Raw file	Experiment	Enzyme	Enzyme mode	Enzyme first search	Enzyme mode first search	Use enzyme first search	Variable modifications	Variable modifications first search	Use variable modifications first search	Multiplicity	Max. missed cleavages	Labels0	LC-MS run type	Time-dependent recalibration	MS	MS/MS	MS/MS Submitted	MS/MS Submitted (SIL)	MS/MS Submitted (ISO)	MS/MS Submitted (PEAK)	MS/MS Identified	MS/MS Identified (SIL)	MS/MS Identified (ISO)	MS/MS Identified (PEAK)	MS/MS Identified [%]	MS/MS Identified (SIL) [%]	MS/MS Identified (ISO) [%]	MS/MS Identified (PEAK) [%]	Peptide Sequences Identified	Peaks	Peaks Sequenced	Peaks Sequenced [%]	Peaks Repeatedly Sequenced	Peaks Repeatedly Sequenced [%]	Isotope Patterns	Isotope Patterns Sequenced	Isotope Patterns Sequenced (z>1)	Isotope Patterns Sequenced [%]	Isotope Patterns Sequenced (z>1) [%]	Isotope Patterns Repeatedly Sequenced	Isotope Patterns Repeatedly Sequenced [%]	Recalibrated	Av. Absolute Mass Deviation [ppm]	Mass Standard Deviation [ppm]	Av. Absolute Mass Deviation [mDa]	Mass Standard Deviation [mDa]	Label free norm param
20171018_Fusion1_SA_PJ_studentcourse_AM_13_GFP	GFP1	Trypsin/P	Specific			False	Acetyl (Protein N-term);Oxidation (M)		False	1	2		Standard		14096	51416	79903	22929	0	56974	2231	2196	0	35	2.79	9.58	NaN	0.06	1711	1393187	38883	2.79	980	2.52	78200	19003	16518	24.3	38.08	3459	18.2	+	0.25996	0.34612	0.18675	0.26598	
20171018_Fusion1_SA_PJ_studentcourse_AM_13_WT	WT1	Trypsin/P	Specific			False	Acetyl (Protein N-term);Oxidation (M)		False	1	2		Standard		13540	71037	106409	35665	0	70744	4197	4101	0	96	3.94	11.5	NaN	0.14	3288	1328369	54727	4.12	1447	2.64	98927	30048	26856	30.37	39.81	5005	16.66	+	0.24681	0.35798	0.17607	0.27194	
20171018_Fusion1_SA_PJ_studentcourse_BW_8_GFP	GFP2	Trypsin/P	Specific			False	Acetyl (Protein N-term);Oxidation (M)		False	1	2		Standard		14241	52808	82387	23229	0	59158	2004	1970	0	34	2.43	8.48	NaN	0.06	1517	1403627	39210	2.79	947	2.42	81435	19152	16603	23.52	37.45	3605	18.82	+	0.26967	0.36591	0.19386	0.28347	
20171018_Fusion1_SA_PJ_studentcourse_BW_8_WT	WT2	Trypsin/P	Specific			False	Acetyl (Protein N-term);Oxidation (M)		False	1	2		Standard		14252	51148	80898	21398	0	59500	1283	1248	0	35	1.59	5.83	NaN	0.06	952	1371409	37336	2.72	998	2.67	79860	18041	15634	22.59	32.26	2947	16.34	+	0.26667	0.36032	0.18955	0.27631	
20171018_Fusion1_SA_PJ_studentcourse_HNIP_1_GFP	GFP3	Trypsin/P	Specific			False	Acetyl (Protein N-term);Oxidation (M)		False	1	2		Standard		13475	47411	77275	17547	0	59728	1053	1042	0	11	1.36	5.94	NaN	0.02	820	1628669	35938	2.21	853	2.37	69985	14568	11767	20.82	33.01	2591	17.79	+	0.22152	0.28837	0.15621	0.2154	
20171018_Fusion1_SA_PJ_studentcourse_HNIP_1_WT	WT3	Trypsin/P	Specific			False	Acetyl (Protein N-term);Oxidation (M)		False	1	2		Standard		13926	34792	53361	16223	0	37138	776	761	0	15	1.45	4.69	NaN	0.04	643	1379745	27232	1.97	558	2.05	71361	14037	11730	19.67	33.89	2001	14.26	+	0.28894	0.37346	0.20864	0.2854	
20171018_Fusion1_SA_PJ_studentcourse_PR_11_GFP	GFP4	Trypsin/P	Specific			False	Acetyl (Protein N-term);Oxidation (M)		False	1	2		Standard		12767	84981	125311	44651	0	80660	7325	7129	0	196	5.85	15.97	NaN	0.24	5416	1346229	67290	5	1996	2.97	112112	37202	33835	33.18	41.67	6615	17.78	+	0.26548	0.37081	0.1896	0.27596	
20171018_Fusion1_SA_PJ_studentcourse_PR_11_WT	WT4	Trypsin/P	Specific			False	Acetyl (Protein N-term);Oxidation (M)		False	1	2		Standard		13443	73941	110734	37148	0	73586	4615	4508	0	107	4.17	12.14	NaN	0.15	3698	1355619	56780	4.19	1582	2.79	103283	31284	27938	30.29	39.67	5249	16.78	+	0.26429	0.37154	0.18781	0.27793	
20171018_Fusion1_SA_PJ_studentcourse_RW_3_GFP	GFP5	Trypsin/P	Specific			False	Acetyl (Protein N-term);Oxidation (M)		False	1	2		Standard		13746	61202	91717	30687	0	61030	2797	2757	0	40	3.05	8.98	NaN	0.07	2180	1382836	48232	3.49	1299	2.69	92436	25563	22523	27.65	38.44	4531	17.72	+	0.27748	0.39361	0.19786	0.29743	
20171018_Fusion1_SA_PJ_studentcourse_RW_3_WT	WT5	Trypsin/P	Specific			False	Acetyl (Protein N-term);Oxidation (M)		False	1	2		Standard		12846	80519	114422	46616	0	67806	9096	8865	0	231	7.95	19.02	NaN	0.34	7446	1426547	66440	4.66	1737	2.61	123262	39491	35978	32.04	39.69	6411	16.23	+	0.25908	0.37088	0.18402	0.27825	
20171018_Fusion1_SA_PJ_studentcourse_VVV_5_GFP	GFP6	Trypsin/P	Specific			False	Acetyl (Protein N-term);Oxidation (M)		False	1	2		Standard		13695	70675	104387	36963	0	67424	3918	3811	0	107	3.75	10.31	NaN	0.16	3135	1369842	56759	4.14	1409	2.48	107030	31254	27810	29.2	37.05	5128	16.41	+	0.26033	0.35129	0.18414	0.261	
20171018_Fusion1_SA_PJ_studentcourse_VVV_5_WT	WT6	Trypsin/P	Specific			False	Acetyl (Protein N-term);Oxidation (M)		False	1	2		Standard		13659	67879	101065	34693	0	66372	3415	3342	0	73	3.38	9.63	NaN	0.11	2845	1353020	53316	3.94	1391	2.61	101996	29370	26139	28.8	37.47	4811	16.38	+	0.28051	0.37337	0.20051	0.28612	
GFP1																													1711																		
GFP2																													1517																		
GFP3																													820																		
GFP4																													5416																		
GFP5																													2180																		
GFP6																													3135																		
WT1																													3288																		
WT2																													952																		
WT3																													643																		
WT4																													3698																		
WT5																													7446																		
WT6																													2845																		
Total															163686	747809	1127869	367749	0	760120	42710	41730	0	980	3.79	11.35	NaN	0.13	12258	16739099					1119887	309013	273331	27.59	37.99	52353	16.94		0.26296	0.36605	0.18737	0.27592	
