track cytoBandIdeo
bigDataUrl cytoBandIdeo.bigBed
shortLabel cytoBandIdeo
longLabel Chromosome ideogram with cytogenetic bands
type bigBed

track gcPercent
bigDataUrl gcPercent.bigWig
shortLabel gcPercent
longLabel gcPercent
type bigWig
color 59,189,191
group annotation
priority 1
visibility dense

track softmasked
bigDataUrl softmasked.bigBed
shortLabel softmasked
longLabel softmasked
type bigBed
color 128,128,128
group annotation
priority 2
visibility dense

track annotation
bigDataUrl annotation.bigBed
shortLabel annotation
longLabel annotation
type bigBed 12
color 140,43,69
group annotation
priority 3
searchIndex name
searchTrix annotation.ix
visibility pack

track RNAseqsamples
shortLabel RNA-seq
longLabel RNA-seq samples
type bigWig
dimensions dimX=view dimY=samples
group trackhub
visibility dense
subGroup1 view Views forward=forward reverse=reverse
subGroup2 samples Samples lenscore=lens_core lensperi=lens_peri
autoScale group
compositeTrack on

    track forwardstrandunstrandedreads
    shortLabel fwd/all reads
    longLabel forward strand/unstranded reads
    type bigWig
    maxHeightPixels 100:50:8
    parent RNAseqsamples
    view forward
    visibility full
    
            track lenscoreforward
            bigDataUrl lenscoreforward.bigWig
            shortLabel lens_core fw
            longLabel lens_core forward
            type bigWig
            color 191,0,0
            parent forwardstrandunstrandedreads
            priority 11.0
            visibility full
            subGroups samples=lenscore view=forward
    
            track lensperiforward
            bigDataUrl lensperiforward.bigWig
            shortLabel lens_peri fw
            longLabel lens_peri forward
            type bigWig
            color 191,139,0
            parent forwardstrandunstrandedreads
            priority 13.0
            visibility full
            subGroups samples=lensperi view=forward

    track reversestrandreads
    shortLabel rev reads
    longLabel reverse strand reads
    type bigWig
    maxHeightPixels 100:50:8
    parent RNAseqsamples
    view reverse
    visibility full
    
            track lenscorereverse
            bigDataUrl lenscorereverse.bigWig
            shortLabel lens_core rv
            longLabel lens_core reverse
            type bigWig
            color 212,57,57
            parent reversestrandreads
            priority 12.0
            visibility full
            subGroups samples=lenscore view=reverse
    
            track lensperireverse
            bigDataUrl lensperireverse.bigWig
            shortLabel lens_peri rv
            longLabel lens_peri reverse
            type bigWig
            color 212,170,57
            parent reversestrandreads
            priority 14.0
            visibility full
            subGroups samples=lensperi view=reverse