25651;25652;25653 25651 8 VQVEYKGETK Unmodified 1179.6136 0.61355299 824 P11142;E9PKE3;P11142-2;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 48.867 44.405 2 0.024163 1 36319 20150910_Q1_SA_NiHu_Masterprac_group13_C 76.228 52.198 4987300 347420 1212400 2834400 320080 0 272920 8740 824 8623 38758;38759;38760;38761;38762 25654 25654 1 VQVKEEPSAVK Unmodified 1212.6714 0.67140222 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 2 2 53.243 46.642 2;3 1.7036E-69 11 33827 20150910_Q1_SA_NiHu_Masterprac_group15_B 147.28 87.35 149630000 12053000 20578000 32223000 5952100 10836000 67992000 8741 919;920 8624 38763;38764;38765;38766;38767;38768;38769;38770;38771;38772;38773;38774 25655;25656;25657;25658;25659;25660;25661;25662;25663;25664;25665 25659 11 VQVLDNQNVSNGCVSK Unmodified 1759.8523 0.85229649 878 P26367-2 PAX6 Paired box protein Pax-6 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 95.474 87.894 2 2.2983E-18 3 60163 20150910_Q1_SA_NiHu_Masterprac_group15_B 105.02 84.215 15042000 0 4040300 4267200 734640 682120 5317900 8742 878 8625 38775;38776;38777;38778;38779 25666;25667;25668 25668 3 VQVQDVVLK Unmodified 1026.6073 0.6073454 1302 Q8N5C6 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 118.03 108.69 2 4.0861E-29 6 71495 20150910_Q1_SA_NiHu_Masterprac_group10_B 131.5 93.787 37068000 5448700 6408100 5461700 2677700 4396600 12675000 8743 1302 8626 38780;38781;38782;38783;38784;38785 25669;25670;25671;25672;25673;25674 25673 6 VRAQPSGPSQPHVCGFCGK Unmodified 2067.9731 0.9730971 1408 Q96MX3 ZNF48 Zinc finger protein 48 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 89.555 78.51 3 0.007825 1 53717 20150910_Q1_SA_NiHu_Masterprac_group13_B 43.208 25.313 4805200 0 0 882360 1533900 2388900 0 8744 1408 8627 38786;38787;38788 25675 25675 1 VRDPWGNWCDAK Unmodified 1502.6725 0.67248163 1207 Q5VVJ2;Q5VVJ2-2 MYSM1 Histone H2A deubiquitinase MYSM1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 129.66 124.69 3 0.0020005 1 84335 20150910_Q1_SA_NiHu_Masterprac_group15_B 87.719 64.602 4176000 0 0 0 0 0 4176000 8745 1207 8628 38789 25676 25676 1 VREEEIEVDSR Unmodified 1359.663 0.66302238 1120 Q14978;Q14978-3;Q14978-2 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 70.929 63.601 3 0.00091419 5 51173 20150910_Q1_SA_NiHu_Masterprac_group13_C 93.839 56.226 51866000 7162000 5548100 1245500 982330 24341000 12587000 8746 1120 8629 38790;38791;38792;38793;38794;38795 25677;25678;25679;25680;25681 25677 5 VREEEIEVDSRVADNSFDAK Unmodified 2307.0979 0.097882729 1120 Q14978;Q14978-3;Q14978-2 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 1 2 2 1 126.47 112.97 3;4 2.5857E-06 7 75505 20150910_Q1_SA_NiHu_Masterprac_group10_C 87.157 69.439 60580000 38198000 2793800 12054000 0 4352600 3181100 8747 1120 8630 38796;38797;38798;38799;38800;38801;38802;38803 25682;25683;25684;25685;25686;25687;25688 25685 7 VRELISDNQYR Unmodified 1391.7157 0.71572665 873 P25205 MCM3 DNA replication licensing factor MCM3 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 85.185 79.595 3 0.036524 1 54510 20150910_Q1_SA_NiHu_Masterprac_group10_B 49.632 28.062 2100600 472650 1627900 0 0 0 0 8748 873 8631 38804;38805 25689 25689 1 VREQSVQEIPVSR Unmodified 1525.8213 0.82125436 295 CON__P06868 yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 2 2 1 1 2 86.626 79.096 2;3 2.441E-34 4 54487 20150910_Q1_SA_NiHu_Masterprac_group15_B 122.78 83.036 61053000 4856900 7668500 1278100 1545600 15116000 30588000 + 8749 295 8632 38806;38807;38808;38809;38810;38811;38812;38813;38814;38815 25690;25691;25692;25693 25691 3 VRFATHAAALSVR Unmodified 1397.7892 0.78916637 865 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 102.17 88.913 3 0.012368 2 66073 20150910_Q1_SA_NiHu_Masterprac_group15_C 53.377 28.682 3536500 1596700 0 0 0 1939800 0 8750 865 8633 38816;38817 25694;25695 25694 2 VRFLEQQNQVLQTK Unmodified 1729.9475 0.9475175 302;789 P35908;CON__P35908;CON__Q6NXH9;CON__Q6IFZ6;Q7Z794;CON__Q7Z794;P04264;CON__P04264 KRT2;KRT77;KRT1 Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 1 no no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 114.63 113.63 3 0.029559 1 73826 20150910_Q1_SA_NiHu_Masterprac_group10_B 41.542 23.838 1474800 0 1474800 0 0 0 0 + 8751 302;789 8634 38818 25696 25696 1 VRGLPWSCSADEVQR Unmodified 1758.8472 0.84715153 322 D6RBM0;E9PCY7;P31943;G8JLB6;D6RIU0;D6RAM1;D6R9T0;D6RFM3;D6RIT2;D6RDU3;D6RJ04;D6RIH9;E7EQJ0;E5RGV0;E7EN40;D6RDL0;D6RF17;D6R9D3 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 2 1 2 124.99 118.43 3 6.0251E-05 5 77552 20150910_Q1_SA_NiHu_Masterprac_group10_B 89.466 68.219 16136000 0 3018700 5614900 1577300 2479100 3445600 8752 322 8635 38819;38820;38821;38822;38823;38824;38825;38826 25697;25698;25699;25700;25701 25701 5 VRHAQSGTIMAVK Unmodified 1396.7609 0.76090271 925 P46734;P46734-2;F8W9D9;P46734-3;E9PRZ0 MAP2K3 Dual specificity mitogen-activated protein kinase kinase 3 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 53.977 48.001 3 1.543E-34 3 34115 20150910_Q1_SA_NiHu_Masterprac_group15_B 121.45 92.493 8231300 0 1031000 1714700 842510 1708900 2934200 8753 925 8636 38827;38828;38829;38830;38831 25702;25703;25704 25704 3 VRIQTQPGYANTLRDAAPK Unmodified 2098.1283 0.12833542 545 F8VVM2;Q00325-2;Q00325 SLC25A3 Phosphate carrier protein, mitochondrial yes no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 2 2 2 2 111.5 104.94 3;4 0.0012872 2 74395 20150910_Q1_SA_NiHu_Masterprac_group15_C 54.355 39.426 29844000 1420500 2856700 0 2001900 14336000 9228700 8754 545 8637 38832;38833;38834;38835;38836;38837;38838;38839;38840 25705;25706 25706 2 VRPCVVYGGADIGQQIR Unmodified 1886.9785 0.97850006 693 O00571;O00571-2;B4DLU5;B4DXX7;O15523 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 130.1 120.6 3 4.9444E-210 6 85216 20150910_Q1_SA_NiHu_Masterprac_group15_B 165.58 128.99 135230000 13146000 18977000 15880000 1710100 5598500 79916000 8755 693 8638 38841;38842;38843;38844;38845;38846 25707;25708;25709;25710;25711;25712 25709 6 VRPLLPSELER Unmodified 1307.7561 0.75613491 767 O95235;D6R9E4;D6RBN1 KIF20A Kinesin-like protein KIF20A yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 129.82 124.85 3 0.0068094 1 84531 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.721 35.634 3368200 0 0 0 0 0 3368200 8756 767 8639 38847 25713 25713 1 VRPSTGNSASTPQSQCLPSEIEVK Unmodified 2571.2599 0.25987945 1599 Q9UJX3-2;Q9UJX3;F8VYX8 ANAPC7 Anaphase-promoting complex subunit 7 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 116.98 112.42 3 0.036403 1 76717 20150910_Q1_SA_NiHu_Masterprac_group15_B 30.767 20.621 2019700 0 0 0 0 0 2019700 8757 1599 8640 38848 25714 25714 1 VRPSTGNSASTPQSQCLPSEIEVKYK Unmodified 2862.4182 0.41817101 1599 Q9UJX3-2;Q9UJX3;F8VYX8 ANAPC7 Anaphase-promoting complex subunit 7 yes no 0 0 2 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 129.71 111.84 4 2.3002E-65 2 80563 20150910_Q1_SA_NiHu_Masterprac_group13_C 112.26 94.789 19060000 0 0 16088000 0 2972300 0 8758 1599 8641 38849;38850 25715;25716 25715 2 VRQQAADLISR Unmodified 1255.6997 0.69968266 746 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 74.596 67.168 3 0.00049202 3 46805 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.067 61.372 7601000 505410 1461400 528970 346660 1847600 2910900 8759 746 8642 38851;38852;38853;38854;38855;38856 25717;25718;25719 25717 3 VRQTQVNEATKAR Unmodified 1499.8168 0.81683768 1342 Q8WWY3;E7EVX8 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 30.039 27.356 3 0.0042614 1 21898 20150910_Q1_SA_NiHu_Masterprac_group13_C 75.911 59.561 3616100 0 814750 2244500 280450 0 276360 8760 1342 8643 38857;38858;38859;38860 25720 25720 1 VRTVVSGSCAAHSLLITTEGK Unmodified 2185.1525 0.15250126 1575 Q9P258 RCC2 Protein RCC2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 2 2 2 128.51 121.32 3;4 1.1078E-186 10 76762 20150910_Q1_SA_NiHu_Masterprac_group10_C 154.72 141.83 170460000 75576000 9555300 39351000 10296000 0 35676000 8761 1575 8644 38861;38862;38863;38864;38865;38866;38867;38868;38869;38870;38871 25721;25722;25723;25724;25725;25726;25727;25728;25729;25730 25730 10 VRWEFCNLKK Unmodified 1378.718 0.71797526 295 CON__P06868 yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 117.82 103.84 3 0.0027908 1 69468 20150910_Q1_SA_NiHu_Masterprac_group10_C 105.17 80.655 3054500 3054500 0 0 0 0 0 + 8762 295 8645 38872 25731 25731 1 VRYSLDPENPTK Unmodified 1417.7201 0.72014333 855 P18621 RPL17 60S ribosomal protein L17 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 98.476 90.43 3 0.0050036 6 61250 20150910_Q1_SA_NiHu_Masterprac_group13_B 64.534 35.289 70687000 14456000 6108400 6633800 16321000 23346000 3822600 8763 855 8646 38873;38874;38875;38876;38877;38878 25732;25733;25734;25735;25736;25737 25732 6 VRYSLDPENPTKSCK Unmodified 1792.8778 0.87778296 855 P18621 RPL17 60S ribosomal protein L17 yes yes 0 0 2 By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 2 2 2 1 2 87.9 81.009 3;4 0.0026045 4 55647 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.116 39.725 19088000 6485100 1454000 2547500 4402300 2147200 2051800 8764 855 8647 38879;38880;38881;38882;38883;38884;38885;38886;38887;38888;38889 25738;25739;25740;25741 25740 3 VSAGNENACLTTK Unmodified 1363.6402 0.64017845 1210 Q5VYS8-6;Q5VYS8;Q5VYT0;Q5VYS8-3;Q5VYS8-2 ZCCHC6 Terminal uridylyltransferase 7 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 63.401 56.723 2 0.013519 1 40142 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.527 40.219 2985400 0 490550 387290 218910 575770 1312900 8765 1210 8648 38890;38891;38892;38893;38894 25742 25742 1 VSAQGITLTDNQRK Unmodified 1529.8162 0.81616898 79 B3KYA3;Q59G71;F5GXX8;Q68CZ2-2;E7ERH3;Q63HR2-5;Q63HR2-2;F8VV64;C9JVR1;Q63HR2-6;Q63HR2;Q63HR2-4;Q68CZ2;E9PGF5;E9PF55;Q9HBL0 TNS1;TNS3;TENC1 Tensin-3;Tensin-like C1 domain-containing phosphatase;Tensin-1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 87.038 77.814 3 0.001045 4 53382 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.809 52.624 9645500 0 988580 2650000 0 3184700 2822200 8766 79 8649 38895;38896;38897;38898 25743;25744;25745;25746 25746 4 VSASSPSLAVASQSDSKQR Unmodified 1903.9599 0.95993268 561 P04150-7;P04150-5;F8W959;P04150-9;P04150-2;P04150-6;P04150-8;P04150-10;P04150;P04150-3;D6RDA9;Q3MSN4 NR3C1 Glucocorticoid receptor yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 82.577 76.745 3 0.0031304 2 58155 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.535 32.882 1477100 0 0 0 242930 535370 698800 8767 561 8650 38899;38900;38901 25747;25748 25748 2 VSASSPSLAVASQSDSKQRR Unmodified 2060.061 0.061043712 561 P04150-7;P04150-5;F8W959;P04150-9;P04150-2;P04150-6;P04150-8;P04150-10;P04150;P04150-3;D6RDA9;Q3MSN4 NR3C1 Glucocorticoid receptor yes no 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 78.896 67.734 4 0.01136 3 47125 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.014 17.473 2756000 0 0 1162200 0 809160 784640 8768 561 8651 38902;38903;38904 25749;25750;25751 25749 3 VSAVPTNMAAK Unmodified 1087.5696 0.56957969 1403 Q96KR1;B5MEH6 ZFR Zinc finger RNA-binding protein yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 81.806 74.144 2 0.00023773 7 52357 20150910_Q1_SA_NiHu_Masterprac_group10_C 98.898 19.75 200960000 41076000 25261000 31769000 24582000 35510000 42761000 8769 1403 8652 38905;38906;38907;38908;38909;38910;38911 25752;25753;25754;25755;25756;25757;25758 25758 7 VSAVPTNMAAK Oxidation (M) 1103.5645 0.56449431 1403 Q96KR1;B5MEH6 ZFR Zinc finger RNA-binding protein yes no 0 1 0 By matching By matching By matching By matching By matching By MS/MS 1 46.858 45.904 2 0.0067525 1 33006 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.531 20.769 0 0 0 0 0 0 0 8770 1403 8652 38912 25759 25759 163 1 VSAVPTNMAAKK Unmodified 1215.6645 0.66454271 1403 Q96KR1;B5MEH6 ZFR Zinc finger RNA-binding protein yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 63.847 58.392 3 0.0021318 3 41139 20150910_Q1_SA_NiHu_Masterprac_group15_B 65.695 44.857 5892100 429750 719070 0 566850 1895400 2281000 8771 1403 8653 38913;38914;38915;38916;38917 25760;25761;25762 25760 3 VSDFGLTK Unmodified 865.45453 0.45453316 912 P41240;E7EQW6 CSK Tyrosine-protein kinase CSK yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 100.39 90.835 2 0.00941 1 61990 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.25 38.788 27107000 0 3397700 6026800 0 4039900 13643000 8772 912 8654 38918;38919;38920;38921 25763 25763 1 VSDHIQWFNK Unmodified 1272.6251 0.62512073 147 B4DZN9;Q6P4F7 ARHGAP11A Rho GTPase-activating protein 11A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 116.67 113.89 3 0.020196 1 77617 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.102 42.437 1830300 0 556360 0 0 0 1273900 8773 147 8655 38922;38923 25764 25764 1 VSEEAESQQQWDTSK Unmodified 1750.7646 0.76458692 1025 Q01082-3;Q01082-2;Q01082 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 73.166 71.033 2 0.023083 1 49116 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.359 35.464 1552300 0 767840 0 0 0 784450 8774 1025 8656 38924;38925 25765 25765 1 VSEFNVSSEGSGEK Unmodified 1454.6525 0.65251728 425 E9PEL7;Q9BVJ6 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 84.817 77.898 2 6.5805E-08 1 53686 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.582 76.253 3047900 0 998480 383190 0 0 1666200 8775 425 8657 38926;38927;38928 25766 25766 1 VSELKEELK Unmodified 1073.5968 0.5968403 1022;1023 Q00839;B3KX72;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 62.815 62.238 2 0.0018449 1 43626 20150910_Q1_SA_NiHu_Masterprac_group15_B 109.83 72.133 3668100 0 0 0 682180 0 2986000 8776 1022;1023 8658 38929;38930 25767 25767 1 VSELKEELKK Unmodified 1201.6918 0.69180331 1022;1023 Q00839;B3KX72;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 2 1 56.057 48.788 3 0.0027504 4 40104 20150910_Q1_SA_NiHu_Masterprac_group13_C 105.2 70.503 24768000 3784300 3753500 5139000 2276200 3613500 6201600 8777 1022;1023 8659 38931;38932;38933;38934;38935;38936;38937 25768;25769;25770;25771 25768 4 VSFPETPK Unmodified 903.47018 0.47018322 1562 Q9NYD6;D6RAG4 HOXC10 Homeobox protein Hox-C10 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 99.601 91.471 2 0.011726 2 61708 20150910_Q1_SA_NiHu_Masterprac_group10_B 91.069 74.105 23565000 643110 4300600 2821800 1669300 3848000 10282000 8778 1562 8660 38938;38939;38940;38941;38942;38943 25772;25773 25773 2 VSGGEDADKARASPSVTCK Unmodified 1933.9164 0.91635331 701 O15014 ZNF609 Zinc finger protein 609 yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 52.335 45.065 4 0.017814 3 37103 20150910_Q1_SA_NiHu_Masterprac_group13_C 37.438 21.264 2678000 0 496050 704860 0 548590 928510 8779 701 8661 38944;38945;38946;38947 25774;25775;25776 25774 3 VSGNPQVHIK Unmodified 1077.5931 0.59309232 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 53.198 48.475 2 0.0093219 3 34751 20150910_Q1_SA_NiHu_Masterprac_group15_B 76.228 39.643 10105000 1245300 2940700 3960500 520940 0 1437900 8780 919 8662 38948;38949;38950;38951;38952 25777;25778;25779 25778 3 VSGNPQVHIKNVK Unmodified 1418.7994 0.7993967 919 P46013;F5H4V4 MKI67 Antigen KI-67 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 57.979 52.875 3 0.001312 4 37929 20150910_Q1_SA_NiHu_Masterprac_group10_B 89.805 62.475 4643800 486000 939220 1707100 798540 0 712900 8781 919 8663 38953;38954;38955;38956;38957 25780;25781;25782;25783 25782 4 VSGQVQALQNHYRK Unmodified 1626.859 0.85903685 690 O00411 POLRMT DNA-directed RNA polymerase, mitochondrial yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 66.177 64.789 3 0.027719 1 45179 20150910_Q1_SA_NiHu_Masterprac_group15_B 36.631 15.825 1546200 0 505070 0 206450 0 834720 8782 690 8664 38958;38959;38960 25784 25784 1 VSGSAAKPRPYACPLCPK Unmodified 1957.9866 0.9866219 1401 Q96K58;C9JHH8;C9JG35;C9JCJ0 ZNF668 Zinc finger protein 668 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 82.67 74.3 4 0.027906 1 52072 20150910_Q1_SA_NiHu_Masterprac_group10_C 35.473 15.424 1422100 1422100 0 0 0 0 0 8783 1401 8665 38961 25785 25785 1 VSGVKPKYNSGALHIK Unmodified 1696.9624 0.96243929 357 G3V2F4;E7EPD8;Q9NUW8;G3V2J6;G3V2U6;Q9BRS7;G3V4W8;G3V5H9 TDP1 Tyrosyl-DNA phosphodiesterase 1 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 82.643 73.418 4 0.020707 1 50767 20150910_Q1_SA_NiHu_Masterprac_group15_B 40.211 21.746 3678800 0 539010 902030 0 816950 1420800 8784 357 8666 38962;38963;38964;38965 25786 25786 1 VSHIDVITAEMAK Unmodified 1412.7334 0.73335055 1625 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 122.42 120.6 3 0.028287 1 81831 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.297 14.052 5111400 0 1187700 0 770060 0 3153600 8785 1625 8667 38966;38967;38968 25787 25787 1 VSHSPALSSDVR Unmodified 1253.6364 0.6364137 1215 Q68CP9-3;Q68CP9;F8VWP4;Q68CP9-2;E7ENG3;F8W108;F8WCU9 ARID2 AT-rich interactive domain-containing protein 2 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 61.291 54.532 3 0.013026 3 38984 20150910_Q1_SA_NiHu_Masterprac_group10_B 54.343 25.385 6930400 596280 778760 1181300 437840 1953000 1983200 8786 1215 8668 38969;38970;38971;38972;38973;38974 25788;25789;25790 25790 3 VSIPVDATESEPK Unmodified 1370.6929 0.69292553 1341 Q8WUF8-3;Q8WUF8;Q8WUF8-2;E9PBM2 FAM172A Protein FAM172A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 109.16 105.5 2 0.031237 1 72238 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.463 39.507 0 0 0 0 0 0 0 8787 1341 8669 38975 25791 25791 1 VSIQPLDETAVTDKENNLHESEYGDQEGK Unmodified 3244.5008 0.50077425 1624 Q9UQ84-4;Q9UQ84 EXO1 Exonuclease 1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 130.98 123.12 4 4.4364E-13 3 83437 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.707 55.533 66854000 0 38368000 8744000 0 0 19742000 8788 1624 8670 38976;38977;38978 25792;25793;25794 25794 3 VSIVNQYGK Unmodified 1006.5447 0.54474515 1474 Q9GZR2 REXO4 RNA exonuclease 4 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 87.146 78.032 2 0.031556 1 58760 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.816 23.749 7294700 799220 925650 1973400 0 2314400 1282000 8789 1474 8671 38979;38980;38981;38982;38983 25795 25795 1 VSKDPSSYVKLSVGK Unmodified 1592.8774 0.87737225 1 A0FGR9 ESYT3 Extended synaptotagmin-3 yes yes 0 0 2 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 2 1 132.86 128.64 2;3 4.5114E-07 4 85526 20150910_Q1_SA_NiHu_Masterprac_group10_B 96.371 63.054 248910000 53097000 144700000 0 51110000 0 0 8790 1 8672 38984;38985;38986;38987 25796;25797;25798;25799 25798 4 VSLAGACGVGGYGSR Unmodified 1409.6721 0.67214728 299 P13647;CON__P13647;F8VV57 KRT5 Keratin, type II cytoskeletal 5 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 112.76 103.62 2 9.109E-09 4 73792 20150910_Q1_SA_NiHu_Masterprac_group15_C 99.344 64.576 55135000 5093000 6566000 11888000 16699000 1278400 13611000 + 8791 299 8673 38988;38989;38990;38991;38992;38993 25800;25801;25802;25803 25802 4 VSLAGACGVGGYGSRSLYNLGGSK Unmodified 2329.1485 0.14847851 299 P13647;CON__P13647;F8VV57 KRT5 Keratin, type II cytoskeletal 5 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 132.85 132.55 3 1.4541E-07 1 85744 20150910_Q1_SA_NiHu_Masterprac_group13_B 63.706 53.95 26006000 0 4469500 0 21537000 0 0 + 8792 299 8674 38994;38995 25804 25804 1 VSLEPHQGPGTPESK Unmodified 1561.7736 0.77363546 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;Q9BTE9 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 73.687 66.292 3 0.0040394 1 46077 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.3 53.3 8153100 1295500 1566000 1790000 992540 1078300 1430800 8793 1121 8675 38996;38997;38998;38999;39000;39001 25805 25805 1 VSPASSVDSNIPSSQGYKK Unmodified 1949.9694 0.96943474 1592 Q9UHB7;Q9UHB7-2 AFF4 AF4/FMR2 family member 4 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 92.475 88.965 3 0.0044972 3 60138 20150910_Q1_SA_NiHu_Masterprac_group13_B 42.059 26.544 6030900 2642900 710340 0 1128400 0 1549300 8794 1592 8676 39002;39003;39004;39005 25806;25807;25808 25806 3 VSPSDTTPLVSR Unmodified 1257.6565 0.65648044 653 H7BXG5;Q9HCK8-2;Q9HCK8 CHD8 Chromodomain-helicase-DNA-binding protein 8 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 90.249 88.216 2 0.027741 1 60231 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.532 30.946 827530 0 229960 0 0 0 597560 8795 653 8677 39006;39007 25809 25809 1 VSQVIMEK Unmodified 932.5001 0.50010314 741 O75475 PSIP1 PC4 and SFRS1-interacting protein yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 70.205 62.799 2 9.5727E-05 5 50252 20150910_Q1_SA_NiHu_Masterprac_group13_C 113.18 44.805 31776000 2733900 3450600 11424000 2092800 3787100 8288200 8796 741 8678 39008;39009;39010;39011;39012;39013;39014 25810;25811;25812;25813;25814 25811 5 VSRDTLYEAVR Unmodified 1307.6834 0.68336389 997 P62906 RPL10A 60S ribosomal protein L10a yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 99.238 91.417 3 0.019796 2 62563 20150910_Q1_SA_NiHu_Masterprac_group15_B 56.205 32.69 4149700 496940 588570 0 0 1573800 1490300 8797 997 8679 39015;39016;39017;39018 25815;25816 25815 2 VSRGDQESPDACLPPTVPEAPAPPQKPLNSQSQK Unmodified 3624.7842 0.78422351 1109 Q14676;Q14676-2;E9PGY5;F8W1C2;F8VZP8;F8VU38;Q14676-3;F8VV34;E7EVA7;H0Y6Z8 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 130.57 120.24 4 3.2484E-12 3 76516 20150910_Q1_SA_NiHu_Masterprac_group10_C 48.392 46.005 63405000 39843000 0 0 0 0 23562000 8798 1109 8680 39019;39020 25817;25818;25819 25819 3 VSRPLELCYAPTKDPK Unmodified 1872.9768 0.97676872 1043 Q06587-2;Q06587 RING1 E3 ubiquitin-protein ligase RING1 yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 1 2 2 2 1 109.81 99.692 3;4 0.0022426 4 66155 20150910_Q1_SA_NiHu_Masterprac_group13_B 56.774 19.591 30818000 6706500 1559300 5424800 4041700 8934100 4152000 8799 1043 8681 39021;39022;39023;39024;39025;39026;39027;39028;39029;39030 25820;25821;25822;25823 25820 4 VSRQSVLCGSQNIVLNGK Unmodified 1958.0367 0.036743217 632 H3BUD2;H3BS05;H3BQA4;H3BN51;H3BR94;Q9BTE1 DCTN5 Dynactin subunit 5 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 130.56 113.72 3 9.2337E-14 2 76258 20150910_Q1_SA_NiHu_Masterprac_group10_C 97.095 73.2 13994000 6317200 0 7677200 0 0 0 8800 632 8682 39031;39032 25824;25825 25825 2 VSSLSSSLSVEGK Unmodified 1278.6667 0.66671078 1199 Q5TGY3 AHDC1 AT-hook DNA-binding motif-containing protein 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 101.47 99.961 2 0.0026185 1 66258 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.798 47.204 1099400 0 1099400 0 0 0 0 8801 1199 8683 39033 25826 25826 1 VSSPAGPTEDNDLSRK Unmodified 1671.8064 0.80639216 1274 Q86YC2 PALB2 Partner and localizer of BRCA2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 1 1 1 1 1 69.658 62.267 3 0.001662 4 45536 20150910_Q1_SA_NiHu_Masterprac_group10_C 53.946 34.269 6556000 1009100 967790 933150 695720 1080800 1869500 8802 1274 8684 39034;39035;39036;39037;39038;39039;39040 25827;25828;25829;25830 25830 4 VSSQFDPNKQTPSGK Unmodified 1618.7951 0.79509919 1030 Q01780;Q01780-2 EXOSC10 Exosome component 10 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 2 2 2 2 2 64.634 57.55 2;3 0.00069161 8 46854 20150910_Q1_SA_NiHu_Masterprac_group13_C 74.789 43.718 48674000 7332500 6787700 10104000 4653000 7158900 12637000 8803 1030 8685 39041;39042;39043;39044;39045;39046;39047;39048;39049;39050;39051;39052;39053 25831;25832;25833;25834;25835;25836;25837;25838 25831 8 VSSQFDPNKQTPSGKK Unmodified 1746.8901 0.89006221 1030 Q01780;Q01780-2 EXOSC10 Exosome component 10 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 2 2 2 3 52.916 47.136 3;4 0.0022916 10 39207 20150910_Q1_SA_NiHu_Masterprac_group13_C 61.649 45.55 36656000 4276200 5299900 6618700 3295100 4041800 13124000 8804 1030 8686 39054;39055;39056;39057;39058;39059;39060;39061;39062;39063;39064;39065;39066;39067 25839;25840;25841;25842;25843;25844;25845;25846;25847;25848 25843 9 VSSQIDTQDSSVK Unmodified 1392.6733 0.67325272 1154 Q16600 ZNF239 Zinc finger protein 239 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 64.203 55.855 2 0.0022322 2 39439 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.171 44.46 2214300 0 257350 248720 0 524630 1183600 8805 1154 8687 39068;39069;39070;39071 25849;25850 25849 2 VSSSCLDLPDSTEEK Unmodified 1665.7403 0.740346 1202 Q5VT52-3;Q5VT52;Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 119.07 106.13 2 0.0060092 2 76945 20150910_Q1_SA_NiHu_Masterprac_group13_C 51.727 33.406 3214500 0 0 955660 0 1024500 1234300 8806 1202 8688 39072;39073;39074 25851;25852 25851 2 VSSVDKQREQTEILESSR Unmodified 2090.0604 0.060375011 1188 Q5T200-2;Q5T200 ZC3H13 Zinc finger CCCH domain-containing protein 13 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 79.589 77.607 4 0.01412 1 53330 20150910_Q1_SA_NiHu_Masterprac_group10_B 39.91 26.208 3516800 0 1224200 0 0 0 2292600 8807 1188 8689 39075;39076 25853 25853 1 VSSVPSNSNVVVGTTNACAPSAR Unmodified 2273.107 0.10700763 282 O43790;CON__O43790 KRT86 Keratin, type II cuticular Hb6 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 104.17 103.41 3 0.00485 1 68411 20150910_Q1_SA_NiHu_Masterprac_group13_B 41.911 27.912 1926100 0 989750 0 936360 0 0 + 8808 282 8690 39077;39078 25854 25854 1 VSTSNEDFSLKDDALAK Unmodified 1838.8898 0.88978743 1250 Q7Z333-3;Q7Z333;Q7Z333-4 SETX Probable helicase senataxin yes no 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 122.1 116.84 3 0.0012468 2 76378 20150910_Q1_SA_NiHu_Masterprac_group10_C 73.833 50.436 11037000 7080100 1244300 0 860710 0 1851600 8809 1250 8691 39079;39080;39081;39082 25855;25856 25856 2 VSTTAPVTLASSK Unmodified 1260.6925 0.6925316 1144 Q15652-2;Q15652-3;Q15652;H7BXU7 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 95.344 89.979 2 0.021556 1 61665 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.606 27.965 5544500 0 1287600 1193200 1031100 0 2032600 8810 1144 8692 39083;39084;39085;39086 25857 25857 1 VSVAVEASADSSK Unmodified 1248.6198 0.61976058 547 Q99590-2;F8VXG7;Q99590 SCAF11 Protein SCAF11 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 77.505 68.464 2 0.010568 2 47174 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.814 19.549 2080100 854140 729090 0 0 496840 0 8811 547 8693 39087;39088;39089;39090 25858;25859 25858 2 VSVAVEASADSSKTDK Unmodified 1592.7893 0.78934511 547 Q99590-2;F8VXG7;Q99590 SCAF11 Protein SCAF11 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 3 2 2 68.045 61.085 2;3 1.6247E-79 9 44519 20150910_Q1_SA_NiHu_Masterprac_group10_C 132.08 106.63 29159000 5569600 3098000 4427500 5764100 6019400 4280800 8812 547 8694 39091;39092;39093;39094;39095;39096;39097;39098;39099;39100;39101;39102 25860;25861;25862;25863;25864;25865;25866;25867;25868 25867 9 VSVIQDFVK Unmodified 1033.5808 0.5807963 1588 Q9UFW8 CGGBP1 CGG triplet repeat-binding protein 1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 133.52 115.68 2 0.0095388 1 82551 20150910_Q1_SA_NiHu_Masterprac_group15_C 85.807 40.827 25085000 0 0 0 0 25085000 0 8813 1588 8695 39103 25869 25869 1 VSVQRTQAPAVATT Unmodified 1427.7732 0.77324153 839 P15880;H0YEN5;E9PQD7 RPS2 40S ribosomal protein S2 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 84.473 76.878 2 0.0009768 5 58111 20150910_Q1_SA_NiHu_Masterprac_group15_C 88.075 69.498 29732000 5110200 2866800 3171000 4919500 9542700 4121900 8814 839 8696 39104;39105;39106;39107;39108;39109 25870;25871;25872;25873;25874 25872 5 VSYRASQPDLVDTPTSSKPQPK Unmodified 2400.2285 0.22850297 919;920 P46013;F5H4V4;P46013-2 MKI67 Antigen KI-67 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 98.588 90.508 3;4 2.9709E-133 15 61295 20150910_Q1_SA_NiHu_Masterprac_group13_B 137.39 111.03 750470000 138470000 72560000 177930000 98840000 94868000 167810000 8815 919;920 8697 39110;39111;39112;39113;39114;39115;39116;39117;39118;39119;39120;39121 25875;25876;25877;25878;25879;25880;25881;25882;25883;25884;25885;25886;25887;25888;25889 25876 15 VTADVINAAEK Unmodified 1129.5979 0.59790293 711 O43175;Q5SZU1 PHGDH D-3-phosphoglycerate dehydrogenase yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 92.971 85.142 2 0.0033399 5 62971 20150910_Q1_SA_NiHu_Masterprac_group15_C 83.137 41.974 21628000 2163800 3028900 2720800 2478900 3255200 7980400 8816 711 8698 39122;39123;39124;39125;39126;39127 25890;25891;25892;25893;25894 25893 5 VTAQQQLEVLLSR Unmodified 1483.8358 0.83584179 214 B8ZZT9;Q9Y5W8-2;Q9Y5W8 SNX13 Sorting nexin-13 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 42.316 37.193 3 0.006304 1 31393 20150910_Q1_SA_NiHu_Masterprac_group15_C 58.098 31.156 4518200 355110 617260 692750 357000 844660 1651400 8817 214 8699 39128;39129;39130;39131;39132;39133 25895 25895 1 VTARPSQPPLPR Unmodified 1317.7517 0.75171823 203 B7ZAS8;Q9ULV3-3;H0Y5D5;Q9BTG3;Q9ULV3-4;Q9ULV3-2;Q5SYW2;Q9ULV3;F5H2X7 CIZ1 Cip1-interacting zinc finger protein yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 79.928 74.213 3 0.01236 1 56619 20150910_Q1_SA_NiHu_Masterprac_group15_C 57.225 24.495 6037200 248090 1335800 0 807540 1124000 2521800 8818 203 8700 39134;39135;39136;39137;39138 25896 25896 1 VTASPLQR Unmodified 870.49232 0.49231565 1172 Q4VXZ8;Q9NUI1;Q9NUI1-3 DECR2 Peroxisomal 2,4-dienoyl-CoA reductase yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 62.525 54.665 2 0.0079237 4 39104 20150910_Q1_SA_NiHu_Masterprac_group10_B 98.458 37.981 19117000 1784700 4886700 6358600 1059200 5027900 0 8819 1172 8701 39139;39140;39141;39142;39143 25897;25898;25899;25900 25900 4 VTATDLDEPDTLHTR Unmodified 1682.8111 0.81114318 1047 Q08554-2;Q08554 DSC1 Desmocollin-1 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 104.06 95.917 2;3 0.00075511 4 64265 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.911 57.004 23045000 0 963180 5916200 5380500 3441200 7344200 8820 1047 8702 39144;39145;39146;39147;39148;39149;39150 25901;25902;25903;25904 25904 4 VTATDLDEPDTLHTRLK Unmodified 1923.9902 0.99017018 1047 Q08554-2;Q08554 DSC1 Desmocollin-1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 116.99 106.89 4 0.035912 1 70275 20150910_Q1_SA_NiHu_Masterprac_group10_B 36.775 19.889 7559300 0 3398400 1982900 0 964280 1213700 8821 1047 8703 39151;39152;39153;39154 25905 25905 1 VTDDMYAEQTENPENPLRCPIK Unmodified 2619.1945 0.19450201 1162 Q2TAL8 QRICH1 Glutamine-rich protein 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 131.88 126.92 3 0.00032389 1 86757 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.252 50.385 0 0 0 0 0 0 0 8822 1162 8704 39155 25906 25906 1 VTDKVLTANSNPSSPSAAK Unmodified 1885.9745 0.97452012 1547 Q9NV56 MRGBP MRG/MORF4L-binding protein yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 77.484 70.516 3 0.0012526 2 55916 20150910_Q1_SA_NiHu_Masterprac_group13_C 58.29 42.117 3230600 1515800 381380 1147300 186140 0 0 8823 1547 8705 39156;39157;39158;39159 25907;25908 25907 2 VTEEIAIPLRR Unmodified 1295.7561 0.75613491 1415 Q96QE3;Q96QE3-2 ATAD5 ATPase family AAA domain-containing protein 5 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 130.77 116.68 3 0.0059216 3 82186 20150910_Q1_SA_NiHu_Masterprac_group13_C 63.184 31.69 18708000 4383300 0 8251700 0 869260 5203800 8824 1415 8706 39160;39161;39162;39163 25909;25910;25911 25909 3 VTEETVYTCTGHPLK Unmodified 1733.8294 0.82943578 909 P40937;F8W9B4;P40937-2 RFC5 Replication factor C subunit 5 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 90.984 88.927 2 0.0024834 1 60960 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.657 30.083 660890 0 0 0 0 0 660890 8825 909 8707 39164 25912 25912 1 VTEGLTDVILYHQPDDKK Unmodified 2070.0633 0.063335123 731 O60506-2;O60506;O60506-4;O60506-3;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 132.67 127.71 3 0.010901 1 87635 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.76 33.18 7671800 0 0 0 0 0 7671800 8826 731 8708 39165 25913 25913 0 VTEGLTDVILYHQPDDKKK Unmodified 2198.1583 0.15829814 731 O60506-2;O60506;O60506-4;O60506-3;O60506-5 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 131.16 126.2 4 0.0012413 1 86012 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.322 38.658 7645900 0 0 0 0 0 7645900 8827 731 8709 39166 25914 25914 1 VTEKIPVRHLYTK Unmodified 1582.9195 0.91951184 1022;1023 Q00839;B3KX72;Q5RI18;Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U no no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 82.073 74.694 3 0.0072279 1 56734 20150910_Q1_SA_NiHu_Masterprac_group15_C 65.241 50.45 7589800 0 1544300 1159100 793690 3680100 412660 8828 1022;1023 8710 39167;39168;39169;39170;39171 25915 25915 1 VTELALTASDRQTK Unmodified 1531.8206 0.82058566 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 92.096 83.072 3 1.3348E-07 1 56939 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.059 67.435 4181100 313010 0 0 0 1129500 2738600 8829 1012 8711 39172;39173;39174 25916 25916 1 VTENLRVLGEAQTK Unmodified 1556.8522 0.85222014 682 I3L1L3;Q9BQG0;Q9BQG0-2 MYBBP1A Myb-binding protein 1A yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 2 2 2 1 2 2 108.02 98.499 2;3 0.0045951 2 67092 20150910_Q1_SA_NiHu_Masterprac_group15_B 57.53 36.747 87785000 8743200 10712000 9484100 1580300 14901000 42365000 8830 682 8712 39175;39176;39177;39178;39179;39180;39181;39182;39183;39184;39185 25917;25918 25918 2 VTENQIPAK Unmodified 998.53966 0.53965977 1533 Q9NQW6;Q9NQW6-2 ANLN Actin-binding protein anillin yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 54.215 48.057 2 1.6235E-19 5 34348 20150910_Q1_SA_NiHu_Masterprac_group15_B 128.38 48.218 36614000 3206600 8243000 11938000 1882200 3409900 7934600 8831 1533 8713 39186;39187;39188;39189;39190;39191 25919;25920;25921;25922;25923 25920 5 VTEQALLRPQSK Unmodified 1368.7725 0.77251325 1516 Q9HB21 PLEKHA1 Pleckstrin homology domain-containing family A member 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 85.691 76.943 3 0.036025 1 53068 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.891 24.341 1535700 0 0 0 0 462590 1073100 8832 1516 8714 39192;39193 25924 25924 1 VTETSSHDIYEEAEADNEESDK Unmodified 2497.0252 0.025230875 1280 Q8IWC1-2;Q8IWC1;H7BY77;Q8IWC1-3 MAP7D3 MAP7 domain-containing protein 3 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 100.15 91.453 3 2.1912E-06 2 68576 20150910_Q1_SA_NiHu_Masterprac_group13_C 64.422 63.475 2191100 0 0 1400000 791100 0 0 8833 1280 8715 39194;39195 25925;25926 25925 2 VTFCSHGNSAFQPIASSCK Unmodified 2096.9408 0.94079392 1609 Q9ULM3 YEATS2 YEATS domain-containing protein 2 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 124.13 114.03 3 1.4949E-11 2 80892 20150910_Q1_SA_NiHu_Masterprac_group13_C 94.845 73.486 11163000 0 0 7093300 927920 781420 2360600 8834 1609 8716 39196;39197;39198;39199 25927;25928 25927 2 VTFGLNR Unmodified 805.44464 0.44463717 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 101.09 94.408 2 5.9358E-21 1 64546 20150910_Q1_SA_NiHu_Masterprac_group15_B 132.72 80.419 17881000 0 0 3236400 2356500 0 12288000 8835 1111 8717 39200;39201;39202 25929 25929 1 VTFGLNRNMTAEFK Unmodified 1626.8188 0.81881152 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 132.87 132.87 3 0.0055299 1 85914 20150910_Q1_SA_NiHu_Masterprac_group13_B 55.98 10.622 23939000 0 0 0 23939000 0 0 8836 1111 8718 39203 25930 25930 1 VTFGLNRNMTAEFKK Unmodified 1754.9138 0.91377454 1111 Q14684-2;Q14684 RRP1B Ribosomal RNA processing protein 1 homolog B yes no 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 131.19 120.78 3;4 0.0024586 6 83428 20150910_Q1_SA_NiHu_Masterprac_group10_B 64.842 46.205 64421000 27066000 2655100 9275000 21477000 3947300 0 8837 1111 8719 39204;39205;39206;39207;39208 25931;25932;25933;25934;25935;25936 25935 6 VTFNLSK Unmodified 807.44905 0.44905385 136 B4DX32;O60870;F5GXB3 KIN DNA/RNA-binding protein KIN17 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 101.21 93.228 2 0.035254 1 62913 20150910_Q1_SA_NiHu_Masterprac_group10_C 84.568 25.651 28618000 3260500 5816200 5702500 0 0 13838000 8838 136 8720 39209;39210;39211;39212 25937 25937 1 VTGDSQPKEQGQGDLKK Unmodified 1813.917 0.91700524 600 G5E9Z8;H0YH39;O76094 SRP72 Signal recognition particle subunit SRP72 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 35.367 30.423 4 0.02611 1 20976 20150910_Q1_SA_NiHu_Masterprac_group15_B 37.913 10.658 4632300 1155100 0 854020 638280 1094100 890860 8839 600 8721 39213;39214;39215;39216;39217 25938 25938 1 VTGPGAEAVQIVAK Unmodified 1338.7507 0.75071518 1371 Q96BD5-2;Q96BD5;Q96BD5-3 PHF21A PHD finger protein 21A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 127.42 124.63 2 0.027141 1 84546 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.436 25.447 3130100 0 424900 0 0 0 2705200 8840 1371 8722 39218;39219 25939 25939 0 VTGRCGSVLVR Unmodified 1202.6554 0.655375 839 P15880;H0YEN5;E9PQD7;E9PMM9;I3L404;E9PM36 RPS2 40S ribosomal protein S2 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 61.735 53.902 3 0.02746 1 38307 20150910_Q1_SA_NiHu_Masterprac_group13_B 52.391 25.948 5720400 0 727720 682950 2395100 1914500 0 8841 839 8723 39220;39221;39222;39223 25940 25940 1 VTHAVVTVPAYFNDAQRQATK Unmodified 2315.2022 0.20222864 823 P11021;B4DEF7 HSPA5 78 kDa glucose-regulated protein yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 130.84 130.23 4 0.018722 1 83662 20150910_Q1_SA_NiHu_Masterprac_group10_B 36.997 21.834 4934000 0 4934000 0 0 0 0 8842 823 8724 39224 25941 25941 1 VTHVEPWEK Unmodified 1123.5662 0.56620887 1203 Q5VTL8;Q5VTL8-2 PRPF38B Pre-mRNA-splicing factor 38B yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 77.773 70.261 2 0.00015575 5 48918 20150910_Q1_SA_NiHu_Masterprac_group13_B 112.36 112.36 15565000 1434400 2967000 1325800 1059500 4808300 3970000 8843 1203 8725 39225;39226;39227;39228;39229;39230 25942;25943;25944;25945;25946 25942 5 VTIAQGGVLPNIQAVLLPK Unmodified 1930.1615 0.16153303 792 Q99878;Q96KK5;Q9BTM1;Q16777;Q93077;Q7L7L0;Q6FI13;P20671;P0C0S8;P04908;H0YFX9;Q96QV6;P16104;Q8IUE6 HIST1H2AJ;HIST1H2AH;H2AFJ;HIST2H2AC;HIST1H2AC;HIST3H2A;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AB;HIST1H2AA;H2AFX;HIST2H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E;Histone H2A;Histone H2A type 1-A;Histone H2A.x;Histone H2A type 2-B yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 134.04 118.35 2 6.8698E-82 1 79971 20150910_Q1_SA_NiHu_Masterprac_group10_C 129.05 108.67 91622000 91622000 0 0 0 0 0 8844 792 8726 39231 25947 25947 1 VTILKGIPIKK Unmodified 1208.822 0.82202963 769 O95243-2 MBD4 Methyl-CpG-binding domain protein 4 no no 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 118.88 107.16 3 0.026728 1 75852 20150910_Q1_SA_NiHu_Masterprac_group15_C 66.92 42.931 3255900 0 0 821800 1111900 1322200 0 8845 769 8727 39232;39233;39234 25948 25948 1 VTINDLNENSVTLIQENCHLNK Unmodified 2567.265 0.26496483 1248 Q7Z2T5;Q7Z2T5-2 TRMT1L TRMT1-like protein yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 133.33 132.72 3 0 1 86342 20150910_Q1_SA_NiHu_Masterprac_group10_B 204.51 185.75 44221000 0 44221000 0 0 0 0 8846 1248 8728 39235 25949 25949 1 VTINDLNENSVTLIQENCHLNKLK Unmodified 2808.444 0.44399183 1248 Q7Z2T5;Q7Z2T5-2 TRMT1L TRMT1-like protein yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 133.38 130.59 4 1.7949E-264 2 88612 20150910_Q1_SA_NiHu_Masterprac_group15_B 162.39 144.39 88042000 0 35803000 0 0 0 52239000 8847 1248 8729 39236;39237 25950;25951 25950 2 VTKNEEPSEEEIDAPKPK Unmodified 2039.0059 0.005879824 1534 Q9NR30;Q9NR30-2 DDX21 Nucleolar RNA helicase 2 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 74.101 67.42 3;4 1.4841E-73 12 47249 20150910_Q1_SA_NiHu_Masterprac_group10_B 129.11 113.51 94887000 20570000 10746000 11416000 9531400 31640000 10984000 8848 1534 8730 39238;39239;39240;39241;39242;39243;39244;39245;39246;39247;39248 25952;25953;25954;25955;25956;25957;25958;25959;25960;25961;25962;25963 25961 12 VTLATLK Unmodified 744.47454 0.47454032 801 P06748-2;P06748;P06748-3;E5RI98 NPM1 Nucleophosmin yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 98.023 88.829 1 0.012318 2 67005 20150910_Q1_SA_NiHu_Masterprac_group13_C 71.342 6.585 13894000 2271000 0 1453700 978330 597420 8593400 8849 801 8731 39249;39250;39251;39252;39253 25964;25965 25964 1 VTLEARNSSEKLPTELSK Unmodified 2001.0742 0.074234161 904 P38432 COIL Coilin yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 109.59 101.61 3 0.004461 2 74321 20150910_Q1_SA_NiHu_Masterprac_group13_C 66.977 53.03 21928000 0 5903300 6107600 6305100 435010 3177000 8850 904 8732 39254;39255;39256;39257;39258 25966;25967 25966 2 VTLEYRPVIDK Unmodified 1331.7449 0.74490152 407 E9PBJ5;P31040;E9PEF8;D6RFM5 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 119.18 113.87 2 0.012145 1 77613 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.604 67.359 11043000 3781000 2041600 0 1254400 0 3966300 8851 407 8733 39259;39260;39261;39262 25968 25968 0 VTLGDTLTRR Unmodified 1130.6408 0.6407708 364 E7EQT4;Q9UKV3;Q9UKV3-5;Q9UKV3-3;Q9UKV3-2;G3V3B0 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 94.669 86.79 2 0.014763 1 59524 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.667 55.95 13124000 1574800 2569100 1051900 1804100 2590800 3533800 8852 364 8734 39263;39264;39265;39266;39267;39268 25969 25969 1 VTLGTQQRQEMDPR Unmodified 1657.8206 0.82060243 1049 Q08AF3;Q08AF3-2;B4E128 SLFN5 Schlafen family member 5 yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 81.832 75.001 3 0.010952 2 57022 20150910_Q1_SA_NiHu_Masterprac_group15_C 50.46 36.028 8032600 947510 1791800 0 1273700 4019500 0 8853 1049 8735 39269;39270;39271;39272 25970;25971 25971 2 VTLSEGPHHVALFK Unmodified 1533.8304 0.83036248 336 O60313;E5KLK1;E5KLJ6;E5KLJ9;O60313-2;E5KLJ5 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 119.81 112.39 2;3 0.0018192 3 77132 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.019 36.456 3859500 802540 1614400 0 0 0 1442500 8854 336 8736 39273;39274;39275 25972;25973;25974 25972 3 VTMQNLNDR Unmodified 1089.5237 0.52369213 298;286;297 P13645;CON__P13645;CON__P02535-1;CON__A2A4G1;Q7Z3Y7;CON__Q148H6;CON__Q7Z3Y7;Q7Z3Z0;CON__Q7Z3Z0;Q7Z3Y8;CON__Q7Z3Y8;CON__Q9Z2K1;CON__Q3ZAW8;E7ENV4;Q7Z3Y9;CON__Q7Z3Y9;P02533;CON__P02533;P08779;CON__P08779 KRT10;KRT28;KRT25;KRT27;KRT26;KRT14;KRT16 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 27;Keratin, type I cytoskeletal 26;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16 no no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 73.91 66.671 2 0.039153 1 53286 20150910_Q1_SA_NiHu_Masterprac_group13_C 60.398 36.309 8025200 0 1932400 941320 1027800 1444500 2679300 + 8855 298;286;297 8737 39276;39277;39278;39279;39280 25975 25975 1 VTNLLMLKGK Unmodified 1115.6737 0.67365083 882;774 P26599;P26599-2;P26599-3;O95758-1;O95758-6;O95758-2;O95758;O95758-5;O95758-4 PTBP1;PTBP3 Polypyrimidine tract-binding protein 1;Polypyrimidine tract-binding protein 3 no no 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 121.98 112.03 2 2.5764E-47 4 76445 20150910_Q1_SA_NiHu_Masterprac_group15_B 138.99 122.41 43916000 0 10291000 9896200 2824500 2526200 18378000 8856 882;774 8738 39281;39282;39283;39284;39285;39286 25976;25977;25978;25979 25978 4 VTPQIDSSRIR Unmodified 1270.6993 0.69934831 1070 Q13118-2;Q13118 KLF10 Krueppel-like factor 10 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 82.501 74.94 3 0.0049621 1 51768 20150910_Q1_SA_NiHu_Masterprac_group13_B 74.841 46.637 8737500 1507200 1093300 1002300 1680900 2031300 1422400 8857 1070 8739 39287;39288;39289;39290;39291;39292 25980 25980 1 VTQAIQSFCLEK Unmodified 1422.7177 0.71770049 558 P49959-2;F8W7U8;P49959;B3KTC7 MRE11A Double-strand break repair protein MRE11A yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.75 126.79 2 3.5413E-18 1 86610 20150910_Q1_SA_NiHu_Masterprac_group15_B 115.37 79.373 13034000 0 0 0 0 0 13034000 8858 558 8740 39293 25981 25981 1 VTQLLPQNVHSHNSISKPQK Unmodified 2254.2182 0.21821306 1618 Q9UNY4;Q9UNY4-2 TTF2 Transcription termination factor 2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 88.004 79.356 4 0.0077373 1 54436 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.115 33.424 8300400 0 0 1535000 903270 1631000 4231100 8859 1618 8741 39294;39295;39296;39297 25982 25982 1 VTRADVDVQPYAFTTK Unmodified 1809.9261 0.92611336 1471 Q9BZE4;B7Z7A3;B4DY13 GTPBP4 Nucleolar GTP-binding protein 1 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 128.46 120.2 3 0.00030036 2 84591 20150910_Q1_SA_NiHu_Masterprac_group15_B 83.751 62.085 32638000 0 2089600 10940000 1771800 5250700 12585000 8860 1471 8742 39298;39299;39300;39301;39302 25983;25984 25984 2 VTSAVVGPSHEVQEQSSGPFK Unmodified 2169.0702 0.070211415 253 C9JJ88;Q2KHR3-2;Q2KHR3 QSER1 Glutamine and serine-rich protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 117.13 105.33 3 0.0021946 1 71939 20150910_Q1_SA_NiHu_Masterprac_group15_B 48.51 27.202 2916000 1158900 0 0 0 679900 1077200 8861 253 8743 39303;39304;39305 25985 25985 1 VTSGGVSESPSGFSK Unmodified 1424.6783 0.6783381 358 O14757-2;F5H7S4;O14757;E7EPP6 CHEK1 Serine/threonine-protein kinase Chk1 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 81.735 74.058 2 0.00048602 6 51076 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.98 59.349 16760000 1789800 2108300 2471200 1953200 3696600 4740400 8862 358 8744 39306;39307;39308;39309;39310;39311;39312 25986;25987;25988;25989;25990;25991 25988 6 VTSSITIYPSDSSSPR Unmodified 1695.8315 0.83154427 1265 Q86V48-2;Q86V48-3;Q86V48 LUZP1 Leucine zipper protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 121.35 111.57 2 0.017856 1 73257 20150910_Q1_SA_NiHu_Masterprac_group10_B 39.753 20.931 1687400 0 1361900 0 0 325440 0 8863 1265 8745 39313;39314 25992 25992 0 VTSVPGKASDPGAASTK Unmodified 1571.8155 0.81550028 372 Q86VM9;E7ERS3;H3BRH3 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 53.069 46.978 3 0.0024018 3 33447 20150910_Q1_SA_NiHu_Masterprac_group15_B 53.395 32.81 30560000 3713900 3367600 3599000 2604500 9528500 7746300 8864 372 8746 39315;39316;39317;39318;39319;39320 25993;25994;25995 25994 3 VTTVVATPGQGPDRPQEVSYTDTK Unmodified 2545.266 0.26601069 946 P49841;P49841-2 GSK3B Glycogen synthase kinase-3 beta yes no 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 115.41 106.28 3 0.00024236 3 75276 20150910_Q1_SA_NiHu_Masterprac_group15_C 44.743 20.461 27756000 0 11081000 7130700 2777500 6766600 0 8865 946 8747 39321;39322;39323;39324 25996;25997;25998 25997 2 VTVAEVQR Unmodified 900.50288 0.50288033 797 P05549-5;Q5TAV5;P05549;H7C4N4;C9JXZ2;H7C5E5;B4DWK3;C1K3N0;P05549-2;Q92754 TFAP2A;TFAP2C Transcription factor AP-2-alpha;Transcription factor AP-2 gamma yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 62.451 57.096 2 0.0061452 2 45622 20150910_Q1_SA_NiHu_Masterprac_group15_C 107.29 17.543 5504200 1225600 156620 0 700800 1282000 2139200 8866 797 8748 39325;39326;39327;39328;39329 25999;26000 26000 2 VTVAGLAGKDPVQCSR Unmodified 1656.8617 0.86173896 1425 Q99497 PARK7 Protein DJ-1 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 114.11 103.25 3 0.0028063 3 70488 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.782 55.782 11540000 1686200 3228200 1112200 0 296110 5217800 8867 1425 8749 39330;39331;39332;39333;39334 26001;26002;26003 26001 3 VTVAGLAGKDPVQCSRDVVICPDASLEDAK Unmodified 3169.5747 0.57474801 1425 Q99497 PARK7 Protein DJ-1 yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 132.94 126.74 4 3.1922E-09 2 85905 20150910_Q1_SA_NiHu_Masterprac_group10_B 59.893 50.143 116590000 0 18197000 93497000 4896400 0 0 8868 1425 8750 39335;39336;39337 26004;26005 26005 1 VTVDTGVIPASEEK Unmodified 1443.7457 0.74568938 734 O60841 EIF5B Eukaryotic translation initiation factor 5B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 117.97 107.63 2 0.0011067 6 70709 20150910_Q1_SA_NiHu_Masterprac_group10_B 73.834 43.267 18307000 5495800 2229200 1907100 2426200 3614200 2635000 8869 734 8751 39338;39339;39340;39341;39342;39343;39344 26006;26007;26008;26009;26010;26011 26010 6 VTYTEFCQGR Unmodified 1259.5605 0.56047157 1267 Q86W50;B7Z3X7 METTL16 Methyltransferase-like protein 16 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 101.82 93.878 2 0.0066106 1 62938 20150910_Q1_SA_NiHu_Masterprac_group10_B 85.355 74.468 5006900 383250 1245700 0 0 1234300 2143600 8870 1267 8752 39345;39346;39347;39348 26012 26012 1 VVAVSSVR Unmodified 815.4865 0.48650199 1390 Q96H79 ZC3HAV1L Zinc finger CCCH-type antiviral protein 1-like yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 58.093 56.111 2 0.01555 2 39718 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.568 27.104 2652500 0 1224500 0 0 0 1428000 8871 1390 8753 39349;39350 26013;26014 26013 2 VVDALNQGLPRVPYRDSK Unmodified 2026.096 0.095972656 1115 Q14807;B7Z265;H3BRB3 KIF22 Kinesin-like protein KIF22 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 130.32 128.46 4 0.0050993 3 85636 20150910_Q1_SA_NiHu_Masterprac_group15_B 46.156 37.495 38468000 0 6123600 0 3583600 0 28761000 8872 1115 8754 39351;39352;39353 26015;26016;26017 26017 3 VVECIDHKAGGRHVAVK Unmodified 1873.9945 0.99448447 434 E9PH13;P49759;P49759-3;F8WBF5 CLK1 Dual specificity protein kinase CLK1 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 54.731 46.091 4 0.0027182 1 32219 20150910_Q1_SA_NiHu_Masterprac_group13_B 51.643 31.393 5932600 0 0 1132800 1939700 2860200 0 8873 434 8755 39354;39355;39356 26018 26018 1 VVECLDHAR Unmodified 1097.5288 0.52877751 944 P49761-1;P49761;H3BUL5;H3BVF8;H3BQG1 CLK3 Dual specificity protein kinase CLK3 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 53.709 47.732 2 9.4916E-42 4 34233 20150910_Q1_SA_NiHu_Masterprac_group15_B 140.83 97.527 11165000 0 1690100 2499700 691630 1724200 4558900 8874 944 8756 39357;39358;39359;39360;39361 26019;26020;26021;26022 26020 4 VVECLDHARGK Unmodified 1282.6452 0.64520425 944 P49761-1;P49761;H3BUL5;H3BVF8;H3BQG1 CLK3 Dual specificity protein kinase CLK3 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 44.138 38.658 2;3 7.6515E-30 8 31307 20150910_Q1_SA_NiHu_Masterprac_group13_C 129.88 106.12 71050000 5790700 11787000 23072000 8230700 7004600 15165000 8875 944 8757 39362;39363;39364;39365;39366;39367;39368;39369;39370;39371;39372 26023;26024;26025;26026;26027;26028;26029;26030 26025 8 VVEELTRIH Unmodified 1094.6084 0.60840804 148 B4DZP5;Q16531;F8WF81;F5GZ34;B4DG00 DDB1 DNA damage-binding protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 95.433 87.47 2 0.017712 2 59193 20150910_Q1_SA_NiHu_Masterprac_group10_B 90.15 41.09 8290000 693890 1853400 1698600 565660 633110 2845400 8876 148 8758 39373;39374;39375;39376;39377;39378 26031;26032 26032 2 VVELLLQHK Unmodified 1077.6546 0.65462995 386 E7EUI3;Q99728 BARD1 BRCA1-associated RING domain protein 1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 120.82 110.59 2 0.016491 2 79701 20150910_Q1_SA_NiHu_Masterprac_group13_C 73.233 30.991 13266000 0 1275300 2239500 0 115100 9636300 8877 386 8759 39379;39380;39381;39382 26033;26034 26033 2 VVETELQEGATK Unmodified 1302.6667 0.66671078 1325 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 79.045 71.685 2 3.0634E-05 5 50043 20150910_Q1_SA_NiHu_Masterprac_group10_B 100.38 74.675 10609000 0 2432800 1385400 748460 2237300 3805000 8878 1325 8760 39383;39384;39385;39386;39387 26035;26036;26037;26038;26039 26039 5 VVFSQQELRK Unmodified 1232.6877 0.68772099 509 F5H7C4;F5H6G9;F5H199;H0YFW5;Q8IXL7-2;Q8IXL7 MSRB3 Methionine-R-sulfoxide reductase B3 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 89.421 81.557 3 0.0014733 7 55635 20150910_Q1_SA_NiHu_Masterprac_group10_B 97.965 36.372 9952400 1449300 1680200 1924800 671150 1471700 2755200 8879 509 8761 39388;39389;39390;39391;39392;39393;39394 26040;26041;26042;26043;26044;26045;26046 26044 7 VVGCSCVVVK Unmodified 1105.5624 0.56238582 875 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 81.361 73.816 2 0.009973 1 56262 20150910_Q1_SA_NiHu_Masterprac_group15_C 74.533 46.889 26718000 3585900 2224100 1059400 3703200 10827000 5317900 8880 875 8762 39395;39396;39397;39398;39399;39400 26047 26047 1 VVGCSCVVVKDYGK Unmodified 1568.7691 0.76908413 875 P25398 RPS12 40S ribosomal protein S12 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 95.108 86.095 3 0.0047535 4 58295 20150910_Q1_SA_NiHu_Masterprac_group13_B 57.267 36.208 8249400 230760 0 768900 3121400 3056700 1071700 8881 875 8763 39401;39402;39403;39404;39405 26048;26049;26050;26051 26048 4 VVGEDVATSSSAK Unmodified 1248.6198 0.61976058 464 Q03164-2;Q03164;E9PQG7;E9PR05 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 59.288 52.696 2 0.0015944 6 38164 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.371 52.457 12683000 1817900 1697400 1643300 2347300 2975800 2201000 8882 464 8764 39406;39407;39408;39409;39410;39411 26052;26053;26054;26055;26056;26057 26054 6 VVLAEVIQAFSAPENAVRMDEAR Oxidation (M) 2530.285 0.28497199 492 F5GXW5;Q99622 C12orf57 Protein C10 yes no 0 1 1 By matching By matching By matching By matching By MS/MS By matching 1 133.74 115.9 3 0.0046766 1 82864 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.592 34.859 0 0 0 0 0 0 0 8883 492 8765 39412 26058 26058 57 1 VVLVLAGR Unmodified 825.54362 0.54362294 982 P61353 RPL27 60S ribosomal protein L27 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 125.48 114.26 2 0.0067249 3 75485 20150910_Q1_SA_NiHu_Masterprac_group10_C 94.662 43.09 37581000 5040100 0 8910500 2186700 8589200 12855000 8884 982 8766 39413;39414;39415;39416;39417 26059;26060;26061 26061 3 VVNANQNASPNVPGK Unmodified 1507.7743 0.77430417 351 F5H7K2;Q8IWI9;E7ENI0;H3BP52;H3BTF4 MGA MAX gene-associated protein yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 1 1 1 1 1 66.52 59.258 2 0.0049454 4 43751 20150910_Q1_SA_NiHu_Masterprac_group10_C 53.168 36.033 8130500 1630600 905250 1423600 1007500 1407600 1755900 8885 351 8767 39418;39419;39420;39421;39422;39423;39424 26062;26063;26064;26065 26064 3 VVNGAAASQPPSK Unmodified 1224.6463 0.64625011 746 O75533 SF3B1 Splicing factor 3B subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 43.801 37.635 2 0.0022326 3 27799 20150910_Q1_SA_NiHu_Masterprac_group10_C 66.393 35.824 4491600 487810 1066700 820510 0 595620 1520900 8886 746 8768 39425;39426;39427;39428;39429 26066;26067;26068 26068 3 VVNITSPGHDASSRSPTTTASVSATAAPR Unmodified 2837.4268 0.42676186 196 B7Z8R4;Q15723-4;E9PCX3;Q15723-2;Q15723-3;Q15723-1;Q15723 ELF2 ETS-related transcription factor Elf-2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 100.46 97.503 4 6.7803E-08 2 66435 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.319 52.972 2274000 0 0 0 0 0 2274000 8887 196 8769 39430 26069;26070 26070 2 VVNLGVLAQK Unmodified 1039.639 0.63897988 1331 Q8NI36 WDR36 WD repeat-containing protein 36 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 131.16 129.3 2 0.0026605 2 86737 20150910_Q1_SA_NiHu_Masterprac_group15_B 100.25 68.375 206200000 0 183070000 0 2206700 0 20927000 8888 1331 8770 39431;39432;39433 26071;26072 26071 2 VVNLHPLKKQPPSFPGAAEER Unmodified 2313.2593 0.25934959 1059 Q12789-3;Q12789;H7BYG6 GTF3C1 General transcription factor 3C polypeptide 1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 119.38 107.67 4 0.0061497 1 77973 20150910_Q1_SA_NiHu_Masterprac_group13_C 43.164 31.296 5035300 0 0 1646600 1792100 1596600 0 8889 1059 8771 39434;39435;39436 26073 26073 1 VVNQGTGKDLDPNNVIIEQEER Unmodified 2466.235 0.23504491 141 Q9NP64-2;B4DY38;Q9NP64;E7EPF0 ZCCHC17 Nucleolar protein of 40 kDa yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 130.37 117.37 3 7.5389E-46 4 81846 20150910_Q1_SA_NiHu_Masterprac_group13_C 108.14 86.036 33354000 14462000 3025800 9430400 0 6435900 0 8890 141 8772 39437;39438;39439;39440 26074;26075;26076;26077 26074 4 VVPNPFSESGGDMK Unmodified 1462.6762 0.67622961 947 P49916-2;P49916 LIG3 DNA ligase 3 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 133.09 117.4 2 0.027963 1 78857 20150910_Q1_SA_NiHu_Masterprac_group10_C 52.821 37.825 13301000 13301000 0 0 0 0 0 8891 947 8773 39441 26078 26078 0 VVPPLDEDGR Unmodified 1095.556 0.55603811 589 P24941-2;P24941;G3V5T9;E7ESI2 CDK2 Cyclin-dependent kinase 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 96.473 84.675 2 0.019916 1 58087 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.694 44.562 8244300 0 0 867220 0 1675500 5701600 8892 589 8774 39442;39443;39444 26079 26079 1 VVPQQITHTSPR Unmodified 1361.7415 0.74154747 652 Q9H0E3;H7BXF5;Q9H0E3-3 SAP130 Histone deacetylase complex subunit SAP130 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 71.072 63.728 3 0.0029725 3 45196 20150910_Q1_SA_NiHu_Masterprac_group10_C 69.216 50.25 15427000 951190 2578200 2611800 755960 4516900 4012900 8893 652 8775 39445;39446;39447;39448;39449;39450 26080;26081;26082 26082 3 VVQHLGPATDFYKK Unmodified 1601.8566 0.85657723 207 O95487-2;O95487;B7ZKM8 SEC24B Protein transport protein Sec24B yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 2 1 104.34 94.733 4 0.0012094 3 64769 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.798 43.447 5090000 785270 0 0 550880 2074100 1679700 8894 207 8776 39451;39452;39453;39454;39455 26083;26084;26085 26083 3 VVQNDAYTAPALPSSIR Unmodified 1800.937 0.9370124 1465 Q9BY77;Q9BY77-2;B4DMM2;F8WCX5 POLDIP3 Polymerase delta-interacting protein 3 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 132.6 127.29 2 2.7429E-22 4 87717 20150910_Q1_SA_NiHu_Masterprac_group15_B 106.57 106.57 87157000 35218000 19908000 0 7173700 0 24858000 8895 1465 8777 39456;39457;39458;39459 26086;26087;26088;26089 26087 4 VVQNDAYTAPALPSSIRTK Unmodified 2030.0797 0.07965389 1465 Q9BY77;Q9BY77-2;B4DMM2;F8WCX5 POLDIP3 Polymerase delta-interacting protein 3 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 129.54 119.16 2;3 0 6 77093 20150910_Q1_SA_NiHu_Masterprac_group10_C 211.26 198.72 341800000 139650000 14878000 86366000 10036000 15010000 75858000 8896 1465 8778 39460;39461;39462;39463;39464;39465;39466 26090;26091;26092;26093;26094;26095 26094 6 VVQPQEEIATK Unmodified 1240.6663 0.66631685 1393 Q96HW7;Q96HW7-2;E9PIM3;F8WAA7 INTS4 Integrator complex subunit 4 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 84.111 75.539 2 0.011013 1 58860 20150910_Q1_SA_NiHu_Masterprac_group13_C 63.694 50.417 15416000 0 0 2914900 2076800 4611700 5812800 8897 1393 8779 39467;39468;39469;39470 26096 26096 1 VVRSVHYCPATK Unmodified 1415.7344 0.73435361 873 P25205 MCM3 DNA replication licensing factor MCM3 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 51.896 44.787 3 0.010429 2 32296 20150910_Q1_SA_NiHu_Masterprac_group15_B 58.781 58.781 2917400 122400 526250 798740 0 545180 924780 8898 873 8780 39471;39472;39473;39474;39475 26097;26098 26098 2 VVSQSQPGSRSSSPGK Unmodified 1586.8012 0.8012472 211 B7ZLX3 CLASP1 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 30.561 22.991 3 0.0067411 1 18931 20150910_Q1_SA_NiHu_Masterprac_group13_C 47.301 32.51 325560 0 0 325560 0 0 0 8899 211 8781 39476 26099 26099 1 VVSTHEQVLR Unmodified 1166.6408 0.6407708 286 P02533;CON__P02533 KRT14 Keratin, type I cytoskeletal 14 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 62.9 53.392 2 0.015978 1 37811 20150910_Q1_SA_NiHu_Masterprac_group13_B 67.08 7.6618 2499900 0 0 661270 1688400 150190 0 + 8900 286 8782 39477;39478;39479 26100 26100 1 VVSTHEQVLRTK Unmodified 1395.7834 0.78341229 286 P02533;CON__P02533 KRT14 Keratin, type I cytoskeletal 14 yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 48.912 47.607 3 0.0036351 1 33447 20150910_Q1_SA_NiHu_Masterprac_group13_B 69.229 5.2631 3514400 0 774100 0 2740300 0 0 + 8901 286 8783 39480;39481 26101 26101 1 VVTSEDQVQEGTK Unmodified 1418.6889 0.68890278 421 E9PD90;Q8WWK9;C9J7Y4;Q8WWK9-3;A8MYU4 CKAP2 Cytoskeleton-associated protein 2 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 59.293 49.935 2 0.021532 1 35638 20150910_Q1_SA_NiHu_Masterprac_group15_B 47.621 25.083 1001200 0 0 194640 0 380580 426010 8902 421 8784 39482;39483;39484 26102 26102 1 VVVDGSGQCHSTDTVK Unmodified 1687.7835 0.78354822 1513 Q9HAU4 SMURF2 E3 ubiquitin-protein ligase SMURF2 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 50.582 49.394 3 0.00023113 2 35535 20150910_Q1_SA_NiHu_Masterprac_group10_B 73.722 73.722 2521900 0 890180 0 478490 0 1153200 8903 1513 8785 39485;39486;39487 26103;26104 26104 1 VVVEPPEGEEK Unmodified 1210.6081 0.60813326 486 F5H2G1;F5GWX5;Q14839;Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 80.622 72.97 2 4.2677E-55 9 50845 20150910_Q1_SA_NiHu_Masterprac_group10_B 139.31 104.53 92198000 1304700 31125000 26591000 1810000 3370700 27996000 8904 486 8786 39488;39489;39490;39491;39492;39493;39494;39495 26105;26106;26107;26108;26109;26110;26111;26112;26113 26112 9 VVVSTNIAETSLTIDGVVFVIDPGFAK Unmodified 2790.5055 0.50551268 524 F5H6K0;O43143 DHX15 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 134.2 118.51 2 0.010246 1 80188 20150910_Q1_SA_NiHu_Masterprac_group10_C 33.676 28.008 78351000 78351000 0 0 0 0 0 8905 524 8787 39496 26114 26114 1 VVVVEQNGSFQVKIPK Unmodified 1770.004 0.003969751 1320 Q8NDX6 ZNF740 Zinc finger protein 740 yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 132.78 122.35 3 2.7486E-50 3 83744 20150910_Q1_SA_NiHu_Masterprac_group13_C 119.17 96.777 159380000 49913000 18868000 56197000 29973000 4425300 0 8906 1320 8788 39497;39498;39499;39500;39501 26115;26116;26117 26116 3 VVVVVPNEEDWKK Unmodified 1539.8297 0.82969378 640 H3BQZ7;Q1KMD3 hCG_2044799;HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 130.45 124.34 3 0.0011548 3 80555 20150910_Q1_SA_NiHu_Masterprac_group15_C 70.563 51.926 12651000 0 6072700 0 4699700 1878800 0 8907 640 8789 39502;39503;39504 26118;26119;26120 26119 3 VVWNSSTVQQK Unmodified 1274.6619 0.66190017 1160 Q9ULU4-14;Q2HXV3;Q9ULU4-12;Q9ULU4-13;H7C4X9;Q9ULU4-9;F8WAN7;Q9ULU4-4;Q9ULU4-3;Q9ULU4-6;H7C0U2 ZMYND8 Protein kinase C-binding protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 90.799 81.849 2 0.00036285 1 56138 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.452 61.91 1604000 0 0 0 0 294040 1309900 8908 1160 8790 39505;39506 26121 26121 1 VVWVEESDK Unmodified 1089.5342 0.53424004 693 O00571;O00571-2 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 100.58 90.907 2 0.0061685 1 62003 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.178 68.041 20357000 545650 2330500 935690 0 3590500 12954000 8909 693 8791 39507;39508;39509;39510;39511 26122 26122 1 VVWVEESDKR Unmodified 1245.6354 0.63535107 693 O00571;O00571-2 DDX3X ATP-dependent RNA helicase DDX3X yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 86.485 77.391 3 0.025739 2 53413 20150910_Q1_SA_NiHu_Masterprac_group15_B 51.276 34.363 7191400 647570 1369400 432780 0 427570 4314100 8910 693 8792 39512;39513;39514;39515;39516 26123;26124 26123 2 VWDPDNPLTDR Unmodified 1326.6204 0.62042929 754 O94776;Q68DB1 MTA2;DKFZp686F2281 Metastasis-associated protein MTA2 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.92 131.31 2 1.7029E-05 1 84781 20150910_Q1_SA_NiHu_Masterprac_group10_B 104.82 75.753 10943000 0 10943000 0 0 0 0 8911 754 8793 39517 26125 26125 1 VWLDPNETNEIANANSRQQIRK Unmodified 2595.3154 0.31536092 1016 P84098 RPL19 60S ribosomal protein L19 yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 130.28 129.67 4 4.6236E-06 1 83128 20150910_Q1_SA_NiHu_Masterprac_group10_B 72.359 62.793 2907400 0 2907400 0 0 0 0 8912 1016 8794 39518 26126 26126 1 VWLDQKEDDK Unmodified 1274.6143 0.61428128 1207 Q5VVJ2 MYSM1 Histone H2A deubiquitinase MYSM1 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 76.716 68.365 3 0.0054033 3 54360 20150910_Q1_SA_NiHu_Masterprac_group13_C 86.882 33.758 7170400 596590 0 1624900 1214000 1827600 1907400 8913 1207 8795 39519;39520;39521;39522;39523 26127;26128;26129 26128 3 VYACEVTHQGLSSPVTK Unmodified 1874.9196 0.91964777 782 P01834 IGKC Ig kappa chain C region yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 109.15 99.188 3 0.00067875 1 72826 20150910_Q1_SA_NiHu_Masterprac_group13_C 70.41 56.898 6793300 680760 1105400 3442600 865770 698870 0 8914 782 8796 39524;39525;39526;39527;39528 26130 26130 1 VYAENAIR Unmodified 934.48723 0.48723027 541 F8VUA2;Q9HD42;F8VVT7 CHMP1A Charged multivesicular body protein 1a yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 64.551 62.468 2 0.0079613 1 43748 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.523 39.708 7085200 0 1217800 0 0 0 5867300 8915 541 8797 39529;39530 26131 26131 1 VYALPEDLVEVKPK Unmodified 1598.892 0.89195969 87 B7Z6M1;F8W8D8;B4DGB4;P13797;B4DI60 PLS3 Plastin-3 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 133.48 132.88 3 0.0032525 1 86516 20150910_Q1_SA_NiHu_Masterprac_group10_B 60.364 43.625 10275000 0 10275000 0 0 0 0 8916 87 8798 39531 26132 26132 1 VYAVATSTNTPCAR Unmodified 1509.7246 0.72457678 1057 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 81.728 80.172 2 0.017005 1 55181 20150910_Q1_SA_NiHu_Masterprac_group15_B 78.814 54.389 0 0 0 0 0 0 0 8917 1057 8799 39532 26133 26133 1 VYAVATSTNTPCARIPR Unmodified 1875.9625 0.96251564 1057 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 110.1 106.44 3 0.0027559 1 72814 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.5 40.857 2376400 0 0 0 0 0 2376400 8918 1057 8800 39533 26134 26134 1 VYEELRATGAAAAEAK Unmodified 1648.842 0.84204938 1321;411 E9PC67;F8VQZ0;Q8NE71;Q8NE71-2;H0YGW7 ABCF1 ATP-binding cassette sub-family F member 1 no no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 97.69 92.463 3 0.016946 1 62146 20150910_Q1_SA_NiHu_Masterprac_group10_B 41.621 7.5711 8048700 0 1521500 0 551010 2282900 3693300 8919 411;1321 8801 39534;39535;39536;39537 26135 26135 1 VYENYPTYDLTER Unmodified 1661.7573 0.7573167 901 P35659;P35659-2;B4DFG0;H0Y993 DEK Protein DEK yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 132.15 115.01 2 0.012023 2 80880 20150910_Q1_SA_NiHu_Masterprac_group15_C 53.448 14.442 10220000 4547300 0 3827200 0 1845600 0 8920 901 8802 39538;39539;39540 26136;26137 26136 2 VYENYPTYDLTERK Unmodified 1789.8523 0.85227972 901 P35659;P35659-2;B4DFG0;H0Y993 DEK Protein DEK yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 2 4 2 121.11 110.93 2;3 0.00035887 8 72176 20150910_Q1_SA_NiHu_Masterprac_group13_B 86.756 76.141 222590000 29192000 36544000 48587000 21197000 8645700 78426000 8921 901 8803 39541;39542;39543;39544;39545;39546;39547;39548;39549;39550;39551;39552;39553;39554;39555 26138;26139;26140;26141;26142;26143;26144;26145 26138 7 VYENYPTYDLTERKDFIK Unmodified 2293.1267 0.12666366 901 P35659;P35659-2;B4DFG0;H0Y993 DEK Protein DEK yes no 0 0 2 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 132.2 125.32 4 0.001451 3 84791 20150910_Q1_SA_NiHu_Masterprac_group13_B 61.165 39.857 83535000 29943000 0 0 35224000 0 18368000 8922 901 8804 39556;39557;39558 26146;26147;26148 26146 3 VYGNIRAVASR Unmodified 1204.6677 0.66765425 1538 Q9NRX1 PNO1 RNA-binding protein PNO1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 83.336 74.533 3 0.017384 1 51614 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.785 25.37 9554300 1498000 1570300 1925100 1960900 2599900 0 8923 1538 8805 39559;39560;39561;39562;39563 26149 26149 1 VYIMPKPARR Unmodified 1229.7067 0.70668229 1393 Q96HW7;Q96HW7-4 INTS4 Integrator complex subunit 4 yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 72.177 63.779 3 0.0102 1 44549 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.698 64.86 1937600 0 0 0 0 728780 1208900 8924 1393 8806 39564;39565 26150 26150 1 VYLSGKAVPLTVAK Unmodified 1444.8654 0.865351 1389 Q96GM8;B4DEM6 TOE1 Target of EGR1 protein 1 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 126.92 121.49 3 0.0011291 2 79644 20150910_Q1_SA_NiHu_Masterprac_group13_B 71.558 61.907 8513400 7452700 482490 0 578240 0 0 8925 1389 8807 39566;39567;39568 26151;26152 26151 2 VYNYNHLMPTRYSVDIPLDK Unmodified 2437.21 0.21001614 982 P61353 RPL27 60S ribosomal protein L27 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 133.23 115.38 4 0.001181 1 82277 20150910_Q1_SA_NiHu_Masterprac_group15_C 53.21 40.216 137850000 0 0 0 0 137850000 0 8926 982 8808 39569 26153 26153 1 VYTCTICSR Unmodified 1158.5162 0.51616391 555 Q8TF68-3;F8W6Q3;Q8TF68-2;Q8TF68 ZNF384 Zinc finger protein 384 yes no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 72.104 64.642 2 1.0865E-07 6 45375 20150910_Q1_SA_NiHu_Masterprac_group10_C 118.71 83.957 59337000 14470000 5022900 8346200 6747400 13279000 11472000 8927 555 8809 39570;39571;39572;39573;39574;39575;39576 26154;26155;26156;26157;26158;26159 26158 6 VYTLSVSGDR Unmodified 1095.556 0.55603812 719 O43684-2;O43684;B4DDM6 BUB3 Mitotic checkpoint protein BUB3 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 97.159 94.601 2 0.0086316 1 64608 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.706 58.96 1669600 0 0 0 0 0 1669600 8928 719 8810 39577 26160 26160 1 VYTLSVSGDRLIVGTAGRR Unmodified 2019.1225 0.12252176 719 O43684-2;O43684;B4DDM6 BUB3 Mitotic checkpoint protein BUB3 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 1 2 132.49 129.18 3;4 0.00098434 3 87542 20150910_Q1_SA_NiHu_Masterprac_group15_B 80.459 68.095 94550000 0 0 0 7567500 0 86982000 8929 719 8811 39578;39579;39580 26161;26162;26163 26162 3 VYVGNLGNNGNK Unmodified 1247.6258 0.62584901 160 B4E241;P84103 SFRS3;SRSF3 Serine/arginine-rich splicing factor 3 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 78.728 71.368 2 4.1493E-50 5 49733 20150910_Q1_SA_NiHu_Masterprac_group10_B 131.09 81.787 122900000 0 14659000 8441500 4742600 17903000 77155000 8930 160 8812 39581;39582;39583;39584;39585 26164;26165;26166;26167;26168 26168 5 VYVGNLGNNGNKTELER Unmodified 1875.9439 0.94388869 160 B4E241;P84103 SFRS3;SRSF3 Serine/arginine-rich splicing factor 3 yes no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 103.41 95.076 3 0.0021642 3 70586 20150910_Q1_SA_NiHu_Masterprac_group13_C 55.011 36.188 8771100 961500 2630200 1475400 0 0 3704000 8931 160 8813 39586;39587;39588;39589 26169;26170;26171 26169 3 WASDEMPSTSNGESSK Unmodified 1711.6995 0.69954382 101 Q5TDE7;Q5TDE8;B4DLZ9;Q5VTB9 RNF220 E3 ubiquitin-protein ligase RNF220 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 94.76 83.063 2 0.01235 2 56976 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.045 41.975 2884700 0 0 738650 0 214790 1931300 8932 101 8814 39590;39591;39592 26172;26173 26173 2 WAVIQGQAVRK Unmodified 1254.7197 0.71968982 1278 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 93.046 90.889 3 0.0066156 1 62123 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.593 16.73 2258900 0 0 0 0 0 2258900 8933 1278 8815 39593 26174 26174 1 WCDCKLPNSK Unmodified 1306.5798 0.5798268 1073 Q13148;Q13148-2;B1AKP7;G3V162;B4DJ45 TARDBP TAR DNA-binding protein 43 yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 73.151 67.302 3 0.0042885 2 46907 20150910_Q1_SA_NiHu_Masterprac_group15_B 88.155 75.233 9783500 0 0 1819100 859410 0 7104900 8934 1073 8816 39594;39595;39596 26175;26176 26176 2 WCPTTNKPVKSPTPTVNPR Unmodified 2179.1208 0.1208072 238 C9JA69;Q8WY36-2;Q8WY36;C9J8D0;C9JYU6;C9JZA0;A2RRM7 BBX HMG box transcription factor BBX yes no 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 96.983 88.971 4 0.00095274 2 61087 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.307 60.307 7381100 825520 1317400 985130 615500 1254500 2383100 8935 238 8817 39597;39598;39599;39600;39601;39602 26177;26178 26177 2 WDLSELPKFEK Unmodified 1390.7133 0.71326704 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 133.52 115.68 3 0.021984 1 82600 20150910_Q1_SA_NiHu_Masterprac_group15_C 54.772 31.887 175340000 0 0 0 0 175340000 0 8936 1361;629 8818 39603 26179 26179 1 WEAVDESELEAQAVTTSK Unmodified 1991.9324 0.93238053 378 O15042-2;E7ET15;O15042;H7C4V2;C9JB80;O15042-3 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 133.08 132.78 2 4.759E-14 2 85996 20150910_Q1_SA_NiHu_Masterprac_group10_B 99.011 84.745 14587000 0 9552300 0 5034300 0 0 8937 378 8819 39604;39605 26180;26181 26181 2 WEGLVYAPPGKEK Unmodified 1472.7664 0.76636524 1639 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 127.05 118.12 2;3 0.0030088 8 77064 20150910_Q1_SA_NiHu_Masterprac_group10_C 64.313 45.675 119760000 33015000 6996300 37178000 12619000 14920000 15037000 8938 1639 8820 39606;39607;39608;39609;39610;39611;39612;39613;39614;39615;39616 26182;26183;26184;26185;26186;26187;26188;26189 26189 8 WEQQLQEEQEQK Unmodified 1601.7322 0.73216458 460 E9PMS6;Q8WWI1-3;E9PMT2;Q8WWI1;E9PLH4;Q8WWI1-4;F8WD26;Q8WWI1-2;H0YDQ3;E9PMP7;H0Y424 LMO7 LIM domain only protein 7 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 86.798 77.573 2 0.0030011 1 53453 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.29 53.56 2608000 0 654140 803500 0 484820 665590 8939 460 8821 39617;39618;39619;39620 26190 26190 1 WEQQVSAADGKPGRQSR Unmodified 1898.9347 0.93472099 1237 Q6W2J9;Q6W2J9-4;Q6W2J9-2;H7BYY2;A6NE70;H7C2V9 BCOR BCL-6 corepressor yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 60.435 53.776 4 0.011704 1 38273 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.359 28.644 6275300 923120 624860 793660 499040 1612200 1822500 8940 1237 8822 39621;39622;39623;39624;39625;39626 26191 26191 1 WFPAVCAHSK Unmodified 1201.5702 0.57024839 352;968 P55265;P55265-4;E7ENU4;P55265-5;H0YCK3;P55265-2;P55265-3 ADAR Double-stranded RNA-specific adenosine deaminase no no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 1 2 111.22 104.21 2;3 0.0090185 4 68825 20150910_Q1_SA_NiHu_Masterprac_group13_B 72.321 59.745 16455000 0 3234700 2794000 2484900 740160 7200800 8941 352;968 8823 39627;39628;39629;39630;39631;39632;39633;39634;39635 26192;26193;26194;26195 26192 4 WGEEEAELNK Unmodified 1203.5408 0.54078198 938 P49589;P49589-3;P49589-2;B4DKY1;A8MVQ3 CARS Cysteine--tRNA ligase, cytoplasmic yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 94.983 87.403 2 0.021394 2 59351 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.466 47.322 3626500 0 728410 309230 433020 1194000 961800 8942 938 8824 39636;39637;39638;39639;39640 26196;26197 26197 2 WGETTFMAK Unmodified 1069.4903 0.49026674 1253 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 WAPAL Wings apart-like protein homolog yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 131.7 116.01 2 0.021781 1 77355 20150910_Q1_SA_NiHu_Masterprac_group10_C 68.846 43.225 6964200 6964200 0 0 0 0 0 8943 1253 8825 39641 26198 26198 1 WGQASSDRAAVCGECGK Unmodified 1837.7836 0.783565 1408 Q96MX3;E9PQ92;E9PJ50 ZNF48 Zinc finger protein 48 yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 73.045 65.65 3 0.0036246 3 51327 20150910_Q1_SA_NiHu_Masterprac_group15_C 50.305 37.157 18269000 2444800 2603400 3229500 1962300 4215400 3814000 8944 1408 8826 39642;39643;39644;39645;39646;39647 26199;26200;26201 26201 3 WGTLTDCVVMRDPQTK Unmodified 1905.9077 0.90770288 371;955 E7EWI9;E7ERJ4;P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 3 2 132.61 122.05 2;3 8.76E-51 9 83497 20150910_Q1_SA_NiHu_Masterprac_group13_C 124.25 84.622 904080000 116070000 79554000 126770000 100170000 162500000 319000000 8945 371;955 8827 39648;39649;39650;39651;39652;39653;39654;39655;39656;39657;39658 26202;26203;26204;26205;26206;26207;26208;26209;26210 26204 9 WLAEPNCVRR Unmodified 1299.6506 0.65062398 1308 Q8N8A6 DDX51 ATP-dependent RNA helicase DDX51 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 95.938 88.008 3 0.014444 2 59539 20150910_Q1_SA_NiHu_Masterprac_group10_B 58.23 58.23 8353800 578210 1187600 641810 772530 2702100 2471500 8946 1308 8828 39659;39660;39661;39662;39663;39664 26211;26212 26212 2 WLQDNLTLRK Unmodified 1285.7143 0.71427009 1362 Q92878-2;Q92878;Q92878-3 RAD50 DNA repair protein RAD50 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 131.37 115.68 3 0.025739 1 76973 20150910_Q1_SA_NiHu_Masterprac_group10_C 51.276 32.145 6605000 6605000 0 0 0 0 0 8947 1362 8829 39665 26213 26213 1 WMEEQAQSLIDK Unmodified 1476.6919 0.69187967 811 P09234 SNRPC U1 small nuclear ribonucleoprotein C yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 132.7 132.7 2 0.0015674 1 85715 20150910_Q1_SA_NiHu_Masterprac_group13_B 90.689 61.139 4702600 0 0 0 4702600 0 0 8948 811 8830 39666 26214 26214 1 WMPFTNPARK Unmodified 1246.6281 0.62809762 1198 Q5TG40;Q9NPF5;Q5TG37;Q5TG38;Q5TG36;Q5TG39 DMAP1 DNA methyltransferase 1-associated protein 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 125.14 120.38 3 0.022763 1 81628 20150910_Q1_SA_NiHu_Masterprac_group15_B 52.49 22.746 1279100 0 0 0 0 0 1279100 8949 1198 8831 39667 26215 26215 1 WNENVQYLSEDR Unmodified 1551.6954 0.69538514 725 O43929;B7Z632;B7Z3D0;F5H069 ORC4;ORC4L Origin recognition complex subunit 4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 127.42 124.63 2 0.003546 1 79813 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.352 44.338 2396300 0 490240 0 0 0 1906000 8950 725 8832 39668;39669 26216 26216 1 WNQDTMEQK Unmodified 1178.5026 0.50262234 1141 Q15637-6;Q15637-4;Q15637-3;Q15637-2;Q15637;Q14820;F8WEV5 SF1 Splicing factor 1 no no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 66.525 59.415 2 0.0097071 2 47194 20150910_Q1_SA_NiHu_Masterprac_group15_C 99.788 70.021 17208000 1115300 1761300 1273500 937770 5059000 7060700 8951 1141 8833 39670;39671;39672;39673;39674;39675 26217;26218 26218 2 WQQFNNR Unmodified 991.46241 0.4624125 751 O75940 SMNDC1 Survival of motor neuron-related-splicing factor 30 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 69.753 65.091 2 0.016461 1 45379 20150910_Q1_SA_NiHu_Masterprac_group15_B 108.98 108.98 2918300 585160 0 0 0 0 2333100 8952 751 8834 39676;39677 26219 26219 1 WQYCGAPDGSQR Unmodified 1423.5939 0.59389696 1475 Q9GZS1-2;B4DW33 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 91.678 84.198 2 0.0017988 5 57622 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.283 75.492 5172900 0 766880 517650 221000 1565000 2102400 8953 1475 8835 39678;39679;39680;39681;39682 26220;26221;26222;26223;26224 26221 5 WRPGDADGTDCTSIGTIEQK Unmodified 2205.9961 0.99606019 1447 Q9BTC0;Q9BTC0-1;Q9BTC0-2;Q9BTC0-3 DIDO1 Death-inducer obliterator 1 yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 127.97 113.94 3 4.0826E-101 3 76150 20150910_Q1_SA_NiHu_Masterprac_group10_C 135.49 106.94 14996000 6258800 0 4172800 0 1315000 3249300 8954 1447 8836 39683;39684;39685;39686 26225;26226;26227 26227 3 WSATSPHVPK Unmodified 1108.5665 0.56654322 295 CON__P06868 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 2 1 1 1 1 81.097 74.939 2 0.010869 2 51931 20150910_Q1_SA_NiHu_Masterprac_group10_B 72.2 54.688 33611000 10638000 6394200 0 2957800 6482400 7138800 + 8955 295 8837 39687;39688;39689;39690;39691;39692 26228;26229 26228 2 WTHDKYQGDGIVEDEEETMENNEEK Unmodified 3024.2567 0.25670415 1563;452 Q9NYF8-2;Q9NYF8;Q9NYF8-4;H0YF14;Q9NYF8-3;E9PK91;H0YF63 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 131.2 115.51 4 0.00061779 1 76786 20150910_Q1_SA_NiHu_Masterprac_group10_C 52.754 49.387 5493800 5493800 0 0 0 0 0 8956 1563;452 8838 39693 26230 26230 1 WTPVGPAPSTSQSQK Unmodified 1569.7787 0.77872084 1592 Q9UHB7;Q9UHB7-2;Q9UHB7-3;C9JCE0 AFF4 AF4/FMR2 family member 4 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 1 100.33 93.073 2 0.0024311 3 63046 20150910_Q1_SA_NiHu_Masterprac_group10_C 66.246 37.175 23112000 3900800 6032800 2222000 3066400 2842500 5048000 8957 1592 8839 39694;39695;39696;39697;39698;39699;39700 26231;26232;26233 26233 3 WTSQHSNTQTLGK Unmodified 1486.7165 0.71645494 1233 Q6PKG0-3;Q6PKG0 LARP1 La-related protein 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 52.001 46.145 3 0.0018598 1 33267 20150910_Q1_SA_NiHu_Masterprac_group15_B 69.03 52.257 3870300 0 1001200 854220 484020 337110 1193700 8958 1233 8840 39701;39702;39703;39704;39705 26234 26234 1 WVGDLPNGRVCP Unmodified 1368.6609 0.66085431 543 F8VV13;Q96DR8 MUCL1 Mucin-like protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.8 131.19 2 0.0047268 1 84673 20150910_Q1_SA_NiHu_Masterprac_group10_B 82.505 57.31 10061000 0 10061000 0 0 0 0 8959 543 8841 39706 26235 26235 1 WVHAEMVNKNSELK Unmodified 1683.8403 0.84027524 922 P46063;F8WA66;F8WD97 RECQL ATP-dependent DNA helicase Q1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 93.587 85.315 3 0.024471 1 63192 20150910_Q1_SA_NiHu_Masterprac_group15_C 43.594 23.358 2290400 0 0 0 391060 1899400 0 8960 922 8842 39707;39708 26236 26236 1 WYCQMCQK Unmodified 1202.4671 0.46710523 136 B4DX32;O60870 KIN DNA/RNA-binding protein KIN17 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 86.383 78.771 2 0.014193 2 59103 20150910_Q1_SA_NiHu_Masterprac_group15_C 89.296 84.197 9905500 233790 972610 1212700 1002800 2305700 4178000 8961 136 8843 39709;39710;39711;39712;39713;39714 26237;26238 26237 2 YAALSDQGLDIK Unmodified 1292.6612 0.66123147 1343 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-5;Q8WX93-4;Q8WX93-7 PALLD Palladin yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 131.1 128.32 2 0.0018284 2 83498 20150910_Q1_SA_NiHu_Masterprac_group10_B 83.137 43.289 32621000 0 22705000 0 0 0 9915800 8962 1343 8844 39715;39716 26239;26240 26240 2 YACGLWGLSPASRK Unmodified 1564.782 0.78203208 1141;674;664 H7C561;Q15637-6;H7C0N4 SF1 Splicing factor 1 no no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 2 1 132.64 123.95 2;3 1.5681E-55 5 81746 20150910_Q1_SA_NiHu_Masterprac_group15_C 128.21 108.93 73796000 18737000 10996000 15361000 15228000 13474000 0 8963 674;1141;664 8845 39717;39718;39719;39720;39721;39722 26241;26242;26243;26244;26245 26243 5 YAFELVDK Unmodified 983.4964 0.49639797 1626 Q9UQR1 ZNF148 Zinc finger protein 148 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 131.62 131.32 2 0.007944 1 84404 20150910_Q1_SA_NiHu_Masterprac_group10_B 104.06 65.094 14126000 0 13071000 0 1055700 0 0 8964 1626 8846 39723;39724 26246 26246 1 YAGGNPVCVRPTPK Unmodified 1514.7664 0.76638202 1124 Q15004;H0YMA4;H0YKX3 KIAA0101 PCNA-associated factor yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 1 2 1 2 82.384 73.436 2;3 0.0024465 5 50772 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.966 35.341 54898000 2930200 1516700 9847600 0 6919500 33684000 8965 1124 8847 39725;39726;39727;39728;39729;39730;39731;39732 26247;26248;26249;26250;26251 26249 5 YALTGDEVK Unmodified 994.49713 0.49712625 993 P62701;Q8TD47;A6NH36;C9JEH7;P22090;C9JQ55 RPS4X;RPS4Y2;RPS4Y1;RPS4XP21 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 86.71 79.082 2 0.030559 1 60909 20150910_Q1_SA_NiHu_Masterprac_group13_C 64.711 36.015 5812500 687280 436830 545350 525590 2139400 1478000 8966 993 8848 39733;39734;39735;39736;39737;39738 26252 26252 1 YALTGDEVKK Unmodified 1122.5921 0.59208927 993 P62701;Q8TD47;A6NH36;C9JEH7;P22090;C9JQ55 RPS4X;RPS4Y2;RPS4Y1;RPS4XP21 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 69.437 61.6 2 0.00032318 1 48548 20150910_Q1_SA_NiHu_Masterprac_group15_C 107.21 54.716 2821300 563910 0 0 500020 1757400 0 8967 993 8849 39739;39740;39741 26253 26253 1 YALYDASFETK Unmodified 1306.6081 0.60813326 980 P60981;P60981-2;F6RFD5 DSTN Destrin yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 131.92 131.32 2 0.034276 1 84751 20150910_Q1_SA_NiHu_Masterprac_group10_B 67.749 36.681 6039700 0 6039700 0 0 0 0 8968 980 8850 39742 26254 26254 0 YALYDATYETK Unmodified 1336.6187 0.61869795 461 E9PP50;P23528;G3V1A4;E9PK25;E9PQB7;E9PLJ3;G3V5P4;Q9Y281 CFL1;CFL2 Cofilin-1;Cofilin-2 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 121.91 112.45 2 4.2677E-55 6 76597 20150910_Q1_SA_NiHu_Masterprac_group15_B 139.31 115.58 58046000 5490300 9940600 14118000 2258400 2973000 23266000 8969 461 8851 39743;39744;39745;39746;39747;39748 26255;26256;26257;26258;26259;26260 26257 6 YALYDATYETKESK Unmodified 1680.7883 0.78828248 461 E9PP50;P23528;G3V1A4;E9PK25;E9PQB7;E9PLJ3;G3V5P4;Q9Y281 CFL1;CFL2 Cofilin-1;Cofilin-2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 106.93 98.964 2 0.0038784 2 67490 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.972 58.979 4400600 0 374190 1024200 386520 859080 1756600 8970 461 8852 39749;39750;39751;39752;39753 26261;26262 26262 2 YALYDATYETKESKK Unmodified 1808.8832 0.88324549 461 E9PP50;P23528;G3V1A4;E9PK25;E9PQB7;E9PLJ3;G3V5P4;Q9Y281 CFL1;CFL2 Cofilin-1;Cofilin-2 yes no 0 0 2 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 94.771 86.892 3 0.024363 2 64310 20150910_Q1_SA_NiHu_Masterprac_group15_C 49.298 27.412 4871800 1429600 376810 1021800 627440 558790 857320 8971 461 8853 39754;39755;39756;39757;39758;39759 26263;26264 26264 2 YASETLQAQSEEAR Unmodified 1581.7271 0.7270792 1610 Q9ULR0;Q9ULR0-2;Q9ULR0-1 ISY1 Pre-mRNA-splicing factor ISY1 homolog yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 78.834 71.915 2 6.0855E-05 3 49820 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.712 62.899 2492800 0 508730 731840 0 0 1252200 8972 1610 8854 39760;39761;39762 26265;26266;26267 26266 3 YASFQVENDQER Unmodified 1484.6532 0.65318598 354 E7EP00;G5EA31;P53992 SEC24C Protein transport protein Sec24C yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 90.411 88.454 2 0.0061915 1 60573 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.091 52.447 838190 0 0 0 0 0 838190 8973 354 8855 39763 26268 26268 1 YASNLPGSLLKEQK Unmodified 1546.8355 0.83550744 124 B4DSN4;Q8NHM5-4;Q8NHM5-2;E7ET57;Q8NHM5-3;E7EML5;Q8NHM5 KDM2B Lysine-specific demethylase 2B yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 131.28 115.59 3 0.027637 1 76836 20150910_Q1_SA_NiHu_Masterprac_group10_C 42.317 7.5487 3497400 3497400 0 0 0 0 0 8974 124 8856 39764 26269 26269 1 YAVQICK Unmodified 880.44767 0.44767364 868 P23458 JAK1 Tyrosine-protein kinase JAK1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 84.671 75.922 2 0.036116 1 52426 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.359 36.616 1635100 0 0 0 0 433520 1201600 8975 868 8857 39765;39766 26270 26270 1 YCPICDVQVHK Unmodified 1417.6482 0.64824072 893 Q5T8Z5;Q5T8Z6;Q5T8Z4;Q5T8Z1;P35226;Q5T8Z2;E9PC92 BMI1 Polycomb complex protein BMI-1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 100.36 90.857 3 0.00025994 1 62148 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.04 84.64 6128200 0 0 0 0 2523800 3604300 8976 893 8858 39767;39768 26271 26271 1 YCQYAFDLK Unmodified 1206.5379 0.53794521 385 E7EUB6;Q9BYG6;Q13485 SMAD4 Mothers against decapentaplegic homolog 4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 130.81 130.21 2 1.2787E-11 1 83627 20150910_Q1_SA_NiHu_Masterprac_group10_B 119.75 105.3 18795000 0 18795000 0 0 0 0 8977 385 8859 39769 26272 26272 1 YCVEEEEK Unmodified 1084.4383 0.43829074 90 P78347-2;P78347-4;P78347-3;B4DH52;P78347;Q86U51;C9J6M0 GTF2I General transcription factor II-I yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 50.526 47.917 2 0.02554 1 34472 20150910_Q1_SA_NiHu_Masterprac_group10_B 75.043 57.947 572860 0 572860 0 0 0 0 8978 90 8860 39770 26273 26273 1 YDENLMK Unmodified 911.40587 0.4058684 39 Q7Z5J4-3;E7EVZ3;Q7Z5J4;A8MTC3;Q7Z5J4-2;C9JWB0;A8MXE8;Q7Z5J4-4;E7ETW1 RAI1 Retinoic acid-induced protein 1 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 78.415 69.967 2 0.015986 2 48867 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.296 35.091 9138200 0 0 3843100 1013800 1229100 3052200 8979 39 8861 39771;39772;39773;39774 26274;26275 26275 2 YDGIILPGK Unmodified 974.54368 0.54368251 998 P62913;P62913-2 RPL11 60S ribosomal protein L11 yes no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 127.86 122.03 2 0.0064746 4 84306 20150910_Q1_SA_NiHu_Masterprac_group15_B 96.034 66.864 33560000 0 3545700 0 4430500 9912300 15671000 8980 998 8862 39775;39776;39777;39778 26276;26277;26278;26279 26277 4 YDLILDEQAEDSK Unmodified 1537.7148 0.71478318 1339 Q8WUA2 PPIL4 Peptidyl-prolyl cis-trans isomerase-like 4 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 131.73 131.73 2 0.0014137 1 84707 20150910_Q1_SA_NiHu_Masterprac_group13_B 89.26 58.924 3622100 0 0 0 3622100 0 0 8981 1339 8863 39779 26280 26280 1 YDSCCVIDK Unmodified 1158.4685 0.46854502 821 P10827-2;P10827-4;P10827-3;P10827 THRA Thyroid hormone receptor alpha yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 66.777 64.695 2 0.006833 1 45027 20150910_Q1_SA_NiHu_Masterprac_group15_B 90.15 57.338 2149400 0 678560 0 0 0 1470900 8982 821 8864 39780;39781 26281 26281 1 YDSLLEQGLVEAALVSK Unmodified 1833.9724 0.97239485 779 O96028-5;O96028-3;O96028;O96028-6;D6R9V2;D6RIS1;O96028-7 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 134.09 134.09 2 5.25E-239 1 87293 20150910_Q1_SA_NiHu_Masterprac_group13_B 168.08 127.84 40120000 0 0 0 40120000 0 0 8983 779 8865 39782 26282 26282 1 YEAAGEAVKTLKK Unmodified 1406.7769 0.77692993 578 O15226;G3V1N1 NKRF NF-kappa-B-repressing factor yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 72.97 64.883 3 0.020459 1 45271 20150910_Q1_SA_NiHu_Masterprac_group13_B 59.155 35.479 2132500 1083900 0 503070 545600 0 0 8984 578 8866 39783;39784;39785 26283 26283 1 YEALQTFAR Unmodified 1097.5506 0.55055881 707 O15525;O60675 MAFG;MAFK Transcription factor MafG;Transcription factor MafK yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 119.34 111.46 2 0.022306 1 78240 20150910_Q1_SA_NiHu_Masterprac_group15_C 68.557 37.136 10062000 1655800 764980 0 3950300 685250 3005200 8985 707 8867 39786;39787;39788;39789;39790 26284 26284 1 YEDTFLESEEIGTK Unmodified 1659.7516 0.75156262 769 O95243-2 MBD4 Methyl-CpG-binding domain protein 4 no no 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 133.08 130.6 2 1.7581E-13 2 85877 20150910_Q1_SA_NiHu_Masterprac_group13_B 106.42 75.275 203140000 0 0 0 6788800 0 196350000 8986 769 8868 39791;39792 26285;26286 26285 2 YEEIVKEVSTYIKK Unmodified 1727.9346 0.93455278 1006 Q5VTE0;P68104;Q6IQ15;F8W6I0 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 132.73 132.73 3 0.017784 1 85742 20150910_Q1_SA_NiHu_Masterprac_group13_B 78.529 51.997 0 0 0 0 0 0 0 8987 1006 8869 39793 26287 26287 1 YEELQITAGR Unmodified 1178.5932 0.5931519 789;788 P04264;CON__P04264;P04259;F5H6G5 KRT1;KRT6B Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 6B no no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 112.29 103.24 2 8.6523E-116 5 68087 20150910_Q1_SA_NiHu_Masterprac_group13_B 164.33 84.846 51176000 1777100 14745000 15507000 7358400 3374200 8414500 + 8988 789;788 8870 39794;39795;39796;39797;39798;39799 26288;26289;26290;26291;26292 26288 5 YEELQITAGRHGDSVR Unmodified 1829.902 0.90202387 789 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching 2 2 2 2 2 95.585 88.005 3;4 0.0068883 3 59718 20150910_Q1_SA_NiHu_Masterprac_group13_B 47.301 37.387 34756000 0 11041000 12899000 4052300 2783500 3980500 + 8989 789 8871 39800;39801;39802;39803;39804;39805;39806;39807;39808;39809 26293;26294;26295 26293 3 YEELQITAGRHGDSVRNSK Unmodified 2159.0719 0.07194275 789 P04264;CON__P04264 KRT1 Keratin, type II cytoskeletal 1 yes no 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 3 80.787 74.236 3;4;5 0.0004392 5 56647 20150910_Q1_SA_NiHu_Masterprac_group15_C 65.231 55.318 54044000 0 13197000 22697000 7014800 2683200 8452100 + 8990 789 8872 39810;39811;39812;39813;39814;39815;39816;39817;39818;39819;39820;39821 26296;26297;26298;26299;26300 26300 5 YEELQQTAGR Unmodified 1193.5677 0.56766543 299 P13647;CON__P13647;E7EU87;CON__Q5XQN5;CON__Q922U2;H0YI76;H0YIN9 KRT5 Keratin, type II cytoskeletal 5 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 62.349 57.561 2 0.0090012 2 46682 20150910_Q1_SA_NiHu_Masterprac_group13_C 77.062 44.733 2188200 0 543160 797000 421140 0 426890 + 8991 299 8873 39822;39823;39824;39825 26301;26302 26301 2 YEELQVTVGR Unmodified 1192.6088 0.60880197 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 115.91 108.26 2 0.016893 1 78085 20150910_Q1_SA_NiHu_Masterprac_group13_C 66.267 43.239 5474500 198690 1294800 1523200 1258600 0 1199200 + 8992 302 8874 39826;39827;39828;39829;39830 26303 26303 1 YEHKEIEYVETVTSR Unmodified 1881.9109 0.91085723 1595 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 116.77 107.05 3 0.024873 1 73463 20150910_Q1_SA_NiHu_Masterprac_group15_B 41.088 31.614 3040600 0 0 770780 524000 460210 1285600 8993 1595 8875 39831;39832;39833;39834 26304 26304 1 YEHKEIEYVETVTSRQSEIQK Unmodified 2595.2817 0.28166075 1595 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 130.05 112.06 4 0.0085125 1 80716 20150910_Q1_SA_NiHu_Masterprac_group13_C 40.968 26.396 2102900 0 0 2102900 0 0 0 8994 1595 8876 39835 26305 26305 1 YEIEETETVTK Unmodified 1340.6347 0.63474195 396 Q05682-5;E9PGZ1;Q05682-4;F5H1Z9;E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;C9J813 CALD1 Caldesmon yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 97.308 89.667 2 0.0051197 3 60869 20150910_Q1_SA_NiHu_Masterprac_group10_B 73.632 73.632 7392000 0 1916100 1539800 619400 1482300 1834400 8995 396 8877 39836;39837;39838;39839;39840 26306;26307;26308 26308 3 YELGRPAANTK Unmodified 1218.6357 0.63568542 985 Q5JR95;P62241 RPS8 40S ribosomal protein S8 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 60.561 52.992 3 0.017384 1 39328 20150910_Q1_SA_NiHu_Masterprac_group10_C 57.785 30.357 563150 563150 0 0 0 0 0 8996 985 8878 39841 26309 26309 1 YELISETGGSHDK Unmodified 1434.6627 0.66268803 243 Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;C9JFV5;Q12906;G5E9M5;B4DFG4 ILF3 Interleukin enhancer-binding factor 3 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 84.248 76.751 2;3 0.00018026 10 52889 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.402 81.969 27550000 1459800 6605300 3536000 2129400 5232900 8586300 8997 243 8879 39842;39843;39844;39845;39846;39847;39848;39849;39850;39851;39852 26310;26311;26312;26313;26314;26315;26316;26317;26318;26319 26313 10 YELQLANPK Unmodified 1074.571 0.5709599 1224 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 117.98 107.53 2 0.0062431 1 73568 20150910_Q1_SA_NiHu_Masterprac_group15_B 92.838 73.706 3809700 0 0 0 0 985770 2824000 8998 1224 8880 39853;39854 26320 26320 1 YELQQLEGSSDR Unmodified 1423.6579 0.657937 1362 Q92878-2;Q92878;Q92878-3;E7EN38;E7ESD9 RAD50 DNA repair protein RAD50 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 116.25 106.98 2 4.0931E-07 2 70468 20150910_Q1_SA_NiHu_Masterprac_group10_B 101.56 79.005 2545800 0 1632100 0 0 913710 0 8999 1362 8881 39855;39856 26321;26322 26322 2 YETLVGTIGK Unmodified 1079.5863 0.58627561 1427 Q99547;H3BSB3;H3BNT4 MPHOSPH6 M-phase phosphoprotein 6 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 123.99 121.26 2 0.012231 1 82122 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.412 55.732 2249300 0 1108900 0 0 0 1140400 9000 1427 8882 39857;39858 26323 26323 1 YFEGVSPK Unmodified 925.45453 0.45453316 1012 P78527;E7EUY0;P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit yes no 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 87.73 80.068 2 0.009317 3 54913 20150910_Q1_SA_NiHu_Masterprac_group15_B 101.43 72.054 64112000 4196400 5119700 6539900 5447300 13355000 29454000 9001 1012 8883 39859;39860;39861;39862;39863;39864 26324;26325;26326 26325 3 YFEQGKGTCPFGSK Unmodified 1604.7293 0.72932781 114 B4DPR4;C9J494;Q9H000 MKRN2 Probable E3 ubiquitin-protein ligase makorin-2 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 99.536 90.036 2 0.0028676 2 66219 20150910_Q1_SA_NiHu_Masterprac_group15_C 75.02 53.206 3437600 0 0 0 0 911100 2526500 9002 114 8884 39865;39866 26327;26328 26327 2 YFHPPAHLQAK Unmodified 1307.6775 0.67749065 263;764 Q9NR56-3;Q9NR56-4;E9PBW7;Q9NR56-6;C9JP00;Q9NR56-2;Q9NR56-5;Q9NR56;H7C4T5;Q86VM6;C9JCX1;H7C4Y1;O95205;Q5VZF2-3;Q5VZF2-2;Q5VZF2 MBNL1;MBLL;MBNL2 Muscleblind-like protein 1;Muscleblind-like protein 2 no no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 84.742 75.648 3 1.4236E-06 3 52038 20150910_Q1_SA_NiHu_Masterprac_group10_C 106.88 106.88 15094000 2334800 2902400 349640 0 5067500 4439300 9003 263;764 8885 39867;39868;39869;39870;39871 26329;26330;26331 26331 3 YFQLKNVTEHLK Unmodified 1518.8195 0.81946344 1213 Q5VZL5-2;Q5VZL5;H7C1I7;Q5VZL5-3;Q5VZL5-4 ZMYM4 Zinc finger MYM-type protein 4 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 128.28 125.8 3 0.026573 1 85386 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.28 20.065 1605200 0 0 0 384260 0 1220900 9004 1213 8886 39872;39873 26332 26332 1 YFRNYMSEHLLK Unmodified 1599.7868 0.78678311 962 P53350;B4E083 PLK1 Serine/threonine-protein kinase PLK1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 129.59 124.63 4 0.02676 1 84280 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.448 31.783 4410100 0 0 0 0 0 4410100 9005 962 8887 39874 26333 26333 1 YFSSMAEFLKVKGEK Unmodified 1762.8964 0.89639314 1342 Q8WWY3;E7EVX8 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 133.23 133.23 4 0.0003121 1 86309 20150910_Q1_SA_NiHu_Masterprac_group13_B 85.45 62.09 8037100 0 0 0 8037100 0 0 9006 1342 8888 39875 26334 26334 1 YFTCQCGSEK Unmodified 1278.5009 0.50090778 7 Q96KQ7-2;B0UZY3;Q96KQ7;B0UZY0;A2ABF8;B0UZY1;A2ABF9;H0YIM0;H0YHA9;A2BED6;A2BED7 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 59.899 51.978 2 0.035516 2 37293 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.084 44.332 3153700 0 637570 438010 0 639000 1439100 9007 7 8889 39876;39877;39878;39879 26335;26336 26336 2 YFTCQCGSEKCK Unmodified 1566.6265 0.626519 7 Q96KQ7-2;B0UZY3;Q96KQ7;B0UZY0;A2ABF8;B0UZY1;A2ABF9;H0YIM0;H0YHA9;A2BED6;A2BED7 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 49.547 43.932 3 0.040313 1 31639 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.614 40.897 3126100 0 680890 513050 343970 652760 935440 9008 7 8890 39880;39881;39882;39883;39884 26337 26337 1 YGEPGEVFINK Unmodified 1251.6136 0.61355299 865 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 130.96 115.27 2 0.0051197 1 76560 20150910_Q1_SA_NiHu_Masterprac_group10_C 73.632 40.574 17281000 17281000 0 0 0 0 0 9009 865 8891 39885 26338 26338 1 YGEPGEVFINKGK Unmodified 1436.73 0.72997974 865 P23246;P23246-2 SFPQ Splicing factor, proline- and glutamine-rich yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 108.36 99.546 2;3 8.1157E-10 7 66028 20150910_Q1_SA_NiHu_Masterprac_group10_B 106.26 87.921 51007000 8016700 6630200 5183800 5446400 13714000 12016000 9010 865 8892 39886;39887;39888;39889;39890;39891;39892;39893;39894;39895;39896;39897 26339;26340;26341;26342;26343;26344;26345 26342 7 YGETCFPK Unmodified 1000.4324 0.43241751 844 P17028 ZNF24 Zinc finger protein 24 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 80.204 78.221 2 0.00087146 1 53841 20150910_Q1_SA_NiHu_Masterprac_group15_B 85.161 70.296 1478300 0 330780 0 0 0 1147600 9011 844 8893 39898;39899 26346 26346 0 YGEYFPGTGDLR Unmodified 1373.6252 0.62518031 1086;1358 Q92769;B3KRS5;Q13547;Q5TEE2;F5GXM1 HDAC2;HDAC1 Histone deacetylase 2;Histone deacetylase;Histone deacetylase 1 no no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 132.64 129.86 2 4.4185E-05 2 87961 20150910_Q1_SA_NiHu_Masterprac_group15_B 100.04 73.284 50401000 0 12759000 0 0 0 37642000 9012 1358;1086 8894 39900;39901 26347;26348 26347 2 YGEYFPGTGDLRDIGAGKGK Unmodified 2100.0276 0.027618319 1086;1358 Q92769;B3KRS5;Q13547;Q5TEE2;F5GXM1 HDAC2;HDAC1 Histone deacetylase 2;Histone deacetylase;Histone deacetylase 1 no no 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS 2 2 132.03 129.55 3;4 0.00078259 4 84850 20150910_Q1_SA_NiHu_Masterprac_group13_B 62.916 42.535 511390000 0 0 0 24927000 0 486460000 9013 1358;1086 8895 39902;39903;39904;39905 26349;26350;26351;26352 26350 4 YGEYICDKTDEDVCSLECK Unmodified 2382.9654 0.96541327 190 B7Z5N6;Q5T1V6-2;Q5T1V6;Q5T1V5 DDX59 Probable ATP-dependent RNA helicase DDX59 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 130.42 125.45 3 0.00081377 1 85203 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.589 59.752 4392100 0 0 0 0 0 4392100 9014 190 8896 39906 26353 26353 1 YGEYICDKTDEDVCSLECKAK Unmodified 2582.0975 0.097490077 190 B7Z5N6;Q5T1V6-2;Q5T1V6;Q5T1V5 DDX59 Probable ATP-dependent RNA helicase DDX59 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 131.04 115.35 4 1.4796E-05 1 76647 20150910_Q1_SA_NiHu_Masterprac_group10_C 62.739 52.391 22687000 22687000 0 0 0 0 0 9015 190 8897 39907 26354 26354 1 YGIPEPPEPK Unmodified 1125.5706 0.57062555 620 Q59HE6;H0YGC0;P52756;P98175-4;P98175-3;P98175-2;P98175 RBM5;RBM10 RNA-binding protein 5;RNA-binding protein 10 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 116.5 111.93 2 0.035516 1 76464 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.084 46.39 1028900 0 0 0 0 0 1028900 9016 620 8898 39908 26355 26355 1 YGLIYHASLVGQTSPK Unmodified 1732.9148 0.91482039 1640 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 131.5 131.5 3 2.7227E-10 1 84476 20150910_Q1_SA_NiHu_Masterprac_group13_B 95.755 71.874 0 0 0 0 0 0 0 9017 1640 8899 39909 26356 26356 1 YGLIYHASLVGQTSPKHKGK Unmodified 2183.1851 0.18512201 1640 Q9Y2X3 NOP58 Nucleolar protein 58 yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 103.23 94.008 4 0.00015866 3 64062 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.564 65.998 23404000 0 0 3027600 7132200 9066800 4177900 9018 1640 8900 39910;39911;39912;39913 26357;26358;26359 26359 3 YGLSPGPVTESTRPVYLK Unmodified 1963.0415 0.041477469 1638 Q9Y2U8 LEMD3 Inner nuclear membrane protein Man1 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 132.16 123.65 3 1.6572E-58 4 84630 20150910_Q1_SA_NiHu_Masterprac_group10_B 121.45 73.055 99173000 49441000 33273000 0 9193900 7265900 0 9019 1638 8901 39914;39915;39916;39917 26360;26361;26362;26363 26362 4 YGLSPGPVTESTRPVYLKK Unmodified 2091.1364 0.13644049 1638 Q9Y2U8 LEMD3 Inner nuclear membrane protein Man1 yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 124.51 121.73 4 0.034268 2 78023 20150910_Q1_SA_NiHu_Masterprac_group10_B 33.769 27.333 3767200 0 1600300 0 0 0 2166900 9020 1638 8902 39918;39919 26364;26365 26365 1 YGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSK Oxidation (M) 3799.7981 0.79808266 838 P14866;A6NIT8 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes no 0 1 0 By matching By matching By matching By matching By matching By MS/MS 1 133.55 128.59 4 1.2923E-64 1 88641 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.141 89.162 95221000 0 0 0 0 0 95221000 9021 838 8903 39920 26366 26366 89 1 YGQHPPDAVDEPQMLTNEK Unmodified 2167.9844 0.98443288 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 116.8 112.24 3 0.0057732 1 76573 20150910_Q1_SA_NiHu_Masterprac_group15_B 44.054 28.275 2272600 0 0 0 0 0 2272600 9022 487 8904 39921 26367 26367 1 YGRLADPAVTDFPAGK Unmodified 1676.8522 0.85222014 184 B7Z367;Q9UL40;D6RJ07;Q9UL40-2;B7Z4J8 ZNF346 Zinc finger protein 346 yes no 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 2 1 128.8 127.41 3 1.451E-07 5 85406 20150910_Q1_SA_NiHu_Masterprac_group15_B 94.339 77.086 19489000 0 4951300 0 2921300 0 11617000 9023 184 8905 39922;39923;39924;39925 26368;26369;26370;26371;26372 26371 5 YGRVGDVYIPR Unmodified 1293.683 0.68296996 1441;1026 Q9BRL6-2;Q9BRL6;Q8NAK9;Q01130;F5GYB8;H0YG49 SRSF8;SRSF2;SFRS2 Serine/arginine-rich splicing factor 8;Serine/arginine-rich splicing factor 2 no no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 114.9 107.5 3 0.011288 5 76027 20150910_Q1_SA_NiHu_Masterprac_group15_C 63.624 44.667 24534000 6047000 1544900 0 4905400 9182100 2854700 9024 1441;1026 8906 39926;39927;39928;39929;39930 26373;26374;26375;26376;26377 26376 5 YGSGGGSKGGSISGGGYGSGGGK Unmodified 1889.8504 0.85038223 302 P35908;CON__P35908 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 50.69 46.112 3 0.0099511 2 32378 20150910_Q1_SA_NiHu_Masterprac_group13_B 38.724 23.433 1595600 0 0 982120 404900 0 208540 + 9025 302 8907 39931;39932;39933 26378;26379 26379 2 YGTFVNEEK Unmodified 1085.5029 0.50293991 736 O60934;F5H3R2;E5RGU1 NBN Nibrin yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 81.118 73.573 2 4.001E-29 5 57467 20150910_Q1_SA_NiHu_Masterprac_group13_C 131.62 95.998 41022000 4383900 4783600 5950500 5336800 9512700 11054000 9026 736 8908 39934;39935;39936;39937;39938;39939 26380;26381;26382;26383;26384 26380 5 YGVNPGPIVGTTR Unmodified 1329.7041 0.70409934 913;914 P42166;P42167;P42167-2;G5E972;H0YJH7 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 120.8 111.23 2 0.0014951 6 75978 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.744 48.596 36975000 3967500 6421300 9857900 4745100 716630 11267000 9027 913;914 8909 39940;39941;39942;39943;39944;39945 26385;26386;26387;26388;26389;26390 26388 6 YGVNPGPIVGTTRK Unmodified 1457.7991 0.79906235 913;914 P42166;P42167;P42167-2;G5E972;H0YJH7 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 4 2 2 103.15 94.73 2;3 4.8168E-14 12 63871 20150910_Q1_SA_NiHu_Masterprac_group13_B 96.371 70.39 416120000 56136000 76127000 60078000 31770000 78597000 113410000 9028 913;914 8910 39946;39947;39948;39949;39950;39951;39952;39953;39954;39955;39956;39957;39958;39959;39960 26391;26392;26393;26394;26395;26396;26397;26398;26399;26400;26401;26402 26393 11 YGVQADRVDK Unmodified 1149.5778 0.57783619 1104 Q14247;Q14247-3;Q14247-2;H7C314 CTTN Src substrate cortactin yes no 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 54.136 47.978 2 1.8952E-23 4 34264 20150910_Q1_SA_NiHu_Masterprac_group15_B 128.01 69.316 8698200 1176900 1135400 2403600 830850 877470 2274000 9029 1104 8911 39961;39962;39963;39964;39965;39966 26403;26404;26405;26406 26404 4 YGYTEDPLEVR Unmodified 1340.6248 0.62484596 1118 Q14966-3;Q14966;Q14966-4;Q14966-2;C9JBI6;F5H330 ZNF638 Zinc finger protein 638 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 131.72 126.76 2 0.036283 1 86596 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.685 52.154 10208000 0 0 0 0 0 10208000 9030 1118 8912 39967 26407 26407 0 YHSDDYIKFLR Unmodified 1455.7147 0.71466402 1086 Q13547;Q5TEE2 HDAC1 Histone deacetylase 1 yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 131.54 126.58 3 9.7962E-13 1 86410 20150910_Q1_SA_NiHu_Masterprac_group15_B 114.89 67.908 9538200 0 0 0 0 0 9538200 9031 1086 8913 39968 26408 26408 1 YHTINGHNAEVR Unmodified 1409.68 0.68000985 863 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 46.719 40.15 3 0.021403 1 28501 20150910_Q1_SA_NiHu_Masterprac_group15_B 49.448 49.448 2926300 0 1126800 598600 0 578190 622800 9032 863 8914 39969;39970;39971;39972 26409 26409 1 YHTINGHNAEVRK Unmodified 1537.775 0.77497287 863 P22626;P22626-2 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 34.253 30.873 3 0.0057781 3 21392 20150910_Q1_SA_NiHu_Masterprac_group15_B 54.343 43.084 11035000 1030400 4581100 3921700 730700 0 771380 9033 863 8915 39973;39974;39975;39976;39977 26410;26411;26412 26411 3 YHTINGHNCEVK Unmodified 1470.6674 0.66739625 371;955 E7EWI9;E7ERJ4;P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 2 1 1 1 1 40.052 35.432 2;3 0.020831 3 24737 20150910_Q1_SA_NiHu_Masterprac_group10_B 51.612 34.838 42167000 275690 27005000 134950 7282300 77908 7391100 9034 371;955 8916 39978;39979;39980;39981;39982;39983;39984 26413;26414;26415 26415 3 YHTINGHNCEVKK Unmodified 1598.7624 0.76235927 371;955 E7EWI9;E7ERJ4;P51991-2;P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 no no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 31.196 27.769 3 0.0016503 2 19609 20150910_Q1_SA_NiHu_Masterprac_group10_B 63.966 50.236 3372800 0 1143200 1984300 245260 0 0 9035 371;955 8917 39985;39986;39987 26416;26417 26417 2 YIASVQGSTPSPR Unmodified 1361.6939 0.69392858 945 P49792;E9PGT0;F8WBP7 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 90.244 81.511 2 0.00036453 4 55732 20150910_Q1_SA_NiHu_Masterprac_group15_B 93.766 71.71 17746000 1933000 0 1421900 971830 5093400 8326000 9036 945 8918 39988;39989;39990;39991;39992 26418;26419;26420;26421 26419 4 YIASVQGSTPSPRQK Unmodified 1617.8475 0.84746911 945 P49792;E9PGT0;F8WBP7 RANBP2 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 75.715 67.403 3 0.0026612 1 47010 20150910_Q1_SA_NiHu_Masterprac_group15_B 62.68 24.1 4612400 243340 0 1261300 699300 371880 2036600 9037 945 8919 39993;39994;39995;39996;39997 26422 26422 1 YICDNQDTISSK Unmodified 1442.6348 0.63475872 294 CON__P02769 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 3 4 6 71.976 64.703 2 4.8311E-290 20 45772 20150910_Q1_SA_NiHu_Masterprac_group15_B 190.66 95.841 580240000 60252000 84406000 53506000 41122000 103350000 237600000 + 9038 294 8920 39998;39999;40000;40001;40002;40003;40004;40005;40006;40007;40008;40009;40010;40011;40012;40013;40014;40015;40016;40017;40018;40019;40020 26423;26424;26425;26426;26427;26428;26429;26430;26431;26432;26433;26434;26435;26436;26437;26438;26439;26440;26441;26442 26432 20 YICDNQDTISSKLK Unmodified 1683.8138 0.81378572 294 CON__P02769 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 5 5 3 100.6 92.18 2;3 2.8741E-171 16 68208 20150910_Q1_SA_NiHu_Masterprac_group15_C 162.48 71.28 649320000 68747000 143390000 60912000 55724000 126770000 193780000 + 9039 294 8921 40021;40022;40023;40024;40025;40026;40027;40028;40029;40030;40031;40032;40033;40034;40035;40036;40037;40038;40039;40040 26443;26444;26445;26446;26447;26448;26449;26450;26451;26452;26453;26454;26455;26456;26457;26458 26454 16 YICENQDSISSK Unmodified 1442.6348 0.63475872 293 P02768;CON__P02768-1;E7ESU5;H0YA55;D6RHD5;B7WNR0;P02768-2;C9JKR2 ALB Serum albumin yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 72.886 64.201 2 0.0097741 1 51659 20150910_Q1_SA_NiHu_Masterprac_group13_C 59.155 25.882 3066100 0 284060 1475900 537700 768390 0 + 9040 293 8922 40041;40042;40043;40044 26459 26459 1 YICENQDSISSKLK Unmodified 1683.8138 0.81378572 293 P02768;CON__P02768-1;E7ESU5;H0YA55;D6RHD5;B7WNR0;P02768-2;C9JKR2 ALB Serum albumin yes no 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 95.484 95.484 3 0.034931 1 63959 20150910_Q1_SA_NiHu_Masterprac_group13_B 40.477 14.269 663220 0 0 0 663220 0 0 + 9041 293 8923 40045 26460 26460 1 YIEGLSAESNSISK Unmodified 1496.7359 0.73585297 1260 Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-3;Q86U86-9;Q86U86-2;Q86U86-8;Q86U86 PBRM1 Protein polybromo-1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 117.64 107.18 2 0.0031492 2 73352 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.55 45.048 3487800 0 0 0 0 1147700 2340100 9042 1260 8924 40046;40047 26461;26462 26461 2 YIENMSR Unmodified 911.4171 0.41710179 152 B4E0G4;Q8IWS0;E9PC97;Q5JRC6 PHF6 PHD finger protein 6 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 57.529 53.029 2 0.010326 1 37951 20150910_Q1_SA_NiHu_Masterprac_group15_B 104.21 29.794 2446000 0 717100 0 502810 96474 1129700 9043 152 8925 40048;40049;40050;40051 26463 26463 1 YIGIVKQAGLER Unmodified 1345.7718 0.77178497 958 P52597;B4DKS8 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 3 4 1 117.71 107.67 2;3 0.0018515 8 71464 20150910_Q1_SA_NiHu_Masterprac_group10_C 81.525 62.248 35338000 10496000 3073000 10311000 6307300 3823000 1328200 9044 958 8926 40052;40053;40054;40055;40056;40057;40058;40059;40060;40061;40062;40063;40064;40065 26464;26465;26466;26467;26468;26469;26470;26471 26470 8 YINPAATK Unmodified 876.47052 0.47051757 1079 Q13356;H7C2D2 PPIL2 Peptidyl-prolyl cis-trans isomerase-like 2;Peptidyl-prolyl cis-trans isomerase yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 54.93 52.998 2 0.039944 1 37972 20150910_Q1_SA_NiHu_Masterprac_group15_B 68.224 20.375 1882400 0 972510 0 0 0 909850 9045 1079 8927 40066;40067 26472 26472 1 YIQDFQR Unmodified 968.47158 0.4715802 455 E9PKP7;P17480-2;P17480;E9PMM2 UBTF Nucleolar transcription factor 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 79.407 74.218 2 0.011502 2 51499 20150910_Q1_SA_NiHu_Masterprac_group15_B 91.906 42.548 8137700 0 2480900 739480 871000 0 4046300 9046 455 8928 40068;40069;40070;40071 26473;26474 26473 2 YIQDFQREK Unmodified 1225.6091 0.60913632 455 E9PKP7;P17480-2;P17480;E9PMM2 UBTF Nucleolar transcription factor 1 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 69.286 62.009 3 0.011081 2 48862 20150910_Q1_SA_NiHu_Masterprac_group15_C 83.998 14.187 8910400 1565900 1756200 741750 890580 1990300 1965700 9047 455 8929 40072;40073;40074;40075;40076;40077 26475;26476 26475 2 YISENESPRPSQK Unmodified 1533.7423 0.74233534 755 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 52.218 46.16 3 2.5493E-05 5 33283 20150910_Q1_SA_NiHu_Masterprac_group15_B 97.163 60.59 7742100 367090 1360400 2031000 753160 678520 2552000 9048 755 8930 40078;40079;40080;40081;40082;40083 26477;26478;26479;26480;26481 26479 5 YITASTFAQAR Unmodified 1227.6248 0.62478638 1428 Q99575;E5RK39 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 121.12 110.12 2 0.0074748 1 77537 20150910_Q1_SA_NiHu_Masterprac_group15_C 68.536 46.864 30381000 6487800 0 5082500 3103800 1686700 14020000 9049 1428 8931 40084;40085;40086;40087;40088 26482 26482 1 YIVKNPQAYLNYK Unmodified 1612.8613 0.86132826 1059 Q12789-3;Q12789;H7BYG6;H3BRD0 GTF3C1 General transcription factor 3C polypeptide 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 131.09 130.48 3 0.010489 1 83873 20150910_Q1_SA_NiHu_Masterprac_group10_B 55.258 40.467 6207600 0 6207600 0 0 0 0 9050 1059 8932 40089 26483 26483 1 YKAVSISTEPPTYLREQK Unmodified 2109.1106 0.11061967 592 Q12824-2;Q12824;G5E975;C9JTA6 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 yes no 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 130.28 114.59 3 0.0058436 1 75906 20150910_Q1_SA_NiHu_Masterprac_group10_C 54.073 29.618 2816200 2816200 0 0 0 0 0 9051 592 8933 40090 26484 26484 1 YKQSLDPTVDEVK Unmodified 1520.7722 0.77223848 528 Q8N122-2;F5H7J5;Q8N122 RPTOR Regulatory-associated protein of mTOR yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 94.08 87.914 3 0.0049518 2 59525 20150910_Q1_SA_NiHu_Masterprac_group10_B 61.532 38.676 2699500 155760 602580 1114700 212120 0 614320 9052 528 8934 40091;40092;40093;40094;40095 26485;26486 26486 2 YKVFDAKPSAK Unmodified 1252.6816 0.68157298 236 Q8WVV9-4;C9J9G0;Q8WVV9;Q5JB52;B7WPG3;H7C0J6;H7C464 HNRNPLL;HNRPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 0 0 2 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 66.988 60.029 3 0.015591 1 42213 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.237 40.346 15954000 0 1820200 4865500 780440 3366600 5121000 9053 236 8935 40096;40097;40098;40099;40100 26487 26487 1 YLCASSVGGETLDK Unmodified 1498.6974 0.69735898 1208 Q5VWN6 FAM208B Protein FAM208B yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 112.58 104.68 2 0.0058991 1 70297 20150910_Q1_SA_NiHu_Masterprac_group10_C 55.176 13.092 949700 305270 644430 0 0 0 0 9054 1208 8936 40101;40102 26488 26488 1 YLEEQIGAHRK Unmodified 1342.6993 0.69934831 1324 Q8NEZ4;Q8NEZ4-3;H7BY37;Q8NEZ4-2 KMT2C Histone-lysine N-methyltransferase 2C yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 57.586 56.532 3 0.0052473 1 39961 20150910_Q1_SA_NiHu_Masterprac_group15_B 64.73 47.008 721690 0 0 0 0 0 721690 9055 1324 8937 40103 26489 26489 1 YLGHVEVDESR Unmodified 1302.6204 0.62042929 943 P49757-4;P49757-2;P49757-3;P49757;B1P2N8;B1P2N7;B1P2N6;B1P2N5;G3V4S6;G3V433;G3V3R1 NUMB Protein numb homolog yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 75.055 73.801 3 0.038261 1 51133 20150910_Q1_SA_NiHu_Masterprac_group15_B 59.198 18.471 0 0 0 0 0 0 0 9056 943 8938 40104 26490 26490 1 YLKDVTLQK Unmodified 1106.6336 0.63356015 855 P18621;B4E3C2 RPL17 60S ribosomal protein L17 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 86.463 75.518 2 0.00040371 2 57294 20150910_Q1_SA_NiHu_Masterprac_group15_C 112.36 61.291 10470000 0 0 1405300 2726700 6338200 0 9057 855 8939 40105;40106;40107 26491;26492 26492 2 YLLRRDDDEPGPWTK Unmodified 1859.9166 0.91661131 175 B5ME40;F5GXG0;Q96T88 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 122.05 108.98 4 0.0054364 2 78764 20150910_Q1_SA_NiHu_Masterprac_group13_C 51.643 35.07 5849700 0 0 1627100 0 407680 3814900 9058 175 8940 40108;40109;40110 26493;26494 26493 2 YLMEEDEDAYKK Unmodified 1532.6705 0.67047553 75 B3KTM6;P46777 RPL5 60S ribosomal protein L5 yes no 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 93.956 86.435 3 0.0019013 3 58575 20150910_Q1_SA_NiHu_Masterprac_group10_B 68.536 52.064 5009500 1083000 941720 0 0 1746100 1238700 9059 75 8941 40111;40112;40113;40114 26495;26496;26497 26497 3 YLNEQLYSGPSSAAQR Unmodified 1782.8537 0.8536767 462 E9PPY3;O43159 RRP8 Ribosomal RNA-processing protein 8 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 113 110.17 2 0.0017488 3 75358 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.191 63.773 6591700 0 1415300 0 0 0 5176400 9060 462 8942 40115;40116 26498;26499;26500 26498 3 YLNGLGRLPAK Unmodified 1200.6979 0.69789175 1295 Q8N2W9 PIAS4 E3 SUMO-protein ligase PIAS4 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 2 1 1 2 2 113.65 105.84 2;3 0.0087955 3 72454 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.831 58.365 22583000 0 3499500 827060 282410 2249200 15725000 9061 1295 8943 40117;40118;40119;40120;40121;40122;40123;40124 26501;26502;26503 26503 3 YLPELMAEK Unmodified 1092.5525 0.55253264 1045 Q07666;Q07666-3;Q07666-2;E7ET98;O75525-2;F5H5F6;O75525;Q5VWX1 KHDRBS1;KHDRBS3;KHDRBS2 KH domain-containing, RNA-binding, signal transduction-associated protein 1;KH domain-containing, RNA-binding, signal transduction-associated protein 3;KH domain-containing, RNA-binding, signal transduction-associated protein 2 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 132.5 122.99 2 4.3876E-29 5 84464 20150910_Q1_SA_NiHu_Masterprac_group10_B 131.11 131.11 276140000 14562000 155950000 29452000 18443000 12238000 45493000 9062 1045 8944 40125;40126;40127;40128;40129;40130 26504;26505;26506;26507;26508 26507 5 YLQEEVNINRKK Unmodified 1532.8311 0.83109076 1593 Q9UHD8-3;Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;F5GWR9;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 SEPT9 Septin-9 yes no 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 75.936 68.475 3 0.020606 1 47788 20150910_Q1_SA_NiHu_Masterprac_group10_B 62.633 41.625 5930200 588490 590910 1269100 759170 1325300 1397200 9063 1593 8945 40131;40132;40133;40134;40135;40136 26509 26509 1 YLQGVYQEVGAK Unmodified 1353.6929 0.69286595 1161 Q2TAK8;Q2TAK8-2 MUM1 PWWP domain-containing protein MUM1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 116.11 111.75 2 0.0032602 1 76278 20150910_Q1_SA_NiHu_Masterprac_group15_B 71.176 46.944 3449600 0 0 0 0 0 3449600 9064 1161 8946 40137 26510 26510 1 YLQQAFEK Unmodified 1025.5182 0.51819605 19 A6NF48;Q9Y2X9;F5H1Z5 ZNF281 Zinc finger protein 281 yes no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 90.968 84.992 2 0.0081101 3 57789 20150910_Q1_SA_NiHu_Masterprac_group10_B 103.74 24.026 4319800 759660 657940 0 858920 219050 1824200 9065 19 8947 40138;40139;40140;40141;40142 26511;26512;26513 26512 3 YLQTVQYGVHGNFPR Unmodified 1777.89 0.89000263 1107 Q14527;E7ESN4;F5H3D6 HLTF Helicase-like transcription factor yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 2 130.39 125.42 2;3 9.3095E-43 3 85115 20150910_Q1_SA_NiHu_Masterprac_group15_B 122.46 93.104 27280000 0 0 0 0 0 27280000 9066 1107 8948 40143;40144 26514;26515;26516 26514 3 YLRASMTNLVK Unmodified 1294.7067 0.70674187 227 C9J4N8;Q9HAV4;E7EQK9;H0Y9I3 XPO5 Exportin-5 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 113.97 106.72 3 0.0027711 2 77376 20150910_Q1_SA_NiHu_Masterprac_group13_C 86.114 57.731 7314600 0 0 1677000 701630 0 4936000 9067 227 8949 40145;40146;40147 26517;26518 26518 2 YLRPPNTSLFVR Unmodified 1461.8092 0.80923311 743 O75494-5;Q5JRI1;O75494-4;Q5JRI3;O75494-3;O75494-2;O75494 SRSF10 Serine/arginine-rich splicing factor 10 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 132.54 126.65 2;3 2.2623E-223 5 85395 20150910_Q1_SA_NiHu_Masterprac_group13_B 181.66 164.53 107520000 0 8856500 21755000 12612000 0 64300000 9068 743 8950 40148;40149;40150;40151;40152 26519;26520;26521;26522;26523 26519 5 YLSELAEQPERK Unmodified 1461.7464 0.74635808 1501 Q9H7Z6;Q9H7Z6-2 KAT8 Histone acetyltransferase KAT8 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 93.072 85.644 2;3 8.8174E-14 12 58732 20150910_Q1_SA_NiHu_Masterprac_group15_B 112.94 63.657 48596000 3365200 10732000 7568600 6206000 7963000 12762000 9069 1501 8951 40153;40154;40155;40156;40157;40158;40159;40160;40161;40162;40163;40164;40165 26524;26525;26526;26527;26528;26529;26530;26531;26532;26533;26534;26535 26530 12 YLVLDEADR Unmodified 1092.5451 0.54513908 693 O00571;O00571-2;B4DLU5;B4DXX7;O15523;B4E132;D6RCM4;E9PCD8;Q9NQI0-2;D6RDK4;Q9NQI0 DDX3X;DDX3Y;DDX4 ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX4 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 117.02 111.09 2 0.019579 2 72847 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.056 25.303 24313000 0 5199700 0 2526800 801350 15785000 9070 693 8952 40166;40167;40168;40169 26536;26537 26537 2 YLWLKDCK Unmodified 1124.5689 0.56885141 913 P42166 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 113.65 107.86 2 0.038301 1 78159 20150910_Q1_SA_NiHu_Masterprac_group13_C 87.476 70.946 9062500 0 1580000 1988600 1005900 0 4488000 9071 913 8953 40170;40171;40172;40173 26538 26538 1 YLYEIAR Unmodified 926.48617 0.48616764 294;293 CON__P02769;P02768;CON__P02768-1;E7ESU5;H0YA55;D6RHD5;B7WNR0;H7C013 ALB Serum albumin no no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 3 1 115.44 106.38 2 5.5919E-21 6 69754 20150910_Q1_SA_NiHu_Masterprac_group13_B 132.96 79.25 454950000 331050 54667000 25170000 29506000 163440000 181840000 + 9072 294;293 8954 40174;40175;40176;40177;40178;40179;40180;40181;40182;40183 26539;26540;26541;26542;26543;26544 26539 6 YLYTLVITDKEK Unmodified 1484.8126 0.81264673 1005 P63173 RPL38 60S ribosomal protein L38 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.68 132.08 2 1.0821E-17 1 85655 20150910_Q1_SA_NiHu_Masterprac_group10_B 114.72 91.125 11462000 0 11462000 0 0 0 0 9073 1005 8955 40184 26545 26545 1 YMACCLLYRGDVVPK Oxidation (M) 1859.8732 0.87323163 518;44 G3V1U9;Q9BQE3;Q71U36;P68363;F5H5D3;F8VXZ4;E9PGK3;A6NHL2-2;A6NHL2;A8MUB1;P68366 TUBA1A;TUBA1C;TUBA1B;TUBAL3;TUBA4A Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha chain-like 3;Tubulin alpha-4A chain no no 0 1 1 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 131.79 131.79 3 1.6955E-14 2 84498 20150910_Q1_SA_NiHu_Masterprac_group10_B 96.059 73.739 11493000 0 0 0 11493000 0 0 9074 518;44 8956 40185;40186 26546;26547 26547 9 2 YMACCLLYRGDVVPK Unmodified 1843.8783 0.87831701 518;44 G3V1U9;Q9BQE3;Q71U36;P68363;F5H5D3;F8VXZ4;E9PGK3;A6NHL2-2;A6NHL2;A8MUB1;P68366 TUBA1A;TUBA1C;TUBA1B;TUBAL3;TUBA4A Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha chain-like 3;Tubulin alpha-4A chain no no 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 132.95 127.1 3 2.2999E-13 5 85702 20150910_Q1_SA_NiHu_Masterprac_group10_B 102.73 78.035 152360000 0 40394000 0 25967000 19850000 66153000 9075 518;44 8956 40187;40188;40189;40190 26548;26549;26550;26551;26552 26552 5 YMENGMQAVK Unmodified 1169.5209 0.52091494 687 O00257 CBX4 E3 SUMO-protein ligase CBX4 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 82.965 74.317 2 0.015941 1 51446 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.113 14.858 2154300 0 0 0 0 715100 1439200 9076 687 8957 40191;40192 26553 26553 1 YMLTHQELASDGEIETK Unmodified 1963.9197 0.91970735 660 Q02241-2;H7BYN4;Q02241;B4E1K0 KIF23 Kinesin-like protein KIF23 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 121.32 113.47 3 0.0013943 5 73846 20150910_Q1_SA_NiHu_Masterprac_group10_B 69.111 69.111 13050000 3724800 1733800 3792100 1006600 0 2792900 9077 660 8958 40193;40194;40195;40196;40197 26554;26555;26556;26557;26558 26557 5 YMPQNPCIIATK Unmodified 1434.6999 0.69994194 1051 Q09028-3;Q09028;Q09028-2;Q09028-4 RBBP4 Histone-binding protein RBBP4 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 130.4 112.41 2 0.0018056 1 81081 20150910_Q1_SA_NiHu_Masterprac_group13_C 80.17 57.619 7204600 0 0 7204600 0 0 0 9078 1051 8959 40198 26559 26559 1 YMPQNPHIIATK Unmodified 1411.7282 0.7282056 1153 Q16576;E9PC52;Q16576-2;Q5JP01 RBBP7 Histone-binding protein RBBP7 yes no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 101.86 92.21 3 0.0063536 3 62963 20150910_Q1_SA_NiHu_Masterprac_group15_B 61.48 36.785 21045000 0 2902700 5891000 0 791610 11459000 9079 1153 8960 40199;40200;40201;40202 26560;26561;26562 26561 3 YMVENHGEDYK Unmodified 1383.5765 0.57651556 1645 Q9Y3C1;D6RIC3;E7ERV7;E7ESQ0;D6RGD3 NOP16 Nucleolar protein 16 yes no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 64.41 57.975 2 0.0097609 2 41180 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.179 56.29 1750700 0 401490 0 0 691340 657890 9080 1645 8961 40203;40204;40205 26563;26564 26564 2 YNFRFEEPDSASVK Unmodified 1687.7842 0.78420015 1312 Q8N9T8;D3YTE0;Q8N9T8-2;F5H196 KRI1 Protein KRI1 homolog yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 129.93 129.33 3 1.544E-12 2 82818 20150910_Q1_SA_NiHu_Masterprac_group10_B 101.32 83.358 14274000 0 14274000 0 0 0 0 9081 1312 8962 40206 26565;26566 26566 2 YNGVFQECCQAEDK Unmodified 1746.6978 0.69776968 294 CON__P02769 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 96.359 91.132 2 0.0024521 1 62184 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.727 53.596 9062500 0 3061300 0 476100 1577000 3948000 + 9082 294 8963 40207;40208;40209;40210 26567 26567 1 YNGVFQECCQAEDKGACLLPK Unmodified 2486.1029 0.10285023 294 CON__P02769 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 132.24 131.64 3 0.023304 1 85086 20150910_Q1_SA_NiHu_Masterprac_group10_B 70.944 62.801 6632500 0 6632500 0 0 0 0 + 9083 294 8964 40211 26568 26568 0 YNKFPQSEREK Unmodified 1424.7048 0.70482762 917 P42695;E9PLE0 NCAPD3 Condensin-2 complex subunit D3 yes no 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 42.312 35.869 3 0.038408 1 29226 20150910_Q1_SA_NiHu_Masterprac_group13_C 62.166 45.694 756720 0 295040 461680 0 0 0 9084 917 8965 40212;40213 26569 26569 1 YNSGALHIK Unmodified 1001.5294 0.52942943 357 G3V2F4;E7EPD8;Q9NUW8;G3V2J6;G3V2U6;Q9BRS7;G3V4W8;G3V5H9 TDP1 Tyrosyl-DNA phosphodiesterase 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 70.29 63.688 2 0.032183 1 44580 20150910_Q1_SA_NiHu_Masterprac_group15_B 63.534 26.375 2483900 0 415810 0 0 733870 1334300 9085 357 8966 40214;40215;40216 26570 26570 1 YNVSTTPYLQSVKK Unmodified 1626.8617 0.86172219 421 E9PD90;Q8WWK9 CKAP2 Cytoskeleton-associated protein 2 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 120.8 110.78 3 0.0012763 1 73739 20150910_Q1_SA_NiHu_Masterprac_group10_C 63.662 50.076 1539100 1005600 0 0 0 0 533500 9086 421 8967 40217;40218 26571 26571 1 YQAECSQFK Unmodified 1159.4968 0.49680868 840 P15924;P15924-2;H7BYR0 DSP Desmoplakin yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 65.656 57.585 2 0.03981 1 40833 20150910_Q1_SA_NiHu_Masterprac_group15_B 60.102 60.102 1485300 0 0 201080 0 0 1284200 9087 840 8968 40219;40220 26572 26572 1 YQAECSQFKAK Unmodified 1358.6289 0.62888548 840 P15924;P15924-2;H7BYR0 DSP Desmoplakin yes no 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 55.971 50.988 3 0.0044407 2 36384 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.288 48.927 14226000 918090 2409300 5046100 1970700 0 3882200 9088 840 8969 40221;40222;40223;40224;40225 26573;26574 26574 2 YQAEIPDRLVEGESDNRNQQK Unmodified 2488.1942 0.19424273 754 O94776 MTA2 Metastasis-associated protein MTA2 yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 116.81 106.61 3;4 2.7763E-05 5 75463 20150910_Q1_SA_NiHu_Masterprac_group15_C 68.243 56.698 154780000 0 37842000 27173000 0 15679000 74084000 9089 754 8970 40226;40227;40228;40229;40230;40231 26575;26576;26577;26578;26579 26578 5 YQEQLVQEQELAK Unmodified 1604.8046 0.80460124 917 P42695;E9PQA3 NCAPD3 Condensin-2 complex subunit D3 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 117.93 107.8 2 0.010633 1 70961 20150910_Q1_SA_NiHu_Masterprac_group10_B 54.898 38.658 3847900 0 798230 984890 0 277660 1787200 9090 917 8971 40232;40233;40234;40235 26580 26580 1 YQESQEPLNEVNSFPQK Unmodified 2035.9487 0.9486993 1271 Q86Y07-4;Q86Y07-3;Q86Y07 VRK2 Serine/threonine-protein kinase VRK2 yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 131.67 117.57 2 3.0482E-32 3 77869 20150910_Q1_SA_NiHu_Masterprac_group10_C 111.58 76.272 26847000 7291600 0 8481700 0 1240500 9833000 9091 1271 8972 40236;40237;40238;40239 26581;26582;26583 26583 3 YQGDGIVEDEEETMENNEEK Unmodified 2356.9489 0.94889481 1563;452 Q9NYF8-2;Q9NYF8;Q9NYF8-4;H0YF14;Q9NYF8-3;E9PK91;H0YF63 BCLAF1 Bcl-2-associated transcription factor 1 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 131.53 121.12 2 6.3294E-67 5 78067 20150910_Q1_SA_NiHu_Masterprac_group10_C 124.76 111.46 29310000 8793900 8412900 5759100 5715400 628980 0 9092 1563;452 8973 40240;40241;40242;40243;40244;40245 26584;26585;26586;26587;26588 26588 5 YQGLEIK Unmodified 849.45962 0.45961853 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 94.61 86.747 2 0.0060524 2 59241 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.352 23.638 114020000 6785800 18799000 15056000 7231700 25397000 40753000 9093 1611 8974 40246;40247;40248;40249;40250;40251 26589;26590 26590 2 YQGLEIKSSDQPLTVPVSPK Unmodified 2185.163 0.16304917 1611 Q9ULW0;Q96RR5 TPX2;HCA90 Targeting protein for Xklp2 yes no 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 133.3 117.61 3 0.00010711 1 79099 20150910_Q1_SA_NiHu_Masterprac_group10_C 71.853 54.612 70250000 70250000 0 0 0 0 0 9094 1611 8975 40252 26591 26591 1 YQPGKYPMPNQSVPIT Oxidation (M) 1834.8924 0.89237039 226 C9J3P9 PLSCR4 yes yes 0 1 1 By MS/MS By matching By matching By matching By matching By matching 1 132.25 116.56 2 0.030091 1 77904 20150910_Q1_SA_NiHu_Masterprac_group10_C 47.774 16.685 0 0 0 0 0 0 0 9095 226 8976 40253 26592 26592 19 1 YQPQQDMSQEGYGTR Unmodified 1786.7581 0.75806175 1326 Q8NFD5;Q8NFD5-2;Q8NFD5-3;G3XAA0;H0Y7H8;C9JZD6;H0Y2R3 ARID1B AT-rich interactive domain-containing protein 1B yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 81.164 79.709 2 0.009062 1 54879 20150910_Q1_SA_NiHu_Masterprac_group15_B 66.246 55.385 0 0 0 0 0 0 0 9096 1326 8977 40254 26593 26593 1 YQTDLYER Unmodified 1086.4982 0.49818889 1339 Q8WUA2 PPIL4 Peptidyl-prolyl cis-trans isomerase-like 4 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 84.139 76.56 2 0.0061273 2 52842 20150910_Q1_SA_NiHu_Masterprac_group15_B 95.358 72.004 12708000 1115200 1542900 1605800 1378200 3434000 3631800 9097 1339 8978 40255;40256;40257;40258;40259;40260 26594;26595 26594 2 YRHSDGNLCVK Unmodified 1347.6354 0.63536784 937 P49458;E9PE20;P49458-2 SRP9 Signal recognition particle 9 kDa protein yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 39.738 35.325 3 0.0034215 2 28529 20150910_Q1_SA_NiHu_Masterprac_group13_C 83.045 49.957 2627500 0 1686200 748210 0 0 193030 9098 937 8979 40261;40262;40263 26596;26597 26596 2 YRPDSLDGPMEGDSCPTGNSMK Unmodified 2412.9984 0.99844473 965 P54132;F5H7R6;H0YNU5 BLM Bloom syndrome protein yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 116.62 106.21 3 0.024554 1 72760 20150910_Q1_SA_NiHu_Masterprac_group15_B 34.265 30.27 2895400 0 0 0 0 1062100 1833300 9099 965 8980 40264;40265 26598 26598 1 YRTTSSANNPNLMYQDECDRR Unmodified 2590.1289 0.12888206 1361;629 Q92841-1;Q92841;Q92841-2;C9JMU5;G5E9L5;Q9UQL5;Q92841-3;H3BLZ8;Q59F66 DDX17 Probable ATP-dependent RNA helicase DDX17 no no 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 90.213 81.491 4 3.2732E-06 2 60914 20150910_Q1_SA_NiHu_Masterprac_group15_C 66.152 58.4 8271000 0 0 1242400 1437100 2405000 3186500 9100 1361;629 8981 40266;40267;40268;40269 26599;26600 26600 2 YSAQIEDLQVK Unmodified 1292.6612 0.66123147 828 P12755 SKI Ski oncogene yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 122.91 118.15 2 0.0020299 1 80404 20150910_Q1_SA_NiHu_Masterprac_group15_B 89.356 58.532 1670900 0 0 0 0 0 1670900 9101 828 8982 40270 26601 26601 1 YSCLVAGPHQR Unmodified 1286.619 0.6189895 1164 Q3B726 TWISTNB DNA-directed RNA polymerase I subunit RPA43 yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 69.307 63.712 2 0.0030558 3 44697 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.507 38.155 6625800 729590 1675100 0 558130 1321600 2341400 9102 1164 8983 40271;40272;40273;40274;40275 26602;26603;26604 26602 3 YSCVILDEAHER Unmodified 1490.6824 0.68237762 1496 Q9H6R0;Q9H6R0-2;I3L1L6 DHX33 Putative ATP-dependent RNA helicase DHX33 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 111.92 102.86 3 0.0031377 1 70104 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.952 46.009 7842800 547050 2016600 1188100 0 0 4091100 9103 1496 8984 40276;40277;40278;40279 26605 26605 1 YSDDTPLPTPSYK Unmodified 1482.6878 0.68784015 1356 Q92620 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 120.04 115.38 2 0.02658 1 78776 20150910_Q1_SA_NiHu_Masterprac_group15_B 45.825 37.574 943370 0 0 0 0 0 943370 9104 1356 8985 40280 26606 26606 1 YSDYIKGSNLDAPEPYRIGR Unmodified 2313.139 0.13895968 487 F5GX68 DNMT1 Cytosine-specific methyltransferase no no 0 0 2 By matching By MS/MS By matching By MS/MS By matching By matching 2 1 130.82 130.42 3;4 0.0050187 3 83850 20150910_Q1_SA_NiHu_Masterprac_group13_B 44.998 23.827 38117000 0 30971000 0 7146100 0 0 9105 487 8986 40281;40282;40283 26607;26608;26609 26607 3 YSGSYNDYLR Unmodified 1236.5411 0.54111633 1410 Q96PK6 RBM14 RNA-binding protein 14 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 112.3 102 2 0.033976 1 69687 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.721 30.483 2386700 0 0 0 0 552060 1834600 9106 1410 8987 40284;40285 26610 26610 1 YSLIPDEEEEK Unmodified 1350.6191 0.61909188 141 Q9NP64-2;B4DY38;Q9NP64;E7EPF0 ZCCHC17 Nucleolar protein of 40 kDa yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 2 1 121.44 119.45 2 0.0093835 2 77014 20150910_Q1_SA_NiHu_Masterprac_group10_B 65.695 58.353 4166100 0 1659100 0 0 0 2507000 9107 141 8988 40286;40287;40288 26611;26612 26612 2 YSLIPDEEEEKEEAK Unmodified 1807.8364 0.83635488 141 Q9NP64-2;B4DY38;Q9NP64;E7EPF0 ZCCHC17 Nucleolar protein of 40 kDa yes no 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 1 2 2 120.76 107.92 3 2.2672E-42 3 72244 20150910_Q1_SA_NiHu_Masterprac_group10_C 119.96 108 7105200 2405600 0 749400 0 1411200 2539000 9108 141 8989 40289;40290;40291;40292;40293;40294;40295 26613;26614;26615 26615 3 YSLNSGAVKNPK Unmodified 1276.6776 0.67755023 835 P13682;B4DUB8 ZNF35 Zinc finger protein 35 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 4 2 2 2 2 2 71.744 64.282 2;3 1.0703E-49 8 46605 20150910_Q1_SA_NiHu_Masterprac_group10_C 131.12 72.486 38283000 8088400 3707800 5299000 3371900 9967700 7848700 9109 835 8990 40296;40297;40298;40299;40300;40301;40302;40303;40304;40305;40306;40307;40308;40309 26616;26617;26618;26619;26620;26621;26622;26623 26623 8 YSLVEAK Unmodified 808.43307 0.43306943 840 P15924;P15924-2 DSP Desmoplakin yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 71.931 71.304 2 0.027408 1 49371 20150910_Q1_SA_NiHu_Masterprac_group15_B 86.472 17.297 2207700 0 0 0 832460 0 1375300 9110 840 8991 40310;40311 26624 26624 1 YSMDNTPHTPTPFK Unmodified 1634.7399 0.73989249 554 F8W6N6;P10244 MYBL2 Myb-related protein B yes no 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 2 1 120.34 108.38 2;3 0.001439 2 76541 20150910_Q1_SA_NiHu_Masterprac_group15_C 81.904 69.411 8059200 762250 0 1396900 2176300 1225600 2498100 9111 554 8992 40312;40313;40314;40315;40316;40317 26625;26626 26625 2 YSMYNSVSQK Unmodified 1205.5387 0.53867349 1294 Q8N1G2;Q5T7F5 FTSJD2 Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 80.547 73.811 2 0.015827 1 51153 20150910_Q1_SA_NiHu_Masterprac_group15_B 67.214 49.493 2429900 0 445290 0 0 619700 1364900 9112 1294 8993 40318;40319;40320 26627 26627 1 YSNSEVVTGSGRQEAQK Unmodified 1838.8759 0.8758687 359 Q7L576;E7EQ04 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 54.753 49.054 3 0.0020289 2 34860 20150910_Q1_SA_NiHu_Masterprac_group15_B 55.975 45.835 4188200 0 849160 0 0 998850 2340200 9113 359 8994 40321;40322;40323 26628;26629 26628 2 YSPKTPPRWAEDQNSLLK Unmodified 2129.0906 0.090552927 945;1251 P49792;E9PGT0;Q7Z3J3;B4DZH4 RANBP2;RGPD4 E3 SUMO-protein ligase RanBP2;Putative peptidyl-prolyl cis-trans isomerase;RanBP2-like and GRIP domain-containing protein 4 no no 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 126.35 116.87 3;4 0.004149 6 77121 20150910_Q1_SA_NiHu_Masterprac_group13_B 47.217 34.328 40977000 14313000 1809400 13668000 2240900 6191800 2754100 9114 945;1251 8995 40324;40325;40326;40327;40328;40329 26630;26631;26632;26633;26634;26635 26631 6 YSPTSPTYSPTSPK Unmodified 1511.7144 0.71438925 872 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 90.92 83.55 2 0.0016287 1 61992 20150910_Q1_SA_NiHu_Masterprac_group15_C 68.171 29.591 2266400 234910 588310 0 0 921710 521500 9115 872 8996 40330;40331;40332;40333 26636 26636 1 YSQLVVETIRR Unmodified 1362.7619 0.76194857 1350 Q92522 H1FX Histone H1x yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 119.5 107.64 3 0.0020012 3 71572 20150910_Q1_SA_NiHu_Masterprac_group10_C 80.102 63.328 6173400 1023900 0 0 0 3189000 1960500 9116 1350 8997 40334;40335;40336 26637;26638;26639 26639 3 YSQSDLEQTKTR Unmodified 1454.7001 0.70013617 1110 Q14683;G8JLG1 SMC1A Structural maintenance of chromosomes protein 1A yes no 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 57.084 54.274 3 0.011541 1 38861 20150910_Q1_SA_NiHu_Masterprac_group10_B 57.885 41.965 747570 0 747570 0 0 0 0 9117 1110 8998 40337 26640 26640 1 YSRGAGLGFSTAPNK Unmodified 1524.7685 0.76849051 1157 Q1ED39;H3BNU8 KNOP1 Lysine-rich nucleolar protein 1 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1 94.374 85.3 3 1.0715E-08 5 63324 20150910_Q1_SA_NiHu_Masterprac_group15_C 99.069 71.515 37355000 4616000 4536600 4924000 3714800 9469000 10095000 9118 1157 8999 40338;40339;40340;40341;40342;40343;40344 26641;26642;26643;26644;26645 26644 5 YSSICSEHFTPDCFK Unmodified 1876.776 0.77602 1552 Q9NVV9;E9PIS9 THAP1 THAP domain-containing protein 1 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 130.44 130.14 3 0.0020693 1 83296 20150910_Q1_SA_NiHu_Masterprac_group10_B 60.657 46.911 3717600 0 1463600 0 2254000 0 0 9119 1552 9000 40345;40346 26646 26646 1 YSTPTYTGGQSESHVQSASEDTVTER Unmodified 2816.2373 0.23728934 1248 Q7Z2T5 TRMT1L TRMT1-like protein yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 108.66 96.095 3 0.0015867 4 69405 20150910_Q1_SA_NiHu_Masterprac_group15_C 44.254 41.125 33536000 10188000 0 4592600 0 4893400 13862000 9120 1248 9001 40347;40348;40349;40350 26647;26648;26649;26650 26649 4 YSTPTYTGGQSESHVQSASEDTVTERVEMSVNDK Unmodified 3718.6541 0.65405678 1248 Q7Z2T5 TRMT1L TRMT1-like protein yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 131.31 126.34 4 0.0002627 1 86169 20150910_Q1_SA_NiHu_Masterprac_group15_B 30.471 24.5 16096000 0 0 0 0 0 16096000 9121 1248 9002 40351 26651 26651 1 YSWNVKPNASR Unmodified 1320.6575 0.65748349 739 O75319 DUSP11 RNA/RNP complex-1-interacting phosphatase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 93.585 84.21 3 0.0060645 1 57727 20150910_Q1_SA_NiHu_Masterprac_group15_B 70.808 41.85 12514000 391000 2253100 1508500 0 2267800 6094100 9122 739 9003 40352;40353;40354;40355;40356 26652 26652 1 YTCSFCGK Unmodified 1021.3997 0.39973717 229 C9J4Z3;P61513;G5E9R3;E9PEL3;A6NKH3 RPL37A;RPL37L 60S ribosomal protein L37a;Putative 60S ribosomal protein L37a-like yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 59.084 57.93 2 0.022624 1 40934 20150910_Q1_SA_NiHu_Masterprac_group15_B 77.732 70.512 534800 0 0 0 0 0 534800 9123 229 9004 40357 26653 26653 1 YTIDAMQK Unmodified 968.46372 0.46371763 1576 Q9P275;Q9P275-2;F5H3B9 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 86.097 80.995 2 0.0079237 1 55610 20150910_Q1_SA_NiHu_Masterprac_group15_B 98.458 35.994 5250200 0 285920 0 307050 1885900 2771300 9124 1576 9005 40358;40359;40360;40361 26654 26654 1 YTMALQQK Unmodified 981.49535 0.49535211 1599 Q9UJX3-2;Q9UJX3 ANAPC7 Anaphase-promoting complex subunit 7 yes no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 81 75.134 2 0.015457 2 51921 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.916 35.474 9873900 1159600 1355100 1953000 1075000 0 4331100 9125 1599 9006 40362;40363;40364;40365;40366 26655;26656 26656 2 YTPSQQGVAFNSGAKQR Unmodified 1837.9071 0.90710925 583 Q13573;G3V3A4;G3V4X8;E9PGQ7 SNW1 SNW domain-containing protein 1 yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 83.971 74.747 3 0.0092594 2 51811 20150910_Q1_SA_NiHu_Masterprac_group10_B 44.045 31.33 2929400 0 932350 686300 0 427260 883490 9126 583 9007 40367;40368;40369;40370 26657;26658 26658 2 YTRKVPQVSTPTLVEVSR Unmodified 2059.1426 0.1425885 294 CON__P02769 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 4 2 2 125.71 117.58 3;4 1.3256E-45 10 76312 20150910_Q1_SA_NiHu_Masterprac_group10_C 118.66 107.01 218400000 83515000 20691000 43444000 26076000 8915900 35763000 + 9127 294 9008 40371;40372;40373;40374;40375;40376;40377;40378;40379;40380;40381;40382;40383;40384 26659;26660;26661;26662;26663;26664;26665;26666;26667;26668 26668 10 YTSIPTSVEESGK Unmodified 1396.6722 0.67219008 635 H3BP78;Q9NVI1-2;Q9NVI1-1;Q9NVI1;F8W7R3 FANCI Fanconi anemia group I protein yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 95.542 93.185 2 0.011377 1 63682 20150910_Q1_SA_NiHu_Masterprac_group15_B 73.877 60.551 0 0 0 0 0 0 0 9128 635 9009 40385 26669 26669 1 YTVQFSK Unmodified 871.44397 0.44396847 1285 Q8IX12-2;Q8IX12;F5H1H2;F5H3E1;F5H2E6 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 89.586 82.146 2 0.025922 1 61116 20150910_Q1_SA_NiHu_Masterprac_group15_C 86.833 42.141 6097400 0 463580 728660 424180 1203800 3277200 9129 1285 9010 40386;40387;40388;40389;40390 26670 26670 1 YVCLANKNCPVDK Unmodified 1579.7487 0.74868304 1352 Q92570;Q92570-3;E9PBS2;Q92570-2;E9PBQ4;C9J8W4;Q6NXU0;F8W6I3;P43354;F5H4G9;H7BZ00 NR4A3;NR4A2 Nuclear receptor subfamily 4 group A member 3;Nuclear receptor subfamily 4 group A member 2 yes no 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 78.409 70.021 3 1.1936E-16 7 49996 20150910_Q1_SA_NiHu_Masterprac_group10_C 112.84 92.566 22933000 8858400 0 4032900 4585900 3007200 2448800 9130 1352 9011 40391;40392;40393;40394;40395;40396 26671;26672;26673;26674;26675;26676;26677 26677 7 YVCSICDQGNFRK Unmodified 1645.7341 0.73409561 1633 Q9Y2K1 ZBTB1 Zinc finger and BTB domain-containing protein 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 2 1 93.644 84.585 3 0.0009348 5 62820 20150910_Q1_SA_NiHu_Masterprac_group15_C 81.709 66.322 8730600 803850 897550 947890 728650 2374500 2978100 9131 1633 9012 40397;40398;40399;40400;40401;40402;40403;40404 26678;26679;26680;26681;26682 26680 5 YVEVVPCSTEEMSR Unmodified 1684.7437 0.74365724 1498 Q9H6T0-2;Q9H6T0 ESRP2 Epithelial splicing regulatory protein 2 yes no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 124.56 115.08 2 0.001107 5 79399 20150910_Q1_SA_NiHu_Masterprac_group15_C 72.815 59.715 13995000 3846800 1557400 2706700 744840 3369300 1769700 9132 1498 9013 40405;40406;40407;40408;40409;40410 26683;26684;26685;26686;26687 26684 5 YVIESSSHTPELAR Unmodified 1587.7893 0.78928553 1297 Q8N3V7-2;Q8N3V7-3;Q8N3V7 SYNPO Synaptopodin yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 97.543 95.735 3 0.0063548 1 64081 20150910_Q1_SA_NiHu_Masterprac_group10_B 52.891 29.713 2311600 0 2311600 0 0 0 0 9133 1297 9014 40411 26688 26688 1 YVLCTAPR Unmodified 978.49569 0.49568646 873 P25205 MCM3 DNA replication licensing factor MCM3 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 88.566 81.106 2 0.0079237 3 62310 20150910_Q1_SA_NiHu_Masterprac_group13_C 98.458 50.61 38290000 0 5144200 3507400 1541400 7981000 20116000 9134 873 9015 40412;40413;40414;40415;40416 26689;26690;26691 26690 3 YVLGYKQTLK Unmodified 1211.6914 0.69140938 342 E5RI99;P62888;E5RJH3 RPL30 60S ribosomal protein L30 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 2 3 7 2 104.18 94.531 2;3 3.3955E-221 19 63330 20150910_Q1_SA_NiHu_Masterprac_group10_C 184.71 129.62 4702700000 1540800000 120200000 104640000 965360000 1710600000 261020000 9135 342 9016 40417;40418;40419;40420;40421;40422;40423;40424;40425;40426;40427;40428;40429;40430;40431;40432;40433;40434;40435;40436;40437;40438;40439 26692;26693;26694;26695;26696;26697;26698;26699;26700;26701;26702;26703;26704;26705;26706;26707;26708;26709;26710 26708 19 YVLGYKQTLKMIR Unmodified 1611.9171 0.917069 342 E5RI99;P62888;E5RJH3 RPL30 60S ribosomal protein L30 yes no 0 0 2 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 131.56 123.72 3;4 0.0019992 2 84078 20150910_Q1_SA_NiHu_Masterprac_group13_B 66.326 60.656 29169000 21810000 0 0 7359400 0 0 9136 342 9017 40440;40441 26711;26712 26711 2 YVLLNPK Unmodified 845.50109 0.50108942 1576 Q9P275;Q9P275-2;F5H3B9 USP36 Ubiquitin carboxyl-terminal hydrolase 36 yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 106.59 98.072 2 0.040642 1 66475 20150910_Q1_SA_NiHu_Masterprac_group15_B 79.454 45.715 22009000 1928800 2411800 1934200 2304500 4989000 8441100 9137 1576 9018 40442;40443;40444;40445;40446;40447 26713 26713 1 YVPKYVPLADVK Unmodified 1390.786 0.78603805 914 P42167;P42167-2;G5E972;H0YJH7 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 131.24 126.28 3 0.0023644 1 86086 20150910_Q1_SA_NiHu_Masterprac_group15_B 75.088 59.167 1255400 0 0 0 0 0 1255400 9138 914 9019 40448 26714 26714 1 YVQELAAVRADAETR Unmodified 1690.8638 0.86384745 1121 Q14980-2;Q14980;F5H2L0;H0YFY6;H0YH75 NUMA1 Nuclear mitotic apparatus protein 1 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 122.75 109.62 3 0.0055448 1 77304 20150910_Q1_SA_NiHu_Masterprac_group15_C 52.5 29.473 9960400 0 0 879020 0 2150300 6931100 9139 1121 9020 40449;40450;40451 26715 26715 1 YWTESNGVESK Unmodified 1298.5779 0.57789577 507 F5H2R4;F5H0Y0;F5H689;Q14680;B7Z6Y0;B7Z7Q1;A6P3A8;A6P3A7 MELK Maternal embryonic leucine zipper kinase yes no 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 81.629 73.177 2 0.019704 1 50778 20150910_Q1_SA_NiHu_Masterprac_group15_B 43.502 20.034 11539000 1106700 0 3084300 1628300 1664600 4055400 9140 507 9021 40452;40453;40454;40455;40456 26716 26716 1 YYADGEDAYAMK Unmodified 1395.5653 0.56528217 29 A6NM98;P41227;F8W808;A8MWP7;H0Y8T0;C9JN83;C9JW55;Q9BSU3 NAA10;NAA11 N-alpha-acetyltransferase 10;N-alpha-acetyltransferase 11 yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 102.24 92.636 2 0.00025969 2 63270 20150910_Q1_SA_NiHu_Masterprac_group15_B 84.169 66.43 1496000 0 866420 629620 0 0 0 9141 29 9022 40457;40458;40459 26717;26718 26717 2 YYCQNFAPNFK Unmodified 1450.634 0.63397086 1417 Q96RE7 NACC1 Nucleus accumbens-associated protein 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 130.95 130.35 2 0.0025566 1 83784 20150910_Q1_SA_NiHu_Masterprac_group10_B 86.882 74.119 6338900 0 6338900 0 0 0 0 9142 1417 9023 40460 26719 26719 1 YYELHETIGTGGFAK Unmodified 1684.8097 0.80968662 507 F5H2R4;F5H0Y0;F5H689;Q14680 MELK Maternal embryonic leucine zipper kinase yes no 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 130.54 129.94 2 0.0086647 1 83414 20150910_Q1_SA_NiHu_Masterprac_group10_B 48.131 30.058 906370 0 906370 0 0 0 0 9143 507 9024 40461 26720 26720 1 YYETGSIRPR Unmodified 1240.62 0.62003536 877;878 P26367;G3V3Q9;P26367-2 PAX6 Paired box protein Pax-6 no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 71.601 64.421 3 0.0086362 1 44941 20150910_Q1_SA_NiHu_Masterprac_group15_B 82.645 67.055 13943000 0 1085000 925510 550830 2108200 9273300 9144 877;878 9025 40462;40463;40464;40465;40466 26721 26721 1 YYGGGSEGGRAPK Unmodified 1297.6051 0.60511357 838 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 39.628 34.723 2;3 6.9664E-05 7 25269 20150910_Q1_SA_NiHu_Masterprac_group10_C 96.866 66.939 42610000 4987500 7295300 11950000 4171800 4043400 10161000 9145 838 9026 40467;40468;40469;40470;40471;40472;40473;40474;40475;40476;40477;40478 26722;26723;26724;26725;26726;26727;26728 26728 7 YYKGLGTSTSK Unmodified 1203.6136 0.61355299 655 P11388;H7BXX8;P11388-2;P11388-3;P11388-4;C9J5P2;H7BXH5 TOP2A DNA topoisomerase 2-alpha yes no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 54.92 47.408 2;3 0.013852 3 38779 20150910_Q1_SA_NiHu_Masterprac_group13_C 60.641 37.269 5920900 0 1936200 2884800 0 539060 560790 9146 655 9027 40479;40480;40481;40482;40483;40484 26729;26730;26731 26730 3 YYKGLGTSTSKEAK Unmodified 1531.7882 0.7882229 655 P11388;H7BXX8;P11388-2;P11388-3;P11388-4;C9J5P2;H7BXH5 TOP2A DNA topoisomerase 2-alpha yes no 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 48.626 43.07 3 0.0040062 4 35190 20150910_Q1_SA_NiHu_Masterprac_group13_C 79.744 79.744 3815600 0 913060 1281300 407780 467550 745910 9147 655 9028 40485;40486;40487;40488;40489 26732;26733;26734;26735 26733 4 YYPTEDVPRK Unmodified 1266.6245 0.62445203 551 F8W181;Q02878;F8VZ45;F8VR69 RPL6 60S ribosomal protein L6 yes no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 76.459 69.39 3 0.015 3 53612 20150910_Q1_SA_NiHu_Masterprac_group15_C 57.785 43.487 5606700 683160 1183600 0 0 1910600 1829300 9148 551 9029 40490;40491;40492;40493 26736;26737;26738 26738 3 YYTGNYDQYVK Unmodified 1412.6248 0.62484596 1589 Q9UG63 ABCF2 ATP-binding cassette sub-family F member 2 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 116.53 108.45 2 0.00033846 1 76560 20150910_Q1_SA_NiHu_Masterprac_group15_C 97.734 80.522 9264000 0 1082400 1263300 1667200 2564400 2686800 9149 1589 9030 40494;40495;40496;40497;40498 26739 26739 1 YYTPYQEHVALHAPIK Unmodified 1928.9785 0.97848328 1195 Q5T7W0-2 ZNF618 Zinc finger protein 618 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 129.23 120.38 3;4 0.00045636 7 84708 20150910_Q1_SA_NiHu_Masterprac_group15_B 72.523 43.8 45248000 10985000 1474600 7271500 1282300 2299000 21935000 9150 1195 9031 40499;40500;40501;40502;40503;40504;40505 26740;26741;26742;26743;26744;26745;26746 26743 7 YYVTIIDAPGHR Unmodified 1403.7197 0.7197494 1006 Q5VTE0;P68104;Q6IQ15;F8W6I0;A6PW80;Q5JR01 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 2 131.02 121.79 2;3 0.0021052 3 85514 20150910_Q1_SA_NiHu_Masterprac_group15_B 74.237 48.345 35706000 0 0 0 0 3537900 32168000 9151 1006 9032 40506;40507;40508 26747;26748;26749 26747 2 YYVTIIDAPGHRDFIK Unmodified 1906.9941 0.99413335 1006 Q5VTE0;P68104;Q6IQ15;F8W6I0;A6PW80;Q5JR01 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 5 1 133.22 121.91 2;3;4 6.3096E-140 10 85708 20150910_Q1_SA_NiHu_Masterprac_group13_B 148.85 131.97 4278300000 36217000 66034000 291510000 207090000 3403500000 273970000 9152 1006 9033 40509;40510;40511;40512;40513;40514;40515;40516;40517;40518;40519;40520;40521 26750;26751;26752;26753;26754;26755;26756;26757;26758;26759 26750 8 YYYAVVDCDSPETASK Unmodified 1866.7982 0.79819523 1490 Q9H501 ESF1 ESF1 homolog yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 118.33 116.51 2 0.030639 1 79374 20150910_Q1_SA_NiHu_Masterprac_group15_B 38.661 28.415 2202100 0 563230 0 511060 0 1127800 9153 1490 9034 40522;40523;40524 26760 26760 1 YYYQLNSK Unmodified 1077.5131 0.51311067 687 O00257 CBX4 E3 SUMO-protein ligase CBX4 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 93.315 85.47 2 0.011726 2 63325 20150910_Q1_SA_NiHu_Masterprac_group15_C 91.069 91.069 30934000 3105900 2511300 4072300 5963300 7601500 7679500 9154 687 9035 40525;40526;40527;40528;40529;40530 26761;26762 26762 2